ProteoWizard
cv.hpp
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1//
2// $Id$
3//
4//
5// Darren Kessner <darren@proteowizard.org>
6//
7// Copyright 2007 Spielberg Family Center for Applied Proteomics
8// Cedars-Sinai Medical Center, Los Angeles, California 90048
9//
10// Licensed under the Apache License, Version 2.0 (the "License");
11// you may not use this file except in compliance with the License.
12// You may obtain a copy of the License at
13//
14// http://www.apache.org/licenses/LICENSE-2.0
15//
16// Unless required by applicable law or agreed to in writing, software
17// distributed under the License is distributed on an "AS IS" BASIS,
18// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
19// See the License for the specific language governing permissions and
20// limitations under the License.
21//
22// This file was generated by cvgen.
23//
24// Do not edit this file! Your changes will be lost next time cvgen is run -
25// see pwiz/scripts/misc/update_cv.bat for info on how that works.
26// Instead, edit cvgen.cpp itself, or the cv.inl include file if adding static
27// code or data.
28//
29
30
31#ifndef _CV_HPP_
32#define _CV_HPP_
33
34
35#include <string>
36#include <vector>
37#include <map>
39
40
41// [psi-ms.obo]
42#define _PSI_MS_OBO_
43// format-version: 1.2
44// data-version: 4.1.12
45// date: 24:07:2018 14:50
46// saved-by: Gerhard Mayer
47// auto-generated-by: OBO-Edit 2.3.1
48// import: http://ontologies.berkeleybop.org/pato.obo
49// import: http://ontologies.berkeleybop.org/uo.obo
50// default-namespace: MS
51// namespace-id-rule: * MS:$sequence(7,0,9999999)$
52// namespace-id-rule: * PEFF:$sequence(7,0,9999999)$
53// remark: namespace: MS
54// remark: namespace: PEFF
55// remark: coverage: Mass spectrometer output files and spectra interpretation
56// remark: creator: Matt Chambers <matt.chambers <-at-> vanderbilt.edu>
57// remark: creator: Andreas Bertsch <bertsch <-at-> informatik.uni-tuebingen.de>
58// remark: creator: Marius Kallhardt <Marius.Kallhardt <-at-> bdal.de>
59// remark: creator: Eric Deutsch <edeutsch <-at-> systemsbiology.org>
60// remark: creator: Fredrik Levander <fredrik.levander <-at-> immun.lth.se>
61// remark: creator: Pierre-Alain Binz <pierre-alain.binz <-at-> chuv.ch>
62// remark: creator: Gerhard Mayer <mayerg97 <-at-> rub.de>
63// remark: publisher: HUPO Proteomics Standards Initiative Mass Spectrometry Standards Working Group and HUPO Proteomics Standards Initiative Proteomics Informatics Working Group
64// remark: When appropriate the definition and synonyms of a term are reported exactly as in the chapter 12 of IUPAC orange book. See http://www.iupac.org/projects/2003/2003-056-2-500.html and http://mass-spec.lsu.edu/msterms/index.php/Main_Page
65// remark: For any queries contact psidev-ms-vocab@lists.sourceforge.net
66// remark: URL: https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/psi-ms.obo
67// remark: This work is licensed under the Creative Commons Attribution 4.0 International (CC BY 4.0) license.
68// remark: To view a copy of this license, visit https://creativecommons.org/licenses/by/4.0/ or send a letter to Creative Commons, 444 Castro Street, Suite 900, Mountain View, California, 94041, USA.
69// ontology: ms
70//
71// [unimod.obo]
72#define _UNIMOD_OBO_
73// format-version: 1.2
74// date: 2018:08:13 13:42
75//
76// [unit.obo]
77#define _UNIT_OBO_
78// format-version: 1.2
79// date: 09:04:2014 13:37
80// saved-by: gkoutos
81// auto-generated-by: OBO-Edit 2.1-beta19
82// subsetdef: abnormal_slim "Abnormal/normal slim"
83// subsetdef: absent_slim "Absent/present slim"
84// subsetdef: attribute_slim "Attribute slim"
85// subsetdef: cell_quality "cell_quality"
86// subsetdef: disposition_slim "Disposition slim"
87// subsetdef: mpath_slim "Pathology slim"
88// subsetdef: prefix_slim "prefix slim"
89// subsetdef: relational_slim "Relational slim: types of quality that require an additional entity in order to exist"
90// subsetdef: scalar_slim "Scalar slim"
91// subsetdef: unit_group_slim "unit group slim"
92// subsetdef: unit_slim "unit slim"
93// subsetdef: value_slim "Value slim"
94// default-namespace: quality
95// namespace-id-rule: * UO:$sequence(7,0,9999999)$
96// remark: Filtered by Ancestor ID equals "UO:0000000"
97// ontology: uo
98// ontology: pato
99// ontology: pato
100// ontology: pato
101// ontology: pato
102// ontology: pato
103// ontology: pato
104//
105
106
107namespace pwiz {
108namespace cv {
109
110
111/// enumeration of controlled vocabulary (CV) terms, generated from OBO file(s)
112enum PWIZ_API_DECL CVID
113{
115
116 /// Proteomics Standards Initiative Mass Spectrometry Vocabularies: Proteomics Standards Initiative Mass Spectrometry Vocabularies.
118
119 /// PEFF CV term: PSI Extended FASTA Format Controlled Vocabulary term.
120 PEFF_PEFF_CV_term = 100000001,
121
122 /// File Header Section term: CV term that may appear in a PEFF File Header Section.
124
125 /// Individual Sequence Entries Section term: CV term that may appear in a PEFF Individual Entry Section.
127
128 /// DbName: Sequence Database Name.
129 PEFF_DbName = 100000008,
130
131 /// Prefix: Sequence Database Prefix.
132 PEFF_Prefix = 100000009,
133
134 /// DbDescription: Sequence Database Short description.
136
137 /// Decoy: Specifies whether the Sequence Database is a Decoy.
138 PEFF_Decoy = 100000011,
139
140 /// DbSource: Source of the database file.
141 PEFF_DbSource = 100000012,
142
143 /// DbVersion: Database version (release date) according to database provider.
144 PEFF_DbVersion = 100000013,
145
146 /// DbDate: Database date (release or file date of the source) according to database provider.
148
149 /// NumberOfEntries: Number of sequence entries in the database.
151
152 /// Conversion: Description of the conversion from original format to this current one.
153 PEFF_Conversion = 100000016,
154
155 /// SequenceType: Molecular type of the sequences.
156 PEFF_SequenceType = 100000017,
157
158 /// SpecificKey: Db specific information (not included in the current list of allowed keys).
159 PEFF_SpecificKey = 100000018,
160
161 /// SpecificValue: PEFF specific values for a defined key.
163
164 /// DatabaseDescription: Short Description of the PEFF.
166
167 /// GeneralComment: PEFF file general comment.
169
170 /// ProteoformDb: Proteoform database flag.
171 PEFF_ProteoformDb = 100000022,
172
173 /// CustomTag: A tag (short string) used to categorize a sequence annotation (variant or modification).
174 PEFF_CustomTag = 100000023,
175
176 /// DbUniqueId: Sequence Database unique identifier.
177 PEFF_DbUniqueId = 100001001,
178
179 /// PName: Protein Name, description.
180 PEFF_PName = 100001002,
181
182 /// NcbiTaxId: NCBI taxonomy identifier.
183 PEFF_NcbiTaxId = 100001003,
184
185 /// TaxName: Taxonomy name (latin or common name).
186 PEFF_TaxName = 100001004,
187
188 /// GName: Gene name.
189 PEFF_GName = 100001005,
190
191 /// Length: Sequence length.
192 PEFF_Length = 100001006,
193
194 /// SV: Sequence version.
195 PEFF_SV = 100001007,
196
197 /// EV: Entry version.
198 PEFF_EV = 100001008,
199
200 /// PE: Protein Evidence; A UniprotKB code.
201 PEFF_PE = 100001009,
202
203 /// Processed: Processed Molecule.
204 PEFF_Processed = 100001010,
205
206 /// Variant: DEPRECATED in favor of VariantSimple and VariantComplex. Former definition: Sequence variation (substitution, insertion, deletion).
207 PEFF_Variant = 100001011,
208
209 /// ModResPsi: Modified residue with PSI-MOD identifier.
210 PEFF_ModResPsi = 100001012,
211
212 /// ModRes: Modified residue without PSI-MOD identifier.
213 PEFF_ModRes = 100001013,
214
215 /// AltAC: Alternative Accession Code.
216 PEFF_AltAC = 100001014,
217
218 /// SeqStatus: Sequence Status. Complete or Fragment.
219 PEFF_SeqStatus = 100001015,
220
221 /// CC: Entry associated comment.
222 PEFF_CC = 100001016,
223
224 /// KW: Entry associated keyword(s).
225 PEFF_KW = 100001017,
226
227 /// GO: Gene Ontology code.
228 PEFF_GO = 100001018,
229
230 /// XRef: Cross-reference to an external resource.
231 PEFF_XRef = 100001019,
232
233 /// Chain: Sequence range of active processed polypeptide.
234 PEFF_Chain = 100001020,
235
236 /// Signal: Sequence range of signal peptide.
237 PEFF_Signal = 100001021,
238
239 /// Transit: Sequence range of transit peptide.
240 PEFF_Transit = 100001022,
241
242 /// Conflict: Sequence conflict; a UniProtKB term.
243 PEFF_Conflict = 100001023,
244
245 /// Crc64: Sequence checksum in crc64.
246 PEFF_Crc64 = 100001024,
247
248 /// Domain: Sequence range of a domain.
249 PEFF_Domain = 100001025,
250
251 /// ID: UniProtKB specific Protein identifier ID; a UniProtKB term.
252 PEFF_ID = 100001026,
253
254 /// ModResUnimod: Modified residue with Unimod identifier.
255 PEFF_ModResUnimod = 100001027,
256
257 /// VariantSimple: Simple sequence variation of a single amino acid change. A change to a stop codon is permitted with a * symbol. More complex variations must be encoded with the VariantComplex term.
259
260 /// VariantComplex: Simple sequence variation of a single amino acid change. A change to a stop codon is permitted with a * symbol. More complex variations must be encoded with the VariantComplex term.
262
263 /// sample number: A reference number relevant to the sample under study.
265
266 /// sample name: A reference string relevant to the sample under study.
267 MS_sample_name = 1000002,
268
269 /// sample state: The chemical phase of a pure sample, or the state of a mixed sample.
271
272 /// sample mass: Total mass of sample used.
273 MS_sample_mass = 1000004,
274
275 /// sample volume: Total volume of solution used.
277
278 /// sample concentration: Concentration of sample in picomol/ul, femtomol/ul or attomol/ul solution used.
280
281 /// inlet type: The nature of the sample inlet.
282 MS_inlet_type = 1000007,
283
284 /// ionization type: The method by which gas phase ions are generated from the sample.
286
287 /// ionization mode: Whether positive or negative ions are selected for analysis by the spectrometer.
289
290 /// analyzer type: The common name of the particular analyzer stage being described. Synonym of mass analyzer, should be obsoleted.
292
293 /// mass resolution: Smallest mass difference between two equal magnitude peaks so that the valley between them is a specified fraction of the peak height.
295
296 /// resolution measurement method: Which of the available standard measures is used to define whether two peaks are separate.
298
299 /// resolution type: Specify the nature of resolution for the mass analyzer. Resolution is usually either constant with respect to m/z or proportional to m/z.
301
302 /// accuracy: Accuracy is the degree of conformity of a measured mass to its actual value.
303 MS_accuracy = 1000014,
304
305 /// scan rate: Rate in Th/sec for scanning analyzers.
306 MS_scan_rate = 1000015,
307
308 /// scan start time: The time that an analyzer started a scan, relative to the start of the MS run.
310
311 /// Scan Function: Describes the type of mass analysis being performed. Two primary modes are: typical acquisition over a range of masses (Mass Scan), and Selected Ion Detection. The primary difference is that Selected Ion Detection produces a single value for the signal at the selected mass rather than producing a mass spectrum.
313
314 /// scan direction: Direction in terms of m/z of the scan for scanning analyzers (low to high, or high to low).
316
317 /// scan law: Describes the function in control of the m/z scan (for scanning instruments). Commonly the scan function is linear, but in principle any function can be used.
318 MS_scan_law = 1000019,
319
320 /// scanning method: Describes the acquisition data type produced by a tandem mass spectrometry experiment.
322
323 /// reflectron state: Status of the reflectron, turned on or off.
325
326 /// TOF Total Path Length: The length of the field free drift space in a time of flight mass spectrometer.
328
329 /// isolation width: The total width (i.e. not half for plus-or-minus) of the gate applied around a selected precursor ion.
331
332 /// final MS exponent: Final MS level achieved when performing PFF with the ion trap (e.g. MS E10).
334
335 /// magnetic field strength: A property of space that produces a force on a charged particle equal to qv x B where q is the particle charge and v its velocity.
337
338 /// B (magnetic field strength): A property of space that produces a force on a charged particle equal to qv x B where q is the particle charge and v its velocity.
340
341 /// detector type: Type of detector used in the mass spectrometer.
343
344 /// detector acquisition mode: Method by which detector signal is acquired by the data system.
346
347 /// detector resolution: The resolving power of the detector to detect the smallest difference between two ions so that the valley between them is a specified fraction of the peak height.
349
350 /// sampling frequency: The rate of signal sampling (measurement) with respect to time.
352
353 /// vendor: Name of instrument vendor.
355
356 /// instrument model: Instrument model name not including the vendor's name.
358
359 /// customization: Free text description of a single customization made to the instrument; for several modifications, use several entries.
361
362 /// deisotoping: The removal of isotope peaks to represent the fragment ion as one data point and is commonly done to reduce complexity. It is done in conjunction with the charge state deconvolution.
363 MS_deisotoping = 1000033,
364
365 /// charge deconvolution: The determination of the mass of an ion based on the mass spectral peaks that represent multiple-charge ions.
367
368 /// peak picking: Spectral peak processing conducted on the acquired data to convert profile data to centroided data.
370
371 /// scan mode: OBSOLETE.
373
374 /// polarity: Terms to describe the polarity setting of the instrument.
376
377 /// minute: Acquisition time in minutes.
379
380 /// second: Acquisition time in seconds.
382
383 /// m/z: Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an ion in unified atomic mass units by its charge number (regardless of sign). The symbol is written in italicized lower case letters with no spaces. Note 1: The term mass-to-charge-ratio is deprecated. Mass-to-charge ratio has been used for the abscissa of a mass spectrum, although the quantity measured is not the quotient of the ion's mass to its electric charge. The three-character symbol m/z is recommended for the quantity that is the independent variable in a mass spectrum Note 2: The proposed unit thomson (Th) is deprecated.
384 MS_m_z = 1000040,
385
386 /// mass-to-charge ratio (m/z): Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an ion in unified atomic mass units by its charge number (regardless of sign). The symbol is written in italicized lower case letters with no spaces. Note 1: The term mass-to-charge-ratio is deprecated. Mass-to-charge ratio has been used for the abscissa of a mass spectrum, although the quantity measured is not the quotient of the ion's mass to its electric charge. The three-character symbol m/z is recommended for the quantity that is the independent variable in a mass spectrum Note 2: The proposed unit thomson (Th) is deprecated.
388
389 /// Th (m/z): Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an ion in unified atomic mass units by its charge number (regardless of sign). The symbol is written in italicized lower case letters with no spaces. Note 1: The term mass-to-charge-ratio is deprecated. Mass-to-charge ratio has been used for the abscissa of a mass spectrum, although the quantity measured is not the quotient of the ion's mass to its electric charge. The three-character symbol m/z is recommended for the quantity that is the independent variable in a mass spectrum Note 2: The proposed unit thomson (Th) is deprecated.
391
392 /// thomson (m/z): Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an ion in unified atomic mass units by its charge number (regardless of sign). The symbol is written in italicized lower case letters with no spaces. Note 1: The term mass-to-charge-ratio is deprecated. Mass-to-charge ratio has been used for the abscissa of a mass spectrum, although the quantity measured is not the quotient of the ion's mass to its electric charge. The three-character symbol m/z is recommended for the quantity that is the independent variable in a mass spectrum Note 2: The proposed unit thomson (Th) is deprecated.
394
395 /// charge state: The charge state of the ion, single or multiple and positive or negatively charged.
397
398 /// z (charge state): The charge state of the ion, single or multiple and positive or negatively charged.
400
401 /// peak intensity: Intensity of ions as measured by the height or area of a peak in a mass spectrum.
403
404 /// intensity unit: Intensity units are commonly arbitrary. Detected in counts per second (cps) when using counting detectors, but measured in volts when using analog detectors.
406
407 /// dissociation method: Fragmentation method used for dissociation or fragmentation.
409
410 /// collision energy: Energy for an ion experiencing collision with a stationary gas particle resulting in dissociation of the ion.
412
413 /// energy unit: Energy units are represented in either eV or Joules.
415
416 /// emulsion: State if the sample is in emulsion form.
417 MS_emulsion = 1000047,
418
419 /// gaseous sample state: State if the sample is in gaseous form.
421
422 /// liquid sample state: State if the sample is in liquid form.
424
425 /// solid sample state: State if the sample is in solid form.
427
428 /// solution: State if the sample is in solution form.
429 MS_solution = 1000051,
430
431 /// suspension: State if the sample is in suspension form.
432 MS_suspension = 1000052,
433
434 /// sample batch: Sample batch lot identifier.
436
437 /// chromatography: Chromatographic conditions used to obtain the sample.
439
440 /// continuous flow fast atom bombardment: Fast atom bombardment ionization in which the analyte in solution is entrained in a flowing liquid matrix.
442
443 /// CF-FAB (continuous flow fast atom bombardment): Fast atom bombardment ionization in which the analyte in solution is entrained in a flowing liquid matrix.
445
446 /// direct inlet: The sample is directly inserted into the ion source, usually on the end of a heatable probe.
448
449 /// electrospray inlet: Inlet used for introducing the liquid sample into an electrospray ionization source.
451
452 /// flow injection analysis: Sample is directly injected or infused into the ionization source.
454
455 /// inductively coupled plasma: A gas discharge ion source in which the energy to the plasma is supplied by electromagnetic induction.
457
458 /// infusion: The continuous flow of solution of a sample into the ionization source.
459 MS_infusion = 1000060,
460
461 /// jet separator: A device that separates carrier gas from gaseous analyte molecules on the basis of diffusivity.
463
464 /// membrane separator: A device to separate carrier molecules from analyte molecules on the basis of ease of diffusion across a semipermeable membrane.
466
467 /// moving belt: Continuous moving surface in the form of a belt which passes through an ion source carrying analyte molecules.
468 MS_moving_belt = 1000063,
469
470 /// moving wire: Continuous moving surface in the form of a wire which passes through an ion source carrying analyte molecules.
471 MS_moving_wire = 1000064,
472
473 /// open split: A division of flowing stream of liquid into two streams.
474 MS_open_split = 1000065,
475
476 /// particle beam: Method for generating ions from a solution of an analyte.
478
479 /// reservoir: A sample inlet method involving a reservoir.
480 MS_reservoir = 1000067,
481
482 /// septum: A disc composed of a flexible material that seals the entrance to the reservoir. Can also be entrance to the vacuum chamber.
483 MS_septum = 1000068,
484
485 /// thermospray inlet: A method for generating gas phase ions from a solution of an analyte by rapid heating of the sample.
487
488 /// atmospheric pressure chemical ionization: Chemical ionization that takes place at atmospheric pressure as opposed to the reduced pressure is normally used for chemical ionization.
490
491 /// APCI (atmospheric pressure chemical ionization): Chemical ionization that takes place at atmospheric pressure as opposed to the reduced pressure is normally used for chemical ionization.
493
494 /// chemical ionization: The formation of a new ion by the reaction of a neutral species with an ion. The process may involve transfer of an electron, a proton or other charged species between the reactants. When a positive ion results from chemical ionization the term may be used without qualification. When a negative ion results the term negative ion chemical ionization should be used. Note that this term is not synonymous with chemi-ionization.
496
497 /// CI (chemical ionization): The formation of a new ion by the reaction of a neutral species with an ion. The process may involve transfer of an electron, a proton or other charged species between the reactants. When a positive ion results from chemical ionization the term may be used without qualification. When a negative ion results the term negative ion chemical ionization should be used. Note that this term is not synonymous with chemi-ionization.
499
500 /// Electronic Ionization: The ionization of an atom or molecule by electrons that are typically accelerated to energies between 50 and 150 eV. Usually 70 eV electrons are used to produce positive ions. The term 'electron impact' is not recommended.
502
503 /// EI (Electronic Ionization): The ionization of an atom or molecule by electrons that are typically accelerated to energies between 50 and 150 eV. Usually 70 eV electrons are used to produce positive ions. The term 'electron impact' is not recommended.
505
506 /// electrospray ionization: A process in which ionized species in the gas phase are produced from an analyte-containing solution via highly charged fine droplets, by means of spraying the solution from a narrow-bore needle tip at atmospheric pressure in the presence of a high electric field. When a pressurized gas is used to aid in the formation of a stable spray, the term pneumatically assisted electrospray ionization is used. The term ion spray is not recommended.
508
509 /// ESI (electrospray ionization): A process in which ionized species in the gas phase are produced from an analyte-containing solution via highly charged fine droplets, by means of spraying the solution from a narrow-bore needle tip at atmospheric pressure in the presence of a high electric field. When a pressurized gas is used to aid in the formation of a stable spray, the term pneumatically assisted electrospray ionization is used. The term ion spray is not recommended.
511
512 /// fast atom bombardment ionization: The ionization of any species by the interaction of a focused beam of neutral atoms having a translational energy of several thousand eV with a sample that is typically dissolved in a solvent matrix. See also secondary ionization.
514
515 /// FAB (fast atom bombardment ionization): The ionization of any species by the interaction of a focused beam of neutral atoms having a translational energy of several thousand eV with a sample that is typically dissolved in a solvent matrix. See also secondary ionization.
517
518 /// matrix-assisted laser desorption ionization: The formation of gas-phase ions from molecules that are present in a solid or solvent matrix that is irradiated with a pulsed laser. See also laser desorption/ionization.
520
521 /// MALDI (matrix-assisted laser desorption ionization): The formation of gas-phase ions from molecules that are present in a solid or solvent matrix that is irradiated with a pulsed laser. See also laser desorption/ionization.
523
524 /// negative ion mode: OBSOLETE.
526
527 /// positive ion mode: OBSOLETE.
529
530 /// axial ejection linear ion trap: A linear ion trap mass spectrometer where ions are ejected along the axis of the analyzer.
532
533 /// fourier transform ion cyclotron resonance mass spectrometer: A mass spectrometer based on the principle of ion cyclotron resonance in which an ion in a magnetic field moves in a circular orbit at a frequency characteristic of its m/z value. Ions are coherently excited to a larger radius orbit using a pulse of radio frequency energy and their image charge is detected on receiver plates as a time domain signal. Fourier transformation of the time domain signal results in a frequency domain signal which is converted to a mass spectrum based in the inverse relationship between frequency and m/z.
535
536 /// FT_ICR (fourier transform ion cyclotron resonance mass spectrometer): A mass spectrometer based on the principle of ion cyclotron resonance in which an ion in a magnetic field moves in a circular orbit at a frequency characteristic of its m/z value. Ions are coherently excited to a larger radius orbit using a pulse of radio frequency energy and their image charge is detected on receiver plates as a time domain signal. Fourier transformation of the time domain signal results in a frequency domain signal which is converted to a mass spectrum based in the inverse relationship between frequency and m/z.
538
539 /// magnetic sector: A device that produces a magnetic field perpendicular to a charged particle beam that deflects the beam to an extent that is proportional to the particle momentum per unit charge. For a monoenergetic beam, the deflection is proportional to m/z.
541
542 /// quadrupole: A mass spectrometer that consists of four parallel rods whose centers form the corners of a square and whose opposing poles are connected. The voltage applied to the rods is a superposition of a static potential and a sinusoidal radio frequency potential. The motion of an ion in the x and y dimensions is described by the Matthieu equation whose solutions show that ions in a particular m/z range can be transmitted along the z axis.
543 MS_quadrupole = 1000081,
544
545 /// quadrupole ion trap: Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional ion trap and then selectively ejects them by varying the RF and DC potentials.
547
548 /// Paul Ion trap (quadrupole ion trap): Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional ion trap and then selectively ejects them by varying the RF and DC potentials.
550
551 /// QIT (quadrupole ion trap): Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional ion trap and then selectively ejects them by varying the RF and DC potentials.
553
554 /// Quistor (quadrupole ion trap): Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional ion trap and then selectively ejects them by varying the RF and DC potentials.
556
557 /// radial ejection linear ion trap: A linear ion trap mass spectrometer where ions are ejected along the radius of the analyzer.
559
560 /// time-of-flight: Instrument that separates ions by m/z in a field-free region after acceleration to a fixed acceleration energy.
562
563 /// TOF (time-of-flight): Instrument that separates ions by m/z in a field-free region after acceleration to a fixed acceleration energy.
565
566 /// baseline: An attribute of resolution when recording the detector response in absence of the analyte.
567 MS_baseline = 1000085,
568
569 /// full width at half-maximum: A measure of resolution represented as width of the peak at half peak height.
571
572 /// FWHM (full width at half-maximum): A measure of resolution represented as width of the peak at half peak height.
574
575 /// ten percent valley: An attribute of resolution when the ratio between adjacent signals is 10% of the signal height.
577
578 /// constant: When resolution is constant with respect to m/z.
580
581 /// proportional: When resolution is proportional with respect to m/z.
583
584 /// mass scan: A variation of instrument where a selected mass is scanned.
586
587 /// selected ion detection: Please see Single Ion Monitoring.
589
590 /// decreasing m/z scan: High to low direction in terms of m/z of the scan for scanning analyzers.
592
593 /// increasing m/z scan: Low to high direction in terms of m/z of the scan for scanning analyzers.
595
596 /// exponential: The mass scan is done in exponential mode.
597 MS_exponential = 1000094,
598
599 /// linear: The mass scan is done in linear mode.
601
602 /// quadratic: The mass scan is done in quadratic mode.
603 MS_quadratic = 1000096,
604
605 /// constant neutral mass loss: A spectrum formed of all product ions that have been produced with a selected m/z decrement from any precursor ions. The spectrum shown correlates to the precursor ion spectrum. See also neutral loss spectrum.
607
608 /// multiple ion monitoring: Data acquired when monitoring the ion current of a few specific m/z values. Remap to MS:1000205 -Selected Ion Monitoring.
610
611 /// multiple reaction monitoring: This term is not recommended. See Selected Reaction Monitoring.
613
614 /// MRM (multiple reaction monitoring): This term is not recommended. See Selected Reaction Monitoring.
616
617 /// precursor ion scan: The specific scan function or process that will record a precursor ion spectrum.
619
620 /// product ion scan: The specific scan function or process that records product ion spectrum.
622
623 /// single ion monitoring: The operation of a mass spectrometer to monitor a single ion rather than scanning entire mass spectrum.
625
626 /// single reaction monitoring: This term is not recommended. See Selected Reaction Monitoring.
628
629 /// None ??: None.
631
632 /// reflectron off: Reflectron is off.
634
635 /// reflectron on: Reflectron is on.
637
638 /// channeltron: A horn-shaped (or cone-shaped) continuous dynode particle multiplier. The ion strikes the inner surface of the device and induces the production of secondary electrons that in turn impinge on the inner surfaces to produce more secondary electrons. This avalanche effect produces an increase in signal in the final measured current pulse.
639 MS_channeltron = 1000107,
640
641 /// Channeltron Detector (channeltron): A horn-shaped (or cone-shaped) continuous dynode particle multiplier. The ion strikes the inner surface of the device and induces the production of secondary electrons that in turn impinge on the inner surfaces to produce more secondary electrons. This avalanche effect produces an increase in signal in the final measured current pulse.
643
644 /// conversion dynode electron multiplier: A surface that is held at high potential so that ions striking the surface produce electrons that are subsequently detected.
646
647 /// conversion dynode photomultiplier: A detector in which ions strike a conversion dynode to produce electrons that in turn generate photons through a phosphorescent screen that are detected by a photomultiplier.
649
650 /// daly detector: Detector consisting of a conversion dynode, scintillator and photomultiplier. The metal knob at high potential emits secondary electrons when ions impinge on the surface. The secondary electrons are accelerated onto the scintillator that produces light that is then detected by the photomultiplier detector.
652
653 /// Daly (daly detector): Detector consisting of a conversion dynode, scintillator and photomultiplier. The metal knob at high potential emits secondary electrons when ions impinge on the surface. The secondary electrons are accelerated onto the scintillator that produces light that is then detected by the photomultiplier detector.
655
656 /// electron multiplier tube: A device to amplify the current of a beam or packet of charged particles or photons by incidence upon the surface of an electrode to produce secondary electrons.
658
659 /// EMT (electron multiplier tube): A device to amplify the current of a beam or packet of charged particles or photons by incidence upon the surface of an electrode to produce secondary electrons.
661
662 /// faraday cup: A conducting cup or chamber that intercepts a charged particle beam and is electrically connected to a current measuring device.
663 MS_faraday_cup = 1000112,
664
665 /// focal plane array: An array of detectors for spatially disperse ion beams in which all ions simultaneously impinge on the detector plane.
667
668 /// microchannel plate detector: A thin plate that contains a closely spaced array of channels that each act as a continuous dynode particle multiplier. A charged particle, fast neutral particle, or photon striking the plate causes a cascade of secondary electrons that ultimately exits the opposite side of the plate.
670
671 /// multichannel plate (microchannel plate detector): A thin plate that contains a closely spaced array of channels that each act as a continuous dynode particle multiplier. A charged particle, fast neutral particle, or photon striking the plate causes a cascade of secondary electrons that ultimately exits the opposite side of the plate.
673
674 /// multi-collector: A detector system commonly used in inductively coupled plasma mass spectrometers.
676
677 /// photomultiplier: A detector for conversion of the ion/electron signal into photon(s) which are then amplified and detected.
679
680 /// PMT (photomultiplier): A detector for conversion of the ion/electron signal into photon(s) which are then amplified and detected.
682
683 /// analog-digital converter: Analog-to-digital converter (abbreviated ADC, A/D or A to D) is an electronic integrated circuit (i/c) that converts continuous signals to discrete digital numbers.
685
686 /// ADC (analog-digital converter): Analog-to-digital converter (abbreviated ADC, A/D or A to D) is an electronic integrated circuit (i/c) that converts continuous signals to discrete digital numbers.
688
689 /// pulse counting: Definition to do.
691
692 /// time-digital converter: A device for converting a signal of sporadic pluses into a digital representation of their time indices.
694
695 /// TDC (time-digital converter): A device for converting a signal of sporadic pluses into a digital representation of their time indices.
697
698 /// transient recorder: A detector acquisition mode used for detecting transient signals.
700
701 /// SCIEX instrument model: The brand of instruments from the joint venture between Applied Biosystems and MDS Analytical Technologies (formerly MDS SCIEX). Previously branded as \"Applied Biosystems|MDS SCIEX\".
703
704 /// Bruker Daltonics instrument model: Bruker Daltonics' instrument model.
706
707 /// IonSpec instrument model: IonSpec corporation instrument model.
709
710 /// Shimadzu instrument model: Shimadzu corporation instrument model.
712
713 /// Thermo Finnigan instrument model: ThermoFinnigan from Thermo Electron Corporation instrument model.
715
716 /// Waters instrument model: Waters Corporation instrument model.
718
719 /// centroid spectrum: Processing of profile data to produce spectra that contains discrete peaks of zero width. Often used to reduce the size of dataset.
721
722 /// Discrete Mass Spectrum (centroid spectrum): Processing of profile data to produce spectra that contains discrete peaks of zero width. Often used to reduce the size of dataset.
724
725 /// profile spectrum: A profile mass spectrum is created when data is recorded with ion current (counts per second) on one axis and mass/charge ratio on another axis.
727
728 /// continuous mass spectrum (profile spectrum): A profile mass spectrum is created when data is recorded with ion current (counts per second) on one axis and mass/charge ratio on another axis.
730
731 /// Continuum Mass Spectrum (profile spectrum): A profile mass spectrum is created when data is recorded with ion current (counts per second) on one axis and mass/charge ratio on another axis.
733
734 /// negative scan: Polarity of the scan is negative.
736
737 /// positive scan: Polarity of the scan is positive.
739
740 /// number of detector counts: The number of counted events observed in one or a group of elements of a detector.
742
743 /// percent of base peak: The magnitude of a peak or measurement element expressed in terms of the percentage of the magnitude of the base peak intensity.
745
746 /// collision-induced dissociation: The dissociation of an ion after collisional excitation. The term collisional-activated dissociation is not recommended.
748
749 /// CID (collision-induced dissociation): The dissociation of an ion after collisional excitation. The term collisional-activated dissociation is not recommended.
751
752 /// CAD (collision-induced dissociation): The dissociation of an ion after collisional excitation. The term collisional-activated dissociation is not recommended.
754
755 /// collisionally activated dissociation (collision-induced dissociation): The dissociation of an ion after collisional excitation. The term collisional-activated dissociation is not recommended.
757
758 /// plasma desorption: The ionization of material in a solid sample by bombarding it with ionic or neutral atoms formed as a result of the fission of a suitable nuclide, typically 252Cf. Synonymous with fission fragment ionization.
760
761 /// PD (plasma desorption): The ionization of material in a solid sample by bombarding it with ionic or neutral atoms formed as a result of the fission of a suitable nuclide, typically 252Cf. Synonymous with fission fragment ionization.
763
764 /// post-source decay: A technique specific to reflectron time-of-flight mass spectrometers where product ions of metastable transitions or collision-induced dissociations generated in the drift tube prior to entering the reflectron are m/z separated to yield product ion spectra.
766
767 /// PSD (post-source decay): A technique specific to reflectron time-of-flight mass spectrometers where product ions of metastable transitions or collision-induced dissociations generated in the drift tube prior to entering the reflectron are m/z separated to yield product ion spectra.
769
770 /// surface-induced dissociation: Fragmentation that results from the collision of an ion with a surface.
772
773 /// SID (surface-induced dissociation): Fragmentation that results from the collision of an ion with a surface.
775
776 /// electron volt: A non-SI unit of energy (eV) defined as the energy acquired by a particle containing one unit of charge through a potential difference of one volt. An electron-volt is equal to 1.602 176 53(14) x 10^-19 J.
778
779 /// normalized collision energy: Instrument setting, expressed in percent, for adjusting collisional energies of ions in an effort to provide equivalent excitation of all ions.
781
782 /// 4000 QTRAP: Applied Biosystems/MDS SCIEX Q 4000 TRAP MS.
783 MS_4000_QTRAP = 1000139,
784
785 /// 4700 Proteomics Analyzer: Applied Biosystems/MDS SCIEX 4700 Proteomics Analyzer MS.
787
788 /// apex IV: Bruker Daltonics' apex IV: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR.
789 MS_apex_IV = 1000141,
790
791 /// apex Q: Bruker Daltonics' apex Q: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR.
792 MS_apex_Q = 1000142,
793
794 /// API 150EX: Applied Biosystems/MDS SCIEX API 150EX MS.
795 MS_API_150EX = 1000143,
796
797 /// API 150EX Prep: Applied Biosystems/MDS SCIEX API 150EX Prep MS.
799
800 /// API 2000: Applied Biosystems/MDS SCIEX API 2000 MS.
801 MS_API_2000 = 1000145,
802
803 /// API 3000: Applied Biosystems/MDS SCIEX API 3000 MS.
804 MS_API_3000 = 1000146,
805
806 /// API 4000: Applied Biosystems/MDS SCIEX API 4000 MS.
807 MS_API_4000 = 1000147,
808
809 /// autoflex II: Bruker Daltonics' autoflex II: MALDI TOF.
810 MS_autoflex_II = 1000148,
811
812 /// autoflex TOF/TOF: Bruker Daltonics' autoflex TOF/TOF MS: MALDI TOF.
814
815 /// Auto Spec Ultima NT: Waters magnetic sector based AutoSpec Ultima NT MS.
817
818 /// BioTOF II: Bruker Daltonics' BioTOF II: ESI TOF.
819 MS_BioTOF_II = 1000151,
820
821 /// BioTOF-Q: Bruker Daltonics' BioTOF-Q: ESI Q-TOF.
822 MS_BioTOF_Q = 1000152,
823
824 /// DELTA plusAdvantage: ThermoFinnigan DELTA plusAdvantage MS.
826
827 /// DELTAplusXP: ThermoFinnigan DELTAplusXP MS.
828 MS_DELTAplusXP = 1000154,
829
830 /// ELEMENT2: ThermoFinnigan ELEMENT2 MS.
832
833 /// esquire 4000: Bruker Daltonics' esquire 4000: linear ion trap, ESI, MALDI, Nanospray, APCI, APPI.
835
836 /// esquire 6000: Bruker Daltonics' esquire 6000: linear ion trap, ESI, MALDI, Nanospray, APCI, APPI.
838
839 /// explorer: IonSpec Explorer MS.
840 MS_explorer = 1000158,
841
842 /// GCT: Waters oa-ToF based GCT.
843 MS_GCT = 1000159,
844
845 /// HCT: Bruker Daltonics' HCT: ESI Q-TOF, Nanospray, APCI, APPI.
846 MS_HCT = 1000160,
847
848 /// HCTplus: Bruker Daltonics' HCTplus: ESI Q-TOF, Nanospray, APCI, APPI.
849 MS_HCTplus = 1000161,
850
851 /// HiRes ESI: IonSpec HiResESI MS.
852 MS_HiRes_ESI = 1000162,
853
854 /// HiRes MALDI: IonSpec HiResMALDI MS.
855 MS_HiRes_MALDI = 1000163,
856
857 /// IsoPrime: Waters IsoPrime MS.
858 MS_IsoPrime = 1000164,
859
860 /// IsoProbe: Waters IsoProbe MS.
861 MS_IsoProbe = 1000165,
862
863 /// IsoProbe T: Waters IsoProbe T MS.
864 MS_IsoProbe_T = 1000166,
865
866 /// LCQ Advantage: ThermoFinnigan LCQ Advantage MS.
868
869 /// LCQ Classic: ThermoFinnigan LCQ Classic MS.
870 MS_LCQ_Classic = 1000168,
871
872 /// LCQ Deca XP Plus: ThermoFinnigan LCQ Deca XP Plus MS.
874
875 /// M@LDI L: Waters oa-ToF based MALDI L.
876 MS_M_LDI_L = 1000170,
877
878 /// M@LDI LR: Waters oa-ToF based MALDI LR.
879 MS_M_LDI_LR = 1000171,
880
881 /// MAT253: ThermoFinnigan MAT253 MS.
882 MS_MAT253 = 1000172,
883
884 /// MAT900XP: ThermoFinnigan MAT900XP MS.
885 MS_MAT900XP = 1000173,
886
887 /// MAT900XP Trap: ThermoFinnigan MAT900XP Trap MS.
889
890 /// MAT95XP: ThermoFinnigan MAT95XP MS.
891 MS_MAT95XP = 1000175,
892
893 /// MAT95XP Trap: ThermoFinnigan MAT95XP Trap MS.
895
896 /// microflex: Bruker Daltonics' microflex: MALDI TOF.
897 MS_microflex = 1000177,
898
899 /// microTOF LC: Bruker Daltonics' microTOF LC: ESI TOF, Nanospray, APCI, APPI.
900 MS_microTOF_LC = 1000178,
901
902 /// neptune: ThermoFinnigan NEPTUNE MS.
903 MS_neptune = 1000179,
904
905 /// NG-5400: Waters NG-5400 MS.
906 MS_NG_5400 = 1000180,
907
908 /// OMEGA: IonSpec OMEGA MS.
909 MS_OMEGA = 1000181,
910
911 /// OMEGA-2001: IonSpec OMEGA-2001 MS.
912 MS_OMEGA_2001 = 1000182,
913
914 /// OmniFlex: Bruker Daltonics' OmniFlex: MALDI TOF.
915 MS_OmniFlex = 1000183,
916
917 /// Platform ICP: Waters Platform ICP MS.
919
920 /// PolarisQ: ThermoFinnigan PolarisQ MS.
921 MS_PolarisQ = 1000185,
922
923 /// proteomics solution 1: Applied Biosystems/MDS SCIEX Proteomics Solution 1 MS.
925
926 /// Q TRAP: Applied Biosystems/MDS SCIEX Q TRAP MS.
927 MS_Q_TRAP = 1000187,
928
929 /// Q-Tof micro: Waters oa-ToF based Q-Tof micro.
930 MS_Q_Tof_micro = 1000188,
931
932 /// Q-Tof Ultima: Waters oa-ToF based Q-Tof Ultima.
934
935 /// QSTAR: Applied Biosystems/MDS SCIEX QSTAR MS.
936 MS_QSTAR = 1000190,
937
938 /// quattro micro: Waters (triple) quadrupole based micro.
940
941 /// Quattro Ultima: Waters (triple) quadrupole based Ultima.
943
944 /// Surveyor MSQ: ThermoFinnigan Surveyor MSQ MS.
946
947 /// SymBiot I: Applied Biosystems/MDS SCIEX SymBiot I MS.
948 MS_SymBiot_I = 1000194,
949
950 /// SymBiot XVI: Applied Biosystems/MDS SCIEX SymBiot XVI MS.
951 MS_SymBiot_XVI = 1000195,
952
953 /// TEMPUS TOF: ThermoFinnigan TEMPUS TOF MS.
954 MS_TEMPUS_TOF = 1000196,
955
956 /// TRACE DSQ: ThermoFinnigan TRACE DSQ MS.
957 MS_TRACE_DSQ = 1000197,
958
959 /// TRITON: ThermoFinnigan TRITON MS.
960 MS_TRITON = 1000198,
961
962 /// TSQ Quantum: ThermoFinnigan TSQ Quantum MS.
963 MS_TSQ_Quantum = 1000199,
964
965 /// ultima: IonSpec Ultima MS.
966 MS_ultima = 1000200,
967
968 /// ultraflex: Bruker Daltonics' ultraflex: MALDI TOF.
969 MS_ultraflex = 1000201,
970
971 /// ultraflex TOF/TOF: Bruker Daltonics' ultraflex TOF/TOF: MALDI TOF.
973
974 /// Voyager-DE PRO: Applied Biosystems/MDS SCIEX Voyager-DE PRO MS.
976
977 /// Voyager-DE STR: Applied Biosystems/MDS SCIEX Voyager-DE STR MS.
979
980 /// selected ion monitoring: The operation of a mass spectrometer in which the intensities of several specific m/z values are recorded rather than the entire mass spectrum.
982
983 /// Multiple Ion Monitoring (selected ion monitoring): The operation of a mass spectrometer in which the intensities of several specific m/z values are recorded rather than the entire mass spectrum.
985
986 /// SIM (selected ion monitoring): The operation of a mass spectrometer in which the intensities of several specific m/z values are recorded rather than the entire mass spectrum.
988
989 /// selected reaction monitoring: Data acquired from specific product ions corresponding to m/z selected precursor ions recorded via multiple stages of mass spectrometry. Selected reaction monitoring can be performed in time or in space.
991
992 /// SRM (selected reaction monitoring): Data acquired from specific product ions corresponding to m/z selected precursor ions recorded via multiple stages of mass spectrometry. Selected reaction monitoring can be performed in time or in space.
