Here is a list of all class members with links to the classes they belong to:
- g -
- GeneAssociation() : GeneAssociation
- GeneProduct() : GeneProduct
- GeneProductAssociation : FbcAssociation, GeneProductAssociation
- GeneProductRef() : GeneProductRef
- GeneralGlyph() : GeneralGlyph
- get() : List, ListOf, ListOfColorDefinitions, ListOfCompartmentGlyphs, ListOfCompartmentReferences, ListOfCompartments, ListOfCompartmentTypes, ListOfConstraints, ListOfCurveElements, ListOfDeletions, ListOfDrawables, ListOfEventAssignments, ListOfEvents, ListOfExternalModelDefinitions, ListOfFbcAssociations, ListOfFluxBounds, ListOfFluxObjectives, ListOfFunctionDefinitions, ListOfFunctionTerms, ListOfGeneAssociations, ListOfGeneProducts, ListOfGlobalRenderInformation, ListOfGlobalStyles, ListOfGradientDefinitions, ListOfGradientStops, ListOfGraphicalObjects, ListOfGroups, ListOfInitialAssignments, ListOfInputs, ListOfInSpeciesTypeBonds, ListOfKeyValuePairs, ListOfLayouts, ListOfLineEndings, ListOfLineSegments, ListOfLocalParameters, ListOfLocalRenderInformation, ListOfLocalStyles, ListOfMembers, ListOfModelDefinitions, ListOfMultiSpeciesTypes, ListOfObjectives, ListOfOutputs, ListOfOutwardBindingSites, ListOfParameters, ListOfPorts, ListOfPossibleSpeciesFeatureValues, ListOfQualitativeSpecies, ListOfReactionGlyphs, ListOfReactions, ListOfReferenceGlyphs, ListOfReplacedElements, ListOfRules, ListOfSpecies, ListOfSpeciesFeatures, ListOfSpeciesFeatureTypes, ListOfSpeciesFeatureValues, ListOfSpeciesGlyphs, ListOfSpeciesReferenceGlyphs, ListOfSpeciesReferences, ListOfSpeciesTypeComponentIndexes, ListOfSpeciesTypeComponentMapInProducts, ListOfSpeciesTypeInstances, ListOfSpeciesTypes, ListOfSubmodels, ListOfTextGlyphs, ListOfTransitions, ListOfUnitDefinitions, ListOfUnits, ListOfUserDefinedConstraintComponents, ListOfUserDefinedConstraints, SubListOfSpeciesFeatures
- getAbsoluteValue() : RelAbsVector
- getActiveObjective() : FbcModelPlugin, ListOfObjectives
- getActiveObjectiveId() : FbcModelPlugin
- getAddDefaultUnits() : SBMLLevelVersionConverter
- getAdditionalGraphicalObject() : Layout
- getAllElements() : BoundingBox, CompModelPlugin, CompSBasePlugin, CompSBMLDocumentPlugin, CubicBezier, Curve, Event, FbcAnd, FbcModelPlugin, FbcOr, FbcReactionPlugin, FbcSBasePlugin, GeneProductAssociation, GeneralGlyph, GlobalRenderInformation, GradientBase, GraphicalObject, Group, GroupsModelPlugin, KineticLaw, Layout, LayoutModelPlugin, LineEnding, LineSegment, ListOf, ListOfFunctionTerms, ListOfGlobalRenderInformation, ListOfLocalRenderInformation, LocalRenderInformation, MultiCompartmentPlugin, MultiModelPlugin, MultiSimpleSpeciesReferencePlugin, MultiSpeciesPlugin, MultiSpeciesReferencePlugin, MultiSpeciesType, Objective, Polygon, Reaction, ReactionGlyph, ReferenceGlyph, RenderCurve, RenderGroup, RenderInformationBase, RenderLayoutPlugin, RenderListOfLayoutsPlugin, SBase, SBasePlugin, SBaseRef, SBMLDocument, SpeciesFeature, SpeciesFeatureType, SpeciesReferenceGlyph, Style, Submodel, Transition, UnitDefinition, UserDefinedConstraint
- getAllElementsFromPlugins() : SBase
- getAllInstantiatedElements() : Submodel
- getAllRegisteredPackageNames() : SBMLExtensionRegistry
- getAlpha() : ColorDefinition
- getAncestorOfType() : SBase
- getAnnotation() : SBase
- getAnnotationString() : SBase
- getApplicableValidators() : SBMLInternalValidator
- getArgument() : FunctionDefinition
- getAssociatedSpecies() : GeneProduct
- getAssociation() : FbcAnd, FbcOr, GeneAssociation, GeneProductAssociation
- getASTPlugin() : ASTNode, SBMLExtensionRegistry
- getASTPlugins() : SBMLExtensionRegistry
- getAttributes() : XMLToken
- getAttributesLength() : XMLToken
- getAttrIndex() : XMLToken
- getAttrName() : XMLToken
- getAttrPrefix() : XMLToken
- getAttrPrefixedName() : XMLToken
- getAttrURI() : XMLToken
- getAttrValue() : XMLToken
- getBackgroundColor() : DefaultValues, RenderInformationBase
- getBasePoint1() : CubicBezier
- getBasePoint1_x() : RenderCubicBezier
- getBasePoint1_y() : RenderCubicBezier
- getBasePoint1_z() : RenderCubicBezier
- getBasePoint2() : CubicBezier
- getBasePoint2_x() : RenderCubicBezier
- getBasePoint2_y() : RenderCubicBezier
- getBasePoint2_z() : RenderCubicBezier
- getBindingSite1() : InSpeciesTypeBond
- getBindingSite2() : InSpeciesTypeBond
- getBindingStatus() : OutwardBindingSite
- getBiologicalQualifierType() : CVTerm
- getBlue() : ColorDefinition
- getBody() : FunctionDefinition
- getBoolValue() : ConversionOption, ConversionProperties
- getBoundaryCondition() : Species
- getBoundingBox() : GraphicalObject, LineEnding
- getBoundingBoxExplicitlySet() : GraphicalObject
- getByIdRef() : ListOfMembers
- getByLowerBound() : ListOfUserDefinedConstraints
- getBySpecies() : ListOfInputs, ListOfOutputs
- getByUpperBound() : ListOfUserDefinedConstraints
- getByVariable() : ListOfUserDefinedConstraintComponents
- getCategory() : FbcExtension, Validator, XMLError
- getCategoryAsString() : XMLError
- getCenterX() : RadialGradient
- getCenterY() : RadialGradient
- getCenterZ() : RadialGradient
- getCharacter() : ASTNode
- getCharacters() : XMLToken
- getCharge() : FbcSpeciesPlugin, Species
- getChargeAsDouble() : FbcSpeciesPlugin
- getChemicalFormula() : FbcSpeciesPlugin
- getChild() : ASTNode, XMLNode
- getClass() : ASTNode
- getCoefficient() : FluxObjective, UserDefinedConstraintComponent
- getColorDefinition() : RenderInformationBase
- getColumn() : SBase, XMLError, XMLToken
- getComparisonCaseSensitivity() : L3ParserSettings
