Package picard.vcf

Class VcfFormatConverter


@DocumentedFeature public class VcfFormatConverter extends CommandLineProgram
Converts an ASCII VCF file to a binary BCF or vice versa.
  • Field Details

    • LOG

      public static final htsjdk.samtools.util.Log LOG
    • INPUT

      @Argument(doc="The BCF or VCF input file.", shortName="I") public File INPUT
    • OUTPUT

      @Argument(doc="The BCF or VCF output file name.", shortName="O") public File OUTPUT
    • REQUIRE_INDEX

      @Argument(doc="Fail if an index is not available for the input VCF/BCF") public Boolean REQUIRE_INDEX
  • Constructor Details

    • VcfFormatConverter

      public VcfFormatConverter()
  • Method Details

    • doWork

      protected int doWork()
      Description copied from class: CommandLineProgram
      Do the work after command line has been parsed. RuntimeException may be thrown by this method, and are reported appropriately.
      Specified by:
      doWork in class CommandLineProgram
      Returns:
      program exit status.