Package edu.msu.cme.rdp.classifier.train
Class LineageSequence
java.lang.Object
edu.msu.cme.rdp.readseq.readers.Sequence
edu.msu.cme.rdp.classifier.train.LineageSequence
- All Implemented Interfaces:
Serializable
public class LineageSequence
extends edu.msu.cme.rdp.readseq.readers.Sequence
A ParsedRawSequence holds the data for a raw sequence.
- See Also:
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Field Summary
Fields inherited from class edu.msu.cme.rdp.readseq.readers.Sequence
desc, seqName, seqString
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Constructor Summary
ConstructorsConstructorDescriptionLineageSequence
(String n, List<String> al, String seq) Creates new ParsedRawSequence. -
Method Summary
Modifier and TypeMethodDescriptionReturns the list of the ancestor taxa, with the highest ranked taxon first.getDesc()
edu.msu.cme.rdp.readseq.utils.orientation.GoodWordIterator
getPartialSeqIteratorbyGoodBases
(int num_good_bases) Methods inherited from class edu.msu.cme.rdp.readseq.readers.Sequence
getSeqName, getSeqString
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Constructor Details
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LineageSequence
Creates new ParsedRawSequence.
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Method Details
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getAncestors
Returns the list of the ancestor taxa, with the highest ranked taxon first. -
getDesc
- Overrides:
getDesc
in classedu.msu.cme.rdp.readseq.readers.Sequence
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getPartialSeqIteratorbyGoodBases
public edu.msu.cme.rdp.readseq.utils.orientation.GoodWordIterator getPartialSeqIteratorbyGoodBases(int num_good_bases) throws IOException - Throws:
IOException
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