abydos.compression package

abydos.compression.

The compression package defines compression and compression-related functions for use within Abydos, including implementations of the following:

Arithmetic for arithmetic coding

BWT for Burrows-Wheeler Transform

RLE for Run-Length Encoding

Each class exposes encode and decode methods for performing and reversing its encoding. For example, the Burrows-Wheeler Transform can be performed by creating a BWT object and then calling BWT.encode() on a string:

>>> bwt = BWT()
>>> bwt.encode('^BANANA')
'ANNB^AA\x00'

class abydos.compression.Arithmetic(text: Optional[str] = None)[source]

Bases: object

Arithmetic Coder.

This is based on Andrew Dalke's public domain implementation [Dal05]. It has been ported to use the fractions.Fraction class.

New in version 0.3.6.

Initialize arithmetic coder object.

Parameters:: text (str or None) -- The training text

New in version 0.3.6.

decode(longval: int, nbits: int) → str[source]

Decode the number to a string using the given statistics.

Parameters:

longval (int) -- The first part of an encoded tuple from encode
nbits (int) -- The second part of an encoded tuple from encode

Returns:

The arithmetically decoded text

Return type:

str

Example

>>> ac = Arithmetic('the quick brown fox jumped over the lazy dog')
>>> ac.decode(16720586181, 34)
'align'

New in version 0.1.0.

Changed in version 0.3.6: Encapsulated in class

encode(text: str) → Tuple[int, int][source]

Encode a text using arithmetic coding.

Text and the 0-order probability statistics -> longval, nbits

The encoded number is Fraction(longval, 2**nbits)

Parameters:: text (str) -- A string to encode
Returns:: The arithmetically coded text
Return type:: tuple

Example

>>> ac = Arithmetic('the quick brown fox jumped over the lazy dog')
>>> ac.encode('align')
(16720586181, 34)

New in version 0.1.0.

Changed in version 0.3.6: Encapsulated in class

get_probs() → Dict[str, Tuple[Fraction, Fraction]][source]

Return the probs dictionary.

Returns:: The dictionary of probabilities
Return type:: dict

New in version 0.3.6.

set_probs(probs: Dict[str, Tuple[Fraction, Fraction]]) → None[source]

Set the probs dictionary.

Parameters:: probs (dict) -- The dictionary of probabilities

New in version 0.3.6.

train(text: str) → None[source]

Generate a probability dict from the provided text.

Text to 0-order probability statistics as a dict

Parameters:: text (str) -- The text data over which to calculate probability statistics. This must not contain the NUL (0x00) character because that is used to indicate the end of data.

Example

>>> ac = Arithmetic()
>>> ac.train('the quick brown fox jumped over the lazy dog')
>>> ac.get_probs()
{' ': (Fraction(0, 1), Fraction(8, 45)),
 'o': (Fraction(8, 45), Fraction(4, 15)),
 'e': (Fraction(4, 15), Fraction(16, 45)),
 'u': (Fraction(16, 45), Fraction(2, 5)),
 't': (Fraction(2, 5), Fraction(4, 9)),
 'r': (Fraction(4, 9), Fraction(22, 45)),
 'h': (Fraction(22, 45), Fraction(8, 15)),
 'd': (Fraction(8, 15), Fraction(26, 45)),
 'z': (Fraction(26, 45), Fraction(3, 5)),
 'y': (Fraction(3, 5), Fraction(28, 45)),
 'x': (Fraction(28, 45), Fraction(29, 45)),
 'w': (Fraction(29, 45), Fraction(2, 3)),
 'v': (Fraction(2, 3), Fraction(31, 45)),
 'q': (Fraction(31, 45), Fraction(32, 45)),
 'p': (Fraction(32, 45), Fraction(11, 15)),
 'n': (Fraction(11, 15), Fraction(34, 45)),
 'm': (Fraction(34, 45), Fraction(7, 9)),
 'l': (Fraction(7, 9), Fraction(4, 5)),
 'k': (Fraction(4, 5), Fraction(37, 45)),
 'j': (Fraction(37, 45), Fraction(38, 45)),
 'i': (Fraction(38, 45), Fraction(13, 15)),
 'g': (Fraction(13, 15), Fraction(8, 9)),
 'f': (Fraction(8, 9), Fraction(41, 45)),
 'c': (Fraction(41, 45), Fraction(14, 15)),
 'b': (Fraction(14, 15), Fraction(43, 45)),
 'a': (Fraction(43, 45), Fraction(44, 45)),
 '\x00': (Fraction(44, 45), Fraction(1, 1))}

New in version 0.1.0.