994
995 /// accurate mass: An experimentally determined mass that is can be to determine a unique elemental formula. For ions less than 200 u, a measurement with 5 ppm accuracy is sufficient to determine the elemental composition.
997
998 /// average mass: The mass of an ion or molecule calculated using the average mass of each element weighted for its natural isotopic abundance.
1000
1001 /// appearance energy: The minimum energy that must be imparted to an atom or molecule to produce a specified ion. The term appearance potential is not recommended.
1003
1004 /// AE (appearance energy): The minimum energy that must be imparted to an atom or molecule to produce a specified ion. The term appearance potential is not recommended.
1006
1007 /// base peak: The peak in a mass spectrum that has the greatest intensity. This term may be applied to the spectra of pure substances or mixtures.
1008 MS_base_peak = 1000210,
1009
1010 /// BP (base peak): The peak in a mass spectrum that has the greatest intensity. This term may be applied to the spectra of pure substances or mixtures.
1012
1013 /// OBSOLETE charge number: The total charge on an ion divided by the electron charge e. OBSOLETED 2009-10-27 since this was viewed as a duplication of 00041 charge state.
1015
1016 /// dalton: A non-SI unit of mass (symbol Da) that is equal to the unified atomic mass unit: 1.660 538 86(28) x 10^-27 kg.
1018
1019 /// electron affinity: The electron affinity of M is the minimum energy required for the process M- ? M + e where M- and M are in their ground rotational, vibrational and electronic states and the electron has zero kinetic energy.
1021
1022 /// EA (electron affinity): The electron affinity of M is the minimum energy required for the process M- ? M + e where M- and M are in their ground rotational, vibrational and electronic states and the electron has zero kinetic energy.
1024
1025 /// electron energy obsolete: The potential difference through which electrons are accelerated before they are used to bring about electron ionization.
1027
1028 /// exact mass: The calculated mass of an ion or molecule containing a single isotope of each atom.
1030
1031 /// field-free region: A section of a mass spectrometer in which there are no electric or magnetic fields.
1033
1034 /// FFR (field-free region): A section of a mass spectrometer in which there are no electric or magnetic fields.
1036
1037 /// ionization cross section: A measure of the probability that a given ionization process will occur when an atom or molecule interacts with a photon, electron, atom or molecule.
1039
1040 /// ionization efficiency: The ratio of the number of ions formed to the number of electrons, molecules or photons used.
1042
1043 /// ionization energy: The minimum energy required to remove an electron from an atom or molecule to produce a positive ion.
1045
1046 /// IE (ionization energy): The minimum energy required to remove an electron from an atom or molecule to produce a positive ion.
1048
1049 /// isotope dilution mass spectrometry: A quantitative mass spectrometry technique in which an isotopically enriched compound is used as an internal standard.
1051
1052 /// IDMS (isotope dilution mass spectrometry): A quantitative mass spectrometry technique in which an isotopically enriched compound is used as an internal standard.
1054
1055 /// magnetic deflection: The deflection of charged particles in a magnetic field due to a force equal to qvxB where q is the particle charge, v its velocity and B the magnetic field. Magnetic deflection of an ion beam is used for m/z separation in a magnetic sector mass spectrometer.
1057
1058 /// mass defect: The difference between the monoisotopic and nominal mass of a molecule or atom.
1060
1061 /// mass number: The sum of the protons and neutrons in an atom, molecule or ion.
1063
1064 /// molecular mass: The mass of one mole of a molecular substance (6.022 1415(10) x 10^23 molecules).
1066
1067 /// monoisotopic mass: The mass of an ion or molecule calculated using the mass of the most abundant isotope of each element.
1069
1070 /// molecular beam mass spectrometry: A mass spectrometry technique in which the sample is introduced into the mass spectrometer as a molecular beam.
1072
1073 /// MBMS (molecular beam mass spectrometry): A mass spectrometry technique in which the sample is introduced into the mass spectrometer as a molecular beam.
1075
1076 /// multiphoton ionization: Photoionization of an atom or molecule in which in two or more photons are absorbed.
1078
1079 /// MPI (multiphoton ionization): Photoionization of an atom or molecule in which in two or more photons are absorbed.
1081
1082 /// nitrogen rule: An organic molecule containing the elements C, H, O, S, P, or halogen has an odd nominal mass if it contains an odd number of nitrogen atoms.
1084
1085 /// nominal mass: The mass of an ion or molecule calculated using the mass of the most abundant isotope of each element rounded to the nearest integer value.
1087
1088 /// odd-electron rule: Odd-electron ions may dissociate to form either odd or even-electron ions, whereas even-electron ions generally form even-electron fragment ions.
1090
1091 /// peak: A localized region of relatively large ion signal in a mass spectrum. Although peaks are often associated with particular ions, the terms peak and ion should not be used interchangeably.
1092 MS_peak = 1000231,
1093
1094 /// peak intensity: The height or area of a peak in a mass spectrum.
1096
1097 /// proton affinity: The proton affinity of a species M is defined as the negative of the enthalpy change for the reaction M + H+ ->[M+H]+, where all species are in their ground rotational, vibrational and electronic states.
1099
1100 /// PA (proton affinity): The proton affinity of a species M is defined as the negative of the enthalpy change for the reaction M + H+ ->[M+H]+, where all species are in their ground rotational, vibrational and electronic states.
1102
1103 /// mass resolving power: In a mass spectrum, the observed mass divided by the difference between two masses that can be separated. The method by which delta m was obtained and the mass at which the measurement was made should be reported.
1105
1106 /// total ion current chromatogram: Chromatogram obtained by plotting the total ion current detected in each of a series of mass spectra recorded as a function of retention time.
1108
1109 /// TIC chromatogram (total ion current chromatogram): Chromatogram obtained by plotting the total ion current detected in each of a series of mass spectra recorded as a function of retention time.
1111
1112 /// transmission: The ratio of the number of ions leaving a region of a mass spectrometer to the number entering that region.
1114
1115 /// unified atomic mass unit: A non-SI unit of mass (u) defined as one twelfth of ^12 C in its ground state and equal to 1.660 538 86(28) x 10^-27 kg.
1117
1118 /// u (unified atomic mass unit): A non-SI unit of mass (u) defined as one twelfth of ^12 C in its ground state and equal to 1.660 538 86(28) x 10^-27 kg.
1120
1121 /// accelerator mass spectrometry: A mass spectrometry technique in which atoms extracted from a sample are ionized, accelerated to MeV energies and separated according to their momentum, charge and energy.
1123
1124 /// AMS (accelerator mass spectrometry): A mass spectrometry technique in which atoms extracted from a sample are ionized, accelerated to MeV energies and separated according to their momentum, charge and energy.
1126
1127 /// atmospheric pressure matrix-assisted laser desorption ionization: Matrix-assisted laser desorption ionization in which the sample target is at atmospheric pressure and the ions formed by the pulsed laser are sampled through a small aperture into the mass spectrometer.
1129
1130 /// AP MALDI (atmospheric pressure matrix-assisted laser desorption ionization): Matrix-assisted laser desorption ionization in which the sample target is at atmospheric pressure and the ions formed by the pulsed laser are sampled through a small aperture into the mass spectrometer.
1132
1133 /// atmospheric pressure ionization: Any ionization process in which ions are formed in the gas phase at atmospheric pressure.
1135
1136 /// API (atmospheric pressure ionization): Any ionization process in which ions are formed in the gas phase at atmospheric pressure.
1138
1139 /// Atmostpheric Pressure Photoionization: Atmospheric pressure chemical ionization in which the reactant ions are generated by photo-ionization.
1141
1142 /// APPI (Atmostpheric Pressure Photoionization): Atmospheric pressure chemical ionization in which the reactant ions are generated by photo-ionization.
1144
1145 /// blackbody infrared radiative dissociation: A special case of infrared multiphoton dissociation wherein excitation of the reactant ion is caused by absorption of infrared photons radiating from heated blackbody surroundings, which are usually the walls of a vacuum chamber. See also infrared multiphoton dissociation.
1147
1148 /// BIRD (blackbody infrared radiative dissociation): A special case of infrared multiphoton dissociation wherein excitation of the reactant ion is caused by absorption of infrared photons radiating from heated blackbody surroundings, which are usually the walls of a vacuum chamber. See also infrared multiphoton dissociation.
1150
1151 /// charge-remote fragmentation: A fragmentation of an even-electron ion in which the cleaved bond is not adjacent to the apparent charge site.
1153
1154 /// CRF (charge-remote fragmentation): A fragmentation of an even-electron ion in which the cleaved bond is not adjacent to the apparent charge site.
1156
1157 /// consecutive reaction monitoring: MSn experiment with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored.
1159
1160 /// CRM (consecutive reaction monitoring): MSn experiment with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored.
1162
1163 /// charge stripping: The reaction of a positive ion with an atom or molecule that results in the removal of one or more electrons from the ion.
1165
1166 /// CS (charge stripping): The reaction of a positive ion with an atom or molecule that results in the removal of one or more electrons from the ion.
1168
1169 /// delayed extraction: The application of the accelerating voltage pulse after a time delay in desorption ionization from a surface. The extraction delay can produce energy focusing in a time-of-flight mass spectrometer.
1171
1172 /// DE (delayed extraction): The application of the accelerating voltage pulse after a time delay in desorption ionization from a surface. The extraction delay can produce energy focusing in a time-of-flight mass spectrometer.
1174
1175 /// desorption ionization: The formation of ions from a solid or liquid material after the rapid vaporization of that sample.
1177
1178 /// DI (desorption ionization): The formation of ions from a solid or liquid material after the rapid vaporization of that sample.
1180
1181 /// direct insertion probe: A device for introducing a solid or liquid sample into a mass spectrometer ion source for desorption ionization.
1183
1184 /// DIP (direct insertion probe): A device for introducing a solid or liquid sample into a mass spectrometer ion source for desorption ionization.
1186
1187 /// direct liquid introduction: The delivery of a liquid sample into a mass spectrometer for spray or desorption ionization.
1189
1190 /// DLI (direct liquid introduction): The delivery of a liquid sample into a mass spectrometer for spray or desorption ionization.
1192
1193 /// electron capture dissociation: A process in which a multiply protonated molecules interacts with a low energy electrons. Capture of the electron leads the liberation of energy and a reduction in charge state of the ion with the production of the (M + nH) (n-1)+ odd electron ion, which readily fragments.
1195
1196 /// ECD (electron capture dissociation): A process in which a multiply protonated molecules interacts with a low energy electrons. Capture of the electron leads the liberation of energy and a reduction in charge state of the ion with the production of the (M + nH) (n-1)+ odd electron ion, which readily fragments.
1198
1199 /// even-electron ion: An ion containing no unpaired electrons in its ground electronic state, e.g. CH3+ in its ground state.
1201
1202 /// EE (even-electron ion): An ion containing no unpaired electrons in its ground electronic state, e.g. CH3+ in its ground state.
1204
1205 /// electron-induced excitation in organics: The reaction of an ion with an electron in which the translational energy of the collision is converted into internal energy of the ion.
1207
1208 /// EIEIO (electron-induced excitation in organics): The reaction of an ion with an electron in which the translational energy of the collision is converted into internal energy of the ion.
1210
1211 /// electron multiplier: A device to amplify the current of a beam or packet of charged particles or photons by incidence upon the surface of an electrode to produce secondary electrons. The secondary electrons are then accelerated to other electrodes or parts of a continuous electrode to produce further secondary electrons.
1213
1214 /// EM (electron multiplier): A device to amplify the current of a beam or packet of charged particles or photons by incidence upon the surface of an electrode to produce secondary electrons. The secondary electrons are then accelerated to other electrodes or parts of a continuous electrode to produce further secondary electrons.
1216
1217 /// electrostatic energy analyzer: A device consisting of conducting parallel plates, concentric cylinders or concentric spheres that separates charged particles according to their kinetic energy by means of an electric field that is constant in time.
1219
1220 /// ESA (electrostatic energy analyzer): A device consisting of conducting parallel plates, concentric cylinders or concentric spheres that separates charged particles according to their kinetic energy by means of an electric field that is constant in time.
1222
1223 /// flowing afterglow: An ion source immersed in a flow of helium or other inert buffer gas that carries the ions through a meter-long reactor at pressures around 100 Pa.
1225
1226 /// FA (flowing afterglow): An ion source immersed in a flow of helium or other inert buffer gas that carries the ions through a meter-long reactor at pressures around 100 Pa.
1228
1229 /// high-field asymmetric waveform ion mobility spectrometry: The separation of ions between two concentric cylindrical electrodes due to application of a high voltage asymmetric waveform whereby ions migrate towards one of the two electrodes depending on the ratio of the high- to low-field mobility of the ion.
1231
1232 /// FAIMS (high-field asymmetric waveform ion mobility spectrometry): The separation of ions between two concentric cylindrical electrodes due to application of a high voltage asymmetric waveform whereby ions migrate towards one of the two electrodes depending on the ratio of the high- to low-field mobility of the ion.
1234
1235 /// field desorption: The formation of gas-phase ions from a material deposited on a solid surface in the presence of a high electric field. Because this process may encompass ionization by field ionization or other mechanisms, it is not recommended as a synonym for field desorption ionization.
1237
1238 /// FD (field desorption): The formation of gas-phase ions from a material deposited on a solid surface in the presence of a high electric field. Because this process may encompass ionization by field ionization or other mechanisms, it is not recommended as a synonym for field desorption ionization.
1240
1241 /// field ionization: The removal of electrons from any species by interaction with a high electric field.
1243
1244 /// FI (field ionization): The removal of electrons from any species by interaction with a high electric field.
1246
1247 /// glow discharge ionization: The formation of ions in the gas phase and from solid samples at the cathode by application of a voltage to a low pressure gas.
1249
1250 /// GD-MS (glow discharge ionization): The formation of ions in the gas phase and from solid samples at the cathode by application of a voltage to a low pressure gas.
1252
1253 /// ion kinetic energy spectrometry: A method of analysis in which a beam of ions is separated according to the ratio of its translational energy to charge.
1255
1256 /// IKES (ion kinetic energy spectrometry): A method of analysis in which a beam of ions is separated according to the ratio of its translational energy to charge.
1258
1259 /// ion mobility spectrometry: The separation of ions according to their velocity through a buffer gas under the influence of an electric field.
1261
1262 /// IMS (ion mobility spectrometry): The separation of ions according to their velocity through a buffer gas under the influence of an electric field.
1264
1265 /// infrared multiphoton dissociation: Multiphoton ionization where the reactant ion dissociates as a result of the absorption of multiple infrared photons.
1267
1268 /// IRMPD (infrared multiphoton dissociation): Multiphoton ionization where the reactant ion dissociates as a result of the absorption of multiple infrared photons.
1270
1271 /// isotope ratio mass spectrometry: The measurement of the relative quantity of the different isotopes of an element in a material with a mass spectrometer.
1273
1274 /// IRMS (isotope ratio mass spectrometry): The measurement of the relative quantity of the different isotopes of an element in a material with a mass spectrometer.
1276
1277 /// ion trap: A device for spatially confining ions using electric and magnetic fields alone or in combination.
1278 MS_ion_trap = 1000264,
1279
1280 /// IT (ion trap): A device for spatially confining ions using electric and magnetic fields alone or in combination.
1282
1283 /// kinetic energy release distribution: Distribution of values of translational kinetic energy release for an ensemble of metastable ions undergoing a specific dissociation reaction.
1285
1286 /// KERD (kinetic energy release distribution): Distribution of values of translational kinetic energy release for an ensemble of metastable ions undergoing a specific dissociation reaction.
1288
1289 /// Laser Desorption: The formation of ions through the interaction of a laser with a material or with gas-phase ions or molecules.
1291
1292 /// Laser Ionization MERGE (Laser Desorption): The formation of ions through the interaction of a laser with a material or with gas-phase ions or molecules.
1294
1295 /// LD (Laser Desorption): The formation of ions through the interaction of a laser with a material or with gas-phase ions or molecules.
1297
1298 /// mass analyzed ion kinetic energy spectrometry: Spectra that are obtained from a sector mass spectrometer that incorporates at least one magnetic sector plus one electric sector in reverse geometry. The accelerating voltage, V, and the magnetic sector field, B, are set at fixed values to select the precursor ions, which are then allowed to dissociate or to react in a field free region between the two sectors. The kinetic energy product ions of m/z selected precursor ions is analyzed by scanning the electric sector field, E. The width of the product ion spectrum peaks is related to the kinetic energy release distribution (KERD) for the dissociation process.
1300
1301 /// MIKES (mass analyzed ion kinetic energy spectrometry): Spectra that are obtained from a sector mass spectrometer that incorporates at least one magnetic sector plus one electric sector in reverse geometry. The accelerating voltage, V, and the magnetic sector field, B, are set at fixed values to select the precursor ions, which are then allowed to dissociate or to react in a field free region between the two sectors. The kinetic energy product ions of m/z selected precursor ions is analyzed by scanning the electric sector field, E. The width of the product ion spectrum peaks is related to the kinetic energy release distribution (KERD) for the dissociation process.
1303
1304 /// mass spectrometry: The branch of science that deals with all aspects of mass spectrometers and the results obtained with these instruments.
1306
1307 /// MS (mass spectrometry): The branch of science that deals with all aspects of mass spectrometers and the results obtained with these instruments.
1309
1310 /// mass spectrometry/mass spectrometry: The acquisition, study and spectra of the electrically charged products or precursors of a m/z selected ion or ions.
1312
1313 /// MS/MS (mass spectrometry/mass spectrometry): The acquisition, study and spectra of the electrically charged products or precursors of a m/z selected ion or ions.
1315
1316 /// multiple stage mass spectrometry: Multiple stages of precursor ion m/z selection followed by product ion detection for successive progeny ions.
1318
1319 /// MSn (multiple stage mass spectrometry): Multiple stages of precursor ion m/z selection followed by product ion detection for successive progeny ions.
1321
1322 /// Negative Ion chemical ionization: Chemical ionization that results in the formation of negative ions.
1324
1325 /// NICI (Negative Ion chemical ionization): Chemical ionization that results in the formation of negative ions.
1327
1328 /// neutralization reionization mass spectrometry: With this technique, m/z selected ions form neutrals by charge transfer to a collision gas or by dissociation. The neutrals are separated from the remaining ions and ionized in collisions with a second gas. This method is used to investigate reaction intermediates and other unstable species.
1330
1331 /// NRMS (neutralization reionization mass spectrometry): With this technique, m/z selected ions form neutrals by charge transfer to a collision gas or by dissociation. The neutrals are separated from the remaining ions and ionized in collisions with a second gas. This method is used to investigate reaction intermediates and other unstable species.
1333
1334 /// photoionization: The ionization of an atom or molecule by a photon, written M + h? ? M^+ + e. The term photon impact is not recommended.
1336
1337 /// PI (photoionization): The ionization of an atom or molecule by a photon, written M + h? ? M^+ + e. The term photon impact is not recommended.
1339
1340 /// pyrolysis mass spectrometry: A mass spectrometry technique in which the sample is heated to the point of decomposition and the gaseous decomposition products are introduced into the ion source.
1342
1343 /// PyMS (pyrolysis mass spectrometry): A mass spectrometry technique in which the sample is heated to the point of decomposition and the gaseous decomposition products are introduced into the ion source.
1345
1346 /// collision quadrupole: A transmission quadrupole to which an oscillating potential is applied so as to focus a beam of ions through a collision gas with no m/z separation.
1348
1349 /// q (collision quadrupole): A transmission quadrupole to which an oscillating potential is applied so as to focus a beam of ions through a collision gas with no m/z separation.
1351
1352 /// resonance enhanced multiphoton ionization: Multiphoton ionization in which the ionization cross section is significantly enhanced because the energy of the incident photons is resonant with an intermediate excited state of the neutral species.
1354
1355 /// REMPI (resonance enhanced multiphoton ionization): Multiphoton ionization in which the ionization cross section is significantly enhanced because the energy of the incident photons is resonant with an intermediate excited state of the neutral species.
1357
1358 /// residual gas analyzer: A mass spectrometer used to measure the composition and pressure of gasses in an evacuated chamber.
1360
1361 /// RGA (residual gas analyzer): A mass spectrometer used to measure the composition and pressure of gasses in an evacuated chamber.
1363
1364 /// surface enhanced laser desorption ionization: The formation of ionized species in the gas phase from analytes deposited on a particular surface substrate which is irradiated with a laser beam of which wavelength is absorbed by the surface. See also desorption/ionization on silicon and laser desorption/ionization.
1366
1367 /// SELDI (surface enhanced laser desorption ionization): The formation of ionized species in the gas phase from analytes deposited on a particular surface substrate which is irradiated with a laser beam of which wavelength is absorbed by the surface. See also desorption/ionization on silicon and laser desorption/ionization.
1369
1370 /// surface enhanced neat desorption: Matrix-assisted laser desorption ionization in which the matrix is covalently linked to the target surface.
1372
1373 /// SEND (surface enhanced neat desorption): Matrix-assisted laser desorption ionization in which the matrix is covalently linked to the target surface.
1375
1376 /// suface ionization: The ionization of a neutral species when it interacts with a solid surface with an appropriate work function and temperature.
1378
1379 /// SI (suface ionization): The ionization of a neutral species when it interacts with a solid surface with an appropriate work function and temperature.
1381
1382 /// selected ion flow tube: A device in which m/z selected ions are entrained in an inert carrier gas and undergo ion-molecule reactions.
1384
1385 /// SIFT (selected ion flow tube): A device in which m/z selected ions are entrained in an inert carrier gas and undergo ion-molecule reactions.
1387
1388 /// sustained off-resonance irradiation: A technique associated with Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry to carry out ion/neutral reactions such as low-energy collision-induced dissociation. A radio-frequency electric field of slightly off-resonance to the cyclotron frequency of the reactant ion cyclically accelerates and decelerates the reactant ion that is confined in the Penning ion trap. The ion's orbit does not exceed the dimensions of ion trap while the ion undergoes an ion/neutral species process that produces a high average translational energy for an extended time.
1390
1391 /// SORI (sustained off-resonance irradiation): A technique associated with Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry to carry out ion/neutral reactions such as low-energy collision-induced dissociation. A radio-frequency electric field of slightly off-resonance to the cyclotron frequency of the reactant ion cyclically accelerates and decelerates the reactant ion that is confined in the Penning ion trap. The ion's orbit does not exceed the dimensions of ion trap while the ion undergoes an ion/neutral species process that produces a high average translational energy for an extended time.
1393
1394 /// Spark Source Mass Spectrometry: Mass spectrometry using spark ionization.
1396
1397 /// SSMS (Spark Source Mass Spectrometry): Mass spectrometry using spark ionization.
1399
1400 /// stored waveform inverse fourier transform: A technique to create excitation waveforms for ions in FT-ICR mass spectrometer or Paul ion trap. An excitation waveform in the time-domain is generated by taking the inverse Fourier transform of an appropriate frequency-domain programmed excitation spectrum, in which the resonance frequencies of ions to be excited are included. This technique may be used for selection of precursor ions in MS2 experiments.
1402
1403 /// SWIFT (stored waveform inverse fourier transform): A technique to create excitation waveforms for ions in FT-ICR mass spectrometer or Paul ion trap. An excitation waveform in the time-domain is generated by taking the inverse Fourier transform of an appropriate frequency-domain programmed excitation spectrum, in which the resonance frequencies of ions to be excited are included. This technique may be used for selection of precursor ions in MS2 experiments.
1405
1406 /// total ion current: The sum of all the separate ion currents carried by the ions of different m/z contributing to a complete mass spectrum or in a specified m/z range of a mass spectrum.
1408
1409 /// TIC (total ion current): The sum of all the separate ion currents carried by the ions of different m/z contributing to a complete mass spectrum or in a specified m/z range of a mass spectrum.
1411
1412 /// time lag focusing: Energy focusing in a time-of-flight mass spectrometer that is accomplished by introducing a time delay between the formation of the ions and the application of the accelerating voltage pulse.
1414
1415 /// TLF (time lag focusing): Energy focusing in a time-of-flight mass spectrometer that is accomplished by introducing a time delay between the formation of the ions and the application of the accelerating voltage pulse.
1417
1418 /// time-of-flight mass spectrometer: An instrument that separates ions by m/z in a field-free region after acceleration to a fixed kinetic energy.
1420
1421 /// TOF-MS (time-of-flight mass spectrometer): An instrument that separates ions by m/z in a field-free region after acceleration to a fixed kinetic energy.
1423
1424 /// cyclotron: A device that uses an oscillating electric field and magnetic field to accelerate charged particles.
1425 MS_cyclotron = 1000288,
1426
1427 /// double-focusing mass spectrometer: A mass spectrometer that uses a magnetic sector for m/z focusing and an electric sector for energy focusing of an ion beam.
1429
1430 /// hybrid mass spectrometer: A mass spectrometer that combines m/z analyzers of different types to perform tandem mass spectrometry.
1432
1433 /// linear ion trap: A two dimensional Paul ion trap in which ions are confined in the axial dimension by means of an electric field at the ends of the trap.
1435
1436 /// mass spectrograph obsolete: An instrument that separates a beam of ions according to their mass-to-charge ratio in which the ions are directed onto a focal plane detector such as a photographic plate.
1438
1439 /// mass spectrometer: An instrument that measures the mass-to-charge ratio and relative abundances of ions.
1441
1442 /// mass spectrum: A plot of the relative abundance of a beam or other collection of ions as a function of the mass-to-charge ratio (m/z).
1444
1445 /// mattauch-herzog geometry: An arrangement for a double-focusing mass spectrometer in which a deflection of ?/(4 ?(2)) radians in a radial electric field is followed by a magnetic deflection of ?/2 radians.
1447
1448 /// nier-johnson geometry: An arrangement for a double-focusing mass spectrometer in which a deflection of ?/2 radians in a radial electric field analyzer is followed by a magnetic deflection of ?/3 radians.
1450
1451 /// paul ion trap: A device that permits the trapping of ions by means of an alternating current voltage. The ejection of ions with a m/z less than a prescribed value and retention of those with higher mass depends on the application of radio frequency voltages between a ring electrode and two end-cap electrodes to confine the ions in a circular path. The choice of these voltages determines the m/z below which ions are ejected.
1453
1454 /// prolate traochoidal mass spectrometer: A mass spectrometer in which the ions of different m/z are separated by means of crossed electric and magnetic fields in such a way that the selected ions follow a prolate trochoidal path.
1456
1457 /// quistor: An abbreviation of quadrupole ion storage trap. This term is synonymous with Paul Ion Trap. If so then add a synonym to paul and obsolete this term.
1459
1460 /// reflectron: A time-of-flight mass spectrometer that uses a static electric field to reverse the direction of travel of the ions entering it. A reflectron improves mass resolution by assuring that ions of the same m/z but different kinetic energy arrive at the detector at the same time.
1461 MS_reflectron = 1000300,
1462
1463 /// sector mass spectrometer: A mass spectrometer consisting of one or more magnetic sectors for m/z selection in a beam of ions. Such instruments may also have one or more electric sectors for energy selection.
1465
1466 /// tandem mass spectrometer: A mass spectrometer designed for mass spectrometry/mass spectrometry.
1468
1469 /// transmission quadrupole mass spectrometer: A mass spectrometer that consists of four parallel rods whose centers form the corners of a square and whose opposing poles are connected. The voltage applied to the rods is a superposition of a static potential and a sinusoidal radio frequency potential. The motion of an ion in the x and y dimensions is described by the Matthieu equation whose solutions show that ions in a particular m/z range can be transmitted along the z axis.
1471
1472 /// accelerating voltage: The electrical potential used to impart kinetic energy to ions in a mass spectrometer.
1474
1475 /// cyclotron motion: The circular motion of a charged particle moving at velocity v in a magnetic field B that results from the force qvB.
1477
1478 /// dynamic mass spectrometry: A mass spectrometer in which m/z separation using one or more electric fields that vary with time.
1480
1481 /// einzel lens: Three element charged particle lens in which the first and third elements are held at the same voltage. Such a lens produces focusing without changing the translational energy of the particle.
1483
1484 /// electric field strength: The magnitude of the force per unit charge at a given point in space.
1486
1487 /// first stability region: The region of a Mathieu stability diagram closest to the origin. Ions within this region can traverse the full length of a transmission quadrupole.
1489
1490 /// fringing field: The electric or magnetic field that extends from the edge of a sector, lens or other ion optics element.
1492
1493 /// kinetic energy analyzer: A device for measuring the kinetic energy of charged particles using a retarding field, time-of-flight, or the extent of deflection in an electric or magnetic field.
1495
1496 /// mass limit: The m/z value above which ions cannot be detected in a mass spectrometer.
1498
1499 /// scan m/z range?: The limit of m/z over which a mass spectrometer can detect ions.
1501
1502 /// mass selective axial ejection: The use of mass selective instability to eject ions of selected m/z values from an ion trap.
1504
1505 /// mass selective instability: A method for selective ejection of ions according to their m/z value in an ion trap.
1507
1508 /// mathieu stability diagram: A graphical representation expressed in terms of reduced coordinates that describes charged particle motion in a quadrupole mass filter or quadrupole ion trap mass spectrometer.
1510
1511 /// orthogonal extraction: The pulsed acceleration of ions perpendicular to their direction of travel into a time-of-flight mass spectrometer. Ions may be extracted from a directional ion source, drift tube or m/z separation stage.
1513
1514 /// resonance ion ejection: A mode of ion ejection in a quadrupole ion trap that relies on a auxiliary radio frequency voltage that is applied to the end-cap electrodes. The voltage is tuned to the secular frequency of a particular ion to eject it.
1516
1517 /// space charge effect: The mutual repulsion of particles of like charge that limits the current in a charged-particle beam and causes beams or packets of charged particles to expand radially over time.
1519
1520 /// static field: An electric or magnetic field that does not change in time.
1522
1523 /// 2E Mass Spectrum: A mass spectrum obtained by setting the electric sector field E to twice the value required to transmit the main ion-beam thereby allowing ions with a kinetic energy-to-charge ratio twice that of the main ion-beam to be transmitted. Product ions resulting from partial charge transfer reactions such as m^2+ + N ? m^+ + N^+ that occur in a collision cell (containing a gas, N) located in a field-free region preceding a magnetic and electric sector combination are detected. When the magnetic sector field B is scanned, a mass spectrum of singly charged product ions of doubly charged precursor ions is obtained.
1525
1526 /// charge inversion mass spectrum: The measurement of the relative abundance of ions that result from a charge inversion reaction as a function of m/z.
1528
1529 /// constant neutral loss scan: Spectrum of all precursor ions that undergo a selected m/z decrement.
1531
1532 /// constant neutral gain scan: Spectrum of all precursor ions that undergo a selected m/z increment.
1534
1535 /// Constant Neutral Mass Gain Scan (constant neutral gain scan): Spectrum of all precursor ions that undergo a selected m/z increment.
1537
1538 /// constant neutral gain spectrum: A spectrum formed of all product ions that have been produced by gain of a pre-selected neutral mass following the reaction with and addition of the gas in a collision cell.
1540
1541 /// constant neutral mass gain spectrum (constant neutral gain spectrum): A spectrum formed of all product ions that have been produced by gain of a pre-selected neutral mass following the reaction with and addition of the gas in a collision cell.
1543
1544 /// constant neutral loss spectrum: A spectrum formed of all product ions that have been produced with a selected m/z decrement from any precursor ions. The spectrum shown correlates to the precursor ion spectrum. See also neutral loss spectrum.
1546
1547 /// constant neutral mass loss spectrum (constant neutral loss spectrum): A spectrum formed of all product ions that have been produced with a selected m/z decrement from any precursor ions. The spectrum shown correlates to the precursor ion spectrum. See also neutral loss spectrum.
1549
1550 /// consecutive reaction monitoring: A type of MS2 experiments with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored.
1552
1553 /// e/2 mass spectrum: A mass spectrum obtained using a sector mass spectrometer in which the electric sector field E is set to half the value required to transmit the main ion-beam. This spectrum records the signal from doubly charged product ions of charge-stripping reactions.
1555
1556 /// linked scan: A scan in an instrument with two or more m/z analysers or in a sector mass spectrometer that incorporates at least one magnetic sector and one electric sector. Two or more of the analyzers are scanned simultaneously so as to preserve a predetermined relationship between scan parameters to produce a product ion, precursor ion or constant neutral loss spectrum.
1558
1559 /// linked scan at constant b/e: A linked scan at constant B/E may be performed on a sector mass spectrometer that incorporates at least one magnetic sector plus one electric sector. The magnetic field B and the electric field E are scanned simultaneously while the accelerating voltage V is held constant, so as to maintain the ratio of the two fields constant. This linked scan may record a product ion spectrum of dissociation or other reactions occurring in a field free region preceding the two sectors.
1561
1562 /// Linked Scan at Constant E2/V: A linked scan performed on a sector instrument that incorporates at least one electric sector plus one magnetic sector. The electric sector field, E, and the accelerating voltage, V, are scanned simultaneously, so as to maintain the ratio E2/V at a constant value. This linked scan recordss a product ion spectrum of dissociation or other reactions occurring in a field free region (FFR) preceding the two sectors.
1564
1565 /// Linked Scan at Constant B2/E: A linked scan performed on a sector mass spectrometer that incorporates at least one electric sector plus one magnetic sector in either order. The accelerating voltage is fixed and the magnetic field, B, and the electric field, E, are scanned simultaneously so as to maintain the ratio B2/E at a constant value. This linked scan records a precursor ion spectrum of dissociation or other reactions occurring in the field free region preceding the two sectors. The term B2/E linked scan is not recommended.
1567
1568 /// Linked Scan at Constant B[1-(E/E0)]^1/2 / E: A linked scan performed on a sector instrument that incorporates at least one electric sector plus one magnetic sector placed in either order. The accelerating voltage is fixed while scanning the magnetic field, B, and electric field, E, simultaneously, so as to maintain the quantity B[1-(E/E0)]1/2/E at a constant value. This linked scan records a constant neutral mass loss (or gain) spectrum of dissociation or other reactions occurring in a field free region preceding the two sectors. E0 is the electric field required to transmit the singly charged analog of the desired neutral fragment. The term B[1-(E/E0)]1/2/E linked scan.
1570
1571 /// MS/MS in Time: A tandem mass spectrometry method in which product ion spectra are recorded in a single m/z analyzer (such as a Paul Ion Trap or FTMS) in discreet steps over time. Ions in a specific m/z range are selected, dissociated, and the product ions analyzed sequentially in time.
1573
1574 /// MS/MS in Space: A tandem mass spectrometry method in which product ion spectra are recorded in m/z analyzers separated in space. Specific m/z separation functions are designed such that in one section of the instrument ions are selected, dissociated in an intermediate region, and the product ions are then transmitted to another analyser for m/z separation and data acquisition.
1576
1577 /// neutral loss: The loss of an uncharged species during a rearrangement process. The value slot holds the molecular formula in Hill notation of the neutral loss molecule, see PMID: 21182243. This term must be used in conjunction with a child of the term MS:1002307 (fragmentation ion type).
1579
1580 /// nth generation product ion: Serial product ions from dissociation of selected precursor ions where n refers to the number of stages of dissociation. The term granddaughter ion is deprecated.
1582
1583 /// nth generation product ion scan: The specific scan functions or processes that record the appropriate generation of product ion or ions of any m/z selected precursor ions.
1585
1586 /// nth generation product ion spectrum: The mass spectrum recorded from any mass spectrometer in which the appropriate scan function can be set to record the appropriate generation product ion or ions of m/z selected precursor ions.
1588
1589 /// precursor ion: An ion that reacts to form particular product ions. The reaction can be unimolecular dissociation, ion/molecule reaction, isomerization, or change in charge state. The term parent ion is deprecated.
1591
1592 /// precursor ion spectrum: Spectrum generated by scanning precursor m/z while monitoring a fixed product m/z.
1594
1595 /// product ion: An ion formed as the product of a reaction involving a particular precursor ion. The reaction can be unimolecular dissociation to form fragment ions, an ion/molecule reaction, or simply involve a change in the number of charges. The term fragment ion is deprecated. The term daughter ion is deprecated.
1597
1598 /// product ion spectrum: A mass spectrum recorded from any spectrometer in which the appropriate m/z separation scan function is set to record the product ion or ions of selected precursor ions.
1600
1601 /// progeny ion: A charged product of a series of consecutive reactions that includes product ions, 1st generation product ions, 2nd generation product ions, etc. Given the sequential fragmentation scheme: M1+ -> M2+ -> M3+ -> M4+ -> M5+. M4+ is the precursor ion of M5+, a 1st generation product ion of M3+, a 2nd generation product ion of M2+ and a 3rd generation product ion of M1+.
1603
1604 /// Progeny Fragment Ion (progeny ion): A charged product of a series of consecutive reactions that includes product ions, 1st generation product ions, 2nd generation product ions, etc. Given the sequential fragmentation scheme: M1+ -> M2+ -> M3+ -> M4+ -> M5+. M4+ is the precursor ion of M5+, a 1st generation product ion of M3+, a 2nd generation product ion of M2+ and a 3rd generation product ion of M1+.
1606
1607 /// array detector: Detector comprising several ion collection elements, arranged in a line or grid where each element is an individual detector.
1609
1610 /// conversion dynode: A surface that is held at high potential such that ions striking the surface produce electrons that are subsequently detected.
1612
1613 /// dynode: One of a series of electrodes in a photomultiplier tube. Such an arrangement is able to amplify the current emitted by the photocathode.
1614 MS_dynode = 1000347,
1615
1616 /// focal plane collector: A detector for spatially disperse ion beams in which all ions simultaneously impinge on the detector plane.
1618
1619 /// ion-to-photon detector: A detector in which ions strike a conversion dynode to produce electrons that in turn strike a phosphor and the resulting photons are detected by a photomultiplier.
1621
1622 /// point collector: A detector in which the ion beam is focused onto a point and the individual ions arrive sequentially.
1624
1625 /// postacceleration detector: A detector in which the charged particles are accelerated to a high velocity and impinge on a conversion dynode, emitting secondary electrons. The electrons are accelerated onto a phosphor screen, which emits photons that are in turn detected using a photomultiplier or other photon detector.
1627
1628 /// secondary electron: Electrons that are ejected from a sample surface as a result of bombardment by a primary beam of atoms, ions or photons. WAS IN DETECTOR TYPE. Where should it go.
1630
1631 /// adduct ion: Ion formed by the interaction of an ion with one or more atoms or molecules to form an ion containing all the constituent atoms of the precursor ion as well as the additional atoms from the associated atoms or molecules.
1632 MS_adduct_ion = 1000353,
1633
1634 /// aromatic ion: A planar cyclic ion that obeys the Hueckel (4n + 2) rule where n is a positive integer representing the number of conjugated Pi electrons. Charge delocalization leads to greater stability compared to a hypothetical localized structure.
1636
1637 /// analog ion: Ions that have similar chemical valence, for example the acetyl cation CH3-CO+ and the thioacetyl cation CH3-CS+.
1639
1640 /// anti-aromatic ion: A planar cyclic ion with 4n ? electrons and is therefore not aromatic.
1642
1643 /// cationized molecule: An ion formed by the association of a cation with a neutral molecule, M, for example [M+ Na]+ and [M + K]+. The terms quasi-molecular ion and pseudo-molecular ion should not be used.
1645
1646 /// cluster ion: An ion formed by a multi-component atomic or molecular assembly of one or more ions with atoms or molecules, such as [(H20)nH]+, [(NaCl)nNa]+ and [(H3PO3)nHPO3]-.
1648
1649 /// Conventional ion: A radical cation or anion in which the charge site and the unpaired electron spin are both formally located in the same atom or group of atoms, as opposed to the spatially separate electronic configuration of distonic ions. The radical cation of methanol, CH3OH+, in which the charge and spin sites are formally located at the O atom is an example of a conventional ion, whereas .CH2-OH2+ is a distonic ion.
1651
1652 /// diagnostic ion: A product ion whose formation reveals structural or compositional information of its precursor. For instance, the phenyl cation in an electron ionization mass spectrum is a diagnostic ion for benzene and derivatives.
1654
1655 /// dimeric ion: An ion formed by ionization of a dimer or by the association of an ion with its neutral counterpart such as [M2]+ or [M-H-M]+.
1657
1658 /// distonic ion: A radical cation or anion in which the charge site and the unpaired electron spin cannot be both formally located in the same atom or group of atoms as it can be with a conventional ion. For example, CH2-OH2+ is a distonic ion whereas the radical cation of methanol, CH3OH+ is a conventional ion.
1660
1661 /// enium ion: A positively charged lower-valency ion of the nonmetallic elements. The methenium ion is CH3+. Other examples are the oxenium, sulfenium, nitrenium, phosphenium, and halenium ions.
1663
1664 /// fragment ion: A product ion that results from the dissociation of a precursor ion.
1666
1667 /// ion?: An atomic or molecular species having a net positive or negative electric charge.
1669
1670 /// Isotopologue ion: An ion that differs only in the isotopic composition of one or more of its constituent atoms. For example CH4+ and CH3D+ or 10BF3 and 11BF3. The term isotopologue is a contraction of isotopic homologue.
1672
1673 /// Isotopomeric ion: Isomeric ion having the same numbers of each isotopic atom but differing in their positions. Isotopomeric ions can be either configurational isomers in which two atomic isotopes exchange positions or isotopic stereoisomers. The term isotopomer is a shortening of isotopic isomer.
1675
1676 /// metastable ion: An ion that is formed with internal energy higher than the threshold for dissociation but with a lifetime great enough to allow it to exit the ion source and enter the mass spectrometer where it dissociates before detection.
1678
1679 /// molecular ion: An ion formed by the removal of one or more electrons to form a positive ion or the addition off one or more electrons to form a negative ion.
1681
1682 /// negative ion: An atomic or molecular species having a net negative electric charge.
1684
1685 /// non-classical ion: Hyper-coordinated carbonium ion such as the penta-coordinated norbornyl cation. Note: Tri-coordinated carbenium ions are termed classical ions.
1687
1688 /// onium ion: A positively charged hypervalent ion of the nonmetallic elements. Examples are the methonium ion CH5+, the hydrogenonium ion H3+ and the hydronium ion H3O+. Other examples are the carbonium, oxonium, sulfonium, nitronium, diazonium, phosphonium, and halonium ions. Onium ions are not limited to monopositive ions; multiply-charged onium ions exist such as the gitonic (proximal) oxonium dication H4O2+ and the distonic oxonium dication H2O+-CH2-CH2-OH2+.
1690
1691 /// principal ion: Most abundant ion of an isotope cluster, such as the 11B79Br2 81Br+ ion of m/z 250 of the cluster of isotopologue molecular ions of BBr3. The term principal ion has also been used to describe ions that have been artificially isotopically enriched in one or more positions such as CH3 13CH3+ or CH2D2 +, but those are best defined as isotopologue ions.
1693
1694 /// positive ion: An atomic or molecular species having a net positive electric charge.
1696
1697 /// protonated molecule: An ion formed by interaction of a neutral molecule with a proton and represented by the symbol [M + H]+, where M is the neutral molecule. The term 'protonated molecular ion,' 'quasi-molecular ion' and 'pseudo-molecular ion' are not recommended.