- getCompartment() : CompartmentReference, MultiSpeciesType, QualitativeSpecies, Reaction, Species
- getCompartmentGlyph() : Layout
- getCompartmentId() : CompartmentGlyph
- getCompartmentReference() : MultiCompartmentPlugin, MultiSimpleSpeciesReferencePlugin, SpeciesTypeInstance
- getCompartmentType() : Compartment, MultiCompartmentPlugin
- getComponent() : OutwardBindingSite, SpeciesFeature, SpeciesTypeComponentIndex, SubListOfSpeciesFeatures
- getConstant() : Compartment, Parameter, QualitativeSpecies, Species, SpeciesReference
- getConversionFactor() : ReplacedElement, Species
- getConversionValidators() : SBMLInternalValidator
- getConverterByIndex() : SBMLConverterRegistry
- getConverterFor() : SBMLConverterRegistry
- getCoordinate() : RelAbsVector
- getCoreDefinitionsAdded() : DefinitionURLRegistry
- getCreatedDate() : ModelHistory
- getCreator() : ModelHistory
- getCurve() : GeneralGlyph, ReactionGlyph, ReferenceGlyph, SpeciesReferenceGlyph
- getCurveElement() : RenderCurve
- getCurveExplicitlySet() : GeneralGlyph, ReactionGlyph, ReferenceGlyph, SpeciesReferenceGlyph
- getCurveSegment() : Curve
- getCVTerm() : SBase
- getCVTerms() : SBase
- getCX() : Ellipse
- getCx() : RadialGradient
- getCY() : Ellipse
- getCy() : RadialGradient
- getCZ() : Ellipse
- getCz() : RadialGradient
- getDashArray() : GraphicalPrimitive1D
- getDashByIndex() : GraphicalPrimitive1D
- getDateAsString() : Date
- getDay() : Date
- getDefault_z() : DefaultValues
- getDefaultLevel() : CompExtension, FbcExtension, GroupsExtension, LayoutExtension, MultiExtension, QualExtension, RenderExtension, SBMLDocument
- getDefaultPackageVersion() : CompExtension, FbcExtension, GroupsExtension, LayoutExtension, MultiExtension, QualExtension, RenderExtension
- getDefaultProperties() : CobraToFbcConverter, CompFlatteningConverter, FbcToCobraConverter, FbcV1ToV2Converter, FbcV2ToV1Converter, RenderLayoutConverter, SBMLConverter, SBMLFunctionDefinitionConverter, SBMLIdConverter, SBMLInferUnitsConverter, SBMLInitialAssignmentConverter, SBMLLevel1Version1Converter, SBMLLevelVersionConverter, SBMLLocalParameterConverter, SBMLRateOfConverter, SBMLReactionConverter, SBMLRuleConverter, SBMLStripPackageConverter, SBMLUnitsConverter
- getDefaultTerm() : ListOfFunctionTerms, Transition
- getDefaultValues() : ListOfGlobalRenderInformation, ListOfLocalRenderInformation
- getDefaultVersion() : CompExtension, FbcExtension, GroupsExtension, LayoutExtension, MultiExtension, QualExtension, RenderExtension, SBMLDocument
- getDefinitionURL() : ASTNode
- getDefinitionUrlByIndex() : DefinitionURLRegistry
- getDefinitionURLString() : ASTNode
- getDelay() : Event
- getDeletion() : ReplacedElement, Submodel
- getDenominator() : ASTNode, SpeciesReference
- getDepth() : Dimensions
- getDerivedUnitDefinition() : Compartment, Delay, EventAssignment, InitialAssignment, KineticLaw, LocalParameter, Parameter, Rule, Species, StoichiometryMath
- getDescription() : ConversionOption, ConversionProperties
- getDExplicitlySet() : Dimensions
- getDimensions() : BoundingBox, Layout
- getDimensionsExplicitlySet() : BoundingBox, Layout
- getDisabledPlugin() : SBase
- getDivider() : CompModelPlugin
- getDocument() : SBMLConverter, SBMLValidator
- getDoubleValue() : ConversionOption, ConversionProperties
- getElement() : Polygon, RenderCurve, RenderGroup
- getElementByMetaId() : CompModelPlugin, CompSBasePlugin, CompSBMLDocumentPlugin, Event, FbcModelPlugin, FbcSBasePlugin, GeneProductAssociation, GlobalRenderInformation, GradientBase, Group, GroupsModelPlugin, KineticLaw, LineEnding, ListOf, ListOfGlobalRenderInformation, ListOfLocalRenderInformation, LocalRenderInformation, Objective, Polygon, Reaction, RenderCurve, RenderGroup, RenderInformationBase, SBase, SBasePlugin, SBaseRef, SBMLDocument, Style, Submodel, Transition, UnitDefinition, UserDefinedConstraint
- getElementBySId() : CompModelPlugin, CompSBasePlugin, CompSBMLDocumentPlugin, Event, FbcModelPlugin, FbcSBasePlugin, GeneProductAssociation, GlobalRenderInformation, GradientBase, Group, GroupsModelPlugin, KineticLaw, LineEnding, ListOf, ListOfEventAssignments, ListOfGlobalRenderInformation, ListOfInitialAssignments, ListOfLocalParameters, ListOfLocalRenderInformation, ListOfPorts, ListOfRules, ListOfUnitDefinitions, LocalRenderInformation, Objective, Polygon, Reaction, RenderCurve, RenderGroup, RenderInformationBase, SBase, SBasePlugin, SBaseRef, SBMLDocument, Style, Submodel, Transition, UnitDefinition, UserDefinedConstraint
- getElementName() : Association, BindingSiteSpeciesType, BoundingBox, ColorDefinition, Compartment, CompartmentGlyph, CompartmentReference, CompartmentType, Constraint, CubicBezier, Curve, DefaultTerm, DefaultValues, Delay, Deletion, Dimensions, Ellipse, Event, EventAssignment, ExternalModelDefinition, FbcAnd, FbcAssociation, FbcOr, FluxBound, FluxObjective, FunctionDefinition, FunctionTerm, GeneAssociation, GeneProduct, GeneProductAssociation, GeneProductRef, GeneralGlyph, GlobalRenderInformation, GlobalStyle, GradientBase, GradientStop, GraphicalObject, GraphicalPrimitive2D, Group, Image, InitialAssignment, Input, InSpeciesTypeBond, IntraSpeciesReaction, KeyValuePair, KineticLaw, Layout, LinearGradient, LineEnding, LineSegment, ListOf, ListOfColorDefinitions, ListOfCompartmentGlyphs, ListOfCompartmentReferences, ListOfCompartments, ListOfCompartmentTypes, ListOfConstraints, ListOfCurveElements, ListOfDeletions, ListOfDrawables, ListOfEventAssignments, ListOfEvents, ListOfExternalModelDefinitions, ListOfFbcAssociations, ListOfFluxBounds, ListOfFluxObjectives, ListOfFunctionDefinitions, ListOfFunctionTerms, ListOfGeneAssociations, ListOfGeneProducts, ListOfGlobalRenderInformation, ListOfGlobalStyles, ListOfGradientDefinitions, ListOfGradientStops, ListOfGraphicalObjects, ListOfGroups, ListOfInitialAssignments, ListOfInputs, ListOfInSpeciesTypeBonds, ListOfKeyValuePairs, ListOfLayouts, ListOfLineEndings, ListOfLineSegments, ListOfLocalParameters, ListOfLocalRenderInformation, ListOfLocalStyles, ListOfMembers, ListOfModelDefinitions, ListOfMultiSpeciesTypes, ListOfObjectives, ListOfOutputs, ListOfOutwardBindingSites, ListOfParameters, ListOfPorts, ListOfPossibleSpeciesFeatureValues, ListOfQualitativeSpecies, ListOfReactionGlyphs, ListOfReactions, ListOfReferenceGlyphs, ListOfReplacedElements, ListOfRules, ListOfSpecies, ListOfSpeciesFeatures, ListOfSpeciesFeatureTypes, ListOfSpeciesFeatureValues, ListOfSpeciesGlyphs, ListOfSpeciesReferenceGlyphs, ListOfSpeciesReferences, ListOfSpeciesTypeComponentIndexes, ListOfSpeciesTypeComponentMapInProducts, ListOfSpeciesTypeInstances, ListOfSpeciesTypes, ListOfSubmodels, ListOfTextGlyphs, ListOfTransitions, ListOfUnitDefinitions, ListOfUnits, ListOfUserDefinedConstraintComponents, ListOfUserDefinedConstraints, LocalParameter, LocalRenderInformation, LocalStyle, Member, ModelDefinition, ModifierSpeciesReference, MultiSpeciesType, Objective, Output, OutwardBindingSite, Parameter, Point, Polygon, Port, PossibleSpeciesFeatureValue, Priority, QualitativeSpecies, RadialGradient, Reaction, ReactionGlyph, Rectangle, ReferenceGlyph, RenderCubicBezier, RenderCurve, RenderGroup, RenderPoint, ReplacedBy, ReplacedElement, Rule, SBase, SBaseExtensionPoint, SBaseRef, SBMLDocument, Species, SpeciesFeature, SpeciesFeatureType, SpeciesFeatureValue, SpeciesGlyph, SpeciesReference, SpeciesReferenceGlyph, SpeciesType, SpeciesTypeComponentIndex, SpeciesTypeComponentMapInProduct, SpeciesTypeInstance, StoichiometryMath, Style, SubListOfSpeciesFeatures, Submodel, Text, TextGlyph, Transformation2D, Transformation, Transition, Trigger, Unit, UnitDefinition, UserDefinedConstraint, UserDefinedConstraintComponent
- getElementNamespace() : SBasePlugin
- getEmail() : ModelCreator
- getEnableRotationalMapping() : DefaultValues, LineEnding
- getEncoding() : XMLInputStream
- getEnd() : LineSegment
- getEndHead() : DefaultValues, RenderCurve, RenderGroup
- getError() : SBMLDocument, SBMLErrorLog, XMLErrorLog
- getErrorId() : XMLError
- getErrorIdOffset() : XMLError
- getErrorLog() : SBMLDocument, SBMLValidator, XMLInputStream
- getErrorWithSeverity() : SBMLDocument, SBMLErrorLog
- getEventAssignment() : Event
- getExponent() : ASTNode, Unit
- getExponentAsDouble() : Unit
- getExtension() : SBMLExtensionRegistry
- getExtentConversionFactor() : Submodel
- getExternalModelDefinition() : CompSBMLDocumentPlugin
- getFailure() : SBMLValidator
- getFailures() : SBMLValidator, Validator
- getFamilyName() : ModelCreator
- getFast() : Reaction
- getFill() : DefaultValues, GraphicalPrimitive2D
- getFillColor() : GraphicalPrimitive2D
- getFillRule() : DefaultValues, GraphicalPrimitive2D
- getFillRuleAsString() : DefaultValues, GraphicalPrimitive2D
- getFloatValue() : ConversionOption, ConversionProperties
- getFluxBound() : FbcModelPlugin
- getFluxBoundOperation() : FluxBound
- getFluxBoundsForReaction() : FbcModelPlugin
- getFluxObjective() : Objective
- getFocalPointX() : RadialGradient
- getFocalPointY() : RadialGradient
- getFocalPointZ() : RadialGradient
- getFontFamily() : DefaultValues, RenderGroup, Text
- getFontSize() : DefaultValues, RenderGroup, Text
- getFontStyle() : DefaultValues, RenderGroup, Text
- getFontStyleAsString() : DefaultValues, RenderGroup, Text
- getFontWeight() : DefaultValues, RenderGroup, Text
- getFontWeightAsString() : DefaultValues, RenderGroup, Text
- getFormula() : KineticLaw, Rule
- getFunctionTerm() : Transition
- getFx() : RadialGradient
- getFy() : RadialGradient
- getFz() : RadialGradient
- getGeneAssociation() : FbcModelPlugin
- getGeneProduct() : FbcModelPlugin, GeneProductRef
- getGeneProductAssociation() : FbcReactionPlugin
- getGeneProductByLabel() : FbcModelPlugin
- getGeneralGlyph() : Layout
- getGivenName() : ModelCreator
- getGlobalStyle() : GlobalRenderInformation
- getGlyphId() : ReferenceGlyph
- getGradientDefinition() : RenderInformationBase
- getGradientStop() : GradientBase
- getGraphicalObjectId() : TextGlyph
- getGreen() : ColorDefinition
- getGroup() : GroupsModelPlugin, LineEnding, Style
- getHasOnlySubstanceUnits() : Species
- getHeight() : Dimensions, Image, Rectangle
- getHost() : SBMLUri
- getHour() : Date
- getHoursOffset() : Date
- getHref() : Image
- getId() : ASTNode, BoundingBox, ColorDefinition, Compartment, CompartmentReference, CompartmentType, Deletion, Dimensions, Event, EventAssignment, ExternalModelDefinition, FluxBound, FluxObjective, FunctionDefinition, GeneAssociation, GeneProduct, GeneProductAssociation, GeneProductRef, GradientBase, GraphicalObject, GraphicalPrimitive1D, Group, Image, InitialAssignment, Input, InSpeciesTypeBond, KeyValuePair, Layout, LineEnding, ListOfMembers, Member, MultiSpeciesType, Objective, Output, OutwardBindingSite, Parameter, Point, Port, PossibleSpeciesFeatureValue, QualitativeSpecies, Reaction, RenderInformationBase, Rule, SBase, SimpleSpeciesReference, Species, SpeciesFeature, SpeciesFeatureType, SpeciesType, SpeciesTypeComponentIndex, SpeciesTypeComponentMapInProduct, SpeciesTypeInstance, Style, SubListOfSpeciesFeatures, Submodel, Transition, UnitDefinition, UserDefinedConstraint, UserDefinedConstraintComponent, VConstraint
