Package picard.sam.SamErrorMetric
Class ReadBaseStratification.MismatchesInReadStratifier
java.lang.Object
picard.sam.SamErrorMetric.ReadBaseStratification.MismatchesInReadStratifier
- All Implemented Interfaces:
ReadBaseStratification.RecordAndOffsetStratifier<Integer>
- Enclosing class:
ReadBaseStratification
public static class ReadBaseStratification.MismatchesInReadStratifier
extends Object
implements ReadBaseStratification.RecordAndOffsetStratifier<Integer>
Stratifies according to the overall mismatches (from
SAMTag.NM
) that the read has against the reference, NOT
including the current base.-
Constructor Summary
Constructors -
Method Summary
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Constructor Details
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MismatchesInReadStratifier
public MismatchesInReadStratifier()
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Method Details
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stratify
public Integer stratify(htsjdk.samtools.util.SamLocusIterator.RecordAndOffset recordAndOffset, htsjdk.samtools.reference.SamLocusAndReferenceIterator.SAMLocusAndReference locusInfo) - Specified by:
stratify
in interfaceReadBaseStratification.RecordAndOffsetStratifier<Integer>
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getSuffix
- Specified by:
getSuffix
in interfaceReadBaseStratification.RecordAndOffsetStratifier<Integer>
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