Class PrimaryAlignmentKey

java.lang.Object
picard.sam.util.PrimaryAlignmentKey
All Implemented Interfaces:
Comparable<PrimaryAlignmentKey>

public final class PrimaryAlignmentKey extends Object implements Comparable<PrimaryAlignmentKey>
It is useful to define a key such that the key will occur at most once among the primary alignments in a given file (assuming the file is valid). The read name + pairing status should be sufficient for this.