Enum Class ReadBaseStratification.Consensus

java.lang.Object
java.lang.Enum<ReadBaseStratification.Consensus>
picard.sam.SamErrorMetric.ReadBaseStratification.Consensus
All Implemented Interfaces:
Serializable, Comparable<ReadBaseStratification.Consensus>, Constable
Enclosing class:
ReadBaseStratification

public static enum ReadBaseStratification.Consensus extends Enum<ReadBaseStratification.Consensus>
Types of consensus reads as determined by the number of duplicates used from first and second strands.
  • SIMPLEX_SINGLETON
  • SIMPLEX_CONSENSUS
  • DUPLEX_SINGLETON
  • DUPLEX_CONSENSUS
  • UNKNOWN
    • Enum Constant Details

      • SIMPLEX_SINGLETON

        public static final ReadBaseStratification.Consensus SIMPLEX_SINGLETON
        Read which only one observation is made. In a sense, these are not consensus reads.
      • SIMPLEX_CONSENSUS

        public static final ReadBaseStratification.Consensus SIMPLEX_CONSENSUS
        Read which had multiple observations, but all from the same strand (or the strand could not be determined).
      • DUPLEX_SINGLETON

        public static final ReadBaseStratification.Consensus DUPLEX_SINGLETON
        Read which has two observations, one from each direction.
      • DUPLEX_CONSENSUS

        public static final ReadBaseStratification.Consensus DUPLEX_CONSENSUS
        Consensus read which has two or more observations in both directions.
      • UNKNOWN

        public static final ReadBaseStratification.Consensus UNKNOWN
        Read whose consensus status cannot be determined.
    • Method Details

      • values

        public static ReadBaseStratification.Consensus[] values()
        Returns an array containing the constants of this enum class, in the order they are declared.
        Returns:
        an array containing the constants of this enum class, in the order they are declared
      • valueOf

        public static ReadBaseStratification.Consensus valueOf(String name)
        Returns the enum constant of this class with the specified name. The string must match exactly an identifier used to declare an enum constant in this class. (Extraneous whitespace characters are not permitted.)
        Parameters:
        name - the name of the enum constant to be returned.
        Returns:
        the enum constant with the specified name
        Throws:
        IllegalArgumentException - if this enum class has no constant with the specified name
        NullPointerException - if the argument is null