1699
1700 /// radical ion: An ion, either a cation or anion, containing unpaired electrons in its ground state. The unpaired electron is denoted by a superscript dot alongside the superscript symbol for charge, such as for the molecular ion of a molecule M, that is, M+. Radical ions with more than one charge and/or more than one unpaired electron are denoted such as M(2+)(2). Unless the positions of the unpaired electron and charge can be associated with specific atoms, superscript charge designation should be placed before the superscript dot designation.
1702
1703 /// reference ion: A stable ion whose structure is known with certainty. These ions are usually formed by direct ionization of a neutral molecule of known structure and are used to verify by comparison the structure of an unknown ion.
1705
1706 /// stable ion: An ion with internal energy sufficiently low that it does not rearrange or dissociate prior to detection in a mass spectrometer.
1708
1709 /// unstable ion: An ion with sufficient energy to dissociate within the ion source.
1711
1712 /// adiabatic ionization: A process whereby an electron is removed from an atom, ion, or molecule to produce an ion in its lowest energy state.
1714
1715 /// associative ionization: An ionization process in which two excited atoms or molecules react to form a single positive ion and an electron.
1717
1718 /// atmospheric pressure photoionization: Atmospheric pressure chemical ionization in which the reactant ions are generated by photo-ionization.
1720
1721 /// autodetachment: The formation of a neutral when a negative ion in a discrete state with an energy greater than the detachment threshold loses an electron spontaneously without further interaction with an energy source.
1723
1724 /// autoionization: The formation of an ion when an atom or molecule in a discrete state with an energy greater than the ionization threshold loses an electron spontaneously without further interaction with an energy source.
1726
1727 /// charge exchange ionization: The interaction of an ion with an atom or molecule in which the charge on the ion is transferred to the neutral without the dissociation of either. Synonymous with charge transfer ionization.
1729
1730 /// chemi-ionization: The reaction of a neutral molecule with an internally excited molecule to form an ion. Note that this term is not synonymous with chemical ionization.
1732
1733 /// desorption/ionization on silicon: The formation of ions by laser desorption ionization of a sample deposited on a porous silicon surface.
1735
1736 /// dissociative ionization: The reaction of a gas-phase molecule that results in its decomposition to form products, one of which is an ion.
1738
1739 /// electron ionization: The ionization of an atom or molecule by electrons that are typically accelerated to energies between 50 and 150 eV. Usually 70 eV electrons are used to produce positive ions. The term 'electron impact' is not recommended.
1741
1742 /// ion desolvation: The removal of solvent molecules clustered around a gas-phase ion by means of heating and/or collisions with gas molecules.
1744
1745 /// ion-pair formation: The reaction of a molecule to form both a positive ion and negative ion fragment among the products.
1747
1748 /// ionization efficiency: The ratio of the number of ions formed to the number of electrons, molecules or photons used.
1750
1751 /// laser desorption ionization: The formation of gas-phase ions by the interaction of a pulsed laser with a solid or liquid material.
1753
1754 /// liquid secondary ionization: The ionization of any species by the interaction of a focused beam of ions with a sample that is dissolved in a solvent matrix. See also fast atom bombardment and secondary ionization.
1756
1757 /// membrane inlet: A semi-permeable membrane separator that permits the passage of gas sample directly to the mass spectrometer ion source.
1759
1760 /// microelectrospray: Electrospray ionization at a solvent flow rate of 300-800 nL/min where the flow is a result of a mechanical pump. See nanoelectrospray.
1762
1763 /// nanoelectrospray: Electrospray ionization at a flow rate less than ~25 nL/min. Nanoelectrospray is synonymous with nanospray. The flow is dependent on the potenial on the tip of the electrospray needle and/or a gas presure to push the sample through the needle. See also electrospray ionization and microelectrospray.
1765
1766 /// nanospray (nanoelectrospray): Electrospray ionization at a flow rate less than ~25 nL/min. Nanoelectrospray is synonymous with nanospray. The flow is dependent on the potenial on the tip of the electrospray needle and/or a gas presure to push the sample through the needle. See also electrospray ionization and microelectrospray.
1768
1769 /// penning ionization: Ionization that occurs through the interaction of two or more neutral gaseous species, at least one of which is internally excited.
1771
1772 /// plasma desorption ionization: The ionization of material in a solid sample by bombarding it with ionic or neutral atoms formed as a result of the fission of a suitable nuclide, typically 252Cf. Synonymous with fission fragment ionization.
1774
1775 /// pre-ionization state: An electronic state capable of undergoing auto-Ionization.
1777
1778 /// secondary ionization: The process in which ions are ejected from a sample surface as a result of bombardment by a primary beam of atoms or ions.
1780
1781 /// soft ionization: The formation of gas-phase ions without extensive fragmentation.
1783
1784 /// spark ionization: The formation of ions from a solid material by an intermittent electrical discharge.
1786
1787 /// surface-assisted laser desorption ionization: The formation of gas-phase ions from molecules that are deposited on a particular surface substrate that is irradiated with a pulsed laser. See also matrix-assisted laser desorption ionization.
1789
1790 /// surface ionization: The ionization of a neutral species when it interacts with a solid surface with an appropriate work function and temperature.
1792
1793 /// thermal ionization: The ionization of a neutral species through contact with a high temperature surface.
1795
1796 /// vertical ionization: A process in which an electron is removed from or added to a molecule without a change in the positions of the atoms. The resulting ion is typically in an excited vibrational state.
1798
1799 /// association reaction: The reaction of an ion with a neutral species in which the reactants combine to form a single ion.
1801
1802 /// alpha-cleavage: A homolytic cleavage where the bond fission occurs between at the atom adjacent to the atom at the apparent charge site and an atom removed from the aparent charge site by two bonds.
1804
1805 /// beta-cleavage: A homolytic cleavage where the bond fission occurs between at an atom removed from the apparent charge site atom by two bonds and an atom adjacent to that atom and removed from the aparent charge site by three bonds.
1807
1808 /// buffer gas: An inert gas used for collisional deactivation of internally excited ions.
1809 MS_buffer_gas = 1000412,
1810
1811 /// charge-induced fragmentation: Fragmentation of an odd electron ion in which the cleaved bond is adjacent to the apparent charge site. Synonymous with charge mediated fragmentation.
1813
1814 /// charge inversion reaction: Reaction of an ion with a neutral species in which the charge on the product ion is reversed in sign with respect to the reactant ion.
1816
1817 /// charge permutation reaction: The reaction of an ion with a neutral species with a resulting change in the magnitude or sign of the charge on the reactant ion.
1819
1820 /// charge stripping reaction: Reaction of a positive ion with a neutral species in which the positive charge on the product ion is greater than that on the reactant ion.
1822
1823 /// charge transfer reaction: The reaction of an ion with a neutral species in which some or all of the charge of the reactant ion is transferred to the neutral species.
1825
1826 /// collisional excitation: The reaction of an ion with a neutral species in which the translational energy of the collision is converted into internal energy of the ion.
1828
1829 /// collision gas: An inert gas used for collisional excitation. The term target gas is not recommended.
1831
1832 /// heterolytic cleavage: Fragmentation of a molecule or ion in which both electrons forming the single bond that is broken remain on one of the atoms that were originally bonded. This term is synonymous with heterolysis.
1834
1835 /// high energy collision: Collision-induced dissociation process wherein the projectile ion has laboratory-frame translational energy higher than 1 keV.
1837
1838 /// beam-type collision-induced dissociation: A collision-induced dissociation process that occurs in a beam-type collision cell.
1840
1841 /// HCD (beam-type collision-induced dissociation): A collision-induced dissociation process that occurs in a beam-type collision cell.
1843
1844 /// homolytic cleavage: Fragmentation of an odd electron ion that results from one of a pair of electrons that form a bond between two atoms moving to form a pair with the odd electron on the atom at the apparent charge site. Fragmentation results in the formation of an even electron ion and a radical. This reaction involves the movement of a single electron and is symbolized by a single-barbed arrow. Synonymous with Homolysis.
1846
1847 /// hydrogen/deuterium exchange: Exchange of hydrogen atoms with deuterium atoms in a molecule or pre-formed ion in solution prior to introduction into a mass spectrometer, or by reaction of an ion with a deuterated collision gas inside a mass spectrometer.
1849
1850 /// ion energy loss spectrum: A plot of the relative abundance of a beam or other collection of ions as a function their loss of translational energy in reactions with neutral species.
1852
1853 /// ionizing collision: The reaction of an ion with a neutral species in which one or more electrons are removed from either the ion or neutral.
1855
1856 /// ion/molecule reaction: The reaction of an ion with a neutral molecule. The term ion-molecule reaction is not recommended because the hyphen suggests a single species that is that is both an ion and a molecule.
1858
1859 /// ion/neutral complex: A particular type of transition state that lies between precursor and product ions on the reaction coordinate of some ion reactions.
1861
1862 /// ion/neutral species reaction: A process wherein a charged species interacts with a neutral reactant to produce either chemically different species or changes in the internal energy of one or both of the reactants.
1864
1865 /// ion/neutral species exchange reaction: In this reaction an association reaction is accompanied by the subsequent or simultaneous liberation of a different neutral species as a product.
1867
1868 /// kinetic method: An approach to determination of ion thermodynamic quantities by a bracketing procedure in which the relative probabilities of competing ion fragmentations are measured via the relative abundances of the reaction products. The extended kinetic method takes the associated entropy changes into account.
1870
1871 /// low energy collisions: A collision between an ion and neutral species with translational energy approximately 1000 eV or lower.
1873
1874 /// low-energy collision-induced dissociation: A collision-induced dissociation process wherein the precursor ion has the translational energy lower than approximately 1000 eV. This process typically requires multiple collisions and the collisional excitation is cumulative.
1876
1877 /// McLafferty Rearrangement: A dissociation reaction triggered by transfer of a hydrogen atom via a 6-member transition state to the formal radical/charge site from a carbon atom four atoms removed from the charge/radical site (the gamma-carbon); subsequent rearrangement of electron density leads to expulsion of an olefin molecule. This term was originally applied to ketone ions where the charge/radical site is the carbonyl oxygen, but it is now more widely applied.
1879
1880 /// photodissociation: A process wherein the reactant ion is dissociated as a result of absorption of one or more photons.
1882
1883 /// multiphoton dissociation (photodissociation): A process wherein the reactant ion is dissociated as a result of absorption of one or more photons.
1885
1886 /// MPD (photodissociation): A process wherein the reactant ion is dissociated as a result of absorption of one or more photons.
1888
1889 /// partial charge transfer reaction: Reaction of an ion with a neutral species in which some but not all of the ion charge is transferred to the neutral.
1891
1892 /// ion reaction: Chemical transformation involving an ion.
1894
1895 /// superelastic collision: Collision in which the translational energy of the fast-moving collision partner is increased at the expense of internal energy of one or both collision partners.
1897
1898 /// surface-induced reaction: A process wherein a reactant ion interacts with a surface to produce either chemically different species or a change in the internal energy of the reactant ion.
1900
1901 /// unimolecular dissociation: Fragmentation reaction in which the molecularity is treated as one, irrespective of whether the dissociative state is that of a metastable ion produced in the ion source or results from collisional excitation of a stable ion.
1903
1904 /// scan: Function or process of the mass spectrometer where it records a spectrum.
1905 MS_scan = 1000441,
1906
1907 /// spectrum: A mass spectrum is an intensity vs m/z (mass-to-charge ratio) plot representing a chemical analysis.
1908 MS_spectrum = 1000442,
1909
1910 /// mass analyzer type: Mass analyzer separates the ions according to their mass-to-charge ratio.
1912
1913 /// m/z Separation Method: Mass/charge separation Method.
1915
1916 /// sequential m/z separation method: Sequential m/z separation method.
1918
1919 /// fast ion bombardment: The ionization of any species by the interaction of a focused beam of ions having a translational energy of several thousand eV with a solid sample.
1921
1922 /// FIB (fast ion bombardment): The ionization of any species by the interaction of a focused beam of ions having a translational energy of several thousand eV with a solid sample.
1924
1925 /// LTQ: Finnigan LTQ MS.
1926 MS_LTQ = 1000447,
1927
1928 /// LTQ FT: Finnigan LTQ FT MS.
1929 MS_LTQ_FT = 1000448,
1930
1931 /// LTQ Orbitrap: Finnigan LTQ Orbitrap MS.
1933
1934 /// LXQ: Finnigan LXQ MS.
1935 MS_LXQ = 1000450,
1936
1937 /// mass analyzer: Terms used to describe the Analyzer.
1939
1940 /// analyzer (mass analyzer): Terms used to describe the Analyzer.
1942
1943 /// data transformation: Terms used to describe types of data processing.
1945
1946 /// data processing (data transformation): Terms used to describe types of data processing.
1948
1949 /// detector: The device that detects ions.
1950 MS_detector = 1000453,
1951
1952 /// instrument additional description: Additional terms to describe the instrument as outlined in the mass spec doc, Appendix 1, section 1.5.
1954
1955 /// ion selection attribute: Ion selection properties that are associated with a value.
1957
1958 /// precursor activation: Terms to describe the precursor activation.
1960
1961 /// activation (precursor activation): Terms to describe the precursor activation.
1963
1964 /// sample: Terms to describe the sample.
1965 MS_sample = 1000457,
1966
1967 /// source: Terms to describe the source.
1968 MS_source = 1000458,
1969
1970 /// spectrum instrument description: Terms used to describe the spectrum.
1972
1973 /// unit: Terms to describe units.
1975
1976 /// additional description: Terms to describe Additional.
1978
1979 /// ion optics: Device used in the construction of a mass spectrometer to focus, contain or otherwise manipulate ions.
1980 MS_ion_optics = 1000462,
1981
1982 /// instrument: Description of the instrument or the mass spectrometer.
1983 MS_instrument = 1000463,
1984
1985 /// instrument configuration (instrument): Description of the instrument or the mass spectrometer.
1987
1988 /// mass unit: A unit of measurement for mass.
1990
1991 /// scan polarity: Relative orientation of the electromagnetic field during the selection and detection of ions in the mass spectrometer.
1993
1994 /// alternating: Alternating.
1996
1997 /// 1200 series LC/MSD SL: The 1200 Series LC/MSD SL ion trap belongs to the Agilent LC/MSD ion trap family. It provides fast polarity switching and multisignal data acquisition capabilities in a single run while also providing 5 stages of automated data dependent MS2 and 11 stages of manual MS2.
1999
2000 /// 6110 Quadrupole LC/MS: The 6110 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with an entry level single quadrupole mass spectrometer from the 6100 Series of Agilent quadrupole mass spectrometers. 6110 Quadrupole mass spectrometer has m/z range of 10-1500 and 2500 u/s scan speed. It proves useful for wide range of SIM quantitative applications.
2002
2003 /// 6120A Quadrupole LC/MS: The 6120A Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent mass spectrometers. 6120 quadrupole mass spectrometer has m/z range of 10-1500, 2500 u/s scan speed and utilizes multiple signal acquisition.
2005
2006 /// 6130 Quadrupole LC/MS: The 6130 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 series of Agilent mass spectrometers. The 6130 quadrupole mass spectrometer has m/z range of 2-3000, 2500 u/s scan speed in standard mode and 5250 u/s speed in fast-scan mode. It also uses multiple signal acquisition.
2008
2009 /// 6140 Quadrupole LC/MS: The 6140 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent quadrupole mass spectrometers. 6140 Quadrupole mass spectrometer has m/z range of 10-1350, 2500 u/s scan speed in standard mode and 10000 u/s speed in fast-scan mode. It also uses multiple signal acquisition.
2011
2012 /// 6210 Time-of-Flight LC/MS: The 6210 Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 13,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources.
2014
2015 /// 6310 Ion Trap LC/MS: The 6310 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.35 resolution and mass range of 200-4000 with resolution of 3-4. The scan speed varies from 1650-27000 for the respective mass ranges.
2017
2018 /// 6320 Ion Trap LC/MS: The 6320 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.25 resolution and mass range of 200-4000 with resolution of less than 3. The scan speed varies from 1650-27000 for the respective mass ranges.
2020
2021 /// 6330 Ion Trap LC/MS: The 6330 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.25 resolution and mass range of 200-4000 with resolution of less than 3. The scan speed varies from 1650-27000 for the respective mass ranges.
2023
2024 /// 6340 Ion Trap LC/MS: The 6340 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.25 resolution and mass range of 200-4000 with resolution of less than 3. The scan speed varies from 1650-27000 for the respective mass ranges.
2026
2027 /// 6410 Triple Quadrupole LC/MS: The 6410 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer. Mass range of the mass spectrometer is 15-1650 m/z, resolution is at three settings of 0.7 u (unit), 1.2 u (wide) and 2.5 u (widest). The mass accuracy for 6410 mass spectrometer is 0.1 across the mass range. The collision cell is a hexapole with linear acceleration.
2029
2030 /// 6410 Triple Quad LC/MS (6410 Triple Quadrupole LC/MS): The 6410 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer. Mass range of the mass spectrometer is 15-1650 m/z, resolution is at three settings of 0.7 u (unit), 1.2 u (wide) and 2.5 u (widest). The mass accuracy for 6410 mass spectrometer is 0.1 across the mass range. The collision cell is a hexapole with linear acceleration.
2032
2033 /// 1200 series LC/MSD VL: The LC/MSD VL ion trap is part of the family of Agilent ion trap mass spectrometers. It has ESI, APCI and APPI ion sources and is a useful ion trap when the amount of sample is not the limiting factor.
2035
2036 /// purgatory: Terms that will likely become obsolete unless there are wails of dissent.
2038
2039 /// mass analyzer attribute: Analyzer properties that are associated with a value.
2041
2042 /// detector attribute: Detector attribute recognized as a value.
2044
2045 /// source attribute: Property of a source device that need a value.
2047
2048 /// Thermo Fisher Scientific instrument model: Thermo Fisher Scientific instrument model. The company has gone through several names including Thermo Finnigan, Thermo Scientific.
2050
2051 /// orbitrap: An ion trapping device that consists of an outer barrel-like electrode and a coaxial inner spindle-like electrode that form an electrostatic field with quadro-logarithmic potential distribution. The frequency of harmonic oscillations of the orbitally trapped ions along the axis of the electrostatic field is independent of the ion velocity and is inversely proportional to the square root of m/z so that the trap can be used as a mass analyzer.
2052 MS_orbitrap = 1000484,
2053
2054 /// nanospray inlet: Nanospray Inlet.
2056
2057 /// source potential: Potential difference at the MS source in volts.
2059
2060 /// ion optics attribute: Ion optics involves components that help focus ion streams in mass spectrometry.
2062
2063 /// Hitachi instrument model: Hitachi instrument model.
2065
2066 /// Varian instrument model: Varian instrument model.
2068
2069 /// Agilent instrument model: Agilent instrument model.
2071
2072 /// Dionex instrument model: Dionex instrument model.
2074
2075 /// Thermo Electron instrument model: Thermo Electron Corporation instrument model.
2077
2078 /// Finnigan MAT instrument model: Finnigan MAT instrument model.
2080
2081 /// Thermo Scientific instrument model: Thermo Scientific instrument model.
2083
2084 /// Applied Biosystems instrument model: Applied Biosystems instrument model.
2086
2087 /// ABI (Applied Biosystems instrument model): Applied Biosystems instrument model.
2089
2090 /// instrument attribute: Instrument properties that are associated with a value.
2092
2093 /// zoom scan: Special scan mode, where data with improved resolution is acquired. This is typically achieved by scanning a more narrow m/z window or scanning with a lower scan rate.
2094 MS_zoom_scan = 1000497,
2095
2096 /// enhanced resolution scan (zoom scan): Special scan mode, where data with improved resolution is acquired. This is typically achieved by scanning a more narrow m/z window or scanning with a lower scan rate.
2098
2099 /// full scan: Feature of the ion trap mass spectrometer where MS data is acquired over a mass range.
2101
2102 /// spectrum attribute: Spectrum properties that are associated with a value.
2104
2105 /// scan window upper limit: The lower m/z bound of a mass spectrometer scan window.
2107
2108 /// scan window lower limit: The upper m/z bound of a mass spectrometer scan window.
2110
2111 /// dwell time: The time spent gathering data across a peak.
2112 MS_dwell_time = 1000502,
2113
2114 /// scan attribute: Scan properties that are associated with a value.
2116
2117 /// base peak m/z: M/z value of the signal of highest intensity in the mass spectrum.
2119
2120 /// base peak intensity: The intensity of the greatest peak in the mass spectrum.
2122
2123 /// ion role: Ion Role.
2125
2126 /// ion attribute: Ion properties that are associated with a value.
2128
2129 /// ion chemical type: Ion Type.
2131
2132 /// activation energy: Activation Energy.
2134
2135 /// precursor activation attribute: Precursor Activation Attribute.
2137
2138 /// ms level: Stages of ms achieved in a multi stage mass spectrometry experiment.
2139 MS_ms_level = 1000511,
2140
2141 /// filter string: A string unique to Thermo instrument describing instrument settings for the scan.
2143
2144 /// binary data array: A data array of values.
2146
2147 /// m/z array: A data array of m/z values.
2148 MS_m_z_array = 1000514,
2149
2150 /// intensity array: A data array of intensity values.
2152
2153 /// charge array: A data array of charge values.
2155
2156 /// signal to noise array: A data array of signal-to-noise values.
2158
2159 /// binary data type: Encoding type of binary data specifying the binary representation and precision, e.g. 64-bit float.
2161
2162 /// 32-bit integer: Signed 32-bit little-endian integer.
2164
2165 /// 16-bit float: Signed 16-bit float.
2167
2168 /// 32-bit float: 32-bit precision little-endian floating point conforming to IEEE-754.
2170
2171 /// 64-bit integer: Signed 64-bit little-endian integer.
2173
2174 /// 64-bit float: 64-bit precision little-endian floating point conforming to IEEE-754.
2176
2177 /// data file content: Describes the data content on the file.
2179
2180 /// spectrum representation: Way in which the spectrum is represented, either with regularly spaced data points or with a list of centroided peaks.
2182
2183 /// Waters raw format: Waters data file format found in a Waters RAW directory, generated from an MS acquisition.
2185
2186 /// highest observed m/z: Highest m/z value observed in the m/z array.
2188
2189 /// lowest observed m/z: Lowest m/z value observed in the m/z array.
2191
2192 /// instrument serial number: Serial Number of the instrument.
2194
2195 /// file format conversion: Conversion of one file format to another.
2197
2198 /// software: Software related to the recording or transformation of spectra.
2199 MS_software = 1000531,
2200
2201 /// Xcalibur: Thermo Finnigan software for data acquisition and analysis.
2202 MS_Xcalibur = 1000532,
2203
2204 /// Bioworks: Thermo Finnigan software for data analysis of peptides and proteins.
2205 MS_Bioworks = 1000533,
2206
2207 /// MassLynx: Micromass software for data acquisition and analysis.
2208 MS_MassLynx = 1000534,
2209
2210 /// FlexAnalysis: Bruker software for data analysis.
2212
2213 /// Data Explorer: Applied Biosystems software for data acquisition and analysis.
2215
2216 /// 4700 Explorer: Applied Biosystems software for data acquisition and analysis.
2218
2219 /// massWolf: A software for converting Waters raw directory format to mzXML or mzML. MassWolf was originally developed at the Institute for Systems Biology.
2220 MS_massWolf = 1000538,
2221
2222 /// wolf (massWolf): A software for converting Waters raw directory format to mzXML or mzML. MassWolf was originally developed at the Institute for Systems Biology.
2224
2225 /// Voyager Biospectrometry Workstation System: Applied Biosystems MALDI-TOF data acquisition and analysis system.
2227
2228 /// FlexControl: Bruker software for data acquisition.
2230
2231 /// ReAdW: A software program for converting Thermo Finnigan RAW file format to mzXML or mzML. ReAdW was originally developed at the Institute for Systems Biology. Its whimsical interleaved spelling and capitalization is pronounced \"readraw\".
2232 MS_ReAdW = 1000541,
2233
2234 /// MzStar: A software program for converting Applied Biosystems wiff file format to mzXML format. MzStar was originally developed at the Institute for Systems Biology. It is now obsoleted by the MzWiff program.
2235 MS_MzStar = 1000542,
2236
2237 /// data processing action: Data processing attribute used to describe the type of data processing performed on the data file.
2239
2240 /// Conversion to mzML: Conversion of a file format to Proteomics Standards Initiative mzML file format.
2242
2243 /// Conversion to mzXML: Conversion of a file format to Institute of Systems Biology mzXML file format.
2245
2246 /// Conversion to mzData: Conversion of a file format to Proteomics Standards Initiative mzData file format.
2248
2249 /// object attribute: Object Attribute.
2251
2252 /// sample attribute: Sample properties that are associated with a value.
2254
2255 /// selection window attribute: Selection window properties that are associated with a value.
2257
2258 /// time unit: Time Unit.
2260
2261 /// Analyst: SCIEX or Applied Biosystems|MDS SCIEX software for data acquisition.
2262 MS_Analyst = 1000551,
2263
2264 /// maldi spot identifier: Maldi Spot Identifier.
2266
2267 /// Trapper: A software program for converting Agilent MassHunter format to mzXML or mzML. Trapper was originally developed at the Institute for Systems Biology.
2268 MS_Trapper = 1000553,
2269
2270 /// LCQ Deca: ThermoFinnigan LCQ Deca.
2271 MS_LCQ_Deca = 1000554,
2272
2273 /// LTQ Orbitrap Discovery: LTQ Orbitrap Discovery.
2275
2276 /// LTQ Orbitrap XL: LTQ Orbitrap XL.
2278
2279 /// LTQ FT Ultra: LTQ FT Ultra.
2281
2282 /// GC Quantum: GC Quantum.
2283 MS_GC_Quantum = 1000558,
2284
2285 /// spectrum type: Spectrum type.
2287
2288 /// mass spectrometer file format: The format of the file being used. This could be a instrument or vendor specific proprietary file format or a converted open file format.
2290
2291 /// data file checksum type: Checksum is a form of redundancy check, a simple way to protect the integrity of data by detecting errors in data.
2293
2294 /// ABI WIFF format: Applied Biosystems WIFF file format.
2296
2297 /// Thermo RAW format: Thermo Scientific RAW file format.
2299
2300 /// PSI mzData format: Proteomics Standards Inititative mzData file format.
2302
2303 /// Micromass PKL format: Micromass PKL file format.
2305
2306 /// ISB mzXML format: Institute of Systems Biology mzXML file format.
2308
2309 /// Bruker/Agilent YEP format: Bruker/Agilent YEP file format.
2311
2312 /// MD5: MD5 (Message-Digest algorithm 5) is a cryptographic hash function with a 128-bit hash value used to check the integrity of files.
2313 MS_MD5 = 1000568,
2314
2315 /// SHA-1: SHA-1 (Secure Hash Algorithm-1) is a cryptographic hash function designed by the National Security Agency (NSA) and published by the NIST as a U. S. government standard. It is also used to verify file integrity.
2316 MS_SHA_1 = 1000569,
2317
2318 /// spectra combination: Method used to combine the mass spectra.
2320
2321 /// sum of spectra: Spectra Sum.
2323
2324 /// binary data compression type: Compression Type.
2326
2327 /// median of spectra: Spectra is combined by calculating the median of the spectra.
2329
2330 /// zlib compression: Zlib.
2332
2333 /// mean of spectra: Spectra is combined by calculating the mean of the spectra.
2335
2336 /// no compression: No Compression.
2338
2339 /// raw data file: Describes the type of file and its content.
2341
2342 /// source file (raw data file): Describes the type of file and its content.
2344
2345 /// LCQ Fleet: LCQ Fleet.
2346 MS_LCQ_Fleet = 1000578,
2347
2348 /// MS1 spectrum: Mass spectrum created by a single-stage MS experiment or the first stage of a multi-stage experiment.
2350
2351 /// full spectrum (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stage of a multi-stage experiment.
2353
2354 /// Q1 spectrum (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stage of a multi-stage experiment.
2356
2357 /// Q3 spectrum (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stage of a multi-stage experiment.
2359
2360 /// Single-Stage Mass Spectrometry (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stage of a multi-stage experiment.
2362
2363 /// MSn spectrum: MSn refers to multi-stage MS2 experiments designed to record product ion spectra where n is the number of product ion stages (progeny ions). For ion traps, sequential MS/MS experiments can be undertaken where n > 2 whereas for a simple triple quadrupole system n=2. Use the term ms level (MS:1000511) for specifying n.
2365
2366 /// multiple-stage mass spectrometry spectrum (MSn spectrum): MSn refers to multi-stage MS2 experiments designed to record product ion spectra where n is the number of product ion stages (progeny ions). For ion traps, sequential MS/MS experiments can be undertaken where n > 2 whereas for a simple triple quadrupole system n=2. Use the term ms level (MS:1000511) for specifying n.
2368
2369 /// nth generation product ion spectrum (MSn spectrum): MSn refers to multi-stage MS2 experiments designed to record product ion spectra where n is the number of product ion stages (progeny ions). For ion traps, sequential MS/MS experiments can be undertaken where n > 2 whereas for a simple triple quadrupole system n=2. Use the term ms level (MS:1000511) for specifying n.
2371
2372 /// product ion spectrum (MSn spectrum): MSn refers to multi-stage MS2 experiments designed to record product ion spectra where n is the number of product ion stages (progeny ions). For ion traps, sequential MS/MS experiments can be undertaken where n > 2 whereas for a simple triple quadrupole system n=2. Use the term ms level (MS:1000511) for specifying n.
2374
2375 /// CRM spectrum: Spectrum generated from MSn experiment with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored.
2377
2378 /// SIM spectrum: Spectrum obtained with the operation of a mass spectrometer in which the abundances of one ion or several ions of specific m/z values are recorded rather than the entire mass spectrum (Selected Ion Monitoring).
2380
2381 /// MIM spectrum (SIM spectrum): Spectrum obtained with the operation of a mass spectrometer in which the abundances of one ion or several ions of specific m/z values are recorded rather than the entire mass spectrum (Selected Ion Monitoring).
2383
2384 /// multiple ion monitoring spectrum (SIM spectrum): Spectrum obtained with the operation of a mass spectrometer in which the abundances of one ion or several ions of specific m/z values are recorded rather than the entire mass spectrum (Selected Ion Monitoring).
2386
2387 /// selected ion monitoring spectrum (SIM spectrum): Spectrum obtained with the operation of a mass spectrometer in which the abundances of one ion or several ions of specific m/z values are recorded rather than the entire mass spectrum (Selected Ion Monitoring).
2389
2390 /// SRM spectrum: Spectrum obtained when data are acquired from specific product ions corresponding to m/z values of selected precursor ions a recorded via two or more stages of mass spectrometry. The precursor/product ion pair is called a transition pair. Data can be obtained for a single transition pair or multiple transition pairs. Multiple time segments of different transition pairs can exist in a single file. Single precursor ions can have multiple product ions consitituting multiple transition pairs. Selected reaction monitoring can be performed as tandem mass spectrometry in time or tandem mass spectrometry in space.
2392
2393 /// MRM spectrum (SRM spectrum): Spectrum obtained when data are acquired from specific product ions corresponding to m/z values of selected precursor ions a recorded via two or more stages of mass spectrometry. The precursor/product ion pair is called a transition pair. Data can be obtained for a single transition pair or multiple transition pairs. Multiple time segments of different transition pairs can exist in a single file. Single precursor ions can have multiple product ions consitituting multiple transition pairs. Selected reaction monitoring can be performed as tandem mass spectrometry in time or tandem mass spectrometry in space.
2395
2396 /// multiple reaction monitoring spectrum (SRM spectrum): Spectrum obtained when data are acquired from specific product ions corresponding to m/z values of selected precursor ions a recorded via two or more stages of mass spectrometry. The precursor/product ion pair is called a transition pair. Data can be obtained for a single transition pair or multiple transition pairs. Multiple time segments of different transition pairs can exist in a single file. Single precursor ions can have multiple product ions consitituting multiple transition pairs. Selected reaction monitoring can be performed as tandem mass spectrometry in time or tandem mass spectrometry in space.
2398
2399 /// selected reaction monitoring spectrum (SRM spectrum): Spectrum obtained when data are acquired from specific product ions corresponding to m/z values of selected precursor ions a recorded via two or more stages of mass spectrometry. The precursor/product ion pair is called a transition pair. Data can be obtained for a single transition pair or multiple transition pairs. Multiple time segments of different transition pairs can exist in a single file. Single precursor ions can have multiple product ions consitituting multiple transition pairs. Selected reaction monitoring can be performed as tandem mass spectrometry in time or tandem mass spectrometry in space.
2401
2402 /// mzML format: Proteomics Standards Inititative mzML file format.
2404
2405 /// contact attribute: Details about a person or organization to contact in case of concern or discussion about the file.
2407
2408 /// contact name: Name of the contact person or organization.
2410
2411 /// contact address: Postal address of the contact person or organization.
2413
2414 /// contact URL: Uniform Resource Locator related to the contact person or organization.
2416
2417 /// contact email: Email address of the contact person or organization.
2419
2420 /// contact affiliation: Home institution of the contact person.
2422
2423 /// MzWiff: A software program for converting Applied Biosystems wiff file format to the mzXML or mzML format. MzWiff is currently maintained at the Institute for Systems Biology. It replaces the slower mzStar program.
2424 MS_MzWiff = 1000591,
2425
2426 /// smoothing: A process of reducing spikes of intensity in order to reduce noise while preserving real peak signal. Many algorithms can be applied for this process.
2427 MS_smoothing = 1000592,
2428
2429 /// baseline reduction: A process of removal of varying intensities generated due to variable energy absorption before further processing can take place. Baseline reduction facilitates meaningful comparision between intensities of m/z values.
2431
2432 /// low intensity data point removal: The removal of very low intensity data points that are likely to be spurious noise rather than real signal.
2434
2435 /// thresholding (low intensity data point removal): The removal of very low intensity data points that are likely to be spurious noise rather than real signal.
2437
2438 /// time array: A data array of relative time offset values from a reference time.
2439 MS_time_array = 1000595,
2440
2441 /// measurement method: An attribute of resolution when recording the detector response in absence of the analyte.
2443
2444 /// ion optics type: The electrical potential used to impart kinetic energy to ions in a mass spectrometer.
2446
2447 /// electron transfer dissociation: A process to fragment ions in a mass spectrometer by inducing fragmentation of cations (e.g. peptides or proteins) by transferring electrons to them.
2449
2450 /// ETD (electron transfer dissociation): A process to fragment ions in a mass spectrometer by inducing fragmentation of cations (e.g. peptides or proteins) by transferring electrons to them.
2452
2453 /// pulsed q dissociation: A process that involves precursor ion activation at high Q, a time delay to allow the precursor to fragment, then a rapid pulse to low Q where all fragment ions are trapped. The product ions can then be scanned out of the ion trap and detected.
2455
2456 /// PQD (pulsed q dissociation): A process that involves precursor ion activation at high Q, a time delay to allow the precursor to fragment, then a rapid pulse to low Q where all fragment ions are trapped. The product ions can then be scanned out of the ion trap and detected.
2458
2459 /// Proteios: Database application and analysis platform for proteomics.
2460 MS_Proteios = 1000600,
2461
2462 /// ProteinLynx Global Server: Waters software for data analysis.
2464
2465 /// Shimadzu MALDI-TOF instrument model: Shimadzu MALDI-TOF instrument model.
2467
2468 /// Shimadzu Scientific Instruments instrument model: Shimadzu Scientific Instruments instrument model.
2470
2471 /// LCMS-IT-TOF: Shimadzu Scientific Instruments LCMS-IT-TOF MS.
2473
2474 /// LCMS-2010EV: Shimadzu Scientific Instruments LCMS-2010EV MS.
2476
2477 /// LCMS-2010A: Shimadzu Scientific Instruments LCMS-2010A MS.
2478 MS_LCMS_2010A = 1000606,
2479
2480 /// AXIMA CFR MALDI-TOF: Shimadzu Biotech AXIMA CFR MALDI-TOF MS.
2482
2483 /// AXIMA-QIT: Shimadzu Biotech AXIMA-QIT MS.
2484 MS_AXIMA_QIT = 1000608,
2485
2486 /// AXIMA-CFR plus: Shimadzu Biotech AXIMA-CFR plus MS.
2488
2489 /// AXIMA Performance MALDI-TOF/TOF: Shimadzu Biotech AXIMA Performance MALDI-TOF/TOF MS.
2491
2492 /// AXIMA Confidence MALDI-TOF: Shimadzu Biotech AXIMA Confidence MALDI-TOF (curved field reflectron) MS.
2494
2495 /// AXIMA Assurance Linear MALDI-TOF: Shimadzu Biotech AXIMA Assurance Linear MALDI-TOF MS.
2497
2498 /// DTA format: SEQUEST DTA file format.
2499 MS_DTA_format = 1000613,
2500
2501 /// ProteinLynx Global Server mass spectrum XML format: Peak list file format used by ProteinLynx Global Server.
2503
2504 /// ProteoWizard software: ProteoWizard software for data processing and analysis. Primarily developed by the labs of P. Malick and D. Tabb.
2506
2507 /// pwiz (ProteoWizard software): ProteoWizard software for data processing and analysis. Primarily developed by the labs of P. Malick and D. Tabb.
2509
2510 /// preset scan configuration: A user-defined scan configuration that specifies the instrumental settings in which a spectrum is acquired. An instrument may cycle through a list of preset scan configurations to acquire data. This is a more generic term for the Thermo \"scan event\", which is defined in the Thermo Xcalibur glossary as: a mass spectrometer scan that is defined by choosing the necessary scan parameter settings. Multiple scan events can be defined for each segment of time.
2512
2513 /// wavelength array: A data array of electromagnetic radiation wavelength values.
2515
2516 /// highest observed wavelength: Highest wavelength observed in an EMR spectrum.
2518
2519 /// lowest observed wavelength: Lowest wavelength observed in an EMR spectrum.
2521
2522 /// PDA spectrum: Spectrum generated from a photodiode array detector (ultraviolet/visible spectrum).
2524
2525 /// photodiode array detector: An array detector used to record spectra in the ultraviolet and visible region of light.
2527
2528 /// PDA (photodiode array detector): An array detector used to record spectra in the ultraviolet and visible region of light.
2530
2531 /// Surveyor PDA: Surveyor PDA.
2533
2534 /// Accela PDA: Accela PDA.
2535 MS_Accela_PDA = 1000623,
2536
2537 /// inductive detector: Inductive detector.
2539
2540 /// image current detector (inductive detector): Inductive detector.
2542
2543 /// chromatogram: The representation of detector response versus time.
2545
2546 /// chromatogram type: Broad category or type of a chromatogram.
2548
2549 /// selected ion current chromatogram: Chromatogram created by creating an array of the measurements of a specific single ion current at each time point.
2551
2552 /// SIC chromatogram (selected ion current chromatogram): Chromatogram created by creating an array of the measurements of a specific single ion current at each time point.
2554
2555 /// basepeak chromatogram: Chromatogram created by creating an array of the most intense peaks at each time point.
2557
2558 /// low intensity threshold: Threshold below which some action is taken.
2560
2561 /// data processing parameter: Data processing parameter used in the data processing performed on the data file.
2563
2564 /// high intensity threshold: Threshold above which some action is taken.
2566
2567 /// Q-Tof Premier: Waters oa-ToF based Q-Tof Premier.
2569
2570 /// possible charge state: A possible charge state of the ion in a situation where the charge of an ion is known to be one of several possible values rather than a completely unknown value or determined to be a specific charge with reasonable certainty.
2572
2573 /// DSQ: ThermoFinnigan DSQ GC-MS.
2574 MS_DSQ = 1000634,
2575
2576 /// ITQ 700: Thermo Scientific ITQ 700 GC-MS.
2577 MS_ITQ_700 = 1000635,
2578
2579 /// ITQ 900: Thermo Scientific ITQ 900 GC-MS.
2580 MS_ITQ_900 = 1000636,
2581
2582 /// ITQ 1100: Thermo Scientific ITQ 1100 GC-MS.
2583 MS_ITQ_1100 = 1000637,
2584
2585 /// LTQ XL ETD: Thermo Scientific LTQ XL MS with ETD.
2586 MS_LTQ_XL_ETD = 1000638,
2587
2588 /// LTQ Orbitrap XL ETD: Thermo Scientific LTQ Orbitrap XL MS with ETD.
2590
2591 /// DFS: Thermo Scientific DFS HR GC-MS.
2592 MS_DFS = 1000640,
2593
2594 /// DSQ II: Thermo Scientific DSQ II GC-MS.
2595 MS_DSQ_II = 1000641,
2596
2597 /// MALDI LTQ XL: Thermo Scientific MALDI LTQ XL MS.
2599
2600 /// MALDI LTQ Orbitrap: Thermo Scientific MALDI LTQ Orbitrap MS.
2602
2603 /// TSQ Quantum Access: Thermo Scientific TSQ Quantum Access MS.
2605
2606 /// Element XR: Thermo Scientific Element XR HR-ICP-MS.
2607 MS_Element_XR = 1000645,
2608
2609 /// Element 2: Thermo Scientific Element 2 HR-ICP-MS.
2610 MS_Element_2 = 1000646,
2611
2612 /// Element GD: Thermo Scientific Element GD Glow Discharge MS.
2613 MS_Element_GD = 1000647,
2614
2615 /// GC IsoLink: Thermo Scientific GC IsoLink Isotope Ratio MS.
2616 MS_GC_IsoLink = 1000648,
2617
2618 /// Exactive: Thermo Scientific Exactive MS.
2619 MS_Exactive = 1000649,
2620
2621 /// Proteome Discoverer: Thermo Scientific software for data analysis of peptides and proteins.
2623
2624 /// 3200 QTRAP: SCIEX or Applied Biosystems|MDS SCIEX QTRAP 3200.
2625 MS_3200_QTRAP = 1000651,
2626
2627 /// 4800 Plus MALDI TOF/TOF: SCIEX or Applied Biosystems|MDS SCIEX 4800 Plus MALDI TOF-TOF Analyzer.
2629
2630 /// API 3200: SCIEX or Applied Biosystems|MDS SCIEX API 3200 MS.
2631 MS_API_3200 = 1000653,
2632
2633 /// API 5000: SCIEX or Applied Biosystems|MDS SCIEX API 5000 MS.
2634 MS_API_5000 = 1000654,
2635
2636 /// QSTAR Elite: SCIEX or Applied Biosystems|MDS SCIEX QSTAR Elite.
2638
2639 /// QSTAR Pulsar: Applied Biosystems|MDS SCIEX QSTAR Pulsar.
2641
2642 /// QSTAR XL: Applied Biosystems|MDS SCIEX QSTAR XL.
2643 MS_QSTAR_XL = 1000657,
2644
2645 /// 4800 Proteomics Analyzer: Applied Biosystems|MDS SCIEX 4800 Proteomics Analyzer.
2647
2648 /// 4000 Series Explorer Software: SCIEX or Applied Biosystems software for data acquisition and analysis.
2650
2651 /// GPS Explorer: SCIEX or Applied Biosystems software for data acquisition and analysis.
2653
2654 /// LightSight Software: SCIEX or Applied Biosystems|MDS SCIEX software metabolite identification.
2656
2657 /// ProteinPilot Software: SCIEX or Applied Biosystems|MDS SCIEX software for protein ID and quant.