- getIdAttribute() : SBase
- getIdentifyingParent() : SpeciesTypeComponentIndex
- getIdentityMatrix() : Transformation
- getIdentityMatrix2D() : Transformation2D
- getIdList() : LocalStyle
- getIdRef() : Member, SBaseRef
- getImageReference() : Image
- getIndex() : XMLAttributes, XMLNamespaces, XMLNode
- getIndexByPrefix() : XMLNamespaces
- getIndexForReferenceGlyph() : GeneralGlyph
- getIndexForSpeciesReferenceGlyph() : ReactionGlyph
- getIndexForSubGlyph() : GeneralGlyph
- getInitialAmount() : Species
- getInitialConcentration() : Species
- getInitialLevel() : QualitativeSpecies
- getInitialValue() : Trigger
- getInput() : Transition
- getInputBySpecies() : Transition
- getInSpeciesTypeBond() : MultiSpeciesType
- getInstance() : CallbackRegistry, DefinitionURLRegistry, SBMLConverterRegistry, SBMLExtensionRegistry, SBMLResolverRegistry
- getInstantiation() : Submodel
- getInteger() : ASTNode
- getIntValue() : ConversionOption, ConversionProperties
- getIsEnabledRotationalMapping() : LineEnding
- getIsType() : MultiCompartmentPlugin
- getItemTypeCode() : ListOf, ListOfColorDefinitions, ListOfCompartmentGlyphs, ListOfCompartmentReferences, ListOfCompartments, ListOfCompartmentTypes, ListOfConstraints, ListOfCurveElements, ListOfDeletions, ListOfDrawables, ListOfEventAssignments, ListOfEvents, ListOfExternalModelDefinitions, ListOfFbcAssociations, ListOfFluxBounds, ListOfFluxObjectives, ListOfFunctionDefinitions, ListOfFunctionTerms, ListOfGeneAssociations, ListOfGeneProducts, ListOfGlobalRenderInformation, ListOfGlobalStyles, ListOfGradientDefinitions, ListOfGradientStops, ListOfGraphicalObjects, ListOfGroups, ListOfInitialAssignments, ListOfInputs, ListOfInSpeciesTypeBonds, ListOfKeyValuePairs, ListOfLayouts, ListOfLineEndings, ListOfLineSegments, ListOfLocalParameters, ListOfLocalRenderInformation, ListOfLocalStyles, ListOfMembers, ListOfModelDefinitions, ListOfMultiSpeciesTypes, ListOfObjectives, ListOfOutputs, ListOfOutwardBindingSites, ListOfParameters, ListOfPorts, ListOfPossibleSpeciesFeatureValues, ListOfQualitativeSpecies, ListOfReactionGlyphs, ListOfReactions, ListOfReferenceGlyphs, ListOfReplacedElements, ListOfRules, ListOfSpecies, ListOfSpeciesFeatures, ListOfSpeciesFeatureTypes, ListOfSpeciesFeatureValues, ListOfSpeciesGlyphs, ListOfSpeciesReferenceGlyphs, ListOfSpeciesReferences, ListOfSpeciesTypeComponentIndexes, ListOfSpeciesTypeComponentMapInProducts, ListOfSpeciesTypeInstances, ListOfSpeciesTypes, ListOfSubmodels, ListOfTextGlyphs, ListOfTransitions, ListOfUnitDefinitions, ListOfUnits, ListOfUserDefinedConstraintComponents, ListOfUserDefinedConstraints, SubListOfSpeciesFeatures
- getKey() : ConversionOption, KeyValuePair
- getKeyValuePair() : FbcSBasePlugin
- getKind() : Group, Unit
- getKindAsString() : Group
- getKineticLaw() : Reaction
- getL1TypeCode() : Rule
- getLabel() : GeneProduct
- getLayout() : LayoutModelPlugin
- getLeftChild() : ASTNode
- getLength() : XMLAttributes, XMLNamespaces
- getLevel() : CompExtension, FbcExtension, GroupsExtension, LayoutExtension, MultiExtension, QualExtension, RenderExtension, SBase, SBasePlugin, SBMLExtension, SBMLNamespaces
- getLibraryName() : XMLOutputStream
- getLibraryVersion() : XMLOutputStream
- getLine() : SBase, XMLError, XMLToken
- getLinearGradient_x1() : DefaultValues
- getLinearGradient_x2() : DefaultValues
- getLinearGradient_y1() : DefaultValues
- getLinearGradient_y2() : DefaultValues
- getLinearGradient_z1() : DefaultValues
- getLinearGradient_z2() : DefaultValues
- getLineEnding() : RenderInformationBase
- getListCreators() : ModelHistory
- getListModifiedDates() : ModelHistory
- getListNestedCVTerms() : CVTerm
- getListOfAdditionalGraphicalObjects() : Layout
- getListOfAssociations() : FbcAnd, FbcOr
- getListOfColorDefinitions() : RenderInformationBase
- getListOfCompartmentGlyphs() : Layout
- getListOfCompartmentReferences() : MultiCompartmentPlugin
- getListOfCurveSegments() : Curve
- getListOfDeletions() : Submodel
- getListOfElements() : Polygon, RenderCurve, RenderGroup
- getListOfEventAssignments() : Event
- getListOfExternalModelDefinitions() : CompSBMLDocumentPlugin
- getListOfFluxBounds() : FbcModelPlugin
- getListOfFluxObjectives() : Objective
- getListOfFunctionTerms() : Transition
- getListOfGeneAssociations() : FbcModelPlugin
- getListOfGeneProducts() : FbcModelPlugin
- getListOfGlobalRenderInformation() : RenderListOfLayoutsPlugin
- getListOfGlobalStyles() : GlobalRenderInformation
- getListOfGradientDefinitions() : RenderInformationBase
- getListOfGradientStops() : GradientBase
- getListOfGroups() : GroupsModelPlugin
- getListOfInputs() : Transition
- getListOfInSpeciesTypeBonds() : MultiSpeciesType
- getListOfKeyValuePairs() : FbcSBasePlugin
- getListOfLayouts() : LayoutModelPlugin
- getListOfLineEndings() : RenderInformationBase
- getListOfLocalParameters() : KineticLaw
- getListOfLocalRenderInformation() : RenderLayoutPlugin
- getListOfLocalStyles() : LocalRenderInformation
- getListOfMembers() : Group
- getListOfModelDefinitions() : CompSBMLDocumentPlugin
- getListOfModifiers() : Reaction
- getListOfMultiSpeciesTypes() : MultiModelPlugin
- getListOfNodes() : ASTNode
- getListOfObjectives() : FbcModelPlugin
- getListOfOutputs() : Transition
- getListOfOutwardBindingSites() : MultiSpeciesPlugin
- getListOfParameters() : KineticLaw
- getListOfPorts() : CompModelPlugin
- getListOfPossibleSpeciesFeatureValues() : SpeciesFeatureType
- getListOfProducts() : Reaction
