Package org.jmol.jvxl.data
Class JvxlData
java.lang.Object
org.jmol.jvxl.data.JvxlData
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Field Summary
FieldsModifier and TypeFieldDescriptionboolean
javajs.util.P3[]
boolean
int
int
short[]
float[]
float[]
float
float[]
float
float
int
int
int
int
int
javajs.util.P3
boolean
float
boolean
boolean
boolean
boolean
boolean
boolean
boolean
boolean
boolean
boolean
boolean
boolean
boolean
javajs.util.BS[]
javajs.util.P4
javajs.util.P3
float
float
short
short
long
int
int
int
int
int
int
int
float
float
int
javajs.util.SB
float
int
int
javajs.util.BS
String[]
float
float
float
javajs.util.Lst<Object>[]
int[]
int
boolean
float
boolean
boolean
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionvoid
clear()
void
jvxlUpdateInfo
(String[] title, long nBytes) void
setSurfaceInfo
(javajs.util.P4 thePlane, javajs.util.P3 mapLattice, int nSurfaceInts, String surfaceData) void
setSurfaceInfoFromBitSet
(javajs.util.BS bs, javajs.util.P4 thePlane) void
setSurfaceInfoFromBitSetPts
(javajs.util.BS bs, javajs.util.P4 thePlane, javajs.util.P3 mapLattice) static String
updateSurfaceData
(String edgeData, float[] vertexValues, int vertexCount, int vertexIncrement, char isNaN)
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Field Details
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msg
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wasJvxl
public boolean wasJvxl -
wasCubic
public boolean wasCubic -
jvxlFileSource
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jvxlFileTitle
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jvxlFileMessage
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jvxlSurfaceData
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jvxlEdgeData
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jvxlColorData
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jvxlVolumeDataXml
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jvxlExcluded
public javajs.util.BS[] jvxlExcluded -
jvxlPlane
public javajs.util.P4 jvxlPlane -
isJvxlPrecisionColor
public boolean isJvxlPrecisionColor -
jvxlDataIsColorMapped
public boolean jvxlDataIsColorMapped -
jvxlDataIs2dContour
public boolean jvxlDataIs2dContour -
jvxlDataIsColorDensity
public boolean jvxlDataIsColorDensity -
isColorReversed
public boolean isColorReversed -
thisSet
public javajs.util.BS thisSet -
edgeFractionBase
public int edgeFractionBase -
edgeFractionRange
public int edgeFractionRange -
colorFractionBase
public int colorFractionBase -
colorFractionRange
public int colorFractionRange -
isValid
public boolean isValid -
insideOut
public boolean insideOut -
isXLowToHigh
public boolean isXLowToHigh -
isContoured
public boolean isContoured -
isBicolorMap
public boolean isBicolorMap -
isTruncated
public boolean isTruncated -
isCutoffAbsolute
public boolean isCutoffAbsolute -
isModelConnected
public boolean isModelConnected -
vertexDataOnly
public boolean vertexDataOnly -
mappedDataMin
public float mappedDataMin -
mappedDataMax
public float mappedDataMax -
valueMappedToRed
public float valueMappedToRed -
valueMappedToBlue
public float valueMappedToBlue -
cutoff
public float cutoff -
cutoffRange
public float[] cutoffRange -
pointsPerAngstrom
public float pointsPerAngstrom -
nPointsX
public int nPointsX -
nPointsY
public int nPointsY -
nPointsZ
public int nPointsZ -
nBytes
public long nBytes -
nContours
public int nContours -
nEdges
public int nEdges -
nSurfaceInts
public int nSurfaceInts -
vertexCount
public int vertexCount -
vContours
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contourColixes
public short[] contourColixes -
contourColors
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contourValues
public float[] contourValues -
contourValuesUsed
public float[] contourValuesUsed -
thisContour
public int thisContour -
scale3d
public float scale3d -
minColorIndex
public short minColorIndex -
maxColorIndex
public short maxColorIndex -
title
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version
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boundingBox
public javajs.util.P3[] boundingBox -
excludedTriangleCount
public int excludedTriangleCount -
excludedVertexCount
public int excludedVertexCount -
colorDensity
public boolean colorDensity -
pointSize
public float pointSize -
moleculeXml
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dataMin
public float dataMin -
dataMax
public float dataMax -
saveVertexCount
public int saveVertexCount -
vertexColorMap
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nVertexColors
public int nVertexColors -
vertexColors
public int[] vertexColors -
color
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meshColor
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translucency
public float translucency -
colorScheme
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rendering
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slabValue
public int slabValue -
isSlabbable
public boolean isSlabbable -
diameter
public int diameter -
slabInfo
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allowVolumeRender
public boolean allowVolumeRender -
voxelVolume
public float voxelVolume -
mapLattice
public javajs.util.P3 mapLattice -
fixedLattice
public javajs.util.P3 fixedLattice -
baseColor
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integration
public float integration -
sbOut
public javajs.util.SB sbOut
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Constructor Details
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JvxlData
public JvxlData()
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Method Details
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clear
public void clear() -
setSurfaceInfo
public void setSurfaceInfo(javajs.util.P4 thePlane, javajs.util.P3 mapLattice, int nSurfaceInts, String surfaceData) -
setSurfaceInfoFromBitSet
public void setSurfaceInfoFromBitSet(javajs.util.BS bs, javajs.util.P4 thePlane) -
setSurfaceInfoFromBitSetPts
public void setSurfaceInfoFromBitSetPts(javajs.util.BS bs, javajs.util.P4 thePlane, javajs.util.P3 mapLattice) -
jvxlUpdateInfo
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updateSurfaceData
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