Package edu.msu.cme.rdp.taxatree.utils
Class ClassifierTreeBuilder<E extends edu.msu.cme.rdp.taxatree.Taxon>
java.lang.Object
edu.msu.cme.rdp.taxatree.utils.ClassifierTreeBuilder<E>
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Nested Class Summary
Nested ClassesModifier and TypeClassDescriptionstatic interface
ClassifierTreeBuilder.ClassifierTaxonFactory<E extends edu.msu.cme.rdp.taxatree.Taxon>
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Constructor Summary
ConstructorsConstructorDescriptionClassifierTreeBuilder
(edu.msu.cme.rdp.taxatree.ConcretRoot<E> root, float conf, ClassifierTreeBuilder.ClassifierTaxonFactory<E> taxonFactory) ClassifierTreeBuilder
(edu.msu.cme.rdp.taxatree.ConcretRoot<E> root, List<ClassificationResult> classifications, float conf, ClassifierTreeBuilder.ClassifierTaxonFactory<E> taxonFactory) ClassifierTreeBuilder
(E rootTaxon, float conf, ClassifierTreeBuilder.ClassifierTaxonFactory<E> taxonFactory) ClassifierTreeBuilder
(E rootTaxon, List<ClassificationResult> classifications, float conf, ClassifierTreeBuilder.ClassifierTaxonFactory<E> taxonFactory) -
Method Summary
Modifier and TypeMethodDescriptionvoid
appendClassification
(ClassificationResult classification) void
appendClassifications
(List<ClassificationResult> classifications) edu.msu.cme.rdp.taxatree.ConcretRoot<E>
getRoot()
void
setIncSeqNodes
(boolean b) void
setTaxonFactory
(ClassifierTreeBuilder.ClassifierTaxonFactory<E> taxonFactory)
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Constructor Details
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ClassifierTreeBuilder
public ClassifierTreeBuilder(E rootTaxon, List<ClassificationResult> classifications, float conf, ClassifierTreeBuilder.ClassifierTaxonFactory<E> taxonFactory) -
ClassifierTreeBuilder
public ClassifierTreeBuilder(edu.msu.cme.rdp.taxatree.ConcretRoot<E> root, List<ClassificationResult> classifications, float conf, ClassifierTreeBuilder.ClassifierTaxonFactory<E> taxonFactory) -
ClassifierTreeBuilder
public ClassifierTreeBuilder(E rootTaxon, float conf, ClassifierTreeBuilder.ClassifierTaxonFactory<E> taxonFactory) -
ClassifierTreeBuilder
public ClassifierTreeBuilder(edu.msu.cme.rdp.taxatree.ConcretRoot<E> root, float conf, ClassifierTreeBuilder.ClassifierTaxonFactory<E> taxonFactory)
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Method Details
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appendClassifications
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appendClassification
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setIncSeqNodes
public void setIncSeqNodes(boolean b) -
setTaxonFactory
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getRoot
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