- getListOfReactants() : Reaction
- getListOfReactionGlyphs() : Layout
- getListOfReferenceGlyphs() : GeneralGlyph
- getListOfReplacedElements() : CompSBasePlugin
- getListOfSpeciesFeatures() : MultiSpeciesPlugin
- getListOfSpeciesFeatureTypes() : MultiSpeciesType
- getListOfSpeciesFeatureValues() : SpeciesFeature
- getListOfSpeciesGlyphs() : Layout
- getListOfSpeciesReferenceGlyphs() : ReactionGlyph
- getListOfSpeciesTypeComponentIndexes() : MultiSpeciesType
- getListOfSpeciesTypeComponentMapInProducts() : MultiSpeciesReferencePlugin
- getListOfSpeciesTypeInstances() : MultiSpeciesType
- getListOfStyles() : GlobalRenderInformation, LocalRenderInformation
- getListOfSubGlyphs() : GeneralGlyph
- getListOfSubmodels() : CompModelPlugin
- getListOfTextGlyphs() : Layout
- getListOfUnits() : UnitDefinition
- getListOfUserDefinedConstraintComponents() : UserDefinedConstraint
- getListOfUserDefinedConstraints() : FbcModelPlugin
- getLocalParameter() : KineticLaw
- getLocalStyle() : LocalRenderInformation
- getLocationURI() : SBMLDocument
- getLowerBound() : UserDefinedConstraint
- getLowerFluxBound() : FbcReactionPlugin
- getMajorVersion() : ListOfGlobalRenderInformation, ListOfLocalRenderInformation
- getMantissa() : ASTNode
- getMath() : Constraint, Delay, EventAssignment, FunctionDefinition, FunctionTerm, InitialAssignment, KineticLaw, Priority, Rule, StoichiometryMath, Trigger
- getMatrix() : Transformation
- getMatrix2D() : Transformation2D
- getMaxLevel() : QualitativeSpecies
- getMd5() : ExternalModelDefinition
- getMember() : Group
- getMemberByIdRef() : Group
- getMessage() : Constraint, FbcExtension, XMLError
- getMessageString() : Constraint
- getMetaId() : SBase
- getMetaIdRef() : GraphicalObject, Member, SBaseRef
- getMinorVersion() : ListOfGlobalRenderInformation, ListOfLocalRenderInformation
- getMinute() : Date
- getMinutesOffset() : Date
- getModel() : CompSBMLDocumentPlugin, L3ParserSettings, SBase, SBMLDocument, SBMLValidator
- getModelDefinition() : CompSBMLDocumentPlugin
- getModelHistory() : SBase
- getModelQualifierType() : CVTerm
- getModelRef() : ExternalModelDefinition, Submodel
- getModifiedDate() : ModelHistory
- getModifier() : Reaction
- getMonth() : Date
- getMultiplier() : Unit
- getMultiSpeciesType() : MultiModelPlugin
- getName() : ASTNode, ColorDefinition, Compartment, CompartmentReference, CompartmentType, CompExtension, Deletion, Event, ExternalModelDefinition, FbcExtension, FluxBound, FluxObjective, FunctionDefinition, GeneProduct, GeneProductAssociation, GeneProductRef, GradientBase, Group, GroupsExtension, Input, InSpeciesTypeBond, KeyValuePair, Layout, LayoutExtension, ListOfMembers, Member, ModelCreator, MultiExtension, MultiSpeciesType, Objective, Output, OutwardBindingSite, Parameter, Port, PossibleSpeciesFeatureValue, QualExtension, QualitativeSpecies, Reaction, RenderExtension, RenderInformationBase, SBase, SBMLConverter, SBMLExtension, SimpleSpeciesReference, Species, SpeciesFeature, SpeciesFeatureType, SpeciesType, SpeciesTypeComponentIndex, SpeciesTypeComponentMapInProduct, SpeciesTypeInstance, Style, SubListOfSpeciesFeatures, Submodel, Transformation, Transition, UnitDefinition, UserDefinedConstraint, UserDefinedConstraintComponent, XMLAttributes, XMLToken, XMLTriple
- getNamespaceIndex() : XMLToken
- getNamespaceIndexByPrefix() : XMLToken
- getNamespacePrefix() : XMLToken
- getNamespaces() : SBase, SBMLDocument, SBMLNamespaces, XMLToken
- getNamespacesLength() : XMLToken
- getNamespaceURI() : XMLToken
- getNestedCVTerm() : CVTerm
- getNotes() : SBase
- getNotesString() : SBase
- getNumAdditionalGraphicalObjects() : Layout
- getNumArguments() : FunctionDefinition
- getNumAssociations() : Association, FbcAnd, FbcOr
- getNumASTPlugins() : SBMLExtensionRegistry
- getNumAttributes() : XMLAttributes
- getNumCallbacks() : CallbackRegistry
- getNumChildren() : ASTNode, XMLNode
- getNumColorDefinitions() : ListOfColorDefinitions, RenderInformationBase
- getNumCompartmentGlyphs() : Layout
- getNumCompartmentReferences() : MultiCompartmentPlugin
- getNumConverters() : SBMLConverterRegistry
- getNumCreators() : ModelHistory
- getNumCurveSegments() : Curve
- getNumCVTerms() : SBase
- getNumDashes() : GraphicalPrimitive1D
- getNumDefinitionURLs() : DefinitionURLRegistry
- getNumDeletions() : Submodel
- getNumDisabledPlugins() : SBase
- getNumElements() : Polygon, RenderCurve, RenderGroup
- getNumerator() : ASTNode
- getNumericValue() : PossibleSpeciesFeatureValue
- getNumErrors() : SBMLDocument, XMLErrorLog
- getNumEventAssignments() : Event
- getNumExtension() : SBMLExtensionRegistry
- getNumExternalModelDefinitions() : CompSBMLDocumentPlugin
- getNumFailsWithSeverity() : SBMLErrorLog
- getNumFailures() : SBMLValidator
- getNumFbcAssociations() : ListOfFbcAssociations
- getNumFluxBounds() : FbcModelPlugin
- getNumFluxObjectives() : ListOfFluxObjectives, Objective
- getNumFunctionTerms() : Transition
- getNumGeneAssociations() : FbcModelPlugin
- getNumGeneProducts() : FbcModelPlugin, ListOfGeneProducts
- getNumGeneralGlyphs() : Layout
- getNumGlobalRenderInformation() : ListOfGlobalRenderInformation
- getNumGlobalRenderInformationObjects() : RenderListOfLayoutsPlugin
- getNumGlobalStyles() : GlobalRenderInformation, ListOfGlobalStyles
- getNumGradientBases() : ListOfGradientDefinitions
- getNumGradientDefinitions() : RenderInformationBase
- getNumGradientStops() : GradientBase, ListOfGradientStops
- getNumGroups() : GroupsModelPlugin, ListOfGroups
- getNumIds() : LocalStyle
- getNumInputs() : Transition
