Package picard.vcf.filter
Class GenotypeQualityFilter
java.lang.Object
picard.vcf.filter.GenotypeQualityFilter
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GenotypeFilter
Genotype filter that filters out genotypes below a given quality threshold.
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Constructor Summary
Constructors -
Method Summary
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Constructor Details
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GenotypeQualityFilter
public GenotypeQualityFilter(int minGq)
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Method Details
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filter
public String filter(htsjdk.variant.variantcontext.VariantContext ctx, htsjdk.variant.variantcontext.Genotype gt) Description copied from interface:GenotypeFilter
Test whether or not the genotype should be filtered out. If so return a filter string, otherwise return null.- Specified by:
filter
in interfaceGenotypeFilter
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