2659
2660 /// TissueView Software: Applied Biosystems|MDS SCIEX software for tissue imaging.
2662
2663 /// MarkerView Software: Applied Biosystems|MDS SCIEX software for metabolomics and biomarker profiling.
2665
2666 /// MRMPilot Software: Applied Biosystems|MDS SCIEX software for MRM assay development.
2668
2669 /// BioAnalyst: Applied Biosystems|MDS SCIEX software for bio-related data exploration.
2670 MS_BioAnalyst = 1000667,
2671
2672 /// Pro ID: Applied Biosystems|MDS SCIEX software for protein identification.
2673 MS_Pro_ID = 1000668,
2674
2675 /// Pro ICAT: Applied Biosystems|MDS SCIEX software for protein ID and quant by ICAT.
2676 MS_Pro_ICAT = 1000669,
2677
2678 /// Pro Quant: Applied Biosystems|MDS SCIEX software for protein ID and quant by iTRAQ.
2679 MS_Pro_Quant = 1000670,
2680
2681 /// Pro BLAST: Applied Biosystems|MDS SCIEX software for MS-BLAST identification.
2682 MS_Pro_BLAST = 1000671,
2683
2684 /// Cliquid: SCIEX Cliquid software for data analysis and quantitation.
2685 MS_Cliquid = 1000672,
2686
2687 /// MIDAS Workflow Designer: Applied Biosystems|MDS SCIEX software for MRM assay development.
2689
2690 /// MultiQuant: Applied Biosystems|MDS SCIEX software for MRM-based quantitation.
2691 MS_MultiQuant = 1000674,
2692
2693 /// 6220 Time-of-Flight LC/MS: The 6220 Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 13,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources.
2695
2696 /// 6510 Quadrupole Time-of-Flight LC/MS: The 6510 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 13,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources.
2698
2699 /// 6520A Quadrupole Time-of-Flight LC/MS: The 6520A Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 26,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources.
2701
2702 /// MassHunter Data Acquisition: Software for data acquisition of 6000 series instruments.
2704
2705 /// MassHunter Easy Access: Software for open access data acquisition.
2707
2708 /// MassHunter Qualitative Analysis: Software for data analysis of data from 6000 series instruments.
2710
2711 /// MassHunter Quantitative Analysis: Software for quantitation of Triple Quadrupole and Quadrupole Time-of-Flight data.
2713
2714 /// MassHunter Metabolite ID: Software for identification of metabolites.
2716
2717 /// MassHunter BioConfirm: Software for protein characterization.
2719
2720 /// Genespring MS: Software for quantitation and statistical analysis of TOF and Q-TOF LC/MS data.
2722
2723 /// MassHunter Mass Profiler: Software for quantitation and statistical analysis of TOF and Q-TOF LC/MS data.
2725
2726 /// METLIN: Personal Metabolite Database for MassHunter Workstation. Software for identification of human metabolites.
2727 MS_METLIN = 1000686,
2728
2729 /// Spectrum Mill for MassHunter Workstation: Software for protein identification and characterization of complex protein digest mixtures.
2731
2732 /// 6300 Series Ion Trap Data Analysis Software: Software for data analysis of 6300 series ion trap mass spectrometers.
2734
2735 /// Agilent software: Agilent software for data acquisition and analysis.
2737
2738 /// SCIEX software: SCIEX or Applied Biosystems software for data acquisition and analysis.
2740
2741 /// Applied Biosystems software: Applied Biosystems|MDS SCIEX software for data acquisition and analysis.
2743
2744 /// Bruker software: Bruker software for data acquisition and analysis.
2746
2747 /// Thermo Finnigan software: Thermo Finnigan software for data acquisition and analysis.
2749
2750 /// Waters software: Waters software for data acquisition and analysis.
2752
2753 /// apex ultra: Bruker Daltonics' apex ultra: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR.
2754 MS_apex_ultra = 1000695,
2755
2756 /// autoflex III smartbeam: Bruker Daltonics' autoflex III smartbeam: MALDI TOF.
2758
2759 /// Bruker Daltonics HCT Series: Bruker Daltonics' HCT Series.
2761
2762 /// HCTultra: Bruker Daltonics' HCTultra: ESI TOF, Nanospray, APCI, APPI.
2763 MS_HCTultra = 1000698,
2764
2765 /// HCTultra PTM: Bruker Daltonics' HCTultra PTM: ESI TOF, Nanospray, APCI, APPI, PTR.
2767
2768 /// HCTultra ETD II: Bruker Daltonics' HCTultra ETD II: ESI Q-TOF, Nanospray, APCI, APPI, ETD.
2770
2771 /// microflex LT: Bruker Daltonics' microflex LT: MALDI TOF.
2773
2774 /// micrOTOF: Bruker Daltonics' micrOTOF: ESI TOF, APCI, APPI.
2775 MS_micrOTOF = 1000702,
2776
2777 /// micrOTOF-Q: Bruker Daltonics' micrOTOF-Q: ESI Q-TOF, Nanospray, APCI, APPI.
2778 MS_micrOTOF_Q = 1000703,
2779
2780 /// micrOTOF-Q II: Bruker Daltonics' micrOTOF-Q II: ESI Q-TOF, Nanospray, APCI, APPI.
2782
2783 /// ultraflex III TOF/TOF: Bruker Daltonics' ultraflex III TOF/TOF: MALDI TOF.
2785
2786 /// apexControl: Bruker software for data acquisition.
2788
2789 /// BioTools: Bruker software for data analysis.
2790 MS_BioTools = 1000707,
2791
2792 /// CLINPROT: Bruker CLINPROT software.
2793 MS_CLINPROT = 1000708,
2794
2795 /// CLINPROT micro: Bruker CLINPROT micro software.
2797
2798 /// CLINPROT robot: Bruker CLINPROT robot software.
2800
2801 /// ClinProTools: Bruker ClinProTools software.
2803
2804 /// Compass: Bruker Compass software.
2805 MS_Compass = 1000712,
2806
2807 /// Compass for HCT/esquire: Bruker Compass for HCT/esquire software.
2809
2810 /// Compass for micrOTOF: Bruker Compass for micrOTOF software.
2812
2813 /// Compass OpenAccess: Bruker compass OpenAccess software.
2815
2816 /// Compass Security Pack: Bruker compass Security Pack software.
2818
2819 /// CompassXport: Bruker stand-alone software for data conversion.
2821
2822 /// CompassXtract: Bruker software library for data access.
2824
2825 /// DataAnalysis: Bruker software for data analysis.
2827
2828 /// dpControl: Bruker software for data acquisition.
2829 MS_dpControl = 1000720,
2830
2831 /// esquireControl: Bruker software for data acquisition.
2833
2834 /// flexImaging: Bruker software for data analysis.
2836
2837 /// GENOLINK: Bruker GENOLINK software.
2838 MS_GENOLINK = 1000723,
2839
2840 /// GenoTools: Bruker GenoTools software.
2841 MS_GenoTools = 1000724,
2842
2843 /// HCTcontrol: Bruker software for data acquisition.
2844 MS_HCTcontrol = 1000725,
2845
2846 /// micrOTOFcontrol: Bruker software for data acquisition.
2848
2849 /// PolyTools: Bruker PolyTools software.
2850 MS_PolyTools = 1000727,
2851
2852 /// ProfileAnalysis: Bruker software for data analysis.
2854
2855 /// PROTEINEER: Bruker PROTEINEER software.
2856 MS_PROTEINEER = 1000729,
2857
2858 /// PROTEINEER dp: Bruker PROTEINEER dp software.
2860
2861 /// PROTEINEER fc: Bruker PROTEINEER fc software.
2863
2864 /// PROTEINEER spII: Bruker PROTEINEER spII software.
2866
2867 /// PROTEINEER-LC: Bruker PROTEINEER-LC software.
2869
2870 /// ProteinScape: Bruker ProteinScape software.
2872
2873 /// PureDisk: BrukerPureDisk software.
2874 MS_PureDisk = 1000735,
2875
2876 /// QuantAnalysis: Bruker software for data analysis.
2878
2879 /// spControl: Bruker software for data acquisition.
2880 MS_spControl = 1000737,
2881
2882 /// TargetAnalysis: Bruker TargetAnalysis software.
2884
2885 /// WARP-LC: Bruker WARP-LC software.
2886 MS_WARP_LC = 1000739,
2887
2888 /// parameter file: Parameter file used to configure the acquisition of raw data on the instrument.
2890
2891 /// Conversion to dta: Conversion to dta format.
2893
2894 /// Bioworks SRF format: Thermo Finnigan SRF file format.
2896
2897 /// TSQ Quantum Ultra AM: Thermo Scientific TSQ Quantum Ultra AM.
2899
2900 /// selected ion m/z: Mass-to-charge ratio of an selected ion.
2902
2903 /// retention time alignment: The correction of the spectrum scan times, as used e.g. in label-free proteomics.
2905
2906 /// high intensity data point removal: The removal of very high intensity data points.
2908
2909 /// completion time: The time that a data processing action was finished.
2911
2912 /// SSQ 7000: ThermoFinnigan SSQ 7000 MS.
2913 MS_SSQ_7000 = 1000748,
2914
2915 /// TSQ 7000: ThermoFinnigan TSQ 7000 MS.
2916 MS_TSQ_7000 = 1000749,
2917
2918 /// TSQ: ThermoFinnigan TSQ MS.
2919 MS_TSQ = 1000750,
2920
2921 /// TSQ Quantum Ultra: Thermo Scientific TSQ Quantum Ultra.
2923
2924 /// TOPP software: TOPP (The OpenMS proteomics pipeline) software.
2926
2927 /// BaselineFilter: Removes the baseline from profile spectra using a top-hat filter.
2929
2930 /// DBExporter: Exports data from an OpenMS database to a file.
2931 MS_DBExporter = 1000754,
2932
2933 /// DBImporter: Imports data to an OpenMS database.
2934 MS_DBImporter = 1000755,
2935
2936 /// FileConverter: Converts between different MS file formats.
2938
2939 /// FileFilter: Extracts or manipulates portions of data from peak, feature or consensus feature files.
2940 MS_FileFilter = 1000757,
2941
2942 /// FileMerger: Merges several MS files into one file.
2943 MS_FileMerger = 1000758,
2944
2945 /// InternalCalibration: Applies an internal calibration.
2947
2948 /// MapAligner: Corrects retention time distortions between maps.
2950
2951 /// MapNormalizer: Normalizes peak intensities in an MS run.
2953
2954 /// NoiseFilter: Removes noise from profile spectra by using different smoothing techniques.
2956
2957 /// PeakPicker: Finds mass spectrometric peaks in profile mass spectra.
2959
2960 /// Resampler: Transforms an LC/MS map into a resampled map or a png image.
2961 MS_Resampler = 1000764,
2962
2963 /// SpectraFilter: Applies a filter to peak spectra.
2965
2966 /// TOFCalibration: Applies time of flight calibration.
2968
2969 /// native spectrum identifier format: Describes how the native spectrum identifiers are formated.
2971
2972 /// nativeID format (native spectrum identifier format): Describes how the native spectrum identifiers are formated.
2974
2975 /// Thermo nativeID format: Native format defined by controllerType=xsd:nonNegativeInteger controllerNumber=xsd:positiveInteger scan=xsd:positiveInteger.
2977
2978 /// Waters nativeID format: Native format defined by function=xsd:positiveInteger process=xsd:nonNegativeInteger scan=xsd:nonNegativeInteger.
2980
2981 /// WIFF nativeID format: Native format defined by sample=xsd:nonNegativeInteger period=xsd:nonNegativeInteger cycle=xsd:nonNegativeInteger experiment=xsd:nonNegativeInteger.
2983
2984 /// Bruker/Agilent YEP nativeID format: Native format defined by scan=xsd:nonNegativeInteger.
2986
2987 /// Bruker BAF nativeID format: Native format defined by scan=xsd:nonNegativeInteger.
2989
2990 /// Bruker FID nativeID format: Native format defined by file=xsd:IDREF.
2992
2993 /// multiple peak list nativeID format: Native format defined by index=xsd:nonNegativeInteger.
2995
2996 /// single peak list nativeID format: Native format defined by file=xsd:IDREF.
2998
2999 /// scan number only nativeID format: Native format defined by scan=xsd:nonNegativeInteger.
3001
3002 /// spectrum identifier nativeID format: Native format defined by spectrum=xsd:nonNegativeInteger.
3004
3005 /// charge state calculation: A process that infers the charge state of an MSn spectrum's precursor(s) by the application of some algorithm.
3007
3008 /// below precursor intensity dominance charge state calculation: Infers charge state as single or ambiguously multiple by determining the fraction of intensity below the precursor m/z.
3010
3011 /// precursor recalculation: A process that recalculates existing precursor selected ions with one or more algorithmically determined precursor selected ions.
3013
3014 /// msPrefix precursor recalculation: Recalculates one or more precursor selected ions by peak detection in the isolation windows of high accuracy MS precursor scans.
3016
3017 /// Savitzky-Golay smoothing: Reduces intensity spikes by applying local polynomial regression (of degree k) on a distribution (of at least k+1 equally spaced points) to determine the smoothed value for each point. It tends to preserve features of the distribution such as relative maxima, minima and width, which are usually 'flattened' by other adjacent averaging techniques.
3019
3020 /// LOWESS smoothing: Reduces intensity spikes by applying a modelling method known as locally weighted polynomial regression. At each point in the data set a low-degree polynomial is fit to a subset of the data, with explanatory variable values near the point whose response is being estimated. The polynomial is fit using weighted least squares, giving more weight to points near the point whose response is being estimated and less weight to points further away. The value of the regression function for the point is then obtained by evaluating the local polynomial using the explanatory variable values for that data point. The LOESS fit is complete after regression function values have been computed for each of the n data points. Many of the details of this method, such as the degree of the polynomial model and the weights, are flexible.
3022
3023 /// Gaussian smoothing: Reduces intensity spikes by convolving the data with a one-dimensional Gaussian function.
3025
3026 /// binomial smoothing (Gaussian smoothing): Reduces intensity spikes by convolving the data with a one-dimensional Gaussian function.
3028
3029 /// Weierstrass transform (Gaussian smoothing): Reduces intensity spikes by convolving the data with a one-dimensional Gaussian function.
3031
3032 /// moving average smoothing: Reduces intensity spikes by averaging each point with two or more adjacent points. The more adjacent points that used, the stronger the smoothing effect.
3034
3035 /// box smoothing (moving average smoothing): Reduces intensity spikes by averaging each point with two or more adjacent points. The more adjacent points that used, the stronger the smoothing effect.
3037
3038 /// boxcar smoothing (moving average smoothing): Reduces intensity spikes by averaging each point with two or more adjacent points. The more adjacent points that used, the stronger the smoothing effect.
3040
3041 /// sliding average smoothing (moving average smoothing): Reduces intensity spikes by averaging each point with two or more adjacent points. The more adjacent points that used, the stronger the smoothing effect.
3043
3044 /// non-standard data array: A data array that contains data not covered by any other term in this group. Please do not use this term, if the binary data array type might be commonly used - contact the PSI-MS working group in order to have another CV term added.
3046
3047 /// inclusive low intensity threshold: Threshold at or below which some action is taken.
3049
3050 /// inclusive high intensity threshold: Threshold at or above which some action is taken.
3052
3053 /// enhanced multiply charged spectrum: MS1 spectrum that is enriched in multiply-charged ions compared to singly-charged ions.
3055
3056 /// time-delayed fragmentation spectrum: MSn spectrum in which the product ions are collected after a time delay, which allows the observation of lower energy fragmentation processes after precursor ion activation.
3058
3059 /// enhanced resolution scan: Scan with enhanced resolution.
3061
3062 /// isolation window attribute: Isolation window parameter.
3064
3065 /// isolation window upper limit: The highest m/z being isolated in an isolation window.
3067
3068 /// isolation window lower limit: The lowest m/z being isolated in an isolation window.
3070
3071 /// no combination: Use this term if only one scan was recorded or there is no information about scans available.
3073
3074 /// spectrum title: A free-form text title describing a spectrum.
3076
3077 /// peak list scans: A list of scan numbers and or scan ranges associated with a peak list. If possible the list of scans should be converted to native spectrum identifiers instead of using this term.
3079
3080 /// peak list raw scans: A list of raw scans and or scan ranges used to generate a peak list. If possible the list of scans should be converted to native spectrum identifiers instead of using this term.
3082
3083 /// custom unreleased software tool: A software tool that has not yet been released. The value should describe the software. Please do not use this term for publicly available software - contact the PSI-MS working group in order to have another CV term added.
3085
3086 /// mass resolving power: The observed mass divided by the difference between two masses that can be separated: m/dm. The procedure by which dm was obtained and the mass at which the measurement was made should be reported.
3088
3089 /// area peak picking: Spectral peak processing conducted on the acquired data to convert profile data to centroided data. The area defined by all raw data points that belong to the peak is reported.
3091
3092 /// sum peak picking (area peak picking): Spectral peak processing conducted on the acquired data to convert profile data to centroided data. The area defined by all raw data points that belong to the peak is reported.
3094
3095 /// height peak picking: Spectral peak processing conducted on the acquired data to convert profile data to centroided data. The maximum intensity of all raw data points that belong to the peak is reported.
3097
3098 /// max peak picking (height peak picking): Spectral peak processing conducted on the acquired data to convert profile data to centroided data. The maximum intensity of all raw data points that belong to the peak is reported.
3100
3101 /// analyzer scan offset: Offset between two analyzers in a constant neutral loss or neutral gain scan. The value corresponds to the neutral loss or neutral gain value.
3103
3104 /// electromagnetic radiation spectrum: A plot of the relative intensity of electromagnetic radiation as a function of the wavelength.
3106
3107 /// EMR spectrum (electromagnetic radiation spectrum): A plot of the relative intensity of electromagnetic radiation as a function of the wavelength.
3109
3110 /// emission spectrum: A plot of the relative intensity of electromagnetic radiation emitted by atoms or molecules when excited.
3112
3113 /// absorption spectrum: A plot of the relative intensity of electromagnetic radiation absorbed by atoms or molecules when excited.
3115
3116 /// Th/s: Unit describing the scan rate of a spectrum in Thomson per second.
3117 MS_Th_s = 1000807,
3118
3119 /// chromatogram attribute: Chromatogram properties that are associated with a value.
3121
3122 /// chromatogram title: A free-form text title describing a chromatogram.
3124
3125 /// mass chromatogram: A plot of the relative abundance of a beam or other collection of ions as a function of the retention time.
3127
3128 /// electromagnetic radiation chromatogram: The measurement of electromagnetic properties as a function of the retention time.
3130
3131 /// EMR radiation chromatogram (electromagnetic radiation chromatogram): The measurement of electromagnetic properties as a function of the retention time.
3133
3134 /// absorption chromatogram: The measurement of light absorbed by the sample as a function of the retention time.
3136
3137 /// emission chromatogram: The measurement of light emitted by the sample as a function of the retention time.
3139
3140 /// counts per second: The number of counted events observed per second in one or a group of elements of a detector.
3142
3143 /// Bruker BAF format: Bruker BAF raw file format.
3145
3146 /// Bruker U2 format: Bruker HyStar U2 file format.
3148
3149 /// HyStar: Bruker software for hyphenated experiments.
3150 MS_HyStar = 1000817,
3151
3152 /// Acquity UPLC PDA: Acquity UPLC Photodiode Array Detector.
3154
3155 /// Acquity UPLC FLR: Acquity UPLC Fluorescence Detector.
3157
3158 /// flow rate array: A data array of flow rate measurements.
3160
3161 /// pressure array: A data array of pressure measurements.
3163
3164 /// temperature array: A data array of temperature measurements.
3166
3167 /// Bruker U2 nativeID format: Native format defined by declaration=xsd:nonNegativeInteger collection=xsd:nonNegativeInteger scan=xsd:nonNegativeInteger.
3169
3170 /// no nativeID format: No nativeID format indicates that the file tagged with this term does not contain spectra that can have a nativeID format.
3172
3173 /// Bruker FID format: Bruker FID file format.
3175
3176 /// elution time: The time of elution from all used chromatographic columns (one or more) in the chromatographic separation step, relative to the start of the chromatography.
3178
3179 /// isolation window target m/z: The primary or reference m/z about which the isolation window is defined.
3181
3182 /// isolation window lower offset: The extent of the isolation window in m/z below the isolation window target m/z. The lower and upper offsets may be asymmetric about the target m/z.
3184
3185 /// isolation window upper offset: The extent of the isolation window in m/z above the isolation window target m/z. The lower and upper offsets may be asymmetric about the target m/z.
3187
3188 /// sample preparation: Properties of the preparation steps which took place before the measurement was performed.
3190
3191 /// MALDI matrix application: Attributes to describe the technique how the sample is prepared with the matrix solution.
3193
3194 /// matrix application type: Describes the technique how the matrix is put on the sample target.
3196
3197 /// matrix solution: Describes the chemical solution used as matrix.
3199
3200 /// matrix solution concentration: Concentration of the chemical solution used as matrix.
3202
3203 /// dried droplet MALDI matrix preparation: Dried droplet in MALDI matrix preparation.
3205
3206 /// printed MALDI matrix preparation: Printed MALDI matrix preparation.
3208
3209 /// sprayed MALDI matrix preparation: Sprayed MALDI matrix preparation.
3211
3212 /// precoated MALDI sample plate: Precoated MALDI sample plate.
3214
3215 /// laser: Device that emits light (electromagnetic radiation) through a process called stimulated emission. The term is an acronym for Light Amplification by Stimulated Emission of Radiation.
3216 MS_laser = 1000840,
3217
3218 /// laser attribute: Laser properties that are associated with a value.
3220
3221 /// laser type: Type of laser used for desorption purpose.
3222 MS_laser_type = 1000842,
3223
3224 /// wavelength: The distance between two peaks of the emitted laser beam.
3226
3227 /// focus diameter x: Describes the diameter of the laser beam in x direction.
3229
3230 /// focus diameter y: Describes the diameter of the laser beam in y direction.
3232
3233 /// pulse energy: Describes output energy of the laser system. May be attenuated by filters or other means.
3235
3236 /// pulse duration: Describes how long the laser beam was emitted from the laser device.
3238
3239 /// attenuation: Describes the reduction of the intensity of the laser beam energy.
3241
3242 /// impact angle: Describes the angle between the laser beam and the sample target.
3244
3245 /// gas laser: Laser which is powered by a gaseous medium.
3246 MS_gas_laser = 1000850,
3247
3248 /// solid-state laser: Solid state laser materials are commonly made by doping a crystalline solid host with ions that provide the required energy states.
3250
3251 /// dye-laser: Dye lasers use an organic dye as the gain medium.
3252 MS_dye_laser = 1000852,
3253
3254 /// free electron laser: Free electron laser uses a relativistic electron beam as the lasing medium which move freely through a magnetic structure, hence the term.
3256
3257 /// LTQ XL: Thermo Scientific LTQ XL MS.
3258 MS_LTQ_XL = 1000854,
3259
3260 /// LTQ Velos: Thermo Scientific LTQ Velos MS.
3261 MS_LTQ_Velos = 1000855,
3262
3263 /// LTQ Velos ETD: Thermo Scientific LTQ Velos MS with ETD.
3265
3266 /// run attribute: Properties of the described run.
3268
3269 /// fraction identifier: Identier string that describes the sample fraction. This identifier should contain the fraction number(s) or similar information.
3271
3272 /// molecule: A molecules is a fundamental component of a chemical compound that is the smallest part of the compound that can participate in a chemical reaction.
3273 MS_molecule = 1000859,
3274
3275 /// peptide: A compound of low molecular weight that is composed of two or more amino acids.
3276 MS_peptide = 1000860,
3277
3278 /// chemical compound attribute: A describable property of a chemical compound.
3280
3281 /// isoelectric point: The pH of a solution at which a charged molecule does not migrate in an electric field.
3283
3284 /// pI (isoelectric point): The pH of a solution at which a charged molecule does not migrate in an electric field.
3286
3287 /// predicted isoelectric point: The pH of a solution at which a charged molecule would not migrate in an electric field, as predicted by a software algorithm.
3289
3290 /// predicted pI (predicted isoelectric point): The pH of a solution at which a charged molecule would not migrate in an electric field, as predicted by a software algorithm.
3292
3293 /// chemical compound formula: A combination of symbols used to express the chemical composition of a compound.
3295
3296 /// empirical formula: A chemical formula which expresses the proportions of the elements present in a substance.
3298
3299 /// molecular formula: A chemical compound formula expressing the number of atoms of each element present in a compound, without indicating how they are linked.
3301
3302 /// structural formula: A chemical formula showing the number of atoms of each element in a molecule, their spatial arrangement, and their linkage to each other.
3304
3305 /// SMILES string: The simplified molecular input line entry specification or SMILES is a specification for unambiguously describing the structure of a chemical compound using a short ASCII string.
3307
3308 /// collision gas pressure: The gas pressure of the collision gas used for collisional excitation.
3310
3311 /// 4000 QTRAP: SCIEX or Applied Biosystems|MDS SCIEX QTRAP 4000.
3313
3314 /// SRM software: Software used to predict, select, or optimize transitions or analyze the results of selected reaction monitoring runs.
3316
3317 /// MaRiMba: Software used to predict transitions for selected reaction monitoring experiments based on observed spectrum libraries developed and distributed by the Institute for Systems Biology.
3318 MS_MaRiMba = 1000872,
3319
3320 /// peptide attribute calculation software: Software used to predict or calculate numerical attributes of peptides.
3322
3323 /// SSRCalc: Sequence Specific Retention Calculator estimates the retention time of peptides based on their sequence.
3324 MS_SSRCalc = 1000874,
3325
3326 /// declustering potential: Potential difference between the orifice and the skimmer in volts.
3328
3329 /// cone voltage: Potential difference between the sampling cone/orifice in volts.
3331
3332 /// tube lens voltage: Potential difference setting of the tube lens in volts.
3334
3335 /// external reference identifier: An identifier/accession number to an external reference database.
3337
3338 /// PubMed identifier: A unique identifier for a publication in the PubMed database (MIR:00000015).
3340
3341 /// interchannel delay: The duration of intervals between scanning, during which the instrument configuration is switched.
3343
3344 /// chemical compound: A substance formed by chemical union of two or more elements or ingredients in definite proportion by weight.
3346
3347 /// protein: A compound composed of one or more chains of amino acids in a specific order determined by the base sequence of nucleotides in the DNA coding for the protein.
3348 MS_protein = 1000882,
3349
3350 /// protein short name: A short name or symbol of a protein (e.g., HSF 1 or HSF1_HUMAN).
3352
3353 /// protein attribute: An nonphysical attribute describing a specific protein.
3355
3356 /// protein accession: Accession number for a specific protein in a database.
3358
3359 /// protein name: A long name describing the function of the protein.
3361
3362 /// peptide attribute: A nonphysical attribute that can be used to describe a peptide.
3364
3365 /// unmodified peptide sequence: A sequence of letter symbols denoting the order of amino acids that compose the peptide, without encoding any amino acid mass modifications that might be present.
3367
3368 /// modified peptide sequence: A sequence of letter symbols denoting the order of amino acids that compose the peptide plus the encoding any amino acid modifications that are present.
3370
3371 /// peptide labeling state: A state description of how a peptide might be isotopically or isobarically labelled.
3373
3374 /// heavy labeled peptide: A peptide that has been created or labelled with some heavier-than-usual isotopes.
3376
3377 /// unlabeled peptide: A peptide that has not been labelled with heavier-than-usual isotopes. This is often referred to as \"light\" to distinguish from \"heavy\".
3379
3380 /// light labeled peptide (unlabeled peptide): A peptide that has not been labelled with heavier-than-usual isotopes. This is often referred to as \"light\" to distinguish from \"heavy\".
3382
3383 /// peptide group label: An arbitrary string label used to mark a set of peptides that belong together in a set, whereby the members are differentiated by different isotopic labels. For example, the heavy and light forms of the same peptide will both be assigned the same peptide group label.
3385
3386 /// retention time: A time interval from the start of chromatography when an analyte exits a chromatographic column.
3388
3389 /// local retention time: A time interval from the start of chromatography when an analyte exits an unspecified local chromatographic column and instrumental setup.
3391
3392 /// normalized retention time: A time interval from the start of chromatography when an analyte exits a standardized reference chromatographic column and instrumental setup.
3394
3395 /// predicted retention time: A time interval from the start of chromatography when an analyte exits a chromatographic column as predicted by a referenced software application.
3397
3398 /// standard: Something, such as a practice or a product, that is widely recognized or employed, especially because of its excellence.
3399 MS_standard = 1000898,
3400
3401 /// de facto standard: A practice or product that has become a standard not because it has been approved by a standards organization but because it is widely used and recognized by the industry as being standard.
3403
3404 /// minimum information standard: A specification of a minimum amount of information needed to reproduce or fully interpret a scientific result.
3406
3407 /// retention time normalization standard: A standard providing the retention times at which a set of reference compounds exit the reference chromatographic column.
3409
3410 /// H-PINS retention time normalization standard: The de facto standard providing the retention times at which a set of halogenated reference peptides exit the reference chromatographic column.
3412
3413 /// product ion series ordinal: The ordinal of the fragment within a specified ion series. (e.g. 8 for a y8 ion).
3415
3416 /// product ion m/z delta: The difference in m/z of the predicted m/z based on the assigned product ion minus the actual observed peak m/z.
3418
3419 /// percent of base peak times 100: The magnitude of a peak expressed in terms of the percentage of the magnitude of the base peak intensity multiplied by 100. The base peak is therefore 10000. This unit is common in normalized spectrum libraries.
3421
3422 /// peak intensity rank: Ordinal specifying the rank in intensity of a peak in a spectrum. Base peak is 1. The next most intense peak is 2, etc.
3424
3425 /// peak targeting suitability rank: Ordinal specifying the rank of a peak in a spectrum in terms of suitability for targeting. The most suitable peak is 1. The next most suitability peak is 2, etc. Suitability is algorithm and context dependant.
3427
3428 /// transition: A set of two m/z values corresponding to the precursor m/z and a fragment m/z that in combination can be used to identify or quantify a specific ion, although not necessarily uniquely.
3429 MS_transition = 1000908,
3430
3431 /// reaction (transition): A set of two m/z values corresponding to the precursor m/z and a fragment m/z that in combination can be used to identify or quantify a specific ion, although not necessarily uniquely.
3433
3434 /// transition validation method: The strategy used to validate that a transition is effective.
3436
3437 /// transition optimized on specified instrument: The transition has been optimized by direct injection of the peptide into an instrument specified in a separate term, and the optimum voltages and fragmentation energies have been determined.
3439
3440 /// transition validated with an MS/MS spectrum on specified instrument: The transition has been validated by obtaining an MS2 spectrum and demonstrating that the peak is detectable on the instrument specified with a separate term.
3442
3443 /// transition purported from an MS/MS spectrum on a different, specified instrument: The transition has been purported by obtaining an MS2 spectrum and demonstrating that the peak is detectable on the instrument specified with a separate term. However, the detecting instrument is of a different type (e.g. ion trap) than the instrument that the transition will eventually be used on (e.g. triple quad).
3445
3446 /// transition predicted by informatic analysis: The transition has been predicted by informatics software without any direct spectral evidence.
3448
3449 /// tab delimited text format: A file format that has two or more columns of tabular data where each column is separated by a TAB character.
3451
3452 /// retention time window attribute: An attribute of a window in time about which a peptide might elute from the column.
3454
3455 /// retention time window lower offset: The extent of the retention time window in time units below the target retention time. The lower and upper offsets may be asymmetric about the target time.
3457
3458 /// retention time window upper offset: The extent of the retention time window in time units above the target retention time. The lower and upper offsets may be asymmetric about the target time.
3460
3461 /// target list: A list of peptides or compounds and their expected m/z coordinates that can be used to cause a mass spectrometry to obtain spectra of those molecules specifically.
3463
3464 /// target inclusion exclusion priority: A priority setting specifying whether included or excluded targets have priority over the other.
3466
3467 /// includes supersede excludes: A priority setting specifying that included targets have priority over the excluded targets if there is a conflict.
3469
3470 /// excludes supersede includes: A priority setting specifying that excluded targets have priority over the included targets if there is a conflict.
3472
3473 /// Skyline: Software used to predict, select, and optimize transitions as well as analyze the results of selected reaction monitoring runs developed and distributed by the MacCoss lab at the University of Washington.
3474 MS_Skyline = 1000922,
3475
3476 /// TIQAM: Software used to predict, select, and optimize transitions for selected reaction monitoring experiments developed and distributed by the Institute for Systems Biology.
3477 MS_TIQAM = 1000923,
3478
3479 /// MaRiMba: Software used to predict transitions for selected reaction monitoring experiments based on observed spectrum libraries developed and distributed by the Institute for Systems Biology.
3481
3482 /// ATAQS: Software suite used to predict, select, and optimize transitions as well as analyze the results of selected reaction monitoring runs developed and distributed by the Institute for Systems Biology.
3483 MS_ATAQS = 1000925,
3484
3485 /// product interpretation rank: The integer rank given an interpretation of an observed product ion. For example, if y8 is selected as the most likely interpretation of a peak, then it is assigned a rank of 1.
3487
3488 /// ion injection time: The length of time spent filling an ion trapping device.
3490
3491 /// calibration spectrum: A spectrum derived from a special calibration source, rather than from the primary injected sample. A calibration spectrum is typically derived from a substance that can be used to correct systematic shift in m/z for spectra of the primary inject sample.
3493
3494 /// Shimadzu Biotech nativeID format: Native format defined by source=xsd:string start=xsd:nonNegativeInteger end=xsd:nonNegativeInteger.
3496
3497 /// Shimadzu Biotech database entity: Shimadzu Biotech format.
3499
3500 /// QTRAP 5500: Applied Biosystems|MDS SCIEX QTRAP 5500.
3501 MS_QTRAP_5500 = 1000931,
3502
3503 /// TripleTOF 5600: SCIEX TripleTOF 5600, a quadrupole - quadrupole - time-of-flight mass spectrometer.
3505
3506 /// protein modifications: Encoding of modifications of the protein sequence from the specified accession, written in PEFF notation.
3508
3509 /// gene name: Name of the gene from which the protein is translated.
3510 MS_gene_name = 1000934,
3511
3512 /// spectrum interpretation: Collection of terms from the PSI Proteome Informatics standards describing the interpretation of spectra.
3514
3515 /// SEQUEST:CleavesAt:
3517
3518 /// SEQUEST:ViewCV: SEQUEST View Input Parameters.
3520
3521 /// SEQUEST:OutputLines: Number of peptide results to show.
3523
3524 /// SEQUEST:DescriptionLines: Number of full protein descriptions to show for top N peptides.
3526
3527 /// de novo search: A de novo sequencing search (without database).
3529
3530 /// search database details: Details about the database searched.
3532
3533 /// database source: The organisation, project or laboratory from where the database is obtained (UniProt, NCBI, EBI, other).
3535
3536 /// database name: The name of the search database (nr, SwissProt or est_human).
3538
3539 /// database local file path: OBSOLETE: Use attribute in mzIdentML instead. Local file path of the search database from the search engine's point of view.
3541
3542 /// database original uri: URI, from where the search database was originally downloaded.
3544
3545 /// database version: OBSOLETE: Use attribute in mzIdentML instead. Version of the search database.
3547
3548 /// database release date: OBSOLETE: Use attribute in mzIdentML instead. Release date of the search database.
3550
3551 /// database type: Database containing amino acid or nucleic acid sequences.
3553
3554 /// database filtering: Was there filtering used on the database.
3556
3557 /// DB filter taxonomy: A taxonomy filter was to the database search.
3559
3560 /// DB filter on accession numbers: Filtering applied specifically by accession number pattern.
3562
3563 /// DB MW filter: Filtering applied specifically by protein molecular weight, specified as either a range or above/below a threshold value.
3565
3566 /// DB PI filter: Filtering applied specifically by predicted protein isoelectric focussing point (pI), specified as either a range or above/below a threshold value.
3568
3569 /// translation frame: The translated open reading frames from a nucleotide database considered in the search (range: 1-6).
3571
3572 /// translation table: The translation table used to translate the nucleotides to amino acids.
3574
3575 /// SEQUEST:NormalizeXCorrValues:
3577
3578 /// DB filter on sequence pattern: Filtering applied specifically by amino acid sequence pattern.
3580
3581 /// SEQUEST:SequenceHeaderFilter: String in the header of a sequence entry for that entry to be searched.
3583
3584 /// number of sequences searched: The number of sequences (proteins / nucleotides) from the database search after filtering.
3586
3587 /// number of peptide seqs compared to each spectrum: Number of peptide seqs compared to each spectrum.
3589
3590 /// spectral library search: A search using a library of spectra.
3592
3593 /// SEQUEST:SequencePartialFilter:
3595
3596 /// date / time search performed: OBSOLETE: use attribute in mzIdentML instead. Date and time of the actual search run.
3598
3599 /// search time taken: The time taken to complete the search in seconds.
3601
3602 /// SEQUEST:ShowFragmentIons: Flag indicating that fragment ions should be shown.
3604
3605 /// SEQUEST:Consensus: Specify depth as value of the CVParam.
3607
3608 /// intermediate analysis format: Type of the source file, the mzIdentML was created from.
3610
3611 /// SEQUEST:sortCV: SEQUEST View / Sort Input Parameters.
3613
3614 /// SEQUEST:LimitTo: Specify \"number of dtas shown\" as value of the CVParam.
3616
3617 /// cleavage agent details: Details of cleavage agent (enzyme).
3619
3620 /// cleavage agent name: The name of the cleavage agent.
3622
3623 /// SEQUEST:sort by dCn: Sort order of SEQUEST search results by the delta of the normalized correlation score.
3625
3626 /// SEQUEST:sort by dM: Sort order of SEQUEST search results by the difference between a theoretically calculated and the corresponding experimentally measured molecular mass M.
3628
3629 /// SEQUEST:sort by Ions: Sort order of SEQUEST search results given by the ions.
3631
3632 /// SEQUEST:sort by MH+: Sort order of SEQUEST search results given by the mass of the protonated ion.
3634
3635 /// SEQUEST:sort by P: Sort order of SEQUEST search results given by the probability.
3637
3638 /// multiple enzyme combination rules: OBSOLETE: use attribute independent in mzIdentML instead. Description of multiple enzyme digestion protocol, if any.
3640
3641 /// SEQUEST:sort by PreviousAminoAcid: Sort order of SEQUEST search results given by the previous amino acid.
3643
3644 /// SEQUEST:sort by Ref: Sort order of SEQUEST search results given by the reference.
3646
3647 /// modification parameters: Modification parameters for the search engine run.
3649
3650 /// modification specificity rule: The specificity rules for the modifications applied by the search engine.
3652
3653 /// tolerance on types: OBSOLETE: Tolerance on types.
3655
3656 /// quality estimation by manual validation: The quality estimation was done manually.
3658
3659 /// SEQUEST:sort by RSp: Sort order of SEQUEST search results given by the result 'Sp' of 'Rank/Sp' in the out file (peptide).
3661
3662 /// quality estimation method details: Method for quality estimation (manually or with decoy database).
3664
3665 /// neutral loss: OBSOLETE: replaced by MS:1000336 (neutral loss): Leave this to PSI-MOD.
3667
3668 /// Mascot MGF format: Mascot MGF file format.
3670
3671 /// TODOscoring model: OBSOLETE: There is Phenyx:ScoringModel for Phenyx! Scoring model (more detailed granularity). TODO: add some child terms.
3673
3674 /// ions series considered in search: The description of the DEPRECATED ion fragment series (including charges and neutral losses) that are considered by the search engine.
3676
3677 /// SEQUEST:sort by Sp: Sort order of SEQUEST search results by the Sp score.
3679
3680 /// SEQUEST:sort by TIC: Sort order of SEQUEST search results given by the total ion current.
3682
3683 /// SEQUEST:sort by Scan: Sort order of SEQUEST search results given by the scan number.
3685
3686 /// SEQUEST:sort by Sequence: Sort order of SEQUEST search results given by the sequence.
3688
3689 /// SEQUEST:sort by Sf: Sort order of SEQUEST search results given by the SEQUEST result 'Sf'.
3691
3692 /// database type amino acid: Database contains amino acid sequences.
3694
3695 /// database type nucleotide: Database contains nucleic acid sequences.
3697
3698 /// search type: Enumeration of type of search value (i.e. from PMF, sequence tag, MS2).
3700
3701 /// pmf search: A peptide mass fingerprint search.
3702 MS_pmf_search = 1001081,
3703
3704 /// tag search: A sequence tag search.
3705 MS_tag_search = 1001082,
3706
3707 /// ms-ms search: An MS2 search (with fragment ions).
3709
3710 /// database nr: Non-redundant GenBank sequence database.
3712
3713 /// protein-level identification attribute: Protein level information.
3715
3716 /// SEQUEST:sort by XCorr: Sort order of SEQUEST search results by the correlation score.
3718
3719 /// SEQUEST:ProcessCV: SEQUEST View / Process Input Parameters.
3721
3722 /// protein description: The protein description line from the sequence entry in the source database FASTA file.
3724
3725 /// molecule taxonomy: The taxonomy of the resultant molecule from the search.
3727
3728 /// taxonomy nomenclature: OBSOLETE: The system used to indicate taxonomy. There should be an enumerated list of options: latin name, NCBI TaxID, common name, Swiss-Prot species ID (ex. RABIT from the full protein ID ALBU_RABIT).
3730
3731 /// NoEnzyme:
3733
3734 /// peptide sequence-level identification statistic: Identification confidence metric for a peptide.
3736
3737 /// sequence coverage: The percent coverage for the protein based upon the matched peptide sequences (can be calculated).
3739
3740 /// SEQUEST:sort by z: Sort order of SEQUEST search results given by the charge.
3742
3743 /// SEQUEST:ProcessAll:
3745
3746 /// SEQUEST:TopPercentMostIntense: Specify \"percentage\" as value of the CVParam.
3748
3749 /// distinct peptide sequences: This counts distinct sequences hitting the protein without regard to a minimal confidence threshold.
3751
3752 /// confident distinct peptide sequences: This counts the number of distinct peptide sequences. Multiple charge states and multiple modification states do NOT count as multiple sequences. The definition of 'confident' must be qualified elsewhere.
3754
3755 /// confident peptide qualification: The point of this entry is to define what is meant by confident for the term Confident distinct peptide sequence and/or Confident peptides. Example 1 - metric=Paragon:Confidence value=95 sense=greater than Example 2 - metric=Mascot:Eval value=0.05 sense=less than.
3757
3758 /// confident peptide sequence number: This counts the number of peptide sequences without regard to whether they are distinct. Multiple charges states and multiple modification states DO count as multiple peptides. The definition of 'confident' must be qualified elsewhere.
3760
3761 /// protein group or subset relationship: Protein group or subset relationships.
3763
3764 /// SEQUEST:Chromatogram:
3766
3767 /// SEQUEST:InfoAndLog:
3769
3770 /// database UniProtKB/Swiss-Prot: The name of the UniProtKB/Swiss-Prot knowledgebase.
3772
3773 /// peptide sequence-level identification attribute: Peptide level information.
3775
3776 /// SEQUEST:TopNumber: Specify \"number\" as value of the CVParam.
