Class CompareGtcFiles

java.lang.Object
picard.cmdline.CommandLineProgram
picard.arrays.illumina.CompareGtcFiles

public class CompareGtcFiles extends CommandLineProgram
A simple tool to compare two Illumina GTC files.
  • Field Details

    • INPUT

      @Argument(shortName="I", doc="GTC input files to compare.", minElements=2, maxElements=2) public List<File> INPUT
    • ILLUMINA_BEAD_POOL_MANIFEST_FILE

      @Argument(shortName="BPM_FILE", doc="The Illumina Bead Pool Manifest (.bpm) file") public File ILLUMINA_BEAD_POOL_MANIFEST_FILE
  • Constructor Details

    • CompareGtcFiles

      public CompareGtcFiles()
  • Method Details

    • doWork

      protected int doWork()
      Description copied from class: CommandLineProgram
      Do the work after command line has been parsed. RuntimeException may be thrown by this method, and are reported appropriately.
      Specified by:
      doWork in class CommandLineProgram
      Returns:
      program exit status.