Package picard.illumina.parser.fakers
Class FilterFileFaker
java.lang.Object
picard.illumina.parser.fakers.FileFaker
picard.illumina.parser.fakers.FilterFileFaker
Created by jcarey on 3/13/14.
Illumina uses an algorithm described in "Theory of RTA" that determines whether or not a cluster passes filter("PF") or not.
These values are written as sequential bytes to Filter Files. The structure of a filter file is as follows:
Bytes 0-3 : 0
Bytes 4-7 : unsigned int version
Bytes 8-11 : unsigned int numClusters
Bytes 12...: boolean encoded in a byte representing whether the cluster passing or failing.
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionprotected boolean
protected int
protected void
fakeFile
(ByteBuffer buffer)
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Constructor Details
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FilterFileFaker
public FilterFileFaker()
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Method Details
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fakeFile
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addLeadingZeros
protected boolean addLeadingZeros()- Specified by:
addLeadingZeros
in classFileFaker
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bufferSize
protected int bufferSize()- Specified by:
bufferSize
in classFileFaker
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