Class DecisionMaker

java.lang.Object
edu.msu.cme.rdp.classifier.train.validation.DecisionMaker

public class DecisionMaker extends Object
  • Field Details

  • Constructor Details

    • DecisionMaker

      public DecisionMaker(TreeFactory factory)
      Creates new DecisionMaker
  • Method Details

    • getBestClasspath

      public List<ValidationClassificationResult> getBestClasspath(edu.msu.cme.rdp.readseq.utils.orientation.GoodWordIterator iterator, HashMap<String,HierarchyTree> nodeMap, boolean useSeed, int min_bootstrap_words) throws IOException
      For each sequence, find the best class among the list of genera using all the overlapping words. Then select a subset of words to get the assignment, repeats 100 times, count the number of votes
      Throws:
      IOException