Package edu.msu.cme.rdp.unifrac
Class UnifracTaxon
java.lang.Object
edu.msu.cme.rdp.taxatree.Node
edu.msu.cme.rdp.taxatree.Taxon
edu.msu.cme.rdp.multicompare.taxon.MCTaxon
edu.msu.cme.rdp.unifrac.UnifracTaxon
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Field Summary
Fields inherited from class edu.msu.cme.rdp.multicompare.taxon.MCTaxon
Count_Array_size, sampleCountMap
Fields inherited from class edu.msu.cme.rdp.taxatree.Taxon
ROOT_TAXON
Fields inherited from class edu.msu.cme.rdp.taxatree.Node
taxid
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Constructor Summary
ConstructorsConstructorDescriptionUnifracTaxon
(int taxid, String name, String rank, float bl) UnifracTaxon
(int taxid, String name, String rank, float bl, boolean unclassified) UnifracTaxon
(MCTaxon taxon, float bl) -
Method Summary
Modifier and TypeMethodDescriptionvoid
addSampleCount
(MCSample sample, double count) boolean
containsSample
(MCSample sample) float
getBl()
void
void
resetSamples
(List<UnifracTreeBuilder.UnifracSample> samplePool) void
setSampleCount
(MCSample sample, double count) Methods inherited from class edu.msu.cme.rdp.multicompare.taxon.MCTaxon
addSequence, getCopyCorrectedCount, getCount, getLineage, getSamples, getSequences, incCount, incCount, setLineage
Methods inherited from class edu.msu.cme.rdp.taxatree.Taxon
getName, getRank, getTaxid, getUnclassifiedId, isUnclassified
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Constructor Details
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UnifracTaxon
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UnifracTaxon
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UnifracTaxon
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Method Details
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getBl
public float getBl() -
containsSample
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resetSamples
public void resetSamples() -
setSampleCount
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addSampleCount
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resetSamples
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