Package picard.vcf

Class GenotypeConcordanceStates

java.lang.Object
picard.vcf.GenotypeConcordanceStates

public class GenotypeConcordanceStates extends Object
A class to store the various classifications for: 1. a truth genotype versus a reference 2. a call genotype versus a truth, relative to a reference An example use of this class is to have one instance per following use case: - SNPs - indels - filtered variant (truth or call) - filtered genotype (truth or call) - low GQ (call) - low DP (call) - No call (truth or call) - No variant (truth or call) *
  • Constructor Details

    • GenotypeConcordanceStates

      public GenotypeConcordanceStates()