Changed in version 0.3.6: Encapsulated in class

class abydos.compression.BWT(terminator: str = '\x00')[source]

Bases: object

Burrows-Wheeler Transform.

The Burrows-Wheeler transform is an attempt at placing similar characters together to improve compression. Cf. [BW94].

New in version 0.3.6.

Initialize BWT instance.

Parameters:: terminator (str) -- A character added to signal the end of the string

New in version 0.4.0.

decode(code: str) → str[source]

Return a word decoded from BWT form.

Parameters:: code (str) -- The word to transform from BWT form
Returns:: Word decoded by BWT
Return type:: str
Raises:: ValueError -- Specified terminator absent from code.

Examples

>>> bwt = BWT()
>>> bwt.decode('n\x00ilag')
'align'
>>> bwt.decode('annb\x00aa')
'banana'

>>> bwt = BWT('@')
>>> bwt.decode('annb@aa')
'banana'

New in version 0.1.0.

Changed in version 0.3.6: Encapsulated in class

encode(word: str) → str[source]

Return the Burrows-Wheeler transformed form of a word.

Parameters:: word (str) -- The word to transform using BWT
Returns:: Word encoded by BWT
Return type:: str
Raises:: ValueError -- Specified terminator absent from code.

Examples

>>> bwt = BWT()
>>> bwt.encode('align')
'n\x00ilag'
>>> bwt.encode('banana')
'annb\x00aa'

>>> bwt = BWT('@')
>>> bwt.encode('banana')
'annb@aa'

New in version 0.1.0.

Changed in version 0.3.6: Encapsulated in class

class abydos.compression.RLE[source]

Bases: object

Run-Length Encoding.

Cf. [RC67].

Based on http://rosettacode.org/wiki/Run-length_encoding#Python [Cod18b]. This is licensed GFDL 1.2.

Digits 0-9 cannot be in text.

New in version 0.3.6.

decode(text: str) → str[source]

Perform decoding of run-length-encoding (RLE).

Parameters:: text (str) -- A text string to decode
Returns:: Word decoded by RLE
Return type:: str

Examples

>>> from abydos.compression import BWT
>>> rle = RLE()
>>> bwt = BWT()
>>> bwt.decode(rle.decode('n\x00ilag'))
'align'
>>> rle.decode('align')
'align'

>>> bwt.decode(rle.decode('annb\x00aa'))
'banana'
>>> rle.decode('banana')
'banana'

>>> bwt.decode(rle.decode('ab\x00abbab5a'))
'aaabaabababa'
>>> rle.decode('3abaabababa')
'aaabaabababa'

New in version 0.1.0.

Changed in version 0.3.6: Encapsulated in class

encode(text: str) → str[source]

Perform encoding of run-length-encoding (RLE).

Parameters:: text (str) -- A text string to encode
Returns:: Word decoded by RLE
Return type:: str

Examples

>>> from abydos.compression import BWT
>>> rle = RLE()
>>> bwt = BWT()
>>> rle.encode(bwt.encode('align'))
'n\x00ilag'
>>> rle.encode('align')
'align'

>>> rle.encode(bwt.encode('banana'))
'annb\x00aa'
>>> rle.encode('banana')
'banana'

>>> rle.encode(bwt.encode('aaabaabababa'))
'ab\x00abbab5a'
>>> rle.encode('aaabaabababa')
'3abaabababa'

New in version 0.1.0.

Changed in version 0.3.6: Encapsulated in class