3778
3779 /// data stored in database: Source file for this mzIdentML was a data set in a database.
3781
3782 /// param: a ion: Parameter information, type of product: a ion with charge on the N-terminal side.
3784
3785 /// SEQUEST:CullTo: Specify cull string as value of the CVParam.
3787
3788 /// SEQUEST:modeCV: SEQUEST Mode Input Parameters.
3790
3791 /// SEQUEST:Full:
3793
3794 /// n-terminal flanking residue: The residue preceding the first amino acid in the peptide sequence as it occurs in the protein. Use 'N-term' to denote if the peptide starts at the N terminus of the protein.
3796
3797 /// c-terminal flanking residue: The residue following the last amino acid in the peptide sequence as it occurs in the protein. Use 'C-term' to denote if the peptide ends at the C terminus of the protein.
3799
3800 /// retention time(s): Retention time of the spectrum from the source file.
3802
3803 /// scan number(s): OBSOLETE: use spectrumID attribute of SpectrumIdentificationResult. Take from mzData.
3805
3806 /// single protein identification statistic: Results specific for one protein as part of a protein ambiguity group (a result not valid for all the other proteins in the protein ambiguity group).
3808
3809 /// theoretical mass: The theoretical mass of the molecule (e.g. the peptide sequence and its modifications).
3811
3812 /// param: b ion: Parameter information, type of product: b ion with charge on the N-terminal side.
3814
3815 /// param: c ion: Parameter information, type of product: c ion with charge on the N-terminal side.
3817
3818 /// SEQUEST:FormatAndLinks:
3820
3821 /// number of matched peaks: The number of peaks that were matched as qualified by the ion series considered field. If a peak matches multiple ions then only 1 would be added the count.
3823
3824 /// ions series considered: The ion series that were used during the calculation of the count (e.g. a, b, c, d, v, w, x, y, z, a-H2O, a-NH3, b-H2O, b-NH3, y-H2O, y-NH3, b-H20, b+, z-, z+1, z+2, b-H3PO4, y-H3PO4, immonium, internal ya, internal yb).
3826
3827 /// number of peaks used: The number of peaks from the original peak list that are used to calculate the scores for a particular search engine. All ions that have the opportunity to match or be counted even if they don't.
3829
3830 /// number of peaks submitted: The number of peaks from the original peaks listed that were submitted to the search engine.
3832
3833 /// manual validation: Result of quality estimation: decision of a manual validation.
3835
3836 /// SEQUEST:Fast:
3838
3839 /// peptide sharing details: Accessions Containing Sequence - Accessions for each protein containing this peptide.
3841
3842 /// SEQUEST:selectCV: SEQUEST Select Input Parameters.
3844
3845 /// quantification information: Quantification information.
3847
3848 /// peptide raw area: Peptide raw area.
3850
3851 /// error on peptide area: Error on peptide area.
3853
3854 /// peptide ratio: Peptide ratio.
3856
3857 /// error on peptide ratio: Error on peptide ratio.
3859
3860 /// protein ratio: Protein ratio.
3862
3863 /// error on protein ratio: Error on protein ratio.
3865
3866 /// p-value (protein diff from 1 randomly): P-value (protein diff from 1 randomly).
3868
3869 /// absolute quantity: Absolute quantity in terms of real concentration or molecule copy number in sample.
3871
3872 /// error on absolute quantity: Error on absolute quantity.
3874
3875 /// quantitation software name: Quantitation software name.
3877
3878 /// quantitation software version: Quantitation software version.
3880
3881 /// intensity of precursor ion: The intensity of the precursor ion.
3883
3884 /// database IPI_human: International Protein Index database for Homo sapiens sequences.
3886
3887 /// PSM-level search engine specific statistic: Search engine specific peptide spectrum match scores.
3889
3890 /// SEQUEST:SelectDefault:
3892
3893 /// SEQUEST:SelectAdvancedCV: SEQUEST Select Advanced Input Parameters.
3895
3896 /// param: a ion-NH3 DEPRECATED: Ion a-NH3 parameter information, type of product: a ion with lost ammonia.
3898
3899 /// protein ambiguity group result details:
3901
3902 /// param: a ion-H2O DEPRECATED: Ion a-H2O if a significant and fragment includes STED.
3904
3905 /// param: b ion-NH3 DEPRECATED: Ion b-NH3 parameter information, type of product: b ion with lost ammonia.
3907
3908 /// param: b ion-H2O DEPRECATED: Ion b-H2O if b significant and fragment includes STED.
3910
3911 /// param: y ion-NH3 DEPRECATED: Ion y-NH3 parameter information, type of product: y ion with lost ammonia.
3913
3914 /// param: y ion-H2O DEPRECATED:
3916
3917 /// search engine specific score: Search engine specific scores.
3919
3920 /// SEQUEST:probability: The SEQUEST result 'Probability'.
3922
3923 /// SEQUEST:xcorr: The SEQUEST result 'XCorr'.
3925
3926 /// SEQUEST:deltacn: The SEQUEST result 'DeltaCn'.
3928
3929 /// SEQUEST:sp: The SEQUEST result 'Sp' (protein).
3930 MS_SEQUEST_sp = 1001157,
3931
3932 /// SEQUEST:Uniq:
3934
3935 /// SEQUEST:expectation value: The SEQUEST result 'Expectation value'.
3937
3938 /// SEQUEST:sf: The SEQUEST result 'Sf'.
3939 MS_SEQUEST_sf = 1001160,
3940
3941 /// SEQUEST:matched ions: The SEQUEST result 'Matched Ions'.
3943
3944 /// SEQUEST:total ions: The SEQUEST result 'Total Ions'.
3946
3947 /// SEQUEST:consensus score: The SEQUEST result 'Consensus Score'.
3949
3950 /// Paragon:unused protscore: The Paragon result 'Unused ProtScore'.
3952
3953 /// Paragon:total protscore: The Paragon result 'Total ProtScore'.
3955
3956 /// Paragon:score: The Paragon result 'Score'.
3958
3959 /// Paragon:confidence: The Paragon result 'Confidence'.
3961
3962 /// Paragon:expression error factor: The Paragon result 'Expression Error Factor'.
3964
3965 /// Paragon:expression change p-value: The Paragon result 'Expression change P-value'.
3967
3968 /// Paragon:contrib: The Paragon result 'Contrib'.
3970
3971 /// Mascot:score: The Mascot result 'Score'.
3973
3974 /// Mascot:expectation value: The Mascot result 'expectation value'.
3976
3977 /// Mascot:matched ions: The Mascot result 'Matched ions'.
3979
3980 /// Mascot:total ions: The Mascot result 'Total ions'.
3982
3983 /// peptide shared in multiple proteins: A peptide matching multiple proteins.
3985
3986 /// (?<=[KR])(?!P): Regular expression for Trypsin.
3988
3989 /// number of molecular hypothesis considered: Number of Molecular Hypothesis Considered - This is the number of molecules (e.g. peptides for proteomics) considered for a particular search.
3991
3992 /// database EST: Expressed sequence tag nucleotide sequence database.
3994
3995 /// Cleavage agent regular expression: Regular expressions for cleavage enzymes.
3997
3998 /// search statistics: The details of the actual run of the search.
4000
4001 /// modification specificity peptide N-term: As parameter for search engine: apply the modification only at the N-terminus of a peptide.
4003
4004 /// modification specificity peptide C-term: As parameter for search engine: apply the modification only at the C-terminus of a peptide.
4006
4007 /// p-value: Quality estimation by p-value.
4009
4010 /// Expect value: Result of quality estimation: Expect value.
4012
4013 /// confidence score: Result of quality estimation: confidence score.
4015
4016 /// quality estimation with decoy database: Quality estimation by decoy database.
4018
4019 /// decoy DB type reverse: Decoy type: Amino acids of protein sequences are used in reverse order.
4021
4022 /// decoy DB type randomized: Decoy type: Amino acids of protein sequences are randomized (keeping the original protein mass).
4024
4025 /// DB composition target+decoy: Decoy database composition: database contains original (target) and decoy entries.
4027
4028 /// protein identification confidence metric: Identification confidence metric for a protein.
4030
4031 /// Mascot DAT format: Source file for this mzIdentML was in Mascot DAT file format.
4033
4034 /// SEQUEST out file format: Source file for this mzIdentML was in SEQUEST out file format.
4036
4037 /// DB MW filter maximum: Maximum value of molecular weight filter.
4039
4040 /// DB MW filter minimum: Minimum value of molecular weight filter.
4042
4043 /// DB PI filter maximum: Maximum value of isoelectric point filter.
4045
4046 /// DB PI filter minimum: Minimum value of isoelectric point filter.
4048
4049 /// Mascot: The name of the Mascot search engine.
4050 MS_Mascot = 1001207,
4051
4052 /// SEQUEST: The name of the SEQUEST search engine.
4053 MS_SEQUEST = 1001208,
4054
4055 /// Phenyx: The name of the Phenyx search engine.
4056 MS_Phenyx = 1001209,
4057
4058 /// mass type settings: The type of mass difference value to be considered by the search engine (monoisotopic or average).
4060
4061 /// parent mass type mono: Mass type setting for parent mass was monoisotopic.
4063
4064 /// parent mass type average: Mass type setting for parent mass was average isotopic.
4066
4067 /// search result details: OBSOLETE: Scores and global result characteristics.
4069
4070 /// protein-level global FDR: Estimation of the global false discovery rate of proteins.
4072
4073 /// SEQUEST:PeptideSp: The SEQUEST result 'Sp' in out file (peptide).
4075
4076 /// SEQUEST:PeptideRankSp: The SEQUEST result 'Sp' of 'Rank/Sp' in out file (peptide). Also called 'rsp'.
4078
4079 /// SEQUEST:PeptideNumber: The SEQUEST result '#' in out file (peptide).
4081
4082 /// SEQUEST:PeptideIdnumber: The SEQUEST result 'Id#' in out file (peptide).
4084
4085 /// frag: y ion: Fragmentation information, type of product: y ion.
4087
4088 /// product ion attribute: Fragmentation information like ion types.
4090
4091 /// frag: b ion - H2O: Fragmentation information, type of product: b ion without water.
4093
4094 /// frag: y ion - H2O: Fragmentation information, type of product: y ion without water.
4096
4097 /// frag: b ion: Fragmentation information, type of product: b ion.
4099
4100 /// product ion m/z: The m/z of the product ion.
4102
4103 /// fragment ion m/z (product ion m/z): The m/z of the product ion.
4105
4106 /// product ion intensity: The intensity of a single product ion.
4108
4109 /// fragment ion intensity (product ion intensity): The intensity of a single product ion.
4111
4112 /// product ion m/z error: The product ion m/z error.
4114
4115 /// frag: x ion: Fragmentation information, type of product: x ion.
4117
4118 /// frag: a ion: Fragmentation information, type of product: a ion.
4120
4121 /// frag: z ion: Fragmentation information, type of product: z ion.
4123
4124 /// frag: c ion: Fragmentation information, type of product: c ion.
4126
4127 /// frag: b ion - NH3: Ion b-NH3 fragmentation information, type of product: b ion without ammonia.
4129
4130 /// frag: y ion - NH3: Ion y-NH3 fragmentation information, type of product: y ion without ammonia.
4132
4133 /// frag: a ion - H2O: Fragmentation information, type of product: a ion without water.
4135
4136 /// frag: a ion - NH3: Ion a-NH3 fragmentation information, type of product: a ion without ammonia.
4138
4139 /// frag: d ion: Fragmentation information, type of product: d ion.
4141
4142 /// frag: v ion: Fragmentation information, type of product: v ion.
4144
4145 /// frag: w ion: Fragmentation information, type of product: w ion.
4147
4148 /// frag: immonium ion: Fragmentation information, type of product: immonium ion.
4150
4151 /// non-identified ion: Non-identified ion.
4153
4154 /// co-eluting ion: Co-eluting ion.
4156
4157 /// SEQUEST out folder: Source file for this mzIdentML was a SEQUEST folder with its out files.
4159
4160 /// SEQUEST summary: Source file for this mzIdentML was a SEQUEST summary page (proteins).
4162
4163 /// PerSeptive PKS format: PerSeptive peak list file format.
4165
4166 /// SCIEX API III format: PE SCIEX peak list file format.
4168
4169 /// Bruker XML format: Bruker data exchange XML format.
4171
4172 /// search input details: Details describing the search input.
4174
4175 /// local FDR: Result of quality estimation: the local FDR at the current position of a sorted list.
4176 MS_local_FDR = 1001250,
4177
4178 /// Trypsin: Enzyme trypsin.
4179 MS_Trypsin = 1001251,
4180
4181 /// DB source EBI: Database source EBI.
4183
4184 /// DB source NCBI: Database source NCBI.
4186
4187 /// DB source UniProt: Database source UniProt.
4189
4190 /// fragment mass type average: Mass type setting for fragment mass was average isotopic.
4192
4193 /// fragment mass type mono: Mass type setting for fragment mass was monoisotopic.
4195
4196 /// param: v ion: Parameter information, type of product: side chain loss v ion.
4198
4199 /// param: d ion: Parameter information, type of product: side chain loss d ion.
4201
4202 /// param: immonium ion: Parameter information, type of product: immonium ion.
4204
4205 /// param: w ion: Parameter information, type of product: side chain loss w ion.
4207
4208 /// param: x ion: Parameter information, type of product: x ion with charge on the C-terminal side.
4210
4211 /// param: y ion: Parameter information, type of product: y ion with charge on the C-terminal side.
4213
4214 /// param: z ion: Parameter information, type of product: z ion with charge on the C-terminal side.
4216
4217 /// role type: Role of a Person or Organization.
4218 MS_role_type = 1001266,
4219
4220 /// software vendor: Software vendor role.
4222
4223 /// programmer: Programmer role.
4224 MS_programmer = 1001268,
4225
4226 /// instrument vendor: Instrument vendor role.
4228
4229 /// lab personnel: Lab personnel role.
4231
4232 /// researcher: Researcher role.
4233 MS_researcher = 1001271,
4234
4235 /// (?<=R)(?!P): Regular expression for Arg-C.
4237
4238 /// (?=[BD]): Regular expression for Asp-N.
4239 MS_____BD__ = 1001273,
4240
4241 /// (?=[DE]): Regular expression for Asp-N-ambic.
4242 MS_____DE__ = 1001274,
4243
4244 /// ProteinScape SearchEvent: Source data for this mzIdentML was a ProteinScape SearchEvent.
4246
4247 /// ProteinScape Gel: Source data for this mzIdentML was a ProteinScape Gel.
4249
4250 /// decoy DB accession regexp: Specify the regular expression for decoy accession numbers.
4252
4253 /// decoy DB derived from: The name of the database, the search database was derived from.
4255
4256 /// database IPI_mouse: International Protein Index database for Mus musculus sequences.
4258
4259 /// database IPI_rat: International Protein Index database for Rattus norvegicus sequences.
4261
4262 /// database IPI_zebrafish: International Protein Index database for Danio rerio sequences.
4264
4265 /// database IPI_chicken: International Protein Index database for Gallus gallus sequences.
4267
4268 /// database IPI_cow: International Protein Index database for Bos taurus sequences.
4270
4271 /// database IPI_arabidopsis: International Protein Index database for Arabidopsis thaliana sequences.
4273
4274 /// decoy DB from nr: Decoy database from a non-redundant GenBank sequence database.
4276
4277 /// decoy DB from IPI_rat: Decoy database from a International Protein Index database for Rattus norvegicus.
4279
4280 /// decoy DB from IPI_mouse: Decoy database from a International Protein Index database for Mus musculus.
4282
4283 /// decoy DB from IPI_arabidopsis: Decoy database from a International Protein Index database for Arabidopsis thaliana.
4285
4286 /// decoy DB from EST: Decoy database from an expressed sequence tag nucleotide sequence database.
4288
4289 /// decoy DB from IPI_zebrafish: Decoy database from a International Protein Index database for Danio rerio.
4291
4292 /// decoy DB from UniProtKB/Swiss-Prot: Decoy database from a Swiss-Prot protein sequence database.
4294
4295 /// decoy DB from IPI_chicken: Decoy database from a International Protein Index database for Gallus gallus.
4297
4298 /// decoy DB from IPI_cow: Decoy database from a International Protein Index database for Bos taurus.
4300
4301 /// decoy DB from IPI_human: Decoy database from a International Protein Index database for Homo sapiens.
4303
4304 /// protein rank: The rank of the protein in a list sorted by the search engine.
4306
4307 /// search engine specific input parameter: Search engine specific input parameters.
4309
4310 /// Arg-C: Endoproteinase Arg-C.
4311 MS_Arg_C = 1001303,
4312
4313 /// Trypsin/R (Arg-C): Endoproteinase Arg-C.
4315
4316 /// Clostripain (Arg-C): Endoproteinase Arg-C.
4318
4319 /// Asp-N: Endoproteinase Asp-N.
4320 MS_Asp_N = 1001304,
4321
4322 /// Asp-N_ambic: Enzyme Asp-N, Ammonium Bicarbonate (AmBic).
4324
4325 /// Chymotrypsin: Enzyme chymotrypsin.
4327
4328 /// CNBr: Cyanogen bromide.
4329 MS_CNBr = 1001307,
4330
4331 /// Formic_acid: Formic acid.
4333
4334 /// Lys-C: Endoproteinase Lys-C.
4335 MS_Lys_C = 1001309,
4336
4337 /// Trypsin/K (Lys-C): Endoproteinase Lys-C.
4339
4340 /// Lys-C/P: Proteinase Lys-C/P.
4341 MS_Lys_C_P = 1001310,
4342
4343 /// PepsinA: PepsinA proteinase.
4344 MS_PepsinA = 1001311,
4345
4346 /// TrypChymo: Cleavage agent TrypChymo.
4347 MS_TrypChymo = 1001312,
4348
4349 /// Trypsin/P: Cleavage agent Trypsin/P.
4350 MS_Trypsin_P = 1001313,
4351
4352 /// V8-DE: Cleavage agent V8-DE.
4353 MS_V8_DE = 1001314,
4354
4355 /// V8-E: Cleavage agent V8-E.
4356 MS_V8_E = 1001315,
4357
4358 /// Mascot:SigThreshold: Significance threshold below which the p-value of a peptide match must lie to be considered statistically significant (default 0.05).
4360
4361 /// Mascot:MaxProteinHits: The number of protein hits to display in the report. If 'Auto', all protein hits that have a protein score exceeding the average peptide identity threshold are reported. Otherwise an integer at least 1.
4363
4364 /// Mascot:ProteinScoringMethod: Mascot protein scoring method; either 'Standard' or 'MudPIT'.
4366
4367 /// Mascot:MinMSMSThreshold: Mascot peptide match ion score threshold. If between 0 and 1, then peptide matches whose expect value exceeds the thresholds are suppressed; if at least 1, then peptide matches whose ion score is below the threshold are suppressed.
4369
4370 /// Mascot:ShowHomologousProteinsWithSamePeptides: If true, show (sequence or spectrum) same-set proteins. Otherwise they are suppressed.
4372
4373 /// Mascot:ShowHomologousProteinsWithSubsetOfPeptides: If true, show (sequence or spectrum) sub-set and subsumable proteins. Otherwise they are suppressed.
4375
4376 /// Mascot:RequireBoldRed: Only used in Peptide Summary and Select Summary reports. If true, a peptide match must be 'bold red' to be included in the report; bold red means the peptide is a top ranking match in a query and appears for the first time (in linear order) in the list of protein hits.
4378
4379 /// Mascot:UseUnigeneClustering: If true, then the search results are against a nucleic acid database and Unigene clustering is enabled. Otherwise UniGene clustering is not in use.
4381
4382 /// Mascot:IncludeErrorTolerantMatches: If true, then the search results are error tolerant and peptide matches from the second pass are included in search results. Otherwise no error tolerant peptide matches are included.
4384
4385 /// Mascot:ShowDecoyMatches: If true, then the search results are against an automatically generated decoy database and the reported peptide matches and protein hits come from the decoy database. Otherwise peptide matches and protein hits come from the original database.
4387
4388 /// add_others: OBSOLETE.
4390
4391 /// OMSSA:evalue: OMSSA E-value.
4393
4394 /// OMSSA:pvalue: OMSSA p-value.
4396
4397 /// X!Tandem:expect: The X!Tandem expectation value.
4399
4400 /// X!Tandem:hyperscore: The X!Tandem hyperscore.
4402
4403 /// (?<=[FYWL])(?!P): Regular expression for Chymotrypsin.
4405
4406 /// (?<=M): Regular expression for CNBr.
4407 MS_____M_ = 1001333,
4408
4409 /// ((?<=D))|((?=D)): Regular expression for formic acid.
4411
4412 /// (?<=K)(?!P): Regular expression for Lys-C.
4414
4415 /// (?<=K): Regular expression for Lys-C/P.
4416 MS_____K_ = 1001336,
4417
4418 /// (?<=[FL]): Regular expression for PepsinA.
4419 MS______FL__ = 1001337,
4420
4421 /// (?<=[FYWLKR])(?!P): Regular expression for TrypChymo.
4423
4424 /// (?<=[KR]): Regular expression for Trypsin/P.
4425 MS______KR__ = 1001339,
4426
4427 /// (?<=[BDEZ])(?!P): Regular expression for V8-DE.
4429
4430 /// (?<=[EZ])(?!P): Regular expression for V8-E.
4432
4433 /// database sequence details: Details about a single database sequence.
4435
4436 /// NA sequence: The sequence is a nucleic acid sequence.
4438
4439 /// AA sequence: The sequence is a amino acid sequence.
4441
4442 /// mass table source: Children of this term specify the source of the mass table used.
4444
4445 /// AAIndex mass table: The masses used in the mass table are taken from AAIndex.
4447
4448 /// database file formats: The children of this term define file formats of the sequence database used.
4450
4451 /// FASTA format: The sequence database was stored in the FASTA format.
4453
4454 /// ASN.1: The sequence database was stored in the Abstract Syntax Notation 1 format.
4455 MS_ASN_1 = 1001349,
4456
4457 /// NCBI *.p*: The sequence database was stored in the NCBI formatdb (*.p*) format.
4458 MS_NCBI___p_ = 1001350,
4459
4460 /// clustal aln: ClustalW ALN (multiple alignment) format.
4462
4463 /// embl em: EMBL entry format.
4464 MS_embl_em = 1001352,
4465
4466 /// NBRF PIR: The NBRF PIR was used as format.
4467 MS_NBRF_PIR = 1001353,
4468
4469 /// mass table options: Root node for options for the mass table used.
4471
4472 /// peptide descriptions: Descriptions of peptides.
4474
4475 /// spectrum descriptions: Descriptions of the input spectra.
4477
4478 /// spectrum quality descriptions: Description of the quality of the input spectrum.
4480
4481 /// msmsEval quality: This term reports the quality of the spectrum assigned by msmsEval.
4483
4484 /// ambiguous residues: Children of this term describe ambiguous residues.
4486
4487 /// alternate single letter codes: List of standard residue one letter codes which are used to replace a non-standard.
4489
4490 /// alternate mass: List of masses a non-standard letter code is replaced with.
4492
4493 /// number of unmatched peaks: The number of unmatched peaks.
4495
4496 /// peptide unique to one protein: A peptide matching only one.
4498
4499 /// peptide sequence-level global FDR: Estimation of the global false discovery rate for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry).
4501
4502 /// frag: internal yb ion: Fragmentation information, type of product: internal yb ion.
4504
4505 /// frag: internal ya ion: Fragmentation information, type of product: internal ya ion.
4507
4508 /// frag: z+1 ion: Fragmentation information, type of product: z+1 ion.
4510
4511 /// frag: z+2 ion: Fragmentation information, type of product: z+2 ion.
4513
4514 /// text format: Simple text file format of \"m/z [intensity]\" values for a PMF (or single MS2) search.
4516
4517 /// Mascot:homology threshold: The Mascot result 'homology threshold'.
4519
4520 /// Mascot:identity threshold: The Mascot result 'identity threshold'.
4522
4523 /// SEQUEST:Sequences:
4525
4526 /// SEQUEST:TIC: SEQUEST total ion current.
4528
4529 /// SEQUEST:Sum:
4531
4532 /// Phenyx:Instrument Type: The instrument type parameter value in Phenyx.
4534
4535 /// Phenyx:Scoring Model: The selected scoring model in Phenyx.
4537
4538 /// Phenyx:Default Parent Charge: The default parent charge value in Phenyx.
4540
4541 /// Phenyx:Trust Parent Charge: The parameter in Phenyx that specifies if the experimental charge state is to be considered as correct.
4543
4544 /// Phenyx:Turbo: The turbo mode parameter in Phenyx.
4546
4547 /// Phenyx:Turbo:ErrorTol: The maximal allowed fragment m/z error filter considered in the turbo mode of Phenyx.
4549
4550 /// Phenyx:Turbo:Coverage: The minimal peptide sequence coverage value, expressed in percent, considered in the turbo mode of Phenyx.
4552
4553 /// Phenyx:Turbo:Series: The list of ion series considered in the turbo mode of Phenyx.
4555
4556 /// Phenyx:MinPepLength: The minimal number of residues for a peptide to be considered for a valid identification in Phenyx.
4558
4559 /// Phenyx:MinPepzscore: The minimal peptide z-score for a peptide to be considered for a valid identification in Phenyx.
4561
4562 /// Phenyx:MaxPepPvalue: The maximal peptide p-value for a peptide to be considered for a valid identification in Phenyx.
4564
4565 /// Phenyx:AC Score: The minimal protein score required for a protein database entry to be displayed in the list of identified proteins in Phenyx.
4567
4568 /// Phenyx:Conflict Resolution: The parameter in Phenyx that specifies if the conflict resolution algorithm is to be used.
4570
4571 /// Phenyx:AC: The primary sequence database identifier of a protein in Phenyx.
4572 MS_Phenyx_AC = 1001388,
4573
4574 /// Phenyx:ID: A secondary sequence database identifier of a protein in Phenyx.
4575 MS_Phenyx_ID = 1001389,
4576
4577 /// Phenyx:Score: The protein score of a protein match in Phenyx.
4579
4580 /// Phenyx:Peptides1: First number of phenyx result \"#Peptides\".
4582
4583 /// Phenyx:Peptides2: Second number of phenyx result \"#Peptides\".
4585
4586 /// Phenyx:Auto: The value of the automatic peptide acceptance filter in Phenyx.
4588
4589 /// Phenyx:User: The value of the user-defined peptide acceptance filter in Phenyx.
4591
4592 /// Phenyx:Pepzscore: The z-score value of a peptide sequence match in Phenyx.
4594
4595 /// Phenyx:PepPvalue: The p-value of a peptide sequence match in Phenyx.
4597
4598 /// Phenyx:NumberOfMC: The number of missed cleavages of a peptide sequence in Phenyx.
4600
4601 /// Phenyx:Modif: The expression of the nature and position(s) of modified residue(s) on a matched peptide sequence in Phenyx.
4603
4604 /// OMSSA csv format: Source file for this mzIdentML was in OMSSA csv file format.
4606
4607 /// OMSSA xml format: Source file for this mzIdentML was in OMSSA xml file format.
4609
4610 /// X!Tandem xml format: Source file for this mzIdentML was in X!Tandem xml file format.
4612
4613 /// spectrum identification result details: This subsection describes terms which can describe details of spectrum identification results.
4615
4616 /// param: internal yb ion: Parameter information, type of product: internal yb ion.
4618
4619 /// param: internal ya ion: Parameter information, type of product: internal ya ion.
4621
4622 /// param: z+1 ion: Parameter information, type of product: z+1 ion.
4624
4625 /// param: z+2 ion: Parameter information, type of product: z+2 ion.
4627
4628 /// translation start codons: The translation start codons used to translate the nucleotides to amino acids.
4630
4631 /// search tolerance specification: Specification of the search tolerance.
4633
4634 /// search tolerance plus value:
4636
4637 /// search tolerance minus value:
4639
4640 /// MGF scans: OBSOLETE: replaced by MS:1000797 (peak list scans): This term can hold the scans attribute from an MGF input file.
4642
4643 /// MGF raw scans: OBSOLETE: replaced by MS:1000798 (peak list raw scans): This term can hold the raw scans attribute from an MGF input file.
4645
4646 /// spectrum title: OBSOLETE: replaced by MS:1000796 (spectrum title): Holds the spectrum title from different input file formats, e.g. MGF TITLE.
4648
4649 /// SpectraST:dot: SpectraST dot product of two spectra, measuring spectral similarity.
4651
4652 /// SpectraST:dot_bias: SpectraST measure of how much of the dot product is dominated by a few peaks.
4654
4655 /// SpectraST:discriminant score F: SpectraST spectrum score.
4657
4658 /// SpectraST:delta: SpectraST normalised difference between dot product of top hit and runner-up.
4660
4661 /// pepXML format: The XML-based pepXML file format for encoding PSM information, created and maintained by the Trans-Proteomic Pipeline developers.
4663
4664 /// protXML format: The XML-based protXML file format for encoding protein identifications, created and maintained by the Trans-Proteomic Pipeline developers.
4666
4667 /// translation table description: A URL that describes the translation table used to translate the nucleotides to amino acids.
4669
4670 /// ProteinExtractor:Methodname: Name of the used method in the ProteinExtractor algorithm.
4672
4673 /// ProteinExtractor:GenerateNonRedundant: Flag indicating if a non redundant scoring should be generated.
4675
4676 /// ProteinExtractor:IncludeIdentified: Flag indicating if identified proteins should be included.
4678
4679 /// ProteinExtractor:MaxNumberOfProteins: The maximum number of proteins to consider.
4681
4682 /// ProteinExtractor:MaxProteinMass: The maximum considered mass for a protein.
4684
4685 /// ProteinExtractor:MinNumberOfPeptides: The minimum number of proteins to consider.
4687
4688 /// ProteinExtractor:UseMascot: Flag indicating to include Mascot scoring for calculation of the ProteinExtractor meta score.
4690
4691 /// ProteinExtractor:MascotPeptideScoreThreshold: Only peptides with scores higher than that threshold are taken into account in Mascot scoring for calculation of the ProteinExtractor meta score.
4693
4694 /// ProteinExtractor:MascotUniqueScore: In the final result each protein must have at least one peptide above this Mascot score threshold in ProteinExtractor meta score calculation.
4696
4697 /// ProteinExtractor:MascotUseIdentityScore:
4699
4700 /// ProteinExtractor:MascotWeighting: Influence of Mascot search engine in the process of merging the search engine specific protein lists into the global protein list of ProteinExtractor.
4702
4703 /// ProteinExtractor:UseSequest: Flag indicating to include SEQUEST scoring for calculation of the ProteinExtractor meta score.
4705
4706 /// ProteinExtractor:SequestPeptideScoreThreshold: Only peptides with scores higher than that threshold are taken into account in SEQUEST scoring for calculation of the ProteinExtractor meta score.
4708
4709 /// ProteinExtractor:SequestUniqueScore: In the final result each protein must have at least one peptide above this SEQUEST score threshold in ProteinExtractor meta score calculation.
4711
4712 /// ProteinExtractor:SequestWeighting: Influence of SEQUEST search engine in the process of merging the search engine specific protein lists into the global protein list of ProteinExtractor.
4714
4715 /// ProteinExtractor:UseProteinSolver: Flag indicating to include ProteinSolver scoring for calculation of the ProteinExtractor meta score.
4717
4718 /// ProteinExtractor:ProteinSolverPeptideScoreThreshold: Only peptides with scores higher than that threshold are taken into account in ProteinSolver scoring for calculation of the ProteinExtractor meta score.
4720
4721 /// ProteinExtractor:ProteinSolverUniqueScore: In the final result each protein must have at least one peptide above this ProteinSolver score threshold in ProteinExtractor meta score calculation.
4723
4724 /// ProteinExtractor:ProteinSolverWeighting: Influence of ProteinSolver search engine in the process of merging the search engine specific protein lists into the global protein list of ProteinExtractor.
4726
4727 /// ProteinExtractor:UsePhenyx: Flag indicating to include Phenyx scoring for calculation of the ProteinExtractor meta score.
4729
4730 /// ProteinExtractor:PhenyxPeptideScoreThreshold: Only peptides with scores higher than that threshold are taken into account in Phenyx scoring for calculation of the ProteinExtractor meta score.
4732
4733 /// ProteinExtractor:PhenyxUniqueScore: In the final result each protein must have at least one peptide above this Phenyx score threshold in ProteinExtractor meta score calculation.
4735
4736 /// ProteinExtractor:PhenyxWeighting: Influence of Phenyx search engine in the process of merging the search engine specific protein lists into the global protein list of ProteinExtractor.
4738
4739 /// prot:FDR threshold: False-discovery rate threshold for proteins.
4741
4742 /// pep:FDR threshold: False-discovery rate threshold for peptides.
4744
4745 /// OMSSA e-value threshold: Threshold for OMSSA e-value for quality estimation.
4747
4748 /// decoy DB details: Details of decoy generation and database structure.
4750
4751 /// decoy DB generation algorithm: Name of algorithm used for decoy generation.
4753
4754 /// decoy DB type shuffle: Decoy type: Amino acids of protein sequences are used in a random order.
4756
4757 /// DB composition only decoy: Decoy database composition: database contains only decoy entries.
4759
4760 /// quality estimation with implicite decoy sequences: Decoy entries are generated during the search, not explicitly stored in a database (like Mascot Decoy).
4762
4763 /// acquisition software: Acquisition software.
4765
4766 /// analysis software: Analysis software.
4768
4769 /// data processing software: Data processing software.
4771
4772 /// spectrum generation information: Vocabularies describing the spectrum generation information.
4774
4775 /// file format: Format of data files.
4777
4778 /// unknown modification: This term should be given if the modification was unknown.
4780
4781 /// greylag: Greylag identification software.
4782 MS_greylag = 1001461,
4783
4784 /// PEFF format: The sequence database was stored in the PEFF (PSI enhanced FastA file) format.
4786
4787 /// Phenyx XML format: Phenyx open XML file format.
4789
4790 /// DTASelect format: DTASelect file format.
4792
4793 /// MS2 format: MS2 file format for MS2 spectral data.
4794 MS_MS2_format = 1001466,
4795
4796 /// taxonomy: NCBI TaxID: This term is used if a NCBI TaxID is specified, e.g. 9606 for Homo sapiens.
4798
4799 /// taxonomy: common name: This term is used if a common name is specified, e.g. human. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible.
4801
4802 /// taxonomy: scientific name: This term is used if a scientific name is specified, e.g. Homo sapiens. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible.
4804
4805 /// taxonomy: Swiss-Prot ID: This term is used if a swiss prot taxonomy id is specified, e.g. Human. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible.
4807
4808 /// peptide modification details: The children of this term can be used to describe modifications.
4810
4811 /// selected ion monitoring chromatogram: Chromatogram created by creating an array of the measurements of a selectively monitored ion at each time point.
4813
4814 /// SIM chromatogram (selected ion monitoring chromatogram): Chromatogram created by creating an array of the measurements of a selectively monitored ion at each time point.
4816
4817 /// selected reaction monitoring chromatogram: Chromatogram created by creating an array of the measurements of a selectively monitored reaction at each time point.
4819
4820 /// SRM chromatogram (selected reaction monitoring chromatogram): Chromatogram created by creating an array of the measurements of a selectively monitored reaction at each time point.
4822
4823 /// consecutive reaction monitoring chromatogram: Chromatogram created by creating an array of the measurements of a series of monitored reactions at each time point.
4825
4826 /// CRM chromatogram (consecutive reaction monitoring chromatogram): Chromatogram created by creating an array of the measurements of a series of monitored reactions at each time point.
4828
4829 /// OMSSA: Open Mass Spectrometry Search Algorithm was used to analyze the spectra.
4830 MS_OMSSA = 1001475,
4831
4832 /// X!Tandem: X!Tandem was used to analyze the spectra.
4833 MS_X_Tandem = 1001476,
4834
4835 /// SpectraST: SpectraST was used to analyze the spectra.
4836 MS_SpectraST = 1001477,
4837
4838 /// Mascot Parser: Mascot Parser was used to analyze the spectra.
4840
4841 /// null-terminated ASCII string: Sequence of zero or more non-zero ASCII characters terminated by a single null (0) byte.
4843
4844 /// SCIEX TOF/TOF nativeID format: Native format defined by jobRun=xsd:nonNegativeInteger spotLabel=xsd:string spectrum=xsd:nonNegativeInteger.
4846
4847 /// SCIEX TOF/TOF database: Applied Biosystems/MDS Analytical Technologies TOF/TOF instrument database.
4849
4850 /// 5800 TOF/TOF: SCIEX 5800 TOF-TOF Analyzer.
4852
4853 /// SCIEX TOF/TOF Series Explorer Software: SCIEX or Applied Biosystems software for TOF/TOF data acquisition and analysis.
4855
4856 /// intensity normalization: Normalization of data point intensities.
4858
4859 /// m/z calibration: Calibration of data point m/z positions.
4861
4862 /// data filtering: Filtering out part of the data.
4864
4865 /// ProteinExtractor: An algorithm for protein determination/assembly integrated into Bruker's ProteinScape.
4867
4868 /// Mascot Distiller: Mascot Distiller.
4870
4871 /// Mascot Integra: Mascot Integra.
4873
4874 /// Percolator: Percolator.
4875 MS_Percolator = 1001490,
4876
4877 /// percolator:Q value: Percolator:Q value.
4879
4880 /// percolator:score: Percolator:score.
4882
4883 /// percolator:PEP: Posterior error probability.
4885
4886 /// no threshold: In case no threshold was used.
4888
4889 /// ProteinScape:SearchResultId: The SearchResultId of this peptide as SearchResult in the ProteinScape database.
4891
4892 /// ProteinScape:SearchEventId: The SearchEventId of the SearchEvent in the ProteinScape database.
4894
4895 /// ProteinScape:ProfoundProbability: The Profound probability score stored by ProteinScape.
4897
4898 /// Profound:z value: The Profound z value.
4900
4901 /// Profound:Cluster: The Profound cluster score.
4903
4904 /// Profound:ClusterRank: The Profound cluster rank.
4906
4907 /// MSFit:Mowse score: The MSFit Mowse score.
4909
4910 /// Sonar:Score: The Sonar score.
4912
4913 /// ProteinScape:PFFSolverExp: The ProteinSolver exp value stored by ProteinScape.
4915
4916 /// ProteinScape:PFFSolverScore: The ProteinSolver score stored by ProteinScape.
4918
4919 /// ProteinScape:IntensityCoverage: The intensity coverage of the identified peaks in the spectrum calculated by ProteinScape.
4921
4922 /// ProteinScape:SequestMetaScore: The SEQUEST meta score calculated by ProteinScape from the original SEQUEST scores.
4924
4925 /// ProteinExtractor:Score: The score calculated by ProteinExtractor.
4927
4928 /// Agilent MassHunter nativeID format: Native format defined by scanId=xsd:nonNegativeInteger.
4930
4931 /// Agilent MassHunter format: A data file format found in an Agilent MassHunter directory which contains raw data acquired by an Agilent mass spectrometer.
4933
4934 /// TSQ Vantage: TSQ Vantage.
4936
4937 /// Sequence database filter types: Filter types which are used to filter a sequence database.
4939
4940 /// Sequence database filters: Sequence database filters which actually can contains values, e.g. to limit PI value of the sequences used to search.
4942
4943 /// DB sequence filter pattern: DB sequence filter pattern.
4945
4946 /// DB accession filter string: DB accession filter string.
4948
4949 /// frag: c ion - H2O: Fragmentation information, type of product: c ion without water.
4951
4952 /// frag: c ion - NH3: Fragmentation information, type of product: c ion without ammonia.
4954
4955 /// frag: z ion - H2O: Fragmentation information, type of product: z ion without water.
4957
4958 /// frag: z ion - NH3: Fragmentation information, type of product: z ion without ammonia.
4960
4961 /// frag: x ion - H2O: Fragmentation information, type of product: x ion without water.
4963
4964 /// frag: x ion - NH3: Fragmentation information, type of product: x ion without ammonia.
4966
4967 /// frag: precursor ion - H2O: Fragmentation information, type of product: precursor ion without water.
4969
4970 /// frag: precursor ion - NH3: Fragmentation information, type of product: precursor ion without ammonia.
4972
4973 /// frag: precursor ion: Fragmentation information, type of product: precursor ion.
4975
4976 /// fragment neutral loss: This term can describe a neutral loss m/z value that is lost from an ion.
4978
4979 /// precursor neutral loss: This term can describe a neutral loss m/z value that is lost from an ion.
4981
4982 /// spectrum from database integer nativeID format: Native format defined by databasekey=xsd:long.
4984
4985 /// Proteinscape spectra: Spectra from Bruker/Protagen Proteinscape database.
4987
4988 /// Mascot query number: Native format defined by query=xsd:nonNegativeInteger.
4990
4991 /// spectra data details: Child-terms contain information to map the results back to spectra.
4993
4994 /// mzML unique identifier: Native format defined by mzMLid=xsd:IDREF.
4996
4997 /// spectrum from ProteinScape database nativeID format: Native format defined by databasekey=xsd:long.
4999
5000 /// spectrum from database string nativeID format: Native format defined by databasekey=xsd:string.
5002
5003 /// Bruker Daltonics esquire series: Bruker Daltonics' esquire series.
5005
5006 /// Bruker Daltonics flex series: Bruker Daltonics' flex series.
5008
5009 /// Bruker Daltonics BioTOF series: Bruker Daltonics' BioTOF series.
5011
5012 /// Bruker Daltonics micrOTOF series: Bruker Daltonics' micrOTOF series.
5014
5015 /// BioTOF: Bruker Daltonics' BioTOF: ESI TOF.
5016 MS_BioTOF = 1001537,
5017
5018 /// BioTOF III: Bruker Daltonics' BioTOF III: ESI TOF.
5019 MS_BioTOF_III = 1001538,
5020
5021 /// UltroTOF-Q: Bruker Daltonics' UltroTOF-Q: ESI Q-TOF (MALDI optional).
5022 MS_UltroTOF_Q = 1001539,
5023
5024 /// micrOTOF II: Bruker Daltonics' micrOTOF II: ESI TOF, Nanospray, APCI, APPI.
5026
5027 /// maXis: Bruker Daltonics' maXis: ESI Q-TOF, Nanospray, APCI, APPI.
5028 MS_maXis = 1001541,
5029
5030 /// amaZon ETD: Bruker Daltonics' amaZon ETD: ESI quadrupole ion trap, Nanospray, APCI, APPI, ETD, PTR.
5031 MS_amaZon_ETD = 1001542,
5032
5033 /// microflex LRF: Bruker Daltonics' microflex LRF: MALDI TOF.
5035
5036 /// ultrafleXtreme: Bruker Daltonics' ultrafleXtreme: MALDI TOF.
5038
5039 /// Bruker Daltonics amaZon series: Bruker Daltonics' amaZon series.
5041
5042 /// amaZon X: Bruker Daltonics' amaZon X: ESI quadrupole ion trap, APCI, APPI, ETD, PTR.
5043 MS_amaZon_X = 1001546,
5044
5045 /// Bruker Daltonics maXis series: Bruker Daltonics' maXis series.
5047
5048 /// Bruker Daltonics solarix series: Bruker Daltonics' solarix: ESI quadrupole ion trap, APCI, APPI, ETD, PTR.
