19#include "WriteFiles.h"
20#include "ValidationTest.h"
21#include "BamIndexTest.h"
24#include "SamFileTest.h"
25#include "TestEquals.h"
26#include "TestFilter.h"
27#include "ShiftIndels.h"
28#include "TestPileup.h"
29#include "TestPosList.h"
30#include "TestCigarHelper.h"
31#include "TestSamRecordPool.h"
32#include "TestSamCoordOutput.h"
33#include "TestSamRecordHelper.h"
35int main(
int argc,
char ** argv)
40#ifdef __ZLIB_AVAILABLE__
44 testAddHeaderAndTagToFile(
"testFiles/testSam.sam",
45 "results/addedTagToSam.bam");
46 testAddHeaderAndTagToFile(
"testFiles/testSam.sam",
47 "results/addedTagToSam.sam");
49#ifdef __ZLIB_AVAILABLE__
50 testAddHeaderAndTagToFile(
"testFiles/testBam.bam",
51 "results/addedTagToBam.sam");
52 testAddHeaderAndTagToFile(
"testFiles/testBam.bam",
53 "results/addedTagToBam.bam");
56 testValidateSortedRead();
65#ifdef __ZLIB_AVAILABLE__
87 testSamRecordHelper();
91 modifyFirstBaseLong();