Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet


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Documentation for package ‘ArrayExpress’ version 1.60.0

Help Pages

ae2bioc Convert MAGE-TAB files from raw data into a Bioconductor object
ArrayExpress R objects from ArrayExpress collection
extract.zip Unzip archives in a specified directory
getAE Download MAGE-TAB files from the ArrayExpress collection in a specified directory
getcolproc Return the possible column names from processed MAGE-TAB files
getcolraw Return the possible column names from raw MAGE-TAB files
procset Convert processed MAGE-TAB files into a Bioconductor object
queryAE Query of the ArrayExpress collection in Biostudies