Package picard.illumina
Class BarcodeExtractor
java.lang.Object
picard.illumina.BarcodeExtractor
BarcodeExtractor is used to match barcodes and collect barcode match metrics.
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Nested Class Summary
Nested ClassesModifier and TypeClassDescriptionstatic class
Utility class to hang onto data about the best match for a given barcode -
Constructor Summary
ConstructorsConstructorDescriptionBarcodeExtractor
(Map<String, BarcodeMetric> barcodeToMetrics, BarcodeMetric noMatchMetric, ReadStructure readStructure, int maxNoCalls, int maxMismatches, int minMismatchDelta, int minimumBaseQuality, DistanceMetric distanceMode) -
Method Summary
Modifier and TypeMethodDescriptionstatic String[]
generateNoMatchBarcode
(ReadStructure inputReadStructure) int
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Constructor Details
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BarcodeExtractor
public BarcodeExtractor(Map<String, BarcodeMetric> barcodeToMetrics, BarcodeMetric noMatchMetric, ReadStructure readStructure, int maxNoCalls, int maxMismatches, int minMismatchDelta, int minimumBaseQuality, DistanceMetric distanceMode)
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Method Details
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getMetrics
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getNoMatchMetric
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getMinimumBaseQuality
public int getMinimumBaseQuality() -
generateNoMatchBarcode
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