Uses of Enum Class
jebl.evolution.trees.TreeBuilderFactory.DistanceModel
Packages that use TreeBuilderFactory.DistanceModel
Package
Description
Provides classes and interfaces for pairwise alignment of two sequences.
-
Uses of TreeBuilderFactory.DistanceModel in jebl.evolution.align
Methods in jebl.evolution.align that return TreeBuilderFactory.DistanceModelModifier and TypeMethodDescriptionSequenceAlignmentsDistanceMatrix.getDefaultDistanceModel
(List<Sequence> seqs) Methods in jebl.evolution.align with parameters of type TreeBuilderFactory.DistanceModelModifier and TypeMethodDescriptionAlignmentTreeBuilderFactory.build
(List<Sequence> seqs, TreeBuilderFactory.Method method, PairwiseAligner aligner, ProgressListener progressListener, TreeBuilderFactory.DistanceModel model) AlignmentTreeBuilderFactory.build
(Alignment alignment, TreeBuilderFactory.Method method, TreeBuilderFactory.DistanceModel model, ProgressListener progressListener) AlignmentTreeBuilderFactory.build
(Alignment alignment, TreeBuilderFactory.Method method, TreeBuilderFactory.DistanceModel model, ProgressListener progressListener, boolean useTwiceMaximumDistanceWhenPairwiseDistanceNotCalculatable) Constructors in jebl.evolution.align with parameters of type TreeBuilderFactory.DistanceModelModifierConstructorDescriptionSequenceAlignmentsDistanceMatrix
(List<Sequence> seqs, PairwiseAligner aligner, ProgressListener progress, TreeBuilderFactory.DistanceModel model) -
Uses of TreeBuilderFactory.DistanceModel in jebl.evolution.trees
Methods in jebl.evolution.trees that return TreeBuilderFactory.DistanceModelModifier and TypeMethodDescriptionReturns the enum constant of this class with the specified name.static TreeBuilderFactory.DistanceModel[]
TreeBuilderFactory.DistanceModel.values()
Returns an array containing the constants of this enum class, in the order they are declared.