Class UnifracTree

java.lang.Object
edu.msu.cme.rdp.taxatree.ConcretRoot<UnifracTaxon>
edu.msu.cme.rdp.taxatree.UnifracTree

public class UnifracTree extends edu.msu.cme.rdp.taxatree.ConcretRoot<UnifracTaxon>
  • Constructor Details

    • UnifracTree

      public UnifracTree()
  • Method Details

    • computeUnifrac

      public UnifracTree.UnifracResult computeUnifrac()
    • computeUnifracSig

      public UnifracTree.UnifracResult computeUnifracSig(int permutations, boolean weighted)
    • computeWeightedUnifrac

      public UnifracTree.UnifracResult computeWeightedUnifrac()
    • printLeaves

      public void printLeaves()
    • addChild

      public void addChild(UnifracTaxon child, int parentId)
      Overrides:
      addChild in class edu.msu.cme.rdp.taxatree.ConcretRoot<UnifracTaxon>
    • refreshInnerTaxa

      public void refreshInnerTaxa()
    • addTaxon

      public void addTaxon(int parent, int taxid, String name, MCSample sample, float bl)