Package picard.arrays

Class CreateVerifyIDIntensityContaminationMetricsFile

java.lang.Object
picard.cmdline.CommandLineProgram
picard.arrays.CreateVerifyIDIntensityContaminationMetricsFile

@DocumentedFeature public class CreateVerifyIDIntensityContaminationMetricsFile extends CommandLineProgram
A simple program to create a standard picard metrics file from the output of VerifyIDIntensity
  • Field Details

    • INPUT

      @Argument(shortName="I", doc="The output of VerifyIDIntensity(typically captured stdout).") public File INPUT
    • OUTPUT

      @Argument(shortName="O", doc="Basename for the metrics file that will be written. Resulting file will be <OUTPUT>.verifyidintensity_metrics") public File OUTPUT
    • FILE_EXTENSION

      public static final String FILE_EXTENSION
      See Also:
  • Constructor Details

    • CreateVerifyIDIntensityContaminationMetricsFile

      public CreateVerifyIDIntensityContaminationMetricsFile()
  • Method Details

    • doWork

      protected int doWork()
      Description copied from class: CommandLineProgram
      Do the work after command line has been parsed. RuntimeException may be thrown by this method, and are reported appropriately.
      Specified by:
      doWork in class CommandLineProgram
      Returns:
      program exit status.