libStatGen Software 1
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Main.cpp
1/*
2 * Copyright (C) 2010 Regents of the University of Michigan
3 *
4 * This program is free software: you can redistribute it and/or modify
5 * it under the terms of the GNU General Public License as published by
6 * the Free Software Foundation, either version 3 of the License, or
7 * (at your option) any later version.
8 *
9 * This program is distributed in the hope that it will be useful,
10 * but WITHOUT ANY WARRANTY; without even the implied warranty of
11 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
12 * GNU General Public License for more details.
13 *
14 * You should have received a copy of the GNU General Public License
15 * along with this program. If not, see <http://www.gnu.org/licenses/>.
16 */
17
18#include <iostream>
19#include <string.h>
20#include <stdlib.h>
21
22#include "PrintRefPositions.h"
23
24int main(int argc, char ** argv)
25{
26 std::string inFile = "../../test/testFiles/sortedBam.bam";
27 std::string indexFile = "../../test/testFiles/sortedBam.bam.bai";
28 std::string rname = "1";
29 int startPosition = 1013;
30 int endPosition = 1751;
31 if(argc == 6)
32 {
33 inFile = argv[1];
34 indexFile = argv[2];
35 rname = argv[3];
36 startPosition = atoi(argv[4]);
37 endPosition = atoi(argv[5]);
38 }
39 printRefPositions(inFile, indexFile, rname, startPosition, endPosition);
40 return(0);
41}
42
43
44