Class CollectHiSeqXPfFailMetrics.PFFailDetailedMetric

java.lang.Object
htsjdk.samtools.metrics.MetricBase
picard.illumina.quality.CollectHiSeqXPfFailMetrics.PFFailDetailedMetric
Enclosing class:
CollectHiSeqXPfFailMetrics

@DocumentedFeature(groupName="Metrics", summary="Metrics") public static class CollectHiSeqXPfFailMetrics.PFFailDetailedMetric extends htsjdk.samtools.metrics.MetricBase
a metric class for describing FP failing reads from an Illumina HiSeqX lane *
  • Field Details

    • TILE

      public Integer TILE
      The Tile that is described by this metric
    • X

      public int X
      The X coordinate of the read within the tile
    • Y

      public int Y
      The Y coordinate of the read within the tile
    • NUM_N

      public int NUM_N
      The number of Ns found in this read
    • NUM_Q_GT_TWO

      public int NUM_Q_GT_TWO
      The number of Quality scores greater than 2 found in this read
    • CLASSIFICATION

      The classification of this read: {EMPTY, POLYCLONAL, MISALIGNED, UNKNOWN} (See PFFailSummaryMetric for explanation regarding the possible classification.)
  • Constructor Details