5050
5051 /// solariX: Bruker Daltonics' solariX: ESI, MALDI, Qh-FT_ICR.
5052 MS_solariX = 1001549,
5053
5054 /// microflex II: Bruker Daltonics' microflex II: MALDI TOF.
5056
5057 /// autoflex II TOF/TOF: Bruker Daltonics' autoflex II TOF/TOF: MALDI TOF.
5059
5060 /// autoflex III TOF/TOF smartbeam: Bruker Daltonics' autoflex III TOF/TOF smartbeam: MALDI TOF.
5062
5063 /// autoflex: Bruker Daltonics' autoflex: MALDI TOF.
5064 MS_autoflex = 1001555,
5065
5066 /// Bruker Daltonics apex series: Bruker Daltonics' apex series.
5068
5069 /// Shimadzu Corporation software: Shimadzu Corporation software.
5071
5072 /// MALDI Solutions: Shimadzu Biotech software for data acquisition, processing, and analysis.
5074
5075 /// SCIEX TOF/TOF T2D nativeID format: Native format defined by file=xsd:IDREF.
5077
5078 /// SCIEX TOF/TOF T2D format: Applied Biosystems/MDS Analytical Technologies TOF/TOF instrument export format.
5080
5081 /// Scaffold: Scaffold analysis software.
5082 MS_Scaffold = 1001561,
5083
5084 /// Scaffold nativeID format: Scaffold native ID format.
5086
5087 /// SEQUEST SQT format: Source file for this mzIdentML was in SEQUEST SQT format.
5089
5090 /// Discoverer MSF format: Source file for this mzIdentML was in Thermo Scientific Discoverer MSF format.
5092
5093 /// IdentityE XML format: Source file for this mzIdentML was in Waters IdentityE XML format.
5095
5096 /// ProteinLynx XML format: Source file for this mzIdentML was in Waters ProteinLynx XML format.
5098
5099 /// SpectrumMill directories: Source file for this mzIdentML was in Agilent SpectrumMill directory format.
5101
5102 /// Scaffold:Peptide Probability: Scaffold peptide probability score.
5104
5105 /// IdentityE Score: Waters IdentityE peptide score.
5107
5108 /// ProteinLynx:Log Likelihood: ProteinLynx log likelihood score.
5110
5111 /// ProteinLynx:Ladder Score: Waters ProteinLynx Ladder score.
5113
5114 /// SpectrumMill:Score: Spectrum mill peptide score.
5116
5117 /// SpectrumMill:SPI: SpectrumMill SPI score (%).
5119
5120 /// report only spectra assigned to identified proteins: Flag indicating to report only the spectra assigned to identified proteins.
5122
5123 /// Scaffold: Minimum Peptide Count: Minimum number of peptides a protein must have to be accepted.
5125
5126 /// Scaffold: Minimum Protein Probability: Minimum protein probability a protein must have to be accepted.
5128
5129 /// Scaffold: Minimum Peptide Probability: Minimum probability a peptide must have to be accepted for protein scoring.
5131
5132 /// minimum number of enzymatic termini: Minimum number of enzymatic termini a peptide must have to be accepted.
5134
5135 /// Scaffold:Protein Probability: Scaffold protein probability score.
5137
5138 /// SpectrumMill:Discriminant Score: Discriminant score from Agilent SpectrumMill software.
5140
5141 /// FAIMS compensation voltage: The DC potential applied to the asymmetric waveform in FAIMS that compensates for the difference between high and low field mobility of an ion.
5143
5144 /// FAIMS CV (FAIMS compensation voltage): The DC potential applied to the asymmetric waveform in FAIMS that compensates for the difference between high and low field mobility of an ion.
5146
5147 /// XCMS: Bioconductor package XCMS for preprocessing high-throughput, untargeted analyte profiling data.
5148 MS_XCMS = 1001582,
5149
5150 /// MaxQuant: MaxQuant is a quantitative proteomics software package designed for analyzing large mass spectrometric data sets. It is specifically aimed at high resolution MS data.
5151 MS_MaxQuant = 1001583,
5152
5153 /// combined pmf + ms-ms search: Search that includes data from Peptide Mass Fingerprint (PMF) and MS2 (aka Peptide Fragment Fingerprint - PFF).
5155
5156 /// MyriMatch: Tabb Lab software for directly comparing peptides in a database to tandem mass spectra.
5157 MS_MyriMatch = 1001585,
5158
5159 /// DirecTag: Tabb Lab software for generating sequence tags from tandem mass spectra.
5160 MS_DirecTag = 1001586,
5161
5162 /// TagRecon: Tabb Lab software for reconciling sequence tags to a protein database.
5163 MS_TagRecon = 1001587,
5164
5165 /// Pepitome: Tabb Lab software for spectral library searches on tandem mass spectra.
5166 MS_Pepitome = 1001588,
5167
5168 /// MyriMatch:MVH: Using the multivariate hypergeometric distribution and a peak list divided into several intensity classes, this score is the negative natural log probability that the predicted peaks matched to experimental peaks by random chance.
5170
5171 /// Pepitome:MVH (MyriMatch:MVH): Using the multivariate hypergeometric distribution and a peak list divided into several intensity classes, this score is the negative natural log probability that the predicted peaks matched to experimental peaks by random chance.
5173
5174 /// TagRecon:MVH (MyriMatch:MVH): Using the multivariate hypergeometric distribution and a peak list divided into several intensity classes, this score is the negative natural log probability that the predicted peaks matched to experimental peaks by random chance.
5176
5177 /// MyriMatch:mzFidelity: The negative natural log probability that predicted peaks match to experimental peaks by random chance by scoring the m/z delta of the matches in a multinomial distribution.
5179
5180 /// Pepitome:mzFidelity (MyriMatch:mzFidelity): The negative natural log probability that predicted peaks match to experimental peaks by random chance by scoring the m/z delta of the matches in a multinomial distribution.
5182
5183 /// TagRecon:mzFidelity (MyriMatch:mzFidelity): The negative natural log probability that predicted peaks match to experimental peaks by random chance by scoring the m/z delta of the matches in a multinomial distribution.
5185
5186 /// anchor protein: A representative protein selected from a set of sequence same-set or spectrum same-set proteins.
5188
5189 /// family member protein: A protein with significant homology to another protein, but some distinguishing peptide matches.
5191
5192 /// group member with undefined relationship OR ortholog protein: TO ENDETAIL: a really generic relationship OR ortholog protein.
5194
5195 /// sequence same-set protein: A protein which is indistinguishable or equivalent to another protein, having matches to an identical set of peptide sequences.
5197
5198 /// spectrum same-set protein: A protein which is indistinguishable or equivalent to another protein, having matches to a set of peptide sequences that cannot be distinguished using the evidence in the mass spectra.
5200
5201 /// sequence sub-set protein: A protein with a sub-set of the peptide sequence matches for another protein, and no distinguishing peptide matches.
5203
5204 /// spectrum sub-set protein: A protein with a sub-set of the matched spectra for another protein, where the matches cannot be distinguished using the evidence in the mass spectra, and no distinguishing peptide matches.
5206
5207 /// sequence subsumable protein: A sequence same-set or sequence sub-set protein where the matches are distributed across two or more proteins.
5209
5210 /// spectrum subsumable protein: A spectrum same-set or spectrum sub-set protein where the matches are distributed across two or more proteins.
5212
5213 /// protein inference confidence category: Confidence category of inferred protein (conclusive, non conclusive, ambiguous group or indistinguishable).
5215
5216 /// ProteomeDiscoverer:Spectrum Files:Raw File names: Name and location of the .raw file or files.
5218
5219 /// ProteomeDiscoverer:SRF File Selector:SRF File Path: Path and name of the .srf (SEQUEST Result Format) file.
5221
5222 /// ProteomeDiscoverer:Spectrum Selector:Ionization Source: Ionization source (electro-, nano-, thermospray, electron impact, APCI, MALDI, FAB etc).
5224
5225 /// ProteomeDiscoverer:Activation Type: Fragmentation method used (CID, MPD, ECD, PQD, ETD, HCD, Any).
5227
5228 /// ProteomeDiscoverer:Spectrum Selector:Lower RT Limit: Lower retention-time limit.
5230
5231 /// ProteomeDiscoverer:Mass Analyzer: Type of mass spectrometer used (ITMS, FTMS, TOFMS, SQMS, TQMS, SectorMS).
5233
5234 /// ProteomeDiscoverer:Max Precursor Mass: Maximum mass limit of a singly charged precursor ion.
5236
5237 /// ProteomeDiscoverer:Min Precursor Mass: Minimum mass limit of a singly charged precursor ion.
5239
5240 /// ProteomeDiscoverer:Spectrum Selector:Minimum Peak Count: Minimum number of peaks in a tandem mass spectrum that is allowed to pass the filter and to be subjected to further processing in the workflow.
5242
5243 /// ProteomeDiscoverer:MS Order: Level of the mass spectrum (MS2 ... MS10).
5245
5246 /// ProteomeDiscoverer:Polarity Mode: Polarity mode (positive or negative).
5248
5249 /// ProteomeDiscoverer:Spectrum Selector:Precursor Selection: Determines which precursor mass to use for a given MSn scan. This option applies only to higher-order MSn scans (n >= 3).
5251
5252 /// ProteomeDiscoverer:SN Threshold: Signal-to-Noise ratio below which peaks are removed.
5254
5255 /// ProteomeDiscoverer:Scan Type: Scan type for the precursor ion (full, Single Ion Monitoring (SIM), Single Reaction Monitoring (SRM)).
5257
5258 /// ProteomeDiscoverer:Spectrum Selector:Total Intensity Threshold: Used to filter out tandem mass spectra that have a total intensity current(sum of the intensities of all peaks in a spectrum) below the specified value.
5260
5261 /// ProteomeDiscoverer:Spectrum Selector:Unrecognized Activation Type Replacements: Specifies the fragmentation method to use in the search algorithm if it is not included in the scan header.
5263
5264 /// ProteomeDiscoverer:Spectrum Selector:Unrecognized Charge Replacements: Specifies the charge state of the precursor ions, if it is not defined in the scan header.
5266
5267 /// ProteomeDiscoverer:Spectrum Selector:Unrecognized Mass Analyzer Replacements: Specifies the mass spectrometer to use to produce the spectra, if it is not included in the scan header.
5269
5270 /// ProteomeDiscoverer:Spectrum Selector:Unrecognized MS Order Replacements: Specifies the MS scan order used to produce the product spectra, if it is not included in the scan header.
5272
5273 /// ProteomeDiscoverer:Spectrum Selector:Unrecognized Polarity Replacements: Specifies the polarity of the ions monitored if it is not included in the scan header.
5275
5276 /// ProteomeDiscoverer:Spectrum Selector:Upper RT Limit: Upper retention-time limit.
5278
5279 /// ProteomeDiscoverer:Non-Fragment Filter:Mass Window Offset: Specifies the size of the mass-to-charge ratio (m/z) window in daltons used to remove precursors.
5281
5282 /// ProteomeDiscoverer:Non-Fragment Filter:Maximum Neutral Loss Mass: Maximum allowed mass of a neutral loss.
5284
5285 /// ProteomeDiscoverer:Non-Fragment Filter:Remove Charge Reduced Precursor: Determines whether the charge-reduced precursor peaks found in an ETD or ECD spectrum are removed.
5287
5288 /// ProteomeDiscoverer:Non-Fragment Filter:Remove Neutral Loss Peaks: Determines whether neutral loss peaks are removed from ETD and ECD spectra.
5290
5291 /// ProteomeDiscoverer:Non-Fragment Filter:Remove Only Known Masses: Determines whether overtone peaks are removed from LTQ FT or LTQ FT Ultra ECD spectra.
5293
5294 /// ProteomeDiscoverer:Non-Fragment Filter:Remove Precursor Overtones: Determines whether precursor overtone peaks in the spectrum are removed from the input spectrum.
5296
5297 /// ProteomeDiscoverer:Non-Fragment Filter:Remove Precursor Peak: Determines whether precursor artifact peaks from the MS2 input spectra are removed.
5299
5300 /// ProteomeDiscoverer:Spectrum Grouper:Allow Mass Analyzer Mismatch: Determines whether the fragment spectrum for scans with the same precursor mass is grouped, regardless of mass analyzer and activation type.
5302
5303 /// ProteomeDiscoverer:Spectrum Grouper:Allow MS Order Mismatch: Determines whether spectra from different MS order scans can be grouped together.
5305
5306 /// ProteomeDiscoverer:Spectrum Grouper:Max RT Difference: Chromatographic window where precursors to be grouped must reside to be considered the same species.
5308
5309 /// ProteomeDiscoverer:Spectrum Grouper:Precursor Mass Criterion: Groups spectra measured within the given mass and retention-time tolerances into a single spectrum for analysis.
5311
5312 /// ProteomeDiscoverer:Xtract:Highest Charge: Highest charge state that is allowed for the deconvolution of multiply charged data.
5314
5315 /// ProteomeDiscoverer:Xtract:Highest MZ: Highest mass-to-charge (mz) value for spectral peaks in the measured spectrum that are considered for Xtract.
5317
5318 /// ProteomeDiscoverer:Xtract:Lowest Charge: Lowest charge state that is allowed for the deconvolution of multiply charged data.
5320
5321 /// ProteomeDiscoverer:Xtract:Lowest MZ: Lowest mass-to-charge (mz) value for spectral peaks in the measured spectrum that are considered for Xtract.
5323
5324 /// ProteomeDiscoverer:Xtract:Monoisotopic Mass Only: Determines whether the isotopic pattern, i.e. all isotopes of a mass are removed from the spectrum.
5326
5327 /// ProteomeDiscoverer:Xtract:Overlapping Remainder: Fraction of the more abundant peak that an overlapping multiplet must exceed in order to be processed (deconvoluted).
5329
5330 /// ProteomeDiscoverer:Xtract:Required Fitting Accuracy: Accuracy required for a pattern fit to be considered valid.
5332
5333 /// ProteomeDiscoverer:Xtract:Resolution At 400: Resolution at mass 400.
5335
5336 /// ProteomeDiscoverer:Lowest Charge State: Minimum charge state below which peptides are filtered out.
5338
5339 /// ProteomeDiscoverer:Highest Charge State: Maximum charge above which peptides are filtered out.
5341
5342 /// ProteomeDiscoverer:Spectrum Score Filter:Let Pass Above Scores: Determines whether spectra with scores above the threshold score are retained rather than filtered out.
5344
5345 /// ProteomeDiscoverer:Dynamic Modification: Determine dynamic post-translational modifications (PTMs).
5347
5348 /// ProteomeDiscoverer:Static Modification: Static Modification to all occurrences of a named amino acid.
5350
5351 /// ProteomeDiscoverer:Mascot:Decoy Search: Determines whether the Proteome Discoverer application searches an additional decoy database.
5353
5354 /// ProteomeDiscoverer:Mascot:Error tolerant Search: Determines whether to search error-tolerant.
5356
5357 /// ProteomeDiscoverer:Mascot:Max MGF File Size: Maximum size of the .mgf (Mascot Generic Format) file in MByte.
5359
5360 /// ProteomeDiscoverer:Mascot:Mascot Server URL: URL (Uniform resource Locator) of the Mascot server.
5362
5363 /// ProteomeDiscoverer:Mascot:Number of attempts to submit the search: Number of attempts to submit the Mascot search.
5365
5366 /// ProteomeDiscoverer:Mascot:X Static Modification: Number of attempts to submit the Mascot search.
5368
5369 /// ProteomeDiscoverer:Mascot:User Name: Name of the user submitting the Mascot search.
5371
5372 /// ProteomeDiscoverer:Mascot:Time interval between attempts to submit a search: Time interval between attempts to submit a search in seconds.
5374
5375 /// ProteomeDiscoverer:Enzyme Name: Specifies the enzyme reagent used for protein digestion.
5377
5378 /// ProteomeDiscoverer:Fragment Mass Tolerance: Mass tolerance used for matching fragment peaks in Da or mmu.
5380
5381 /// Mascot:Instrument: Type of instrument used to acquire the data in the raw file.
5383
5384 /// ProteomeDiscoverer:Maximum Missed Cleavage Sites: Maximum number of missed cleavage sites to consider during the digest.
5386
5387 /// ProteomeDiscoverer:Mascot:Peptide CutOff Score: Minimum score in the IonScore column that each peptide must exceed in order to be reported.
5389
5390 /// ProteomeDiscoverer:Precursor Mass Tolerance: Mass window for which precursor ions are considered to be the same species.
5392
5393 /// ProteomeDiscoverer:Mascot:Protein CutOff Score: Minimum protein score in the IonScore column that each protein must exceed in order to be reported.
5395
5396 /// ProteomeDiscoverer:Protein Database: Database to use in the search (configured on the Mascot server).
5398
5399 /// ProteomeDiscoverer:Mascot:Protein Relevance Factor: Specifies a factor that is used in calculating a threshold that determines whether a protein appears in the results report.
5401
5402 /// ProteomeDiscoverer:Target FDR Relaxed: Specifies the relaxed target false discovery rate (FDR, 0.0 - 1.0) for peptide hits with moderate confidence.
5404
5405 /// ProteomeDiscoverer:Target FDR Strict: Specifies the strict target false discovery rate (FDR, 0.0 - 1.0) for peptide hits with high confidence.
5407
5408 /// ProteomeDiscoverer:Mascot:Taxonomy: Limits searches to entries from a particular species or group of species.
5410
5411 /// ProteomeDiscoverer:Use Average Precursor Mass: Use average mass for the precursor.
5413
5414 /// Mascot:use MudPIT scoring: Determines whether to use MudPIT or normal scoring.
5416
5417 /// ProteomeDiscoverer:Absolute XCorr Threshold: Minimum cross-correlation threshold that determines whether peptides in an .srf file are imported.
5419
5420 /// ProteomeDiscoverer:SEQUEST:Calculate Probability Score: Determines whether to calculate a probability score for every peptide match.
5422
5423 /// ProteomeDiscoverer:SEQUEST:CTerminal Modification: Dynamic C-terminal modification that is used during the search.
5425
5426 /// ProteomeDiscoverer:SEQUEST:Fragment Ion Cutoff Percentage: Percentage of the theoretical ions that must be found in order for a peptide to be scored and retained.
5428
5429 /// ProteomeDiscoverer:SEQUEST:Max Identical Modifications Per Peptide: Maximum number of identical modifications that a single peptide can have.
5431
5432 /// ProteomeDiscoverer:Max Modifications Per Peptide: Maximum number of different modifications that a peptide can have, e.g. because of steric hindrance.
5434
5435 /// ProteomeDiscoverer:SEQUEST:Maximum Peptides Considered: Maximum number of peptides that are searched and scored per spectrum.
5437
5438 /// ProteomeDiscoverer:Maximum Peptides Output: Maximum number of peptide matches reported per spectrum.
5440
5441 /// ProteomeDiscoverer:Maximum Protein References Per Peptide: Maximum number of proteins that a single identified peptide can be associated with during protein assembly.
5443
5444 /// ProteomeDiscoverer:SEQUEST:NTerminal Modification: Dynamic N-terminal modification that is used during the search.
5446
5447 /// ProteomeDiscoverer:Peptide CTerminus: Static modification for the C terminal of the peptide used during the search.
5449
5450 /// ProteomeDiscoverer:Peptide NTerminus: Static modification for the N terminal of the peptide used during the search.
5452
5453 /// ProteomeDiscoverer:SEQUEST:Peptide Relevance Factor: Specifies a factor to apply to the protein score.
5455
5456 /// ProteomeDiscoverer:Protein Relevance Threshold: Specifies a peptide threshold that determines whether the protein that it is a part of is scored and retained in the report.
5458
5459 /// ProteomeDiscoverer:Search Against Decoy Database: Determines whether the Proteome Discoverer application searches against a decoy database.
5461
5462 /// ProteomeDiscoverer:SEQUEST:Use Average Fragment Masses: Use average masses for the fragments.
5464
5465 /// ProteomeDiscoverer:Use Neutral Loss a Ions: Determines whether a ions with neutral loss are used for spectrum matching.
5467
5468 /// ProteomeDiscoverer:Use Neutral Loss b Ions: Determines whether b ions with neutral loss are used for spectrum matching.
5470
5471 /// ProteomeDiscoverer:Use Neutral Loss y Ions: Determines whether y ions with neutral loss are used for spectrum matching.
5473
5474 /// ProteomeDiscoverer:Use Neutral Loss z Ions: Determines whether z ions with neutral loss are used for spectrum matching.
5476
5477 /// ProteomeDiscoverer:SEQUEST:Weight of a Ions: Uses a ions for spectrum matching with this relative factor.
5479
5480 /// ProteomeDiscoverer:SEQUEST:Weight of b Ions: Uses b ions for spectrum matching with this relative factor.
5482
5483 /// ProteomeDiscoverer:SEQUEST:Weight of c Ions: Uses c ions for spectrum matching with this relative factor.
5485
5486 /// ProteomeDiscoverer:SEQUEST:Weight of d Ions: Uses c ions for spectrum matching with this relative factor.
5488
5489 /// ProteomeDiscoverer:SEQUEST:Weight of v Ions: Uses c ions for spectrum matching with this relative factor.
5491
5492 /// ProteomeDiscoverer:SEQUEST:Weight of w Ions: Uses c ions for spectrum matching with this relative factor.
5494
5495 /// ProteomeDiscoverer:SEQUEST:Weight of x Ions: Uses x ions for spectrum matching with this relative factor.
5497
5498 /// ProteomeDiscoverer:SEQUEST:Weight of y Ions: Uses y ions for spectrum matching with this relative factor.
5500
5501 /// ProteomeDiscoverer:SEQUEST:Weight of z Ions: Uses z ions for spectrum matching with this relative factor.
5503
5504 /// ProteomeDiscoverer:ZCore:Protein Score Cutoff: Sets a minimum protein score that each protein must exceed in order to be reported.
5506
5507 /// ProteomeDiscoverer:Reporter Ions Quantizer:Integration Method: Specifies which peak to select if more than one peak is found inside the integration window.
5509
5510 /// ProteomeDiscoverer:Reporter Ions Quantizer:Integration Window Tolerance: Specifies the mass-to-charge window that enables one to look for the reporter peaks.
5512
5513 /// ProteomeDiscoverer:Reporter Ions Quantizer:Quantitation Method: Quantitation method for isobarically labeled quantitation.
5515
5516 /// ProteomeDiscoverer:Spectrum Exporter:Export Format: Format of the exported spectra (dta, mgf or mzData).
5518
5519 /// ProteomeDiscoverer:Spectrum Exporter:File name: Name of the output file that contains the exported data.
5521
5522 /// ProteomeDiscoverer:Search Modifications Only For Identified Proteins: Influences the modifications search.
5524
5525 /// ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge1: Standard high confidence XCorr parameter for charge = 1.
5527
5528 /// ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge2: Standard high confidence XCorr parameter for charge = 2.
5530
5531 /// ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge3: Standard high confidence XCorr parameter for charge = 3.
5533
5534 /// ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge4: Standard high confidence XCorr parameter for charge >= 4.
5536
5537 /// ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge1: Standard medium confidence XCorr parameter for charge = 1.
5539
5540 /// ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge2: Standard medium confidence XCorr parameter for charge = 2.
5542
5543 /// ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge3: Standard medium confidence XCorr parameter for charge = 3.
5545
5546 /// ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge4: Standard medium confidence XCorr parameter for charge >= 4.
5548
5549 /// ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge1: FT high confidence XCorr parameter for charge = 1.
5551
5552 /// ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge2: FT high confidence XCorr parameter for charge = 2.
5554
5555 /// ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge3: FT high confidence XCorr parameter for charge = 3.
5557
5558 /// ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge4: FT high confidence XCorr parameter for charge >= 4.
5560
5561 /// ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge1: FT medium confidence XCorr parameter for charge = 1.
5563
5564 /// ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge2: FT medium confidence XCorr parameter for charge = 2.
5566
5567 /// ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge3: FT medium confidence XCorr parameter for charge = 3.
5569
5570 /// ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge4: FT medium confidence XCorr parameter for charge >= 4.
5572
5573 /// ProteomeDiscoverer:1. Dynamic Modification: ProteomeDiscoverer's 1st dynamic post-translational modification (PTM) input parameter.
5575
5576 /// ProteomeDiscoverer:2. Dynamic Modification: ProteomeDiscoverer's 2nd dynamic post-translational modification (PTM) input parameter.
5578
5579 /// ProteomeDiscoverer:3. Dynamic Modification: ProteomeDiscoverer's 3rd dynamic post-translational modification (PTM) input parameter.
5581
5582 /// ProteomeDiscoverer:4. Dynamic Modification: ProteomeDiscoverer's 4th dynamic post-translational modification (PTM) input parameter.
5584
5585 /// ProteomeDiscoverer:Static Modification for X: Static Modification for X.
5587
5588 /// ProteomeDiscoverer:Initial minimal peptide probability: Minimal initial peptide probability to contribute to analysis.
5590
5591 /// ProteomeDiscoverer:Minimal peptide probability: Minimum adjusted peptide probability contributing to protein probability.
5593
5594 /// ProteomeDiscoverer:Minimal peptide weight: Minimum peptide weight contributing to protein probability.
5596
5597 /// ProteomeDiscoverer:Number of input1 spectra: Number of spectra from 1+ precursor ions.
5599
5600 /// ProteomeDiscoverer:Number of input2 spectra: Number of spectra from 2+ precursor ions.
5602
5603 /// ProteomeDiscoverer:Number of input3 spectra: Number of spectra from 3+ precursor ions.
5605
5606 /// ProteomeDiscoverer:Number of input4 spectra: Number of spectra from 4+ precursor ions.
5608
5609 /// ProteomeDiscoverer:Number of input5 spectra: Number of spectra from 5+ precursor ions.
5611
5612 /// ProteomeDiscoverer:Number of predicted correct proteins: Total number of predicted correct protein ids (sum of probabilities).
5614
5615 /// ProteomeDiscoverer:Organism: Sample organism (used for annotation purposes).
5617
5618 /// ProteomeDiscoverer:Reference Database: Full path database name.
5620
5621 /// ProteomeDiscoverer:Residue substitution list: Residues considered equivalent when comparing peptides.
5623
5624 /// ProteomeDiscoverer:Source file extension: File type (if not pepXML).
5626
5627 /// ProteomeDiscoverer:Source Files: Input pepXML files.
5629
5630 /// ProteomeDiscoverer:Source Files old: Input pepXML files (old).
5632
5633 /// ProteomeDiscoverer:WinCyg reference database: Windows full path for database.
5635
5636 /// ProteomeDiscoverer:WinCyg source files: Windows pepXML file names.
5638
5639 /// LTQ Orbitrap Velos: Finnigan LTQ Orbitrap Velos MS.
5641
5642 /// ProteomeDiscoverer:Mascot:Weight of A Ions: Determines if to use A ions for spectrum matching.
5644
5645 /// ProteomeDiscoverer:Mascot:Weight of B Ions: Determines if to use B ions for spectrum matching.
5647
5648 /// ProteomeDiscoverer:Mascot:Weight of C Ions: Determines if to use C ions for spectrum matching.
5650
5651 /// ProteomeDiscoverer:Mascot:Weight of D Ions: Determines if to use D ions for spectrum matching.
5653
5654 /// ProteomeDiscoverer:Mascot:Weight of V Ions: Determines if to use V ions for spectrum matching.
5656
5657 /// ProteomeDiscoverer:Mascot:Weight of W Ions: Determines if to use W ions for spectrum matching.
5659
5660 /// ProteomeDiscoverer:Mascot:Weight of X Ions: Determines if to use X ions for spectrum matching.
5662
5663 /// ProteomeDiscoverer:Mascot:Weight of Y Ions: Determines if to use Y ions for spectrum matching.
5665
5666 /// ProteomeDiscoverer:Mascot:Weight of Z Ions: Determines if to use z ions for spectrum matching.
5668
5669 /// ProteomeDiscoverer:Spectrum Selector:Use New Precursor Reevaluation: Determines if to use precursor reevaluation.
5671
5672 /// ProteomeDiscoverer:Spectrum Selector:SN Threshold FTonly: Signal-to-Noise ratio below which peaks are removed (in FT mode only).
5674
5675 /// ProteomeDiscoverer:Mascot:Please Do not Touch this: Unknown Mascot parameter which ProteomeDiscoverer uses for mascot searches.
5677
5678 /// contact phone number: Phone number of the contact person or organization.
5680
5681 /// contact fax number: Fax number for the contact person or organization.
5683
5684 /// contact toll-free phone number: Toll-free phone number of the contact person or organization.
5686
5687 /// Mascot:SigThresholdType: Significance threshold type used in Mascot reporting (either 'identity' or 'homology').
5689
5690 /// Mascot:ProteinGrouping: Strategy used by Mascot to group proteins with same peptide matches (one of 'none', 'Occam's razor' or 'family clustering').
5692
5693 /// Percolator:features: List of Percolator features that were used in processing the peptide matches. Typical Percolator features are 'retentionTime', 'dM', 'mScore', 'lgDScore', 'mrCalc', 'charge' and 'dMppm'.
5695
5696 /// ACQUITY UPLC: Waters LC-system ACQUITY UPLC.
5698
5699 /// ACQUITY UPLC H-Class: Waters LC-system ACQUITY UPLC H-Class.
5701
5702 /// ACQUITY UPLC H-Class Bio: Waters LC-system ACQUITY UPLC H-Class Bio.
5704
5705 /// ACQUITY UPLC I-Class: Waters LC-system ACQUITY UPLC I-Class.
5707
5708 /// ACQUITY UPLC Systems with 2D Technology: Waters LC-system ACQUITY UPLC Systems with 2D Technology.
5710
5711 /// nanoACQUITY UPLC: Waters LC-system nanoACQUITY UPLC.
5713
5714 /// nanoACQUITY UPLC System with 1D Technology: Waters LC-system nanoACQUITY UPLC System with 1D Technology.
5716
5717 /// nanoACQUITY UPLC with HDX Technology: Waters LC-system nanoACQUITY UPLC with HDX Technology.
5719
5720 /// TRIZAIC UPLC nanoTile: Waters LC-system TRIZAIC UPLC nanoTile.
5722
5723 /// GCT Premier: Waters oa-ToF based GCT Premier.
5725
5726 /// MALDI Synapt G2 HDMS: Waters oa-ToF based MALDI Synapt G2 HDMS.
5728
5729 /// MALDI Synapt G2 MS: Waters oa-ToF based MALDI Synapt G2 MS.
5731
5732 /// MALDI Synapt G2-S HDMS: Waters oa-ToF based MALDI Synapt G2 MS.
5734
5735 /// MALDI Synapt G2-S MS: Waters oa-ToF based MALDI Synapt G2-S MS.
5737
5738 /// MALDI Synapt HDMS: Waters oa-ToF based MALDI Synapt HDMS.
5740
5741 /// MALDI Synapt MS: Waters oa-ToF based MALDI Synapt MS.
5743
5744 /// Synapt G2 HDMS: Waters oa-ToF based Synapt G2 HDMS.
5746
5747 /// Synapt G2 MS: Waters oa-ToF based Synapt G2 MS.
5749
5750 /// Synapt G2-S HDMS: Waters oa-ToF based Synapt G2-S HDMS.
5752
5753 /// Synapt G2-S MS: Waters oa-ToF based Synapt G2-S MS.
5755
5756 /// Synapt HDMS: Waters oa-ToF based Synapt HDMS.
5758
5759 /// Synapt MS: Waters oa-ToF based Synapt MS.
5760 MS_Synapt_MS = 1001782,
5761
5762 /// Xevo G2 Q-Tof: Waters oa-ToF based Xevo G2 Q-Tof.
5764
5765 /// Xevo G2 Tof: Waters oa-ToF based Xevo G2 Tof.
5767
5768 /// Xevo Q-Tof: Waters oa-ToF based Xevo Q-Tof.
5769 MS_Xevo_Q_Tof = 1001785,
5770
5771 /// 3100: Waters quadrupole based 3100.
5772 MS_3100 = 1001786,
5773
5774 /// Acquity SQD: Waters quadrupole based Acquity SQD.
5776
5777 /// Acquity TQD: Waters quadrupole based Acquity TQD.
5779
5780 /// Quattro micro GC: Waters (triple) quadrupole based Quattro micro GC.
5782
5783 /// Xevo TQ MS: Waters quadrupole based Xevo TQ MS.
5784 MS_Xevo_TQ_MS = 1001790,
5785
5786 /// Xevo TQD: Waters quadrupole based Xevo TQD.
5787 MS_Xevo_TQD = 1001791,
5788
5789 /// Xevo TQ-S: Waters quadrupole based Xevo TQ-S.
5790 MS_Xevo_TQ_S = 1001792,
5791
5792 /// Mascot:PreferredTaxonomy: NCBI TaxID taxonomy ID to prefer when two or more proteins match the same set of peptides or when protein entry in database represents multiple sequences.
5794
5795 /// Empower: Waters Empower software for liquid chromatography and mass spectrometry acquisition.
5796 MS_Empower = 1001795,
5797
5798 /// UNIFY: Waters UNIFY software for liquid chromatography and mass spectrometry acquisition.
5799 MS_UNIFY = 1001796,
5800
5801 /// travelling wave ion mobility mass spectrometer: An ion mobility mass spectrometry technique based on the superimposition of travelling voltage waves on a radially-confining RF voltage in a gas-filled, stacked-ring ion guide.
5803
5804 /// TWIMS (travelling wave ion mobility mass spectrometer): An ion mobility mass spectrometry technique based on the superimposition of travelling voltage waves on a radially-confining RF voltage in a gas-filled, stacked-ring ion guide.
5806
5807 /// LECO software: LECO software for data acquisition and analysis.
5809
5810 /// ChromaTOF software: Software for acquisition, processing and analysis of data for LECO instruments.
5812
5813 /// LECO instrument model: LECO instrument model.
5815
5816 /// Pegasus HRT: LECO high resolution time-of-flight GC mass spectrometer.
5818
5819 /// Citius HRT: LECO high resolution time-of-flight LC mass spectrometer.
5820 MS_Citius_HRT = 1001802,
5821
5822 /// Pegasus: LECO GC time-of-flight mass spectrometer.
5823 MS_Pegasus = 1001803,
5824
5825 /// TruTOF: LECO bench-top GC time-of-flight mass spectrometer.
5826 MS_TruTOF = 1001804,
5827
5828 /// quantification datatype: The data type of the value reported in a QuantLayer.
5830
5831 /// quantification object attribute: Attributes describing the details of an object relevant for reporting quantification workflows or values.
5833
5834 /// study variable attribute: Attribute describing a study variable.
5836
5837 /// technical replicate: The study variable is 'technical replicate'. The string value denotes the category of technical replicate, e.g. 'run generated from same sample'.
5839
5840 /// biological replicate: The study variable is 'biological replicate'. This means, the run was generated from another individual or sample.
5842
5843 /// experimental condition 'case': The experimental condition is 'case' in contrast to 'control'.
5845
5846 /// experimental condition 'control': The experimental condition is 'control' in contrast to 'case'.
5848
5849 /// experimental condition 'disease': The experimental condition is 'disease' in contrast to 'healthy'.
5851
5852 /// experimental condition 'healthy': The experimental condition is 'healthy' in contrast to 'disease'.
5854
5855 /// generic experimental condition: The experimental condition is given in the value of this term.
5857
5858 /// time series, time point X: The experimental design followed a time series design. The time point of this run is given in the value of this term.
5860
5861 /// dilution series, concentration X: The experimental design followed a dilution series design. The concentration of this run is given in the value of this term.
5863
5864 /// raw file attribute: Attribute describing a raw file.
5866
5867 /// one sample run: The raw file contains the run of one sample (e.g. spectral counting, LC-MS label-free).
5869
5870 /// two sample run: The raw file contains the run of two samples (e.g. SILAC, metabolic labelling).
5872
5873 /// three sample run: The raw file contains the run of three samples (e.g. 3-plex SILAC).
5875
5876 /// four sample run: The raw file contains the run of four samples (e.g. 4-plex iTraq).
5878
5879 /// eight sample run: The raw file contains the run of eight samples (e.g. 8-plex iTraq).
5881
5882 /// raw files group attribute: Attribute describing, how raw files build a raw file group.
5884
5885 /// merge of runs of 1D gel bands: Attribute describing, how raw files build a raw file group.
5887
5888 /// feature list attribute: Attribute describing a feature list.
5890
5891 /// mass trace reporting: rectangles: The mass trace of the features of this feature list specifies rectangles. Each mass trace has the syntax (RT_start,MZ_start,RT_end,MZ_end), i.e. opposite corners are given.
5893
5894 /// mass trace reporting: polygons: The mass trace of the features of this feature list specifies polygons. Each mass trace has the syntax (RT_1, MZ_1, RT_2, MZ_2, ... , RT_i, MZ_i, ... , RT_n, MZ_n), where the line (RT_n, MZ_n)->(RT_1, MZ_1) is implicit.
5896
5897 /// feature attribute: Attribute describing a feature.
5899
5900 /// SRM transition ID: Identifier for an SRM transition in an external document describing additional information about the transition.
5902
5903 /// Progenesis LC-MS: Software from Nonlinear Dynamics for LC-MS label-free workflow.
5905
5906 /// SILACAnalyzer: Software for SILAC workflow.
5908
5909 /// quantitation software comment or customizations: Quantitation software comment or any customizations to the default setup of the software.
5911
5912 /// quantitation analysis summary: The overall workflow of this quantitation report.
5914
5915 /// LC-MS label-free quantitation analysis: LC-MS label-free workflow (RT m/z map).
5917
5918 /// SILAC quantitation analysis: SILAC workflow (heavy, light, and sometimes medium peak).
5920
5921 /// spectral counting quantitation analysis: Spectral counting workflow (number of identified MS2 spectra as approximation of peptide / protein quant).
5923
5924 /// iTRAQ quantitation analysis: Quantification analysis using the SCIEX amine-reactive isobaric tags for relative and absolute quantification (iTRAQ) labelling workflow, wherein 2-8 reporter ions are measured in MS2 spectra near in the 114-121 m/z range.
5926
5927 /// SRM quantitation analysis: Selected Reaction Monitoring workflow (XIC quantitation of precursor / fragment mass pair).
5929
5930 /// metabolic labeling 14N / 15N quantitation analysis: Metabolic labeling workflow (heavy and light versions of peptides, depending on number of nitrogens).
5932
5933 /// LC-MS feature intensity: Maximum peak intensity of the LC-MS feature.
5935
5936 /// LC-MS feature volume: Real (intensity times area) volume of the LC-MS feature.
5938
5939 /// sequence-level spectral count: The number of MS2 spectra identified for a raw peptide sequence without PTMs and charge state in spectral counting.
5941
5942 /// MS1 feature maximum intensity: Maximum intensity of MS1 feature.
5944
5945 /// MS1 feature area: Area of MS1 feature.
5947
5948 /// peak area: Area of MS1 peak (e.g. SILAC, 15N).
5950
5951 /// isotopic pattern area: Area of all peaks belonging to the isotopic pattern of light or heavy peak (e.g. 15N).
5953
5954 /// reporter ion intensity: Intensity of MS2 reporter ion (e.g. iTraq).
5956
5957 /// simple ratio of two values: Simple ratio of two values (enumerator and denominator).
5959
5960 /// sum of MatchedFeature values: Peptide quantification value calculated as sum of MatchedFeature quantification values.
5962
5963 /// normalized peptide value: Normalized peptide value.
5965
5966 /// protein value: sum of peptide values: Protein quantification value calculated as sum of peptide values.
5968
5969 /// normalized protein value: Normalized protein value.
5971
5972 /// max fold change: Global datatype: Maximum of all pair-wise fold changes of group means (e.g. Progenesis).
5974
5975 /// ANOVA p-value: Global datatype: p-value of ANOVA of group means (e.g. Progenesis).
5977
5978 /// t-test p-value: P-value of t-Test of two groups.
5980
5981 /// reporter ion raw value: Intensity (or area) of MS2 reporter ion (e.g. iTraq).
5983
5984 /// reporter ion normalized value: Normalized value of MS2 reporter ion (e.g. iTraq).
5986
5987 /// XIC area: Area of the extracted ion chromatogram (e.g. of a transition in SRM).
5988 MS_XIC_area = 1001858,
5989
5990 /// normalized XIC area: Normalized area of the extracted ion chromatogram (e.g. of a transition in SRM).
5992
5993 /// protein value: mean of peptide ratios: Protein quantification value calculated as mean of peptide ratios.
5995
5996 /// quantification data processing: Terms used to describe types of quantification data processing.
5998
5999 /// normalization to mean of sum of all proteins: Normalization of protein values to the mean of the sum of all protein PSM counts (e.g. spectral counting).
6001
6002 /// quantile normalization, proteins: Normalization of protein values to approach the same distribution.
6004
6005 /// quantile normalization, peptides: Normalization of peptide values to approach the same distribution.
6007
6008 /// Progenesis automatic alignment: Automatic RT alignment of Progenesis software.
6010
6011 /// Progenesis manual alignment: RT alignment of Progenesis software using automatic and manual vectors.
6013
6014 /// Progenesis normalization: Normalization as performed by Progenesis LC-MS.
6016
6017 /// distinct peptide-level q-value: Estimation of the q-value for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs, possibly with different mass modifications, mapping to the same sequence have been collapsed to one entry).
6019
6020 /// protein-level q-value: Estimation of the q-value for proteins.
6022
6023 /// peptide sequence-level p-value: Estimation of the p-value for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry).
6025
6026 /// protein-level p-value: Estimation of the p-value for proteins.
6028
6029 /// peptide sequence-level e-value: Estimation of the e-value for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry).
6031
6032 /// protein-level e-value: Estimation of the e-value for proteins.
6034
6035 /// FDRScore: A smoothing of the distribution of q-values calculated for PSMs from individual search engines, such that ordering of result quality is maintained and all FDRScore values are guaranteed to have a value > 0.
6037
6038 /// modification motif: The regular expression describing the sequence motif for a modification.
6040
6041 /// modification probability: The a priori probability of a modification.
6043
6044 /// ChromaTOF HRT software: Software for acquisition, processing and analysis of data for LECO instruments.
6046
6047 /// MALDI Solutions Microbial Identification: Shimadzu Biotech software for data acquisition, processing, and analysis.
6049
6050 /// offset voltage: The potential difference between two adjacent interface voltages affecting in-source collision induced dissociation.
6052
6053 /// in-source collision-induced dissociation: The dissociation of an ion as a result of collisional excitation during ion transfer from an atmospheric pressure ion source and the mass spectrometer vacuum.
6055
6056 /// mz5 format: mz5 file format, modelled after mzML.
6057 MS_mz5_format = 1001881,
6058
6059 /// transition validation attribute: Attributes of the quality of a transition that affect its selection as appropriate.
6061
6062 /// coefficient of variation: Variation of a set of signal measurements calculated as the standard deviation relative to the mean.
6064
6065 /// signal-to-noise ratio: Unitless number providing the ratio of the total measured intensity of a signal relative to the estimated noise level for that signal.
6067
6068 /// command-line parameters: Parameters string passed to a command-line interface software application, omitting the executable name.
6070
6071 /// SQID: Software for data analysis of peptides and proteins.
6072 MS_SQID = 1001886,
6073
6074 /// SQID:score: The SQID result 'Score'.
6075 MS_SQID_score = 1001887,
6076
6077 /// SQID:deltaScore: The SQID result 'deltaScore'.
6079
6080 /// SQID:protein score: The SQID result 'protein score'.
6082
6083 /// Progenesis:protein normalised abundance: The data type normalised abundance for proteins produced by Progenesis LC-MS.
6085
6086 /// Progenesis:peptide normalised abundance: The data type normalised abundance for peptides produced by Progenesis LC-MS.
6088
6089 /// Progenesis:protein raw abundance: The data type raw abundance for proteins produced by Progenesis LC-MS.
6091
6092 /// Progenesis:peptide raw abundance: The data type raw abundance for peptide produced by Progenesis LC-MS.
6094
6095 /// Progenesis:confidence score: The data type confidence score produced by Progenesis LC-MS.
6097
6098 /// Progenesis:peptide count: The data type peptide count produced by Progenesis LC-MS.
6100
6101 /// Progenesis:feature intensity: The data type feature intensity produced by Progenesis LC-MS.
6103
6104 /// MaxQuant:peptide counts (unique): The data type peptide counts (unique) produced by MaxQuant.
6106
6107 /// MaxQuant:peptide counts (all): The data type peptide counts (all) produced by MaxQuant.
6109
6110 /// MaxQuant:peptide counts (razor+unique): The data type peptide counts (razor+unique) produced by MaxQuant.
6112
6113 /// MaxQuant:sequence length: The data type sequence length produced by MaxQuant.
6115
6116 /// MaxQuant:PEP: The data type PEP (posterior error probability) produced by MaxQuant.
6118
6119 /// MaxQuant:LFQ intensity: The data type LFQ intensity produced by MaxQuant.
6121
6122 /// MaxQuant:feature intensity: The data type feature intensity produced by MaxQuant.
6124
6125 /// MaxQuant:MS/MS count: The data type MS2 count produced by MaxQuant.
6127
6128 /// emPAI value: The emPAI value of protein abundance, produced from the emPAI algorithm.
6130
6131 /// APEX value: The APEX value of protein abundance, produced from the APEX software.
6132 MS_APEX_value = 1001906,
6133
6134 /// retention time window width: The full width of a retention time window for a chromatographic peak.
6136
6137 /// ISQ: Thermo Scientific ISQ single quadrupole MS with the ExtractraBrite source.
6138 MS_ISQ = 1001908,
6139
6140 /// Velos Plus: Thermo Scientific second generation Velos.
6141 MS_Velos_Plus = 1001909,
6142
6143 /// LTQ Orbitrap Elite: Thermo Scientific second generation Velos and Orbitrap.
6145
6146 /// Q Exactive: Thermo Scientific Q Exactive.
6147 MS_Q_Exactive = 1001911,
6148
6149 /// PinPoint: Thermo Scientific PinPoint SRM analysis software.
6150 MS_PinPoint = 1001912,
6151
6152 /// S-lens voltage: Potential difference setting of the Thermo Scientific S-lens stacked-ring ion guide in volts.
6154
6155 /// pymzML: Python module to interface mzML Data.
6156 MS_pymzML = 1001914,
6157
6158 /// leukocyte elastase: Enzyme leukocyte elastase (EC 3.4.21.37).
6160
6161 /// proline endopeptidase: Enzyme proline endopeptidase (EC 3.4.21.26).
6163
6164 /// glutamyl endopeptidase: Enzyme glutamyl endopeptidase (EC 3.4.21.19).
6166
6167 /// staphylococcal protease (glutamyl endopeptidase): Enzyme glutamyl endopeptidase (EC 3.4.21.19).
6169
6170 /// Glu-C (glutamyl endopeptidase): Enzyme glutamyl endopeptidase (EC 3.4.21.19).
6172
6173 /// 2-iodobenzoate: Chemical iodobenzoate. Cleaves after W.
6175
6176 /// ProteomeXchange accession number: Main identifier of a ProteomeXchange dataset.
6178
6179 /// ProteomeXchange accession number version number: Version number of a ProteomeXchange accession number.
6181
6182 /// Digital Object Identifier (DOI): DOI unique identifier of a publication.
6184
6185 /// doi (Digital Object Identifier (DOI)): DOI unique identifier of a publication.
6187
6188 /// external reference keyword: Free text attribute that can enrich the information about an entity.
6190
6191 /// journal article keyword: Keyword present in a scientific publication.
6193
6194 /// submitter keyword: Keyword assigned by the data submitter.
6196
6197 /// curator keyword: Keyword assigned by a data curator.
6199
6200 /// Tranche file hash: Hash assigned by the Tranche resource to an individual file.
6202
6203 /// Tranche project hash: Hash assigned by the Tranche resource to a whole project.
6205
6206 /// PRIDE experiment URI: URI that allows the access to one experiment in the PRIDE database.
6208
6209 /// PRIDE project URI: URI that allows the access to one project in the PRIDE database.
6211
6212 /// source interface: The source interface.
6214
6215 /// source interface model: The source interface model.
6217
6218 /// source sprayer: The source sprayer.
6220
6221 /// source sprayer type: The source sprayer type.
6223
6224 /// source sprayer manufacturer: The source sprayer manufacturer.
6226
6227 /// source sprayer model: The source sprayer model.
6229
6230 /// sample plate: Plate where the sample solution is spotted in a MALDI or similar instrument.
6232
6233 /// sample plate type: The sample plate type.
6235
6236 /// stainless steel plate: Stainless steel plate.
6238
6239 /// coated glass plate: Coated glass plate.
6241
6242 /// electrospray supply type: Whether the sprayer is fed or is loaded with sample once.
6244
6245 /// static supply electrospray: The sprayer is loaded with sample once.
6247
6248 /// fed supply electrospray: The sprayer is continuously fed with sample.
6250
6251 /// Collision cell exit potential: Potential difference between Q2 and Q3 in a triple quadrupole instrument in volts.
6253
6254 /// CXP (Collision cell exit potential): Potential difference between Q2 and Q3 in a triple quadrupole instrument in volts.
6256
6257 /// Pegasus 4D: LECO nominal mass resolution time-of-flight GCxGC mass spectrometer.
6258 MS_Pegasus_4D = 1001945,
6259
6260 /// PEAKS Studio: PEAKS Studio software for data analysis.
6262
6263 /// PEAKS Online: PEAKS Online software for high throughput data analysis.
6265
6266 /// PEAKS Node: PEAKS Node software for high throughput data analysis.
6267 MS_PEAKS_Node = 1001948,
6268
6269 /// BSI software: Bioinformatics Solutions Inc. Software for data processing and analysis.
6271
6272 /// PEAKS:peptideScore: The PEAKS peptide '-10lgP Score'.
6274
6275 /// PEAKS:proteinScore: The PEAKS protein '-10lgP Score'.
6277
6278 /// ZCore:probScore: The ZCore probability score.
6280
6281 /// source interface manufacturer: The source interface manufacturer.
6283
6284 /// acquisition parameter: Parameters used in the mass spectrometry acquisition.
6286
6287 /// no cleavage: No cleavage.
6289
6290 /// unspecific cleavage: Unspecific cleavage.
6292
6293 /// (?<=[ALIV])(?!P): Regular expression for leukocyte elastase.
6295
6296 /// (?<=[HKR]P)(?!P): Regular expression for proline endopeptidase.
6298
6299 /// (?<=[^E]E): Regular expression for glutamyl endopeptidase.
6300 MS_______E_E_ = 1001959,
6301
6302 /// (?<=W): Regular expression for 2-iodobenzoate.
6303 MS_____W_ = 1001960,
6304
6305 /// peptide spectrum match scoring algorithm: Algorithm used to score the match between a spectrum and a peptide ion.
6307
6308 /// Mascot:C13 counts: C13 peaks to use in peak detection.
6310
6311 /// ProteinExtractor:Weighting: Weighting factor for protein list compilation by ProteinExtractor.
6313
6314 /// ProteinScape:second round Mascot: Flag indicating a second round search with Mascot.
6316
6317 /// ProteinScape:second round Phenyx: Flag indicating a second round search with Phenyx.
6319
6320 /// product ion mobility: The mobility of an MS2 product ion, as measured by ion mobility mass spectrometry.
6322
6323 /// product ion drift time: The ion drift time of an MS2 product ion.
6325
6326 /// PTM localization PSM-level statistic: Statistic to convey the confidence of the localization of an amino acid modification on a peptide sequence at the PSM-level.
6328
6329 /// phosphoRS score: phosphoRS score for PTM site location at the PSM-level.
6331
6332 /// phosphoRS sequence probability: Probability that the respective isoform is correct.
6334
6335 /// phosphoRS site probability: Estimate of the probability that the respective site is truly phosphorylated.
6337
6338 /// PTM scoring algorithm version: Version of the post-translational modification scoring algorithm.
6340
6341 /// DeBunker: DeBunker software.
6342 MS_DeBunker = 1001973,
6343
6344 /// DeBunker:score: Score specific to DeBunker.
6346
6347 /// delta m/z: The difference between a theoretically calculated m/z and the corresponding experimentally measured m/z. It can be expressed as absolute or relative value.
6348 MS_delta_m_z = 1001975,
6349
6350 /// m/z difference (delta m/z): The difference between a theoretically calculated m/z and the corresponding experimentally measured m/z. It can be expressed as absolute or relative value.
6352
6353 /// delta M: The difference between a theoretically calculated molecular mass M and the corresponding experimentally measured M. It can be expressed as absolute or relative value.
6354 MS_delta_M = 1001976,
6355
6356 /// mass difference (delta M): The difference between a theoretically calculated molecular mass M and the corresponding experimentally measured M. It can be expressed as absolute or relative value.
6358
6359 /// MSQuant: MSQuant software.
6360 MS_MSQuant = 1001977,
6361
6362 /// MSQuant:PTM-score: The PTM score from MSQuant software.
6364
6365 /// MaxQuant:PTM Score: The PTM score from MaxQuant software.
6367
6368 /// MaxQuant:Phospho (STY) Probabilities: The Phospho (STY) Probabilities from MaxQuant software.
6370
6371 /// MaxQuant:Phospho (STY) Score Diffs: The Phospho (STY) Score Diffs from MaxQuant software.
6373
6374 /// MaxQuant:P-site localization probability: The P-site localization probability value from MaxQuant software.
6376
6377 /// MaxQuant:PTM Delta Score: The PTM Delta Score value from MaxQuant software (Difference between highest scoring site and second highest).
6379
6380 /// Ascore software: Ascore software.
6382
6383 /// Ascore: A-score for PTM site location at the PSM-level.
6384 MS_Ascore = 1001985,
6385
6386 /// H-Score: H-Score for peptide phosphorylation site location.
6387 MS_H_Score = 1001986,
6388
6389 /// vacuum drying MALDI sample preparation: Vacuum-drying MALDI sample preparation crystallization method.
6391
6392 /// crushed crystal MALDI sample preparation: Crushed-crystal MALDI sample preparation method.
6394
6395 /// fast evaporation MALDI sample preparation: Fast-evaporation MALDI sample preparation method.
6397
6398 /// overlayer MALDI sample preparation: Overlayer method combining features of the crushed-crystal method and the fast-evaporation method.
6400
6401 /// sandwich MALDI sample preparation: Sandwich MALDI sample preparation method.
6403
6404 /// spin coating MALDI sample preparation: Spin coating MALDI sample preparation method.
6406
6407 /// quick and dirty MALDI sample preparation: Quick & dirty (Q&D) sample preparation separating matrix handling from sample handling.
6409
6410 /// top hat baseline reduction: Top-hat morphological filter based on the basic morphological operations 'erosion' and 'dilatation'.
6412
6413 /// convex hull baseline reduction: Constructs the baseline by fitting multiple parabolas to the spectrum starting with the large scale structures.
6415
6416 /// median baseline reduction: The spectrum that will be baseline subtracted is divided into a number of segments.
6418
6419 /// wavelet transformation smoothing: The random noise is removed by using the undecimated wavelet transform.
6421
6422 /// sophisticated numerical annotation procedure: It searches for known patterns in the measured spectrum.
6424
6425 /// SNAP (sophisticated numerical annotation procedure): It searches for known patterns in the measured spectrum.
6427
6428 /// area normalization: Normalization of areas below the curves.
6430
6431 /// LIFT: A Bruker's proprietary technique where molecular ions are initially accelerated at lower energy, then collide with inert gas in a collision cell that is then 'lifted' to high potential. The use of inert gas is optional, as it could lift also fragments provided by LID.
6432 MS_LIFT = 1002000,
6433
6434 /// MS1 label-based raw feature quantitation: MS1 label-based raw feature quantitation.
6436
6437 /// MS1 label-based peptide level quantitation: MS1 label-based peptide level quantitation.
6439
6440 /// MS1 label-based protein level quantitation: MS1 label-based protein level quantitation.
6442
6443 /// MS1 label-based proteingroup level quantitation: MS1 label-based proteingroup level quantitation.
6445
6446 /// iRT retention time normalization standard: A de facto standard providing the retention times at which a specific set of 10 reference peptides exit the reference chromatographic column. The kit may be obtain from Biognosys.
6448
6449 /// SRM transition type: The type of the transitions, e.g. target or decoy.
6451
6452 /// MRM transition type (SRM transition type): The type of the transitions, e.g. target or decoy.
6454
6455 /// target SRM transition: A transition used to target a specific compound that may be in the sample.
6457
6458 /// target MRM transition (target SRM transition): A transition used to target a specific compound that may be in the sample.
6460
6461 /// decoy SRM transition: A transition not expected to be present in the sample and used to calculate statistical confidence of target transition detections in some workflows.
6463
6464 /// decoy MRM transition (decoy SRM transition): A transition not expected to be present in the sample and used to calculate statistical confidence of target transition detections in some workflows.
6466
6467 /// isobaric label quantitation analysis: Quantitation analysis using an isobaric labelling workflow.
6469
6470 /// TMT quantitation analysis: Quantitation analysis using the Thermo Fisher amine-reactive tandem mass tag (TMT) labelling workflow, wherein 2-10 reporter ions are measured in MS2 spectra in the 126-131 m/z.
6472
6473 /// desorption electrospray ionization: Combination of electrospray and desorption ionization method that ionizes gases, liquids and solids in open air under atmospheric pressure.
6475
6476 /// DESI (desorption electrospray ionization): Combination of electrospray and desorption ionization method that ionizes gases, liquids and solids in open air under atmospheric pressure.
6478
6479 /// Mascot:PTM site assignment confidence: Relative probability that PTM site assignment is correct, derived from the Mascot score difference between matches to the same spectrum (Mascot Delta Score).
6481
6482 /// collision energy ramp start: Collision energy at the start of the collision energy ramp.
6484
6485 /// collision energy ramp end: Collision energy at the end of the collision energy ramp.
6487
6488 /// spectral count peptide level quantitation: Spectral count peptide level quantitation.
6490
6491 /// spectral count protein level quantitation: Spectral count protein level quantitation.
6493
6494 /// spectral count proteingroup level quantitation: Spectral count proteingroup level quantitation.
6496
6497 /// MS1 label-based analysis: MS1 label-based analysis.
6499
6500 /// label-free raw feature quantitation: Label-free raw feature quantitation.
6502
6503 /// label-free peptide level quantitation: Label-free peptide level quantitation.
6505
6506 /// label-free protein level quantitation: Label-free protein level quantitation.
6508
6509 /// label-free proteingroup level quantitation: Label-free proteingroup level quantitation.
6511
6512 /// MS2 tag-based analysis: MS2 tag-based analysis.
6514
6515 /// MS2 tag-based feature level quantitation: MS2 tag-based feature level quantitation.
6517
6518 /// MS2 tag-based peptide level quantitation: MS2 tag-based peptide level quantitation.
6520
6521 /// MS2 tag-based protein level quantitation: MS2 tag-based protein level quantitation.
6523
6524 /// MS2 tag-based proteingroup level quantitation: MS2 tag-based proteingroup level quantitation.
6526
6527 /// nucleic acid base modification: Nucleic acid base modification (substitution, insertion or deletion).
6529
6530 /// original nucleic acid sequence: Specification of the original nucleic acid sequence, prior to a modification. The value slot should hold the DNA or RNA sequence.
6532
6533 /// modified nucleic acid sequence: Specification of the modified nucleic acid sequence. The value slot should hold the DNA or RNA sequence.
6535
6536 /// PASSEL transition group browser URI: URI to retrieve transition group data for a PASSEL (PeptideAtlas SRM Experiment Library) experiment.
6538
6539 /// PeptideAtlas dataset URI: URI that allows access to a PeptideAtlas dataset.
6541
6542 /// contact role: Role of the contact person.
6544
6545 /// first author: The first of a set of authors associated with a publication or release. There may be more than one first author in cases where several authors share primary attribution.
6547
6548 /// senior author: The last of a set of authors associated with a publication or release. There may be more than one senior author in cases where several authors share senior attribution.
6550
6551 /// co-author: One of a set of authors associated with a publication or release.
6552 MS_co_author = 1002036,
6553
6554 /// dataset submitter: A person who submits a dataset to a repository.
6556
6557 /// unlabeled sample: A sample that has not been labelled or modified. This is often referred to as \"light\" to distinguish from \"heavy\".
6559
6560 /// light labeled sample (unlabeled sample): A sample that has not been labelled or modified. This is often referred to as \"light\" to distinguish from \"heavy\".
6562
6563 /// inlet attribute: Inlet properties that are associated with a value.
6565
6566 /// inlet temperature: The temperature of the inlet of a mass spectrometer.
6568
6569 /// source temperature: The temperature of the source of a mass spectrometer.
6571
6572 /// modulation time: The duration of a complete cycle of modulation in a comprehensive two-dimensional separation system, equals the length of a second dimension chromatogram, i.e., the time between two successive injections into the second column.
6574
6575 /// ProteinProspector: ProteinProspector software for data acquisition and analysis.
6577
6578 /// ProteinProspector:score: The ProteinProspector result 'Score'.
6580
6581 /// ProteinProspector:expectation value: The ProteinProspector result 'Expectation value'.
6583
6584 /// native source path: The original source path used for directory-based sources.
6586
6587 /// MS-GF: MS-GF software used to re-score the peptide-spectrum matches.
6588 MS_MS_GF = 1002047,
6589
6590 /// MS-GF+: MS-GF+ software used to analyze the spectra.
6591 MS_MS_GF_ = 1002048,
6592
6593 /// MS-GFDB (MS-GF+): MS-GF+ software used to analyze the spectra.
6595
6596 /// MS-GF:RawScore: MS-GF raw score.
6598
6599 /// MS-GF:DeNovoScore: MS-GF de novo score.
6601
6602 /// MS-GF:Energy: MS-GF energy score.
6604
6605 /// MS-GF:SpecEValue: MS-GF spectral E-value.
6607
6608 /// MS-GF:EValue: MS-GF E-value.
6610
6611 /// MS-GF:QValue: MS-GF Q-value.
6613
6614 /// MS-GF:PepQValue: MS-GF peptide-level Q-value.
6616
6617 /// MS-GF:PEP: MS-GF posterior error probability.
6618 MS_MS_GF_PEP = 1002056,
6619
6620 /// modification specificity protein N-term: As parameter for search engine: apply the modification only at the N-terminus of a protein.
6622
6623 /// modification specificity protein C-term: As parameter for search engine: apply the modification only at the C-terminus of a protein.
6625
6626 /// Microsoft Excel: Microsoft Excel (can be used for spectral counting).
6628
6629 /// database UniProtKB/TrEMBL: The name of the UniProtKB/TrEMBL database.
6631
6632 /// decoy DB from UniProtKB/TrEMBL: Decoy database from a TrEMBL protein sequence database.
6634
6635 /// metabolic labelling: natural N (mainly 14N): Metabolic labelling: natural N (mainly 14N).
6637
6638 /// FindPairs: Software e.g. for SILAC and 14N/15N workflow, part of the PeakQuant suite.
6639 MS_FindPairs = 1002063,
6640
6641 /// peptide consensus RT: Peptide consensus retention time.
6643
6644 /// peptide consensus m/z: Peptide consensus mass/charge ratio.
6646
6647 /// ratio calculation method: Method used to calculate the ratio.
6649
6650 /// protein value: median of peptide ratios: Protein quantification value calculated as median of peptide ratios.
6652
6653 /// metabolic labelling: heavy N (mainly 15N): Metabolic labelling: heavy N (mainly 15N).
6655
6656 /// metabolic labelling purity: Metabolic labelling: Description of labelling purity. Usually the purity of feeding material (e.g. 95%), or the inclusion rate derived from isotopic peak pattern shape.
6658
6659 /// t-test: Perform a t-test (two groups). Specify in string value, whether paired / unpaired, variance equal / different, one- / two-sided version is performed.
6660 MS_t_test = 1002070,
6661
6662 /// ANOVA-test: Perform an ANOVA-test (more than two groups). Specify in string value, which version is performed.
6663 MS_ANOVA_test = 1002071,
6664
6665 /// p-value: P-value as result of one of the processing steps described. Specify in the description, which processing step it was.
6666 MS_p_value = 1002072,
6667
6668 /// mzIdentML format: The mzIdentML format for peptide and protein identification data from the PSI. File extension '.mzid'.
6670
6671 /// quantification file format: File format containing quantification results.
6673
6674 /// mzQuantML format: The mzQuantML format for quantification data from the PSI. File extension '.mzq'.
6676
6677 /// PAnalyzer: PAnalyzer software for getting protein evidence categories.
6678 MS_PAnalyzer = 1002076,
6679
6680 /// impact: Bruker Daltonics' impact: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.
6681 MS_impact = 1002077,
6682
6683 /// ProteomeDiscoverer:1. Static Modification: ProteomeDiscoverer's 1st static post-translational modification (PTM) input parameter.
6685
6686 /// ProteomeDiscoverer:2. Static Modification: ProteomeDiscoverer's 2nd static post-translational modification (PTM) input parameter.
6688
6689 /// ProteomeDiscoverer:Spectrum Selector:Precursor Clipping Range Before: Precursor clipping range before.
6691
6692 /// ProteomeDiscoverer:Spectrum Selector:Precursor Clipping Range After: Precursor clipping range after.
6694
6695 /// first column elution time: The time of elution from the first chromatographic column in the chromatographic separation step, relative to the start of chromatography on the first column.
6697
6698 /// second column elution time: The time of elution from the second chromatographic column in the chromatographic separation step, relative to the start of the chromatography on the second column.
6700
6701 /// multidimensional chromatography modulation description: Multidimensional chromatography modulation description.
6703
6704 /// two-dimensional gas chromatography with fixed modulation time: Two-dimensional gas chromatography where a single modulation time is used throughout the acquisition.
6706
6707 /// two-dimensional gas chromatography with discrete modulation time steps: Two-dimensional gas chromatography where the acquisition is divided into steps, each with a different modulation time.
6709
6710 /// two-dimensional liquid chromatography with fixed modulation time: Two-dimensional liquid chromatography where a single modulation time is used throughout the acquisition.
6712
6713 /// two-dimensional liquid chromatography with discrete modulation time steps: Two-dimensional liquid chromatography where the acquisition is divided into steps, each with a different modulation time.
6715
6716 /// ProteomeDiscoverer:Peptide Without Protein XCorr Threshold: XCorr threshold for storing peptides that do not belong to a protein.
6718
6719 /// Calculate Probability Scores: Flag indicating that a probability score for the assessment that a reported peptide match is a random occurrence is calculated.
6721
6722 /// ProteomeDiscoverer:Maximum Delta Cn: Delta Cn threshold for filtering out PSM's.
6724
6725 /// Percolator:Validation based on: Algorithm (e.g. q-value or PEP) used for calculation of the validation score using Percolator.
6727
6728 /// search engine input parameter: Search engine input parameter.
6730
6731 /// common search engine input parameter: Search engine input parameter that is shared by more than one search engine.
6733
6734 /// Mascot input parameter: Search engine input parameters specific to Mascot.
6736
6737 /// SEQUEST input parameter: Search engine input parameters specific to SEQUEST.
6739
6740 /// Phenyx input parameter: Search engine input parameters specific to Phenyx.
6742
6743 /// ProteinExtractor input parameter: Search engine input parameters specific to ProteinExtractor.
6745
6746 /// OMSSA input parameter: Search engine input parameters specific to OMSSA.
6748
6749 /// ProteinScape input parameter: Search engine input parameters specific to ProteinScape.
6751
6752 /// ProteomeDiscoverer input parameter: Search engine input parameters specific to ProteomeDiscoverer.
6754
6755 /// software input parameter: Software input parameters.
6757
6758 /// common software input parameter: Software input parameter that is shared by more than one software.
6760
6761 /// software specific input parameter: Software specific input parameter.
6763
6764 /// Scaffold input parameter: Search engine input parameters specific to Scaffold.
6766
6767 /// Percolator input parameter: Search engine input parameters specific to Percolator.
6769
6770 /// higher score better: Indicates that a higher score is better.
6772
6773 /// lower score better: Indicates that a lower score is better.
6775
6776 /// assay attribute: Attribute describing an assay.
6778
6779 /// assay label attribute: Attribute describing an assay label.
6781
6782 /// protein group list attribute: Attribute describing a protein group list.
6784
6785 /// protein group attribute: Attribute describing a protein group.
6787
6788 /// protein list attribute: Attribute describing a protein list.
6790
6791 /// peptide consensus list attribute: Attribute describing a peptide consensus list.
6793
6794 /// peptide consensus attribute: Attribute describing a peptide consensus.
6796
6797 /// small molecule list attribute: Attribute describing a small molecule list.
6799
6800 /// small molecule attribute: Attribute describing a small molecule.
6802
6803 /// small molecule modification attribute: Attribute describing a small molecule modification.
6805
6806 /// experiment name: The name for identifying an experiment.
6808
6809 /// spectral count feature: Dummy decribing a spectral count feature.
6811
6812 /// counts reporting: FeatureList of spectral counts.
6814
6815 /// x-Tracker: X-Tracker generic tool for quantitative proteomics.
6816 MS_x_Tracker = 1002123,
6817
6818 /// ProteoSuite: ProteoSuite software for the analysis of quantitative proteomics data.
6820
6821 /// combined FDRScore: FDRScore values specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools.
6823
6824 /// database UniProtKB: The name of the UniProtKB knowledgebase.
6826
6827 /// identification file attribute: Attribute describing an identification file.
6829
6830 /// method file format: Attribute describing a method file format.
6832
6833 /// ITRAQAnalyzer: Software for iTRAQ workflow. Extracts and normalizes iTRAQ information from an MS experiment.
6835
6836 /// identification file format: Attribute describing an identification file format.
6838
6839 /// TOPP noise filter: Noise filter component of the TOPP software.
6841
6842 /// TOPP NoiseFilterGaussian: Removes noise from profile spectra by using a gaussian smoothing.
6844
6845 /// TOPP NoiseFilterSGolay: Removes noise from profile spectra by using a Savitzky-Golay smoothing.
6847
6848 /// TOPP peak picker: Peak picker component of the TOPP software.
6850
6851 /// TOPP PeakPickerHiRes: Finds mass spectrometric peaks in high-resoluted profile mass spectra.
6853
6854 /// TOPP PeakPickerWavelet: Finds mass spectrometric peaks with a wavelet algorithm in low-resoluted profile mass spectra.
6856
6857 /// TOPP spectra filter: Spectra filter component of the TOPP software.
6859
6860 /// TOPP SpectraFilterBernNorm: Applies a Bern et al normalization to peak spectra.
6862
6863 /// TOPP SpectraFilterMarkerMower: Applies a filter to peak spectra for marked peaks.
6865
6866 /// TOPP SpectraFilterNLargest: Retains the n largest peaks of a peak spectra.
6868
6869 /// TOPP SpectraFilterNormalizer: Applies a TIC/maximal intensity normalization to peak spectra.
6871
6872 /// TOPP SpectraFilterParentPeakMower: Filters putative unfragmented precursor ions from tandem spectra.
6874
6875 /// TOPP SpectraFilterScaler: Applies a filter to peak spectra after intensity scaling according to rank.
6877
6878 /// TOPP SpectraFilterSqrtMower: Applies a filter to peak spectra after intensity scaling to the square root.
6880
6881 /// TOPP SpectraFilterThresholdMower: Applies a filter of peaks below a given threshold to peak spectra.
6883
6884 /// TOPP SpectraFilterWindowMower: Applies a filter of the largest peaks in a sliding window over a peak spectrum.
6886
6887 /// TOPP map aligner: Map aligner component of the TOPP software.
6889
6890 /// TOPP MapAlignerIdentification: Corrects retention time distortions between maps based on common peptide identifications.
6892
6893 /// TOPP MapAlignerPoseClustering: Corrects retention time distortions between maps using a pose clustering approach.
6895
6896 /// TOPP MapAlignerSpectrum: Corrects retention time distortions between maps by spectrum alignment.
6898
6899 /// numerator data type attribute: Attribute describing the data type of the numerator of a ratio.
6901
6902 /// denominator data type attribute: Attribute describing the data type of the denominator of a ratio.
6904
6905 /// protein level PSM counts: The number of spectra identified for this protein in spectral counting.
6907
6908 /// TOPP DTAExtractor: Extracts spectra of an MS run file to several files in DTA format.
6910
6911 /// TOPP IDMerger: Merges several protein/peptide identification files into one file.
6913
6914 /// TOPP IDFileConverter: Converts identification engine file formats.
6916
6917 /// TOPP SpectraMerger: Merges spectra from an LC/MS map, either by precursor or by RT blocks.
6919
6920 /// TOPP MzTabExporter: Exports various XML formats to an mzTab file.
6922
6923 /// TOPP MassTraceExtractor: Annotates mass traces in centroided LC/MS maps.
6925
6926 /// TOPP PrecursorMassCorrector: Correct the precursor entries of tandem MS scans.
6928
6929 /// TOPP HighResPrecursorMassCorrector: Performs precursor mz correction on centroided high resolution data.
6931
6932 /// TOPP AdditiveSeries: Computes an additive series to quantify a peptide in a set of samples.
6934
6935 /// TOPP Decharger: Decharges and merges different feature charge variants of the same chemical entity.
6937
6938 /// TOPP EICExtractor: Quantifies signals at given positions in (raw or picked) LC/MS maps.
6940
6941 /// TOPP feature finder: Feature finder component of the TOPP software.
6943
6944 /// TOPP FeatureFinderCentroided: Detects two-dimensional features in centroided LC-MS data.
6946
6947 /// TOPP FeatureFinderRaw: Detects two-dimensional features in uncentroided LC-MS data.
6949
6950 /// TOPP FeatureFinderIsotopeWavelet: Detects two-dimensional features in uncentroided LC-MS data with a wavelet algorithm.
6952
6953 /// TOPP FeatureFinderMetabo: Detects two-dimensional features in centroided LC-MS data of metabolites.
6955
6956 /// TOPP FeatureFinderMRM: Quantifies features LC-MS/MS MRM data.
6958
6959 /// TOPP ProteinQuantifier: Computes protein abundances from annotated feature/consensus maps.
6961
6962 /// TOPP ConsensusMapNormalizer: Normalizes maps of one consensus XML file (after linking).
6964
6965 /// TOPP MapRTTransformer: Applies retention time transformations to maps.
6967
6968 /// TOPP feature linker: Feature linker component of the TOPP software.
6970
6971 /// TOPP FeatureLinkerLabeled: Groups corresponding isotope-labeled features in a feature map.
6973
6974 /// TOPP FeatureLinkerUnlabeled: Groups corresponding features from multiple maps.
6976
6977 /// TOPP FeatureLinkerUnlabeledQT: Groups corresponding features from multiple maps using a quality threshold clustering approach.
6979
6980 /// TOPP CompNovo: Performs a peptide/protein identification with the CompNovo engine.
6982
6983 /// TOPP CompNovoCID: Performs a peptide/protein identification with the CompNovo engine in collision-induced dissociation (CID) mode.
6985
6986 /// TOPP software adaptor: Software adaptor to an external program in the TOPP software.
6988
6989 /// TOPP InspectAdapter: Identifies MS2 spectra using the external program Inspect.
6991
6992 /// TOPP MascotAdapter: Identifies MS2 spectra using the external program Mascot.
6994
6995 /// TOPP MascotAdapterOnline: Identifies MS2 spectra using the online version of the external program Mascot.
6997
6998 /// TOPP OMSSAAdapter: Identifies MS2 spectra using the external program OMSSA.
7000
7001 /// TOPP PepNovoAdapter: Identifies MS2 spectra using the external program PepNovo.
7003
7004 /// TOPP XTandemAdapter: Identifies MS2 spectra using the external program XTandem.
7006
7007 /// TOPP SpecLibSearcher: Identifies peptide MS2 spectra by spectral matching with a searchable spectral library.
7009
7010 /// TOPP ConsensusID: Computes a consensus identification from peptide identifications of several identification engines.
7012
7013 /// TOPP IDConflictResolver: Resolves ambiguous annotations of features with peptide identifications.
7015
7016 /// TOPP IDFilter: Filters results from protein or peptide identification engines based on different criteria.
7018
7019 /// TOPP IDMapper: Assigns protein/peptide identifications to feature or consensus features.
7021
7022 /// TOPP IDPosteriorErrorProbability: Estimates posterior error probabilities using a mixture model.
7024
7025 /// TOPP IDRTCalibration: Calibrate Retention times of peptide hits to standards.
7027
7028 /// TOPP PeptideIndexer: Refreshes the protein references for all peptide hits.
7030
7031 /// TOPP PrecursorIonSelector: A tool for precursor ion selection based on identification results.
7033
7034 /// TOPP MRMMapper: MRMMapper maps measured chromatograms (mzML) and the transitions used (TraML).
7036
7037 /// TOPP OpenSwath component: OpenSwath component of the TOPP software.
7039
7040 /// TOPP OpenSwathAnalyzer: Picks peaks and finds features in an SRM experiment.
7042
7043 /// TOPP OpenSwathChromatogramExtractor: Extract chromatograms (XIC) from a MS2 map file.
7045
7046 /// TOPP OpenSwathDecoyGenerator: Generates decoys according to different models for a specific TraML.
7048
7049 /// TOPP OpenSwathFeatureXMLToTSV: Converts a featureXML to a mProphet tsv (tab separated values).
7051
7052 /// TOPP OpenSwathRTNormalizer: Generates a transformation file for retention time space into normalized space.
7054
7055 /// TOPP ProteinInference: Infer proteins from a list of (high-confidence) peptides.
7057
7058 /// TOPP FalseDiscoveryRate: Estimates the false discovery rate on peptide and protein level using decoy searches.
7060
7061 /// ProteoWizard msconvert: Converts, filters, and processes mass spectrometry data in variety of formats.
7063
7064 /// ProteoWizard idconvert: Converts, filters, and processes identifications from shotgun proteomics experiments.
7066
7067 /// ProteoWizard chainsaw: Filters and processes protein sequence databases.
7069
7070 /// ProteoWizard msaccess: Filters, processes, and displays mass spectrometry data in a variety of ways.
7072
7073 /// ProteoWizard SeeMS: An interactive GUI application to view and filter mass spectrometry data in a variety of formats.
7075
7076 /// IsobariQ: A quantitative software package designed for analysis of IPTL, TMT and iTRAQ data.
7077 MS_IsobariQ = 1002210,
7078
7079 /// Variance stabilizing normalization: The model incorporates data calibration (normalization), a model for the dependence of the variance on the mean intensity, and a variance stabilizing data transformation.
7081
7082 /// IPTL quantitation analysis: Quantification analysis using a labelling strategy where both peptide termini are labelled so that the peptides from different labelling schema are isobaric.
7084
7085 /// PAnalyzer:conclusive protein: A protein identified by at least one unique (distinct, discrete) peptide (peptides are considered different only if they can be distinguished by evidence in mass spectrum).
7087
7088 /// PAnalyzer:indistinguishable protein: A member of a group of proteins sharing all peptides that are exclusive to the group (peptides are considered different only if they can be distinguished by evidence in mass spectrum).
7090
7091 /// PAnalyzer:non-conclusive protein: A protein sharing all its matched peptides with either conclusive or indistinguishable proteins (peptides are considered different only if they can be distinguished by evidence in mass spectrum).
7093
7094 /// PAnalyzer:ambiguous group member: A protein sharing at least one peptide not matched to either conclusive or indistinguishable proteins (peptides are considered different only if they can be distinguished by evidence in mass spectrum).
7096
7097 /// decoy peptide: A putative identified peptide issued from a decoy sequence database.
7099
7100 /// percent collision energy ramp start: Collision energy at the start of the collision energy ramp in percent, normalized to the mass of the ion.
7102
7103 /// percent collision energy ramp end: Collision energy at the end of the collision energy ramp in percent, normalized to the mass of the ion.
7105
7106 /// MRMaid: A web-based SRM assay design tool whose transitions are generated by mining the millions of identified peptide spectra held in the EBI's PRIDE database.
7107 MS_MRMaid = 1002220,
7108
7109 /// MRMaid:peptide score: Score in MRMaid to indicate the expected performance of the peptide in SRM.
7111
7112 /// SRM transition attribute: Attribute associated with a SRM transition.
7114
7115 /// precursor ion detection probability: Probability of detecting precursor when parent protein is present.
7117
7118 /// product ion detection probability: Probability of detecting product ion when precursor ion is present.
7120
7121 /// average product ion intensity: Average value of product ion intensity in a collection of identified spectra.
7123
7124 /// product ion intensity standard deviation: Standard deviation of product ion intensity in a collection of identified spectra.
7126
7127 /// number of product ion observations: The number of times the specific product ion has been observed in a series of SRM experiments.
7129
7130 /// number of precursor ion observations: The number of times the specific precursor ion has been observed in a series of SRM experiments.
7132
7133 /// ProteomeDiscoverer:Mascot:Significance Middle: Calculated relaxed significance when performing a decoy search for high-confidence peptides.
7135
7136 /// ProteomeDiscoverer:Mascot:Significance High: Calculated relaxed significance when performing a decoy search for medium-confidence peptides.
7138
7139 /// regular expressions for a GUID: ([A-Fa-f0-9]\{8\}-([A-Fa-f0-9]\{4\}-)\{3\}[A-Fa-f0-9]\{12\}).
7141
7142 /// ProteomeDiscoverer:Default FDR calculator: The default FDR calculator as globally unique identifier (GUID).
7144
7145 /// ProteomeDiscoverer:SEQUEST:Low resolution spectra contained: Flag indicating if low-resolution spectra are taken into consideration.
7147
7148 /// selected precursor m/z: Mass-to-charge ratio of a precursor ion selected for fragmentation.
7150
7151 /// ProteoGrouper:PDH score: A score assigned to a single protein accession (modelled as ProteinDetectionHypothesis in mzIdentML), based on summed peptide level scores.
7153
7154 /// ProteoGrouper:PAG score: A score assigned to a protein group (modelled as ProteinAmbiguityGroup in mzIdentML), based on all summed peptide level scores that have been assigned to the group as unique or razor peptides.
7156
7157 /// mzidLib: A library of Java routines for manipulating mzIdentML files.
7158 MS_mzidLib = 1002237,
7159
7160 /// mzidLib:Omssa2Mzid: A converter for OMSSA OMX to mzIdentML.
7162
7163 /// mzidLib:Tandem2Mzid: A converter for Tandem XML to mzIdentML.
7165
7166 /// mzidLib:Csv2Mzid: A converter for CSV files (following OMSSA CSV style) to mzIdentML.
7168
7169 /// mzidLib:ProteoGrouper: A generic and parameterizable protein inference algorithm for mzIdentML files.
7171
7172 /// mzidLib:Thresholder: A routine for keeping only identifications passing a given threshold or setting passThreshold to true or false for SpectrumIdentificationItem or ProteinDetectionHypothesis in mzIdentML files.
7174
7175 /// mzidLib:Perform emPAI on mzid: A routine for adding emPAI quantitative values to an mzIdentML file.
7177
7178 /// mzidLib:FalseDiscoveryRate: A routine for calculating local FDR, q-value and FDRScore for mzIdentML files, based on a decoy search.
7180
7181 /// mzidLib:Mzidentml2Csv: A tool for converting mzIdentML files to CSV format.
7183
7184 /// mzidLib:CombineSearchEngines: A tool for combining results analysed in parallel in two or three search engines into a single mzIdentML file.
7186
7187 /// mzidLib:InsertMetaDataFromFasta: A tool for adding additional meta data from a FASTA file to DBSequence entries (sequence and description) in mzIdentML files.
7189
7190 /// SEQUEST:spscore: The SEQUEST result 'SpScore'.
7192
7193 /// SEQUEST:sprank: The SEQUEST result 'SpRank'.
7195
7196 /// SEQUEST:deltacnstar: The SEQUEST result 'DeltaCnStar'.
7198
7199 /// Comet: Comet open-source sequence search engine developed at the University of Washington.
7200 MS_Comet = 1002251,
7201
7202 /// Comet:xcorr: The Comet result 'XCorr'.
7204
7205 /// Comet:deltacn: The Comet result 'DeltaCn'.
7207
7208 /// Comet:deltacnstar: The Comet result 'DeltaCnStar'.
7210
7211 /// Comet:spscore: The Comet result 'SpScore'.
7213
7214 /// Comet:sprank: The Comet result 'SpRank'.
7216
7217 /// Comet:expectation value: The Comet result 'Expectation value'.
7219
7220 /// Comet:matched ions: The Comet result 'Matched Ions'.
7222
7223 /// Comet:total ions: The Comet result 'Total Ions'.
7225
7226 /// PSM:FDR threshold: False-discovery rate threshold for peptide-spectrum matches.
7228
7229 /// Byonic: Byonic search engine from Protein Metrics.
7230 MS_Byonic = 1002261,
7231
7232 /// Byonic:Score: The Byonic score is the primary indicator of PSM correctness. The Byonic score reflects the absolute quality of the peptide-spectrum match, not the relative quality compared to other candidate peptides. Byonic scores range from 0 to about 1000, with 300 a good score, 400 a very good score, and PSMs with scores over 500 almost sure to be correct.
7234
7235 /// Byonic:Delta Score: The drop in Byonic score from the top-scoring peptide to the next peptide with distinct sequence. In this computation, the same peptide with different modifications is not considered distinct.
7237
7238 /// Byonic:DeltaMod Score: The drop in Byonic score from the top-scoring peptide to the next peptide different in any way, including placement of modifications. DeltaMod gives an indication of whether modifications are confidently localized; DeltaMod over 10.0 means that there is high likelihood that all modification placements are correct.
7240
7241 /// Byonic:PEP: Byonic posterior error probability.
7242 MS_Byonic_PEP = 1002265,
7243
7244 /// Byonic:Peptide LogProb: The log p-value of the PSM. This is the log of the probability that the PSM with such a score and delta would arise by chance in a search of this size (the size of the protein database, as expanded by the modification rules). A log p-value of -3.0 should happen by chance on only one of a thousand spectra. Caveat: it is very hard to compute a p-value that works for all searches and all spectra, so read Byonic p-values with a certain amount of skepticism.
7246
7247 /// Byonic:Protein LogProb: The log p-value of the protein.
7249
7250 /// Byonic:Best LogProb: Best (most negative) log p-value of an individual PSM.
7252
7253 /// Byonic:Best Score: Best (largest) Byonic score of a PSM.
7255
7256 /// chromatography separation: A technique by which molecules are separated by chemical and physical properties such as hydrophobicity or vapour pressure.
7258
7259 /// liquid chromatography separation: Liquid chromatography (LC) is a separation technique in which the mobile phase is a liquid.
7261
7262 /// gas chromatography separation: Gas chromatography (GC) is a separation technique in which the mobile phase is a gas.
7264
7265 /// detector potential: Detector potential difference in volts.
7267
7268 /// SQ Detector 2: Waters quadrupole based SQ Detector 2.
7270
7271 /// Xevo G2-S Tof: Waters oa-ToF based Xevo G2-S Tof.
7273
7274 /// Xevo G2-S QTof: Waters oa-ToF based Xevo G2-S QTof.
7276
7277 /// AutoSpec Premier: Waters AutoSpec Premier magnetic sector instrument.
7279
7280 /// Pegasus III: LECO nominal mass resolution time-of-flight GC mass spectrometer.
7282
7283 /// maXis 4G: Bruker Daltonics' maXis 4G: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.
7284 MS_maXis_4G = 1002279,
7285
7286 /// compact: Bruker Daltonics' compact: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.
7287 MS_compact = 1002280,
7288
7289 /// SRM feature level quantitation: Selected Reaction Monitoring feature level quantitation.
7291
7292 /// SRM peptide level quantitation: Selected Reaction Monitoring peptide level quantitation.
7294
7295 /// SRM protein level quantitation: Selected Reaction Monitoring protein level quantitation.
7297
7298 /// SRM proteingroup level quantitation: Selected Reaction Monitoring proteingroup level quantitation.
7300
7301 /// Trans-Proteomic Pipeline: A suite of open source tools for the processing of MS2 proteomics data developed by the Seattle Proteome Center at the Institute for Systems Biology.
7303
7304 /// TPP (Trans-Proteomic Pipeline): A suite of open source tools for the processing of MS2 proteomics data developed by the Seattle Proteome Center at the Institute for Systems Biology.
7306
7307 /// Trans-Proteomic Pipeline software: A software program that is a component of the Trans-Proteomic Pipeline.
7309
7310 /// PeptideProphet: A program in the TPP that calculates PSM probabilities for MS2 proteomics data searched with any of the supported sequence or spectral library search engines via the pepXML format.
7312
7313 /// iProphet: A program in the TPP that calculates distinct peptide probabilities based on several lines of corroborating evidence including search results from multiple search engines via the pepXML format.
7314 MS_iProphet = 1002288,
7315
7316 /// ProteinProphet: A program in the TPP that calculates protein-level probabilities based on input PSM or peptide-level probabilities from PeptideProphet or iProphet. The output is written in the protXML format.
7318
7319 /// XPRESS: A program in the TPP that calculates PSM-level abundances based on 2-channel isotope-labelled data such as ICAT, SILAC, etc.
7320 MS_XPRESS = 1002290,
7321
7322 /// Libra: A program in the TPP that calculates PSM, peptide, and protein-level abundances based on N-channel isobaric label peptide data such as iTRAQ, TMT, etc.
7323 MS_Libra = 1002291,
7324
7325 /// PTMProphet: A program in the TPP that calculates PTM localization probabilities by re-analyzing the peaks that are available to distinguish between possible modification sites.
7326 MS_PTMProphet = 1002292,
7327
7328 /// Bruker Daltonics SCION series: Bruker Daltonics' SCION series.
7330
7331 /// Bruker Daltonics EVOQ series: Bruker Daltonics' EVOQ series.
7333
7334 /// SCION SQ: Bruker Daltonics' SCION SQ: GC-single quadrupole.
7335 MS_SCION_SQ = 1002295,
7336
7337 /// SCION TQ: Bruker Daltonics' SCION TQ: GC-triple quadrupole.
7338 MS_SCION_TQ = 1002296,
7339
7340 /// EVOQ Elite: Bruker Daltonics' EVOQ Elite: LC-triple quadrupole.
7341 MS_EVOQ_Elite = 1002297,
7342
7343 /// EVOQ Qube: Bruker Daltonics' EVOQ Qube: LC-triple quadrupole.
7344 MS_EVOQ_Qube = 1002298,
7345
7346 /// micrOTOF-Q III: Bruker Daltonics' micrOTOF-Q III: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.
7348
7349 /// amaZon Speed ETD: Bruker Daltonics' amaZon Speed ETD: ESI quadrupole ion trap, Nanospray, APCI, APPI, ETD, PTR, GC-APCI, CaptiveSpray.
7351
7352 /// amaZon Speed: Bruker Daltonics' amaZon ETD: ESI quadrupole ion trap, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.
7354
7355 /// Bruker Container format: Bruker Container raw file format.
7357
7358 /// Bruker Container nativeID format: Native identifier (UUID).
7360
7361 /// domain range: Domain range of a numerical value.
7363
7364 /// value between 0 and 1 inclusive: Value range for probabilities.
7366
7367 /// value greater than zero: Positive value range.
7369
7370 /// fragmentation ion type: Type of fragment ion based on where the backbone breaks, such as a y ion or a c ion.
7372
7373 /// fluorescence detector: A detector using a fluorescent signal after excitation with light.
7375
7376 /// Byonic: Peptide AbsLogProb: The absolute value of the log-base10 of the Byonic posterior error probability (PEP) of the PSM.
7378
7379 /// Byonic: Protein AbsLogProb: The absolute value of the log-base10 of the Byonic posterior error probability (PEP) of the protein.
7381
7382 /// Byonic: Peptide AbsLogProb2D: The absolute value of the log-base10 Byonic two-dimensional posterior error probability (PEP) of the PSM. The two-dimensional PEP takes into account protein ranking information as well as PSM information.
7384
7385 /// MS-Numpress linear prediction compression: Compression using MS-Numpress linear prediction compression.
7387
7388 /// MS-Numpress positive integer compression: Compression using MS-Numpress positive integer compression.
7390
7391 /// MS-Numpress short logged float compression: Compression using MS-Numpress short logged float compression.
7393
7394 /// consensus result: Indicates a consensus result from several search engine runs.
7396
7397 /// ProteomeDiscoverer:Amanda:high confidence threshold: Strict confidence probability score.
7399
7400 /// ProteomeDiscoverer:Amanda:middle confidence threshold: Relaxed confidence probability score.
7402
7403 /// ProteomeDiscoverer:automatic workload: Flag indicating automatic estimation of the workload level.
7405
7406 /// Amanda:AmandaScore: The Amanda score of the scoring function for a PSM.
7408
7409 /// ProteomeDiscoverer:max differential modifications: Maximum dynamic modifications per PSM.
7411
7412 /// ProteomeDiscoverer:max equal modifications: Maximum equal modifications per PSM.
7414
7415 /// ProteomeDiscoverer:min peptide length: Minimum peptide length.
7417
7418 /// ProteomeDiscoverer:max peptide length: Maximum peptide length.
7420
7421 /// ProteomeDiscoverer:max number neutral loss: Maximum number of same neutral losses.
7423
7424 /// ProteomeDiscoverer:max number neutral loss modifications: Max number of same neutral losses of modifications.
7426
7427 /// ProteomeDiscoverer:use flanking ions: Flag for usage of flanking ions.
7429
7430 /// ProteomeDiscoverer:max number of same modifs: The maximum number of possible equal modifications per PSM.
7432
7433 /// ProteomeDiscoverer:perform deisotoping: Defines whether a simple deisotoping shall be performed.
7435
7436 /// ProteomeDiscoverer:ion settings: Specifies the fragment ions and neutral losses that are calculated.
7438
7439 /// ProteomeDiscoverer:3. Static Modification: ProteomeDiscoverer's 3rd static post-translational modification (PTM) input parameter.
7441
7442 /// ProteomeDiscoverer:5. Dynamic Modification: ProteomeDiscoverer's 5th dynamic post-translational modification (PTM) input parameter.
7444
7445 /// lab head: The scientist responsible for personnel, grants, and instrumentation in a functional laboratory group.
7446 MS_lab_head = 1002332,
7447
7448 /// conversion software: Computer software primarily designed to convert data represented in one format to another format, sometimes with minor data alterations in the process.
7450
7451 /// ProCon: Java software designed to convert one of several proteomics identification results formats into mzIdentML or PRIDE XML.
7452 MS_ProCon = 1002334,
7453
7454 /// PRIDE Converter2: Java software designed to convert one of several proteomics identification results formats into PRIDE XML.
7456
7457 /// Amanda: Amanda scoring system for PSM identification.
7458 MS_Amanda = 1002336,
7459
7460 /// Andromeda: Andromeda is a peptide search engine.
7461 MS_Andromeda = 1002337,
7462
7463 /// Andromeda:score: The probability based score of the Andromeda search engine.
7465
7466 /// site:global FDR: Estimation of global false discovery rate of peptides with a post-translational modification.
7468
7469 /// ProteomeXchange project tag: Tag that can be added to a ProteomeXchange dataset, to enable the grouping of datasets. One tag can be used for indicating that a given dataset is part of a bigger project, like e.g. the Human Proteome Project.
7471
7472 /// second-pass peptide identification: A putative identified peptide found in a second-pass search of protein sequences selected from a first-pass search.
7474
7475 /// MZmine: A framework for differential analysis of mass spectrometry data.
7476 MS_MZmine = 1002342,
7477
7478 /// ion stability type: Stability type of the ion.
7480
7481 /// Maltcms: Modular Application Toolkit for Chromatography Mass-Spectrometry is an application framework mainly for developers.
7482 MS_Maltcms = 1002344,
7483
7484 /// PSM-level attribute: Attribute of a single peptide-spectrum match.
7486
7487 /// protein group-level identification attribute: Protein group level information.
7489
7490 /// PSM-level identification statistic: Identification confidence metric for a peptide spectrum match.
7492
7493 /// protein group-level identification statistic: Identification confidence metric for a protein group.
7495
7496 /// value greater than zero but less than or equal to one: Positive value range less than or equal to 1.
7498
7499 /// PSM-level global FDR: Estimation of the global false discovery rate of peptide spectrum matches.
7501
7502 /// PSM-level local FDR: Estimation of the local false discovery rate of peptide spectrum matches.
7504
7505 /// PSM-level p-value: Estimation of the p-value for peptide spectrum matches.
7507
7508 /// PSM-level e-value: Estimation of the e-value for peptide spectrum matches.
7510
7511 /// PSM-level q-value: Estimation of the q-value for peptide spectrum matches.
7513
7514 /// PSM-level FDRScore: mzidLibrary FDRScore for peptide spectrum matches.
7516
7517 /// PSM-level combined FDRScore: mzidLibrary Combined FDRScore for peptide spectrum matches specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools.
7519
7520 /// PSM-level probability: Probability that the reported peptide ion is truly responsible for some or all of the components of the specified mass spectrum.
7522
7523 /// search engine specific peptide sequence-level identification statistic: Search engine specific distinct peptide score.
7525
7526 /// peptide sequence-level local FDR: Estimation of the local false discovery rate for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry).
7528
7529 /// distinct peptide-level FDRScore: MzidLibrary FDRScore for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry).
7531
7532 /// distinct peptide-level combined FDRScore: Combined FDRScore for peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry) specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given peptide, used for integrating results from these distinct pools.
7534
7535 /// peptide sequence-level probability: Probability that the reported distinct peptide sequence (irrespective of mass modifications) has been correctly identified via the referenced PSMs.
7537
7538 /// search engine specific score for proteins: Search engine specific protein scores.
7540
7541 /// protein-level local FDR: Estimation of the local false discovery rate of proteins.
7543
7544 /// FDRScore for proteins: MzidLibrary FDRScore for proteins specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools.
7546
7547 /// combined FDRScore for proteins: MzidLibrary Combined FDRScore for proteins.
7549
7550 /// probability for proteins: Probability that a specific protein sequence has been correctly identified from the PSM and distinct peptide evidence, and based on the available protein sequences presented to the analysis software.
7552
7553 /// search engine specific score for protein groups: Search engine specific protein group scores.
7555
7556 /// protein group-level global FDR: Estimation of the global false discovery rate of protein groups.
7558
7559 /// protein group-level local FDR: Estimation of the local false discovery rate of protein groups.
7561
7562 /// protein group-level p-value: Estimation of the p-value for protein groups.
7564
7565 /// protein group-level e-value: Estimation of the e-value for protein groups.
7567
7568 /// protein group-level q-value: Estimation of the q-value for protein groups.
7570
7571 /// protein group-level FDRScore: mzidLibrary FDRScore for protein groups.
7573
7574 /// protein group-level combined FDRScore: mzidLibrary Combined FDRScore for proteins specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools.
7576
7577 /// protein group-level probability: Probability that at least one of the members of a group of protein sequences has been correctly identified from the PSM and distinct peptide evidence, and based on the available protein sequences presented to the analysis software.
7579
7580 /// ProteomeDiscoverer:Relaxed Score Threshold: Specifies the threshold value for relaxed scoring.
7582
7583 /// ProteomeDiscoverer:Strict Score Threshold: Specifies the threshold value for strict scoring.
7585
7586 /// ProteomeDiscoverer:Peptide Without Protein Cut Off Score: Cut off score for storing peptides that do not belong to a protein.
7588
7589 /// false localization rate: Estimation of the false localization rate for modification site assignment.
7591
7592 /// MALDI Solutions LC-MALDI: Software for automated LC-MALDI analysis and reporting.
7594
7595 /// Shimadzu MALDI-7090: Shimadzu MALDI-7090: MALDI-TOF-TOF.
7597
7598 /// SCiLS software: SCiLS software for data acquisition and analysis.
7600
7601 /// SCiLS Lab: SCiLS Lab software.
7602 MS_SCiLS_Lab = 1002384,
7603
7604 /// SCiLS Lab format: SCiLS Lab file format.
7606
7607 /// preprocessing software: Preprocessing software.
7609
7610 /// PIA: PIA - Protein Inference Algorithms, a toolbox for protein inference and identification analysis.
7611 MS_PIA = 1002387,
7612
7613 /// PIA XML format: A compilation of search engine results in the PIA XML format.
7615
7616 /// PIA workflow parameter: A parameter set for a single PIA analysis.
7618
7619 /// PIA:FDRScore calculated: Indicates whether the FDR score was calculated for the input file.
7621
7622 /// PIA:Combined FDRScore calculated: Indicates whether the combined FDR score was calculated for the PIA compilation.
7624
7625 /// PIA:PSM sets created: Indicates whether PSM sets were created.
7627
7628 /// PIA:used top identifications for FDR: The number of top identifications per spectrum used for the FDR calculation, 0 means all.
7630
7631 /// PIA:protein score: The score given to a protein by any protein inference.
7633
7634 /// PIA:protein inference: The used algorithm for the protein inference using PIA.
7636
7637 /// PIA:protein inference filter: A filter used by PIA for the protein inference.
7639
7640 /// PIA:protein inference scoring: The used scoring method for the protein inference using PIA.
7642
7643 /// PIA:protein inference used score: The used base score for the protein inference using PIA.
7645
7646 /// PIA:protein inference used PSMs: The method to determine the PSMs used for scoring by the protein inference.
7648
7649 /// PIA:filter: A filter used for the report generation.
7650 MS_PIA_filter = 1002400,
7651
7652 /// leading protein: At least one protein within each group should be annotated as a leading protein to indicate it has the strongest evidence, or approximately equal evidence as other group members.
7654
7655 /// non-leading protein: Zero to many proteins within each group should be annotated as non-leading to indicate that other proteins have stronger evidence.
7657
7658 /// group representative: An arbitrary and optional flag applied to exactly one protein per group to indicate it can serve as the representative of the group, amongst leading proteins, in effect serving as a tiebreaker for approaches that require exactly one group representative.
7660
7661 /// count of identified proteins: The number of proteins that have been identified, which must match the number of groups that pass the threshold in the file.
7663
7664 /// protein group-level result list attribute: Details describing a protein cluster.
7666
7667 /// count of identified clusters: The number of protein clusters that have been identified, which must match the number of clusters that pass the threshold in the file.
7669
7670 /// cluster identifier: An identifier applied to protein groups to indicate that they are linked by shared peptides.
7672
7673 /// number of distinct protein sequences: The number of protein clusters that have been identified, which must match the number of clusters that pass the threshold in the file.
7675
7676 /// marginally distinguished protein: Assigned to a non-leading protein that has some independent evidence to support its presence relative to the leading protein(s), e.g. the protein may have a unique peptide but not sufficient to be promoted as a leading protein of another group.
7678
7679 /// Anubis: Anubis software for selected reaction monitoring data.
7680 MS_Anubis = 1002410,
7681
7682 /// TraML format: The TraML format for transitions in SRM from the PSI. File extension '.TraML'.
7684
7685 /// total XIC area: Summed area of all the extracted ion chromatogram for the peptide (e.g. of all the transitions in SRM).
7687
7688 /// product background: The background area for the quantified transition.
7690
7691 /// postprocessing software: Postprocessing software.
7693
7694 /// protein group passes threshold: A Boolean attribute to determine whether the protein group has passed the threshold indicated in the file.
7696
7697 /// Orbitrap Fusion: Thermo Scientific Orbitrap Fusion.
7699
7700 /// Orbitrap Fusion ETD: Thermo Scientific Orbitrap Fusion with ETD.
7702
7703 /// TSQ Quantiva: Thermo Scientific TSQ Quantiva MS.
7705
7706 /// TSQ Endura: Thermo Scientific TSQ Endura MS.
7707 MS_TSQ_Endura = 1002419,
7708
7709 /// PASSEL experiment URI: URI that allows access to a PASSEL experiment.
7711
7712 /// Paragon input parameter: Search engine input parameters specific to Paragon.
7714
7715 /// Paragon: sample type: The Paragon method setting indicating the type of sample at the high level, generally meaning the type of quantitation labelling or lack thereof. 'Identification' is indicated for samples without any labels for quantitation.
7717
7718 /// Paragon: cysteine alkylation: The Paragon method setting indicating the actual cysteine alkylation agent; 'None' is indicated if there was no cysteine alkylation.
7720
7721 /// Paragon: instrument setting: The Paragon method setting (translating to a large number of lower level settings) indicating the instrument used or a category of instrument.
7723
7724 /// Paragon: search effort: The Paragon method setting that controls the two major modes of search effort of the Paragon algorithm: the Rapid mode uses a conventional database search, while the Thorough mode uses a hybrid search, starting with the same approach as the Rapid mode but then follows it with a separate tag-based approach enabling a more extensive search.
7726
7727 /// Paragon: ID focus: A Paragon method setting that allows the inclusion of large sets of features such as biological modification or substitutions.
7729
7730 /// Paragon: FDR analysis: The Paragon method setting that controls whether FDR analysis is conducted.
7732
7733 /// Paragon: quantitation: The Paragon method setting that controls whether quantitation analysis is conducted.
7735
7736 /// Paragon: background correction: The Paragon method setting that controls whether the 'Background Correction' analysis is conducted; this processing estimates a correction to the attenuation in extremity ratios that can occur in isobaric quantatitation workflows on complex samples.
7738
7739 /// Paragon: bias correction: The Paragon method setting that controls whether 'Bias Correction' is invoked in quantitation analysis; this correction is a normalization to set the central tendency of protein ratios to unity.
7741
7742 /// Paragon: channel to use as denominator in ratios: The Paragon method setting that controls which label channel is used as the denominator in calculating relative expression ratios.
7744
7745 /// search engine specific input metadata: Search engine specific metadata that are not user-controlled settings.
7747
7748 /// Paragon: modified data dictionary or parameter translation: This metric detects if any changes have been made to the originally installed key control files for the software; if no changes have been made, then the software version and settings are sufficient to enable exact reproduction; if changes have been made, then the modified ParameterTranslation- and ProteinPilot DataDictionary-XML files much also be provided in order to exactly reproduce a result.
7750
7751 /// number of spectra searched: Number of spectra in a search.
7753
7754 /// data processing start time: The time that a data processing action was started.
7756
7757 /// Paragon: digestion: The Paragon method setting indicating the actual digestion agent - unlike other search tools, this setting does not include options that control partial specificity like 'semitrypsin'; if trypsin is used, trypsin is set, and partially conforming peptides are found in the Thorough mode of search; 'None' should be indicated only if there was really no digestion done.
7759
7760 /// number of decoy sequences: The number of decoy sequences, if the concatenated target-decoy approach is used.
7762
7763 /// spectrum identification list result details: Information about the list of PSMs (SpectrumIdentificationList).
7765
7766 /// final PSM list: A flag on a list of PSMs (SpectrumIdentificationList) to indicate that this is the final set of identifications to be interpreted by consuming software. Amongst the set of SpectrumIdentificationList(s) that are flagged with the term, each spectrum must not be referenced from more than one SpectrumIdentificationResult.
7768
7769 /// intermediate PSM list: A flag on a list of PSMs (SpectrumIdentificationList) to indicate that this is not the final set of identifications to be interpreted by consuming software. This term should be used when results are provided from multiple search engines for the results from each search engine before they are combined to give consensus identifications. Amongst the set of SpectrumIdentificationList(s) that are flagged with the term, each spectrum may be referenced from more than one SpectrumIdentificationResult.
7771
7772 /// Andi-MS format: AIA Analytical Data Interchange file format for mass spectrometry data.
7774
7775 /// chromatograph file format: The format of the chromatography file being used. This could be a instrument or vendor specific proprietary file format or a converted open file format.
7777
7778 /// Andi-CHROM format: AIA Analytical Data Interchange file format for chromatography data.
7780
7781 /// 6420 Triple Quadrupole LC/MS: The 6420 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer.
7783
7784 /// 6460 Triple Quadrupole LC/MS: The 6460 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer. It is similar to the 6420 but adds Agilent Jet Stream (AJS) technology to increase sensitivity.
7786
7787 /// 6490 Triple Quadrupole LC/MS: The 6490 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer. It is similar to the 6420 but adds the Agilent iFunnel technology to increase sensitivity.
7789
7790 /// Paragon:special factor: The Paragon method setting indicating a list of one or more 'special factors', which generally capture secondary effects (relative to other settings) as a set of probabilities of modification features that override the assumed levels. For example the 'gel-based ID' special factor causes an increase probability of oxidation on several resides because of the air exposure impact on a gel, in addition to other effects.
7792
7793 /// PEAKS:inChorusPeptideScore: The PEAKS inChorus peptide score.
7795
7796 /// PEAKS:inChorusProteinScore: The PEAKS inChorus protein score.
7798
7799 /// param: b ion-H3PO4 DEPRECATED: Ion b-H3PO4: b ion with lost phosphoric acid.
7801
7802 /// param: y ion-H3PO4 DEPRECATED: Ion y-H3PO4: y ion with lost phosphoric acid.
7804
7805 /// Maui: The Maltcms Graphical User Interface.
7806 MS_Maui = 1002452,
7807
7808 /// No fixed modifications searched: No fixed modifications are included as a parameter for the search, and therefore they are not reported.
7810
7811 /// No variable modifications searched: No variable modifications are included as a parameter for the search, and therefore they are not reported.
7813
7814 /// H2O neutral loss: Neutral loss of water.
7816
7817 /// NH3 neutral loss: Neutral loss of ammonia.
7819
7820 /// H3PO4 neutral loss: Neutral loss of phosphoric acid.
7822
7823 /// PeptideShaker: PeptideShaker is a software for the interpretation of proteomics identification results.
7825
7826 /// MS Amanda csv format: MS Amanda csv output format.
7828
7829 /// protein group-level global FNR: Estimation of the global false negative rate of protein groups.
7831
7832 /// protein group-level confidence: Estimation of the global confidence of protein groups.
7834
7835 /// peptide sequence-level global FNR: Estimation of the global false negative rate for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry).
7837
7838 /// peptide sequence-level global confidence: Estimation of the global confidence for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry).
7840
7841 /// PSM-level global FNR: Estimation of the global false negative rate of peptide spectrum matches.
7843
7844 /// PSM-level global confidence: Estimation of the global confidence of peptide spectrum matches.
7846
7847 /// PeptideShaker PSM score: The probability based PeptideShaker PSM score.
7849
7850 /// PeptideShaker PSM confidence: The probability based PeptideShaker PSM confidence.
7852
7853 /// PeptideShaker peptide score: The probability based PeptideShaker peptide score.
7855
7856 /// PeptideShaker peptide confidence: The probability based PeptideShaker peptide confidence.
7858
7859 /// PeptideShaker protein group score: The probability based PeptideShaker protein group score.
7861
7862 /// PeptideShaker protein group confidence: The probability based PeptideShaker protein group confidence.
7864
7865 /// trap-type collision-induced dissociation: A collision-induced dissociation process that occurs in a trap-type collision cell.
7867
7868 /// ion series considered in search: The description of the ion fragment series (including charges and neutral losses) that are considered by the search engine.
7870
7871 /// ProteoAnnotator:non-canonical gene model score: The sum of peptide-level scores for peptides mapped only to non-canonical gene models within the group.
7873
7874 /// ProteoAnnotator:count alternative peptides: The count of the number of peptide sequences mapped to non-canonical gene models only within the group.
7876
7877 /// ion mobility drift time: Drift time of an ion or spectrum of ions as measured in an ion mobility mass spectrometer. This time might refer to the central value of a bin into which all ions within a narrow range of drift time have been aggregated.
7879
7880 /// mean drift time array: Array of drift times, averaged from a matrix of binned m/z and drift time values, corresponding to spectrum of individual peaks encoded with an m/z array.
7882
7883 /// mean charge array: Array of mean charge values where the mean charge is calculated as a weighted mean of the charges of individual peaks that are aggregated into a processed spectrum.
7885
7886 /// regular expression: Regular expression.
7888
7889 /// regular expression for a digital object identifier (DOI): (10[.][0-9]\{4,\}(?:[.][0-9]+)*/(?:(?![\"&\'<>])[^ \t\\r\n\\v\\f])+).
7891
7892 /// higher energy beam-type collision-induced dissociation: A collision-induced dissociation process wherein the projectile ion has the translational energy higher than approximately 1000 eV.
7894
7895 /// statistical threshold: Estimated statistical threshold.
7897
7898 /// PSM-level statistical threshold: Estimated statistical threshold at PSM-level.
7900
7901 /// peptide-level statistical threshold: Estimated statistical threshold at peptide-level.
7903
7904 /// protein-level statistical threshold: Estimated statistical threshold at protein-level.
7906
7907 /// protein group-level statistical threshold: Estimated statistical threshold at protein group-level.
7909
7910 /// MassIVE dataset identifier: Dataset identifier issued by the MassIVE repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication.
7912
7913 /// MassIVE dataset URI: URI that allows the access to one dataset in the MassIVE repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication.
7915
7916 /// special processing: Details describing a special processing.
7918
7919 /// peptide-level scoring: Peptide-level scoring performed.
7921
7922 /// modification localization scoring: Modification localization scoring performed.
7924
7925 /// consensus scoring: Consensus multiple search engine approach performed.
7927
7928 /// sample pre-fractionation: Sample pre-fractionation performed.
7930
7931 /// cross-linking search: Cross-linking search performed.
7933
7934 /// no special processing: No special processing performed.
7936
7937 /// group PSMs by sequence: Group PSMs by distinct peptide sequence ignoring modifications.
7939
7940 /// group PSMs by sequence with modifications: Group PSMs by distinct peptide sequence with taking modifications into account.
7942
7943 /// group PSMs by sequence with modifications and charge: Group PSMs by distinct peptide sequence with taking modifications and charge into account.
7945
7946 /// peptide level score: Peptide level score.
7948
7949 /// peptide passes threshold: A Boolean attribute to determine whether the peptide has passed the threshold indicated in the file.
7951
7952 /// no PSM threshold: Indicating that no PSM threshold was used.
7954
7955 /// no peptide-level threshold: Indicating that no peptide-level threshold was used.
7957
7958 /// PSM is used for peptide-level scoring: Flags a PSM that it is used for peptide-level scoring.
7960
7961 /// modification index: The order of modifications to be referenced elsewhere in the document.
7963
7964 /// regular expression for modification localization scoring: ([:digit:]+:[0|1]\{1\}.[:digit:]+[Ee]{0,1}[+-]{0,1}[:digit:]*:[:digit:]+[|]\{1\}[:digit:]+:(true|false)\{1\}).
7966
7967 /// modification position score: Modification position score.
7969
7970 /// modification rescoring:false localization rate: Mod position score: false localization rate.
7972
7973 /// cross-linking attribute: Cross-linking attribute.
7975
7976 /// cross-link donor: The Cross-linking donor, assigned according to the following rules: the export software SHOULD use the following rules to choose the cross-link donor as the: longer peptide, then higher peptide neutral mass, then alphabetical order.
7978
7979 /// cross-link acceptor: Cross-linking acceptor, assigned according to the following rules: the export software SHOULD use the following rules to choose the cross-link donor as the: longer peptide, then higher peptide neutral mass, then alphabetical order.
7981
7982 /// cross-link spectrum identification item: Cross-linked spectrum identification item.
7984
7985 /// cross-linking score: Cross-linking scoring value.
7987
7988 /// molecules per cell: The absolute abundance of protein in a cell.
7990
7991 /// absolute quantitation analysis: Absolute quantitation analysis.
7993
7994 /// internal peptide reference used: States whether an internal peptide reference is used or not in absolute quantitation analysis.
7996
7997 /// internal protein reference used: States whether an internal protein reference is used or not in absolute quantitation analysis.
7999
8000 /// internal reference abundance: The absolute abundance of the spiked in reference peptide or protein used for absolute quantitation analysis.
8002
8003 /// Progenesis:protein group normalised abundance: The data type normalised abundance for protein groups produced by Progenesis LC-MS.
8005
8006 /// Progenesis:protein group raw abundance: The data type raw abundance for protein groups produced by Progenesis LC-MS.
8008
8009 /// peptide group ID: Peptide group identifier for peptide-level stats.
8011
8012 /// mass spectrometry imaging: A technique in which mass spectra are acquired in a spatially resolved manner. This is typically achieved by scanning a laser or primary ion beam over a sample and acquiring a mass spectrum at each position.
8014
8015 /// ProteomeDiscoverer:1. Static Terminal Modification: Determine 1st static terminal post-translational modifications (PTMs).
8017
8018 /// Q Exactive HF: Thermo Scientific Q Exactive.
8020
8021 /// PepFinder: Thermo Scientific PepFinder BioPharma analysis software.
8022 MS_PepFinder = 1002524,
8023
8024 /// TSQ 8000 Evo: Thermo Scientific TSQ 8000 Evo MS.
8026
8027 /// Exactive Plus: Thermo Scientific Exactive Plus MS.
8029
8030 /// instrument specific scan attribute: Instrument specific scan properties that are associated with a value.
8032
8033 /// synchronous prefilter selection: Synchronous prefilter selection.
8035
8036 /// SPS (synchronous prefilter selection): Synchronous prefilter selection.
8038
8039 /// resolution array: A data array of resolution values.
8041
8042 /// baseline array: A data array of signal baseline values (the signal in the absence of analytes).
8044
8045 /// UIMF format: SQLite-based file format created at Pacific Northwest National Lab. It stores an intermediate analysis of ion-mobility mass spectrometry data.
8047
8048 /// UIMF nativeID format: Native format defined by frame=xsd:nonNegativeInteger scan=xsd:nonNegativeInteger frameType=xsd:nonNegativeInteger.
8050
8051 /// TripleTOF 6600: SCIEX TripleTOF 6600, a quadrupole - quadrupole - time-of-flight mass spectrometer.
8053
8054 /// ProLuCID:xcorr: The ProLuCID result 'XCorr'.
8056
8057 /// ProLuCID:deltacn: The ProLuCID result 'DeltaCn'.
8059
8060 /// D-Score: D-Score for PTM site location at the PSM-level.
8061 MS_D_Score = 1002536,
8062
8063 /// MD-Score: MD-Score for PTM site location at the PSM-level.
8064 MS_MD_Score = 1002537,
8065
8066 /// PTM localization confidence metric: Localization confidence metric for a post translational modification (PTM).
8068
8069 /// PeptideShaker PTM confidence type: PeptideShaker quality criteria for the confidence of PTM localizations.
8071
8072 /// PeptideShaker PSM confidence type: PeptideShaker quality criteria for the confidence of PSM's.
8074
8075 /// PeptideShaker peptide confidence type: PeptideShaker quality criteria for the confidence of peptide identifications.
8077
8078 /// PeptideShaker protein confidence type: PeptideShaker quality criteria for the confidence of protein identifications.
8080
8081 /// xiFDR: Target/Decoy based FDR estimation for cross-linking peptide-identifications.
8082 MS_xiFDR = 1002543,
8083
8084 /// xi: Search engine for cross-linked peptides.
8085 MS_xi = 1002544,
8086
8087 /// xi:score: The xi result 'Score'.
8088 MS_xi_score = 1002545,
8089
8090 /// Skyline mzQuantML converter: A software package to convert Skyline report to mzQuantML.
8092
8093 /// normalized spectral abundance factor: A normalized spectral abundance factor (NSAF).
8095
8096 /// distributed normalized spectral abundance factor: A distributed normalized spectral abundance factor (dNSAF).
8098
8099 /// PTM localization distinct peptide-level statistic: Statistic to convey the confidence of the localization of an amino acid modification on a peptide sequence.
8101
8102 /// peptide:phosphoRS score: phosphoRS score for PTM site location at the peptide-level.
8104
8105 /// peptide:Ascore: A-score for PTM site location at the peptide-level.
8107
8108 /// peptide:H-Score: H-Score for peptide phosphorylation site location at the peptide-level.
8110
8111 /// peptide:D-Score: D-Score for PTM site location at the peptide-level.
8113
8114 /// peptide:MD-Score: MD-Score for PTM site location at the peptide-level.
8116
8117 /// PTM localization score threshold: Threshold for PTM site location score.
8119
8120 /// Ascore threshold: Threshold for Ascore PTM site location score.
8122
8123 /// D-Score threshold: Threshold for D-score PTM site location score.
8125
8126 /// MD-Score threshold: Threshold for MD-score PTM site location score.
8128
8129 /// H-Score threshold: Threshold for H-score PTM site location score.
8131
8132 /// DeBunker:score threshold: Threshold for DeBunker PTM site location score.
8134
8135 /// Mascot:PTM site assignment confidence threshold: Threshold for Mascot PTM site assignment confidence.
8137
8138 /// MSQuant:PTM-score threshold: Threshold for MSQuant:PTM-score.
8140
8141 /// MaxQuant:PTM Score threshold: Threshold for MaxQuant:PTM Score.
8143
8144 /// MaxQuant:P-site localization probability threshold: Threshold for MaxQuant:P-site localization probability.
8146
8147 /// MaxQuant:PTM Delta Score threshold: Threshold for MaxQuant:PTM Delta Score.
8149
8150 /// MaxQuant:Phospho (STY) Probabilities threshold: Threshold for MaxQuant:Phospho (STY) Probabilities.
8152
8153 /// phosphoRS score threshold: Threshold for phosphoRS score.
8155
8156 /// phosphoRS site probability threshold: Threshold for phosphoRS site probability.
8158
8159 /// ProteomeDiscoverer:Number of Spectra Processed At Once: Number of spectra processed at once in a ProteomeDiscoverer search.
8161
8162 /// sequence multiply subsumable protein: A protein for which the matched peptide sequences are the same, or a subset of, the matched peptide sequences for two or more other proteins combined. These other proteins need not all be in the same group.
8164
8165 /// spectrum multiply subsumable protein: A protein for which the matched spectra are the same, or a subset of, the matched spectra for two or more other proteins combined. These other proteins need not all be in the same group.
8167
8168 /// protein detection statistical threshold: Estimated statistical threshold used for protein detection.
8170
8171 /// spectrum identification statistical threshold: Estimated statistical threshold used for spectrum identification.
8173
8174 /// ASAPRatio: A program in the TPP that calculates PSM, peptide, and protein-level abundances based on 2-channel isotope-labelled data such as ICAT, SILAC, etc.
8175 MS_ASAPRatio = 1002574,
8176
8177 /// Tide: Tide open-source sequence search program developed at the University of Washington.
8178 MS_Tide = 1002575,
8179
8180 /// Andromeda result format: Andromeda result file output format.
8182
8183 /// 2000 QTRAP: SCIEX 2000 QTRAP.
8184 MS_2000_QTRAP = 1002577,
8185
8186 /// 2500 QTRAP: SCIEX 2500 QTRAP.
8187 MS_2500_QTRAP = 1002578,
8188
8189 /// 3500 QTRAP: SCIEX 3500 QTRAP.
8190 MS_3500_QTRAP = 1002579,
8191
8192 /// QTRAP 4500: SCIEX QTRAP 4500.
8193 MS_QTRAP_4500 = 1002580,
8194
8195 /// QTRAP 6500: SCIEX QTRAP 6500.
8196 MS_QTRAP_6500 = 1002581,
8197
8198 /// QTRAP 6500+: SCIEX QTRAP 6500+.
8200
8201 /// TripleTOF 4600: SCIEX TripleTOF 4600 time-of-flight mass spectrometer.
8203
8204 /// TripleTOF 5600+: SCIEX TripleTOF 5600+ time-of-flight mass spectrometer.
8206
8207 /// API 100: Applied Biosystems/MDS SCIEX API 100 MS.
8208 MS_API_100 = 1002585,
8209
8210 /// API 100LC: Applied Biosystems/MDS SCIEX API 100LC MS.
8211 MS_API_100LC = 1002586,
8212
8213 /// API 165: Applied Biosystems/MDS SCIEX API 165 MS.
8214 MS_API_165 = 1002587,
8215
8216 /// API 300: Applied Biosystems/MDS SCIEX API 300 MS.
8217 MS_API_300 = 1002588,
8218
8219 /// API 350: Applied Biosystems/MDS SCIEX API 350 MS.
8220 MS_API_350 = 1002589,
8221
8222 /// API 365: Applied Biosystems/MDS SCIEX API 365 MS.
8223 MS_API_365 = 1002590,
8224
8225 /// Triple Quad 3500: SCIEX Triple Quad 3500.
8227
8228 /// Triple Quad 4500: SCIEX Triple Quad 4500.
8230
8231 /// Triple Quad 5500: SCIEX Triple Quad 5500.
8233
8234 /// Triple Quad 6500: SCIEX Triple Quad 6500.
8236
8237 /// Triple Quad 6500+: SCIEX Triple Quad 6500+.
8239
8240 /// ProLuCID: The SEQUEST-like sequence search engine ProLuCID, developed in the Yates Lab at the Scripps Research Institute.
8241 MS_ProLuCID = 1002596,
8242
8243 /// MS1 format: MS1 file format for MS1 spectral data.
8244 MS_MS1_format = 1002597,
8245
8246 /// DTASelect: Analysis software designed to reassemble the SEQUEST peptide identifications and to highlight the most significant matches.
8247 MS_DTASelect = 1002598,
8248
8249 /// splash key: Spectral Hash key, an unique identifier for spectra.
8250 MS_splash_key = 1002599,
8251
8252 /// PRIDE XML: Internal data and submission format of the PRIDE database.
8253 MS_PRIDE_XML = 1002600,
8254
8255 /// mzTab: Tabular result format for proteomics and metabolomics experiments.
8256 MS_mzTab = 1002601,
8257
8258 /// quantification reagent: Reagent used in labeled quantification methods.
8260
8261 /// ICAT reagent: Isotope coded affinity tag reagent.
8263
8264 /// ICAT heavy reagent: The name of the sample labelled with the heavy ICAT label.
8266
8267 /// ICAT light reagent: The name of the sample labelled with the light ICAT label.
8269
8270 /// ICPL reagent: Isotope coded protein labeling reagent.
8272
8273 /// ICPL reagent 0: The name of the sample labelled with the ICPL reagent 0.
8275
8276 /// ICPL reagent 4: The name of the sample labelled with the ICPL reagent 4.
8278
8279 /// ICPL reagent 6: The name of the sample labelled with the ICPL reagent 6.
8281
8282 /// ICPL reagent 10: The name of the sample labelled with the ICPL reagent 10.
8284
8285 /// SILAC reagent: Stable isotope labeling with amino acids in cell culture reagent.
8287
8288 /// SILAC heavy reagent: The name of the sample labelled with the heavy SILAC label.
8290
8291 /// SILAC medium reagent: The name of the sample labelled with the medium SILAC label.
8293
8294 /// SILAC light reagent: The name of the sample labelled with the light SILAC label.
8296
8297 /// TMT reagent: Tandem mass tag reagent used in TMT, glycoTMT, iodoTMT, aminoxyTMT or hydrazideTMT isobaric labeling.
8299
8300 /// TMT reagent 126: The name of the sample labelled with the TMT reagent 126.
8302
8303 /// TMT reagent 127: The name of the sample labelled with the TMT reagent 127.
8305
8306 /// TMT reagent 128: The name of the sample labelled with the TMT reagent 128.
8308
8309 /// TMT reagent 129: The name of the sample labelled with the TMT reagent 129.
8311
8312 /// TMT reagent 130: The name of the sample labelled with the TMT reagent 130.
8314
8315 /// TMT reagent 131: The name of the sample labelled with the TMT reagent 131.
8317
8318 /// iTRAQ reagent: Isobaric tag for relative and absolute quantitation (iTRAQ or iTRAQH) reagent.
8320
8321 /// iTRAQ reagent 113: The name of the sample labelled with the iTRAQ reagent 113.
8323
8324 /// iTRAQ reagent 114: The name of the sample labelled with the iTRAQ reagent 114.
8326
8327 /// iTRAQ reagent 115: The name of the sample labelled with the iTRAQ reagent 115.
8329
8330 /// iTRAQ reagent 116: The name of the sample labelled with the iTRAQ reagent 116.
8332
8333 /// iTRAQ reagent 117: The name of the sample labelled with the iTRAQ reagent 117.
8335
8336 /// iTRAQ reagent 118: The name of the sample labelled with the iTRAQ reagent 118.
8338
8339 /// iTRAQ reagent 119: The name of the sample labelled with the iTRAQ reagent 119.
8341
8342 /// iTRAQ reagent 121: The name of the sample labelled with the iTRAQ reagent 121.
8344
8345 /// Electron-Transfer/Higher-Energy Collision Dissociation (EThcD): A dissociation process combining electron-transfer and higher-energy collision dissociation (EThcD). It combines ETD (reaction time) followed by HCD (activation energy).
8347
8348 /// EThcD (Electron-Transfer/Higher-Energy Collision Dissociation (EThcD)): A dissociation process combining electron-transfer and higher-energy collision dissociation (EThcD). It combines ETD (reaction time) followed by HCD (activation energy).
8350
8351 /// jPOST dataset identifier: Dataset identifier issued by the jPOST repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication.
8353
8354 /// jPOST dataset URI: URI that allows the access to one dataset in the jPOST repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication.
8356
8357 /// Q Exactive Plus: Thermo Scientific Q Exactive Plus.
8359
8360 /// proteogenomics search: Proteogenomics search performed.
8362
8363 /// proteogenomics attribute: Proteogenomics attribute.
8365
8366 /// chromosome name: The name or number of the chromosome to which a given peptide has been mapped.
8368
8369 /// chromosome strand: The strand (+ or -) to which the peptide has been mapped.
8371
8372 /// peptide start on chromosome: The overall start position on the chromosome to