- getNumInSpeciesTypeBonds() : MultiSpeciesType
- getNumKeyValuePairs() : FbcSBasePlugin, ListOfKeyValuePairs
- getNumLayouts() : LayoutModelPlugin
- getNumLineEndings() : ListOfLineEndings, RenderInformationBase
- getNumLocalParameters() : KineticLaw
- getNumLocalRenderInformation() : ListOfLocalRenderInformation
- getNumLocalRenderInformationObjects() : RenderLayoutPlugin
- getNumLocalStyles() : ListOfLocalStyles, LocalRenderInformation
- getNumMembers() : Group, ListOfMembers
- getNumModelDefinitions() : CompSBMLDocumentPlugin
- getNumModifiedDates() : ModelHistory
- getNumModifiers() : Reaction
- getNumMultiSpeciesTypes() : MultiModelPlugin
- getNumNamespaces() : XMLNamespaces
- getNumNestedCVTerms() : CVTerm
- getNumObjectives() : FbcModelPlugin, ListOfObjectives
- getNumOfSBasePlugins() : SBMLExtension
- getNumOfSupportedPackageURI() : SBasePluginCreatorBase, SBMLExtension
- getNumOptions() : ConversionProperties
- getNumOutputs() : Transition
- getNumOutwardBindingSites() : MultiSpeciesPlugin
- getNumParameters() : KineticLaw
- getNumPlugins() : SBase
- getNumPorts() : CompModelPlugin
- getNumPossibleSpeciesFeatureValues() : SpeciesFeatureType
- getNumProducts() : Reaction
- getNumReactants() : Reaction
- getNumReactionGlyphs() : Layout
- getNumReferenceGlyphs() : GeneralGlyph
- getNumReferents() : ReplacedElement, SBaseRef
- getNumRegisteredPackages() : SBMLExtensionRegistry
- getNumRenderPoints() : ListOfCurveElements
- getNumReplacedElements() : CompSBasePlugin
- getNumResolvers() : SBMLResolverRegistry
- getNumResources() : CVTerm
- getNumRoles() : Style
- getNumSemanticsAnnotations() : ASTNode
- getNumSpeciesFeatures() : ListOfSpeciesFeatures, MultiSpeciesPlugin, SubListOfSpeciesFeatures
- getNumSpeciesFeatureTypes() : MultiSpeciesType
- getNumSpeciesFeatureValues() : SpeciesFeature
- getNumSpeciesGlyphs() : Layout
- getNumSpeciesReferenceGlyphs() : ReactionGlyph
- getNumSpeciesTypeComponentIndexes() : MultiSpeciesType
- getNumSpeciesTypeComponentMapInProducts() : MultiSpeciesReferencePlugin
- getNumSpeciesTypeInstances() : MultiSpeciesType
- getNumStyles() : GlobalRenderInformation, LocalRenderInformation
- getNumSubGlyphs() : GeneralGlyph
- getNumSubListOfSpeciesFeatures() : ListOfSpeciesFeatures, MultiSpeciesPlugin
- getNumSubmodels() : CompModelPlugin
- getNumTextGlyphs() : Layout
- getNumTransformation2Ds() : ListOfDrawables
- getNumTypes() : Style
- getNumUnits() : UnitDefinition
- getNumUserDefinedConstraintComponents() : ListOfUserDefinedConstraintComponents, UserDefinedConstraint
- getNumUserDefinedConstraints() : FbcModelPlugin, ListOfUserDefinedConstraints
- getObjective() : FbcModelPlugin
- getObjectiveType() : Objective
- getObjectRole() : RenderGraphicalObjectPlugin
- getOccur() : SpeciesFeature, SpeciesFeatureType
- getOffset() : GradientStop, Unit
- getOperation() : FluxBound
- getOperatorName() : ASTNode
- getOption() : ConversionProperties
- getOrder() : CompartmentGlyph
- getOrganisation() : ModelCreator
- getOrganization() : ModelCreator
- getOriginOfTextId() : TextGlyph
- getOutput() : Transition
- getOutputBySpecies() : Transition
- getOutputLevel() : Output
- getOutside() : Compartment
- getOutwardBindingSite() : MultiSpeciesPlugin
- getPackage() : XMLError
- getPackageCoreVersion() : SBase
- getPackageName() : CompBase, CompExtension, FbcExtension, GroupsExtension, LayoutExtension, MultiExtension, QualExtension, RenderExtension, SBase, SBaseExtensionPoint, SBasePlugin, SBMLExtensionNamespaces< SBMLExtensionType >, SBMLNamespaces
- getPackageRequired() : SBMLDocument
- getPackageToStrip() : SBMLStripPackageConverter
- getPackageURI() : CompBase
- getPackageVersion() : CompBase, CompExtension, FbcExtension, GroupsExtension, LayoutExtension, MultiExtension, QualExtension, RenderExtension, SBase, SBasePlugin, SBMLExtension, SBMLExtensionNamespaces< SBMLExtensionType >
- getParameter() : KineticLaw
- getParentModel() : CompBase
- getParentSBMLObject() : ASTNode, SBase, SBasePlugin
- getParseAvogadroCsymbol() : L3ParserSettings
- getParseCollapseMinus() : L3ParserSettings
- getParseL3v2Functions() : L3ParserSettings
- getParseLog() : L3ParserSettings
- getParseModuloL3v2() : L3ParserSettings
- getParsePackageMath() : L3ParserSettings
- getParseUnits() : L3ParserSettings
- getPath() : SBMLUri
- getPersistent() : Trigger
- getPkgRequired() : SBMLDocument
- getPlugin() : SBase
- getPort() : CompModelPlugin
- getPortRef() : SBaseRef
- getPosition() : BoundingBox
- getPositionExplicitlySet() : BoundingBox
- getPossibleSpeciesFeatureValue() : SpeciesFeatureType
- getPrecedence() : ASTNode
- getPrefix() : SBase, SBasePlugin, XMLAttributes, XMLNamespaces, XMLToken, XMLTriple
- getPrefixedName() : XMLAttributes, XMLTriple
- getPriority() : Event
- getProduct() : Reaction
- getProductComponent() : SpeciesTypeComponentMapInProduct
- getProgramName() : RenderInformationBase
- getProgramVersion() : RenderInformationBase
- getProperties() : SBMLConverter
- getQualifierType() : CVTerm
- getQualitativeSpecies() : Input, Output
- getQuery() : SBMLUri
- getR() : RadialGradient
- getRadialGradient_cx() : DefaultValues
- getRadialGradient_cy() : DefaultValues
- getRadialGradient_cz() : DefaultValues
- getRadialGradient_fx() : DefaultValues
- getRadialGradient_fy() : DefaultValues
- getRadialGradient_fz() : DefaultValues
- getRadialGradient_r() : DefaultValues
- getRadius() : RadialGradient
- getRadiusX() : Rectangle
- getRadiusY() : Rectangle
- getRatio() : Ellipse, Rectangle
