Class ReadData

java.lang.Object
picard.illumina.parser.ReadData

public class ReadData extends Object
Data for a single end of a paired-end read, a barcode read, or for the entire read if not paired end.
  • Constructor Details

    • ReadData

      public ReadData()
    • ReadData

      public ReadData(ReadType readType)
  • Method Details

    • getBases

      public byte[] getBases()
      Returns:
      ASCII byte representation of bases.
    • setBases

      public void setBases(byte[] bases)
    • getQualities

      public byte[] getQualities()
      Returns:
      Phred-binary scaled qualities. E.g. Q20 is the byte with value==20.
    • setQualities

      public void setQualities(byte[] qualities)
    • getReadType

      public ReadType getReadType()
    • setReadType

      public void setReadType(ReadType readType)