Raptor 3.0.1
A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences
update_parent_kmers.hpp
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1// --------------------------------------------------------------------------------------------------
2// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin
3// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik
4// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
5// shipped with this file and also available at: https://github.com/seqan/raptor/blob/main/LICENSE.md
6// --------------------------------------------------------------------------------------------------
7
13#pragma once
14
15#include <robin_hood.h>
16
18
19namespace raptor::hibf
20{
21
22void update_parent_kmers(robin_hood::unordered_flat_set<size_t> & parent_kmers,
23 robin_hood::unordered_flat_set<size_t> const & kmers,
24 timer<concurrent::yes> & merge_kmers_timer);
25
26} // namespace raptor::hibf
Must be first include.
Definition: bin_size_in_bits.hpp:18
Provides raptor::timer.