- getReactant() : Reaction, SpeciesTypeComponentMapInProduct
- getReactantComponent() : SpeciesTypeComponentMapInProduct
- getReaction() : FluxBound, FluxObjective, GeneAssociation
- getReactionGlyph() : Layout
- getReactionId() : ReactionGlyph
- getReal() : ASTNode
- getRed() : ColorDefinition
- getReference() : Association
- getReferencedElement() : SBaseRef
- getReferencedElementFrom() : ReplacedElement, SBaseRef
- getReferencedModel() : ExternalModelDefinition
- getReferenceGlyph() : GeneralGlyph
- getReferenceId() : GeneralGlyph, ReferenceGlyph
- getReferenceRenderInformation() : RenderInformationBase
- getReferenceRenderInformationId() : RenderInformationBase
- getRegisteredPackageName() : SBMLExtensionRegistry
- getRegisteredPackageNames() : SBMLExtensionRegistry
- getRelation() : SubListOfSpeciesFeatures
- getRelativeValue() : RelAbsVector
- getRenderInformation() : RenderLayoutPlugin, RenderListOfLayoutsPlugin
- getReplacedBy() : CompSBasePlugin
- getReplacedElement() : CompSBasePlugin
- getRepresentationType() : MultiASTPlugin
- getRequired() : SBMLDocumentPlugin
- getResolverByIndex() : SBMLResolverRegistry
- getResourceBiologicalQualifier() : SBase
- getResourceModelQualifier() : SBase
- getResources() : CVTerm
- getResourceURI() : CVTerm
- getResultLevel() : DefaultTerm, FunctionTerm
- getReversible() : Reaction
- getRightChild() : ASTNode
- getRole() : ReferenceGlyph, SpeciesReferenceGlyph
- getRoleList() : Style
- getRoleString() : SpeciesReferenceGlyph
- getRX() : Ellipse, Rectangle
- getRY() : Ellipse, Rectangle
- getSBaseRef() : SBaseRef
- getSBMLDocument() : SBase, SBasePlugin
- getSBMLErrMsg() : SBMLConstructorException
- getSBMLExtensionNamespaces() : CompExtension, FbcExtension, GroupsExtension, LayoutExtension, MultiExtension, QualExtension, RenderExtension, SBMLExtension
- getSBMLNamespaces() : XMLInputStream, XMLOutputStream
- getSBMLNamespaceURI() : SBMLNamespaces
- getSBOTerm() : SBase
- getSBOTermAsURL() : SBase
- getSBOTermID() : SBase
- getScale() : Unit
- getScheme() : SBMLUri
- getSecond() : Date
- getSemanticsAnnotation() : ASTNode
- getSeverity() : FbcExtension, VConstraint, XMLError
- getSeverityAsString() : XMLError
- getSeverityOverride() : XMLErrorLog
- getShortMessage() : FbcExtension, XMLError
- getSign() : Input
- getSignOffset() : Date
- getSize() : Compartment, List
- getSource() : ExternalModelDefinition
- getSpatialDimensions() : Compartment
- getSpatialDimensionsAsDouble() : Compartment
- getSpatialSizeUnits() : Species
- getSpecies() : SimpleSpeciesReference
- getSpeciesFeature() : MultiSpeciesPlugin
- getSpeciesFeatureType() : MultiSpeciesType, SpeciesFeature
- getSpeciesFeatureValue() : SpeciesFeature
- getSpeciesGlyph() : Layout
- getSpeciesGlyphId() : SpeciesReferenceGlyph
- getSpeciesId() : SpeciesGlyph
- getSpeciesReference() : MultiASTPlugin
- getSpeciesReferenceGlyph() : ReactionGlyph
- getSpeciesReferenceId() : SpeciesReferenceGlyph
- getSpeciesType() : MultiSpeciesPlugin, Species, SpeciesTypeInstance
- getSpeciesTypeComponentIndex() : MultiSpeciesType
- getSpeciesTypeComponentMapInProduct() : MultiSpeciesReferencePlugin
- getSpeciesTypeInstance() : MultiSpeciesType
- getSpreadMethod() : DefaultValues, GradientBase
- getSpreadMethodAsString() : DefaultValues, GradientBase
- getSpreadMethodString() : GradientBase
- getStandardMessage() : XMLError
- getStart() : LineSegment
- getStartHead() : DefaultValues, RenderCurve, RenderGroup
- getStoichiometry() : SpeciesReference
- getStoichiometryMath() : SpeciesReference
- getStopColor() : GradientStop
- getStrict() : FbcModelPlugin, FbcV1ToV2Converter
- getStringFromTypeCode() : CompExtension, FbcExtension, GroupsExtension, LayoutExtension, MultiExtension, QualExtension, RenderExtension, SBMLExtension
- getStroke() : DefaultValues, GraphicalPrimitive1D
- getStrokeDashArray() : GraphicalPrimitive1D
- getStrokeWidth() : DefaultValues, GraphicalPrimitive1D
- getStyle() : ASTNode, GlobalRenderInformation, LocalRenderInformation
- getSubGlyph() : GeneralGlyph
- getSubListOfSpeciesFeatures() : ListOfSpeciesFeatures, MultiSpeciesPlugin
- getSubmodel() : CompModelPlugin
- getSubmodelRef() : Replacing
- getSubstanceConversionFactor() : Submodel
- getSubstanceUnits() : KineticLaw, Species
- getSupportedNamespaces() : SBMLNamespaces
- getSupportedPackageURI() : SBasePluginCreatorBase, SBMLExtension
- getSymbol() : InitialAssignment
- getTargetExtensionPoint() : SBasePluginCreatorBase
- getTargetLevel() : SBMLLevelVersionConverter
- getTargetNamespaces() : ConversionProperties, SBMLConverter
- getTargetPackageName() : SBasePluginCreatorBase
- getTargetSBMLTypeCode() : SBasePluginCreatorBase
- getTargetVersion() : SBMLLevelVersionConverter
- getText() : Text, TextGlyph
- getTextAnchor() : DefaultValues, RenderGroup, Text
- getTextAnchorAsString() : DefaultValues, RenderGroup, Text
- getTextGlyph() : Layout
- getThresholdLevel() : Input
- getTimeConversionFactor() : Submodel
- getTimeUnits() : Event, KineticLaw
- getToFunctionDefinition() : SBMLRateOfConverter
- getTransform() : Transformation
- getTransformer() : CompModelPlugin
- getTransitionEffect() : Input, Output
- getTrigger() : Event
- getType() : Association, ASTNode, ConversionOption, ConversionProperties, DefinitionURLRegistry, Objective, Rule
- getTypeCode() : Association, BindingSiteSpeciesType, BoundingBox, ColorDefinition, Compartment, CompartmentGlyph, CompartmentReference, CompartmentType, Constraint, CubicBezier, Curve, DefaultTerm, DefaultValues, Delay, Deletion, Dimensions, Ellipse, Event, EventAssignment, ExternalModelDefinition, FbcAnd, FbcAssociation, FbcOr, FluxBound, FluxObjective, FunctionDefinition, FunctionTerm, GeneAssociation, GeneProduct, GeneProductAssociation, GeneProductRef, GeneralGlyph, GlobalRenderInformation, GlobalStyle, GradientBase, GradientStop, GraphicalObject, GraphicalPrimitive1D, GraphicalPrimitive2D, Group, Image, InitialAssignment, Input, InSpeciesTypeBond, IntraSpeciesReaction, KeyValuePair, KineticLaw, Layout, LinearGradient, LineEnding, LineSegment, ListOf, ListOfColorDefinitions, ListOfCompartmentReferences, ListOfCurveElements, ListOfDrawables, ListOfFbcAssociations, ListOfFluxObjectives, ListOfGeneProducts, ListOfGlobalRenderInformation, ListOfGlobalStyles, ListOfGradientDefinitions, ListOfGradientStops, ListOfGroups, ListOfInSpeciesTypeBonds, ListOfKeyValuePairs, ListOfLineEndings, ListOfLocalRenderInformation, ListOfLocalStyles, ListOfMembers, ListOfMultiSpeciesTypes, ListOfObjectives, ListOfOutwardBindingSites, ListOfPossibleSpeciesFeatureValues, ListOfSpeciesFeatures, ListOfSpeciesFeatureTypes, ListOfSpeciesFeatureValues, ListOfSpeciesTypeComponentIndexes, ListOfSpeciesTypeComponentMapInProducts, ListOfSpeciesTypeInstances, ListOfUserDefinedConstraintComponents, ListOfUserDefinedConstraints, LocalParameter, LocalRenderInformation, LocalStyle, Member, ModelDefinition, ModifierSpeciesReference, MultiSpeciesType, Objective, Output, OutwardBindingSite, Parameter, Point, Polygon, Port, PossibleSpeciesFeatureValue, Priority, QualitativeSpecies, RadialGradient, Reaction, ReactionGlyph, Rectangle, ReferenceGlyph, RenderCubicBezier, RenderCurve, RenderGroup, RenderInformationBase, RenderPoint, ReplacedBy, ReplacedElement, Rule, SBase, SBaseExtensionPoint, SBaseRef, SBMLDocument, Species, SpeciesFeature, SpeciesFeatureType, SpeciesFeatureValue, SpeciesGlyph, SpeciesReference, SpeciesReferenceGlyph, SpeciesType, SpeciesTypeComponentIndex, SpeciesTypeComponentMapInProduct, SpeciesTypeInstance, StoichiometryMath, Style, SubListOfSpeciesFeatures, Submodel, Text, TextGlyph, Transformation2D, Transformation, Transition, Trigger, Unit, UnitDefinition, UserDefinedConstraint, UserDefinedConstraintComponent
- getTypeList() : Style
- getUnit() : UnitDefinition
- getUnitRef() : SBaseRef
- getUnits() : ASTNode, Compartment, Parameter, Rule, Species
- getUpperBound() : UserDefinedConstraint
- getUpperFluxBound() : FbcReactionPlugin
- getURI() : CompExtension, FbcExtension, GroupsExtension
- getUri() : KeyValuePair
- getURI() : LayoutExtension, MultiExtension, QualExtension, RenderExtension, SBase, SBasePlugin, SBMLExtension, SBMLExtensionNamespaces< SBMLExtensionType >, SBMLNamespaces
- getUri() : SBMLUri
- getURI() : XMLAttributes, XMLNamespaces, XMLToken, XMLTriple
- getUserData() : ASTNode, ElementFilter, SBase
- getUserDefinedConstraint() : FbcModelPlugin
- getUserDefinedConstraintByLowerBound() : FbcModelPlugin
- getUserDefinedConstraintByUpperBound() : FbcModelPlugin
- getUserDefinedConstraintComponent() : UserDefinedConstraint
- getUserDefinedConstraintComponentByVariable() : UserDefinedConstraint
- getUseValuesFromTriggerTime() : Event
- getValidityFlag() : SBMLLevelVersionConverter
- getValue() : ASTNode, ColorDefinition, ConversionOption, ConversionProperties, FluxBound, KeyValuePair, Parameter, SpeciesFeatureValue, XMLAttributes
- getVariable() : EventAssignment, Rule, UserDefinedConstraintComponent
- getVariableType() : FluxObjective, UserDefinedConstraintComponent
- getVariableTypeAsString() : FluxObjective, UserDefinedConstraintComponent
- getVersion() : CompExtension, FbcExtension, GroupsExtension, LayoutExtension, MultiExtension, QualExtension, RenderExtension, SBase, SBasePlugin, SBMLExtension, SBMLNamespaces, XMLInputStream
- getVersionString() : ListOfGlobalRenderInformation, ListOfLocalRenderInformation
- getVolume() : Compartment
- getVTextAnchor() : DefaultValues, RenderGroup, Text
- getVTextAnchorAsString() : DefaultValues, RenderGroup, Text
- getWidth() : Dimensions, Image, Rectangle
- getWriteComment() : XMLOutputStream
- getWriteTimestamp() : XMLOutputStream
- getX() : Image, Rectangle, RenderPoint, Text
- getX1() : LinearGradient
- getX2() : LinearGradient
- getXmlns() : ListOfKeyValuePairs
- getXmlnsL2() : LayoutExtension, RenderExtension
- getXmlnsL3V1V1() : CompExtension, FbcExtension, GroupsExtension, LayoutExtension, MultiExtension, QualExtension, RenderExtension
- getXmlnsL3V1V2() : FbcExtension
- getXmlnsL3V1V3() : FbcExtension
- getXmlnsXSI() : LayoutExtension
- getXOffset() : Point
- getXPoint1() : LinearGradient
- getXPoint2() : LinearGradient
- getY() : Image, Rectangle, RenderPoint, Text
- getY1() : LinearGradient
- getY2() : LinearGradient
- getYear() : Date
- getYOffset() : Point
- getYPoint1() : LinearGradient
- getYPoint2() : LinearGradient
- getZ() : Image, Rectangle, RenderPoint, Text
- getZ1() : LinearGradient
- getZ2() : LinearGradient
- getZOffset() : Point
- getZOffsetExplicitlySet() : Point
- getZPoint1() : LinearGradient
- getZPoint2() : LinearGradient
- GlobalRenderInformation() : GlobalRenderInformation
- GlobalStyle() : GlobalStyle
- GradientBase() : GradientBase, ListOfGradientStops
- GradientStop() : GradientStop
- GraphicalObject() : GraphicalObject
- GraphicalPrimitive1D() : GraphicalPrimitive1D
- GraphicalPrimitive2D() : GraphicalPrimitive2D
- Group() : Group
- GroupsExtension() : GroupsExtension
- GroupsModelPlugin() : GroupsModelPlugin
- GroupsSBMLDocumentPlugin() : GroupsSBMLDocumentPlugin
- GroupsValidator() : GroupsValidator