Package picard.filter

Class CountingAdapterFilter

java.lang.Object
picard.filter.CountingFilter
picard.filter.CountingAdapterFilter
All Implemented Interfaces:
htsjdk.samtools.filter.SamRecordFilter

public class CountingAdapterFilter extends CountingFilter
Counting filter that discards reads are unaligned or aligned with MQ==0 and whose 5' ends look like adapter Sequence
  • Constructor Details

    • CountingAdapterFilter

      public CountingAdapterFilter()
  • Method Details

    • reallyFilterOut

      public boolean reallyFilterOut(htsjdk.samtools.SAMRecord record)
      Description copied from class: CountingFilter
      Return true if we are to filter this record out, false otherwise.
      Specified by:
      reallyFilterOut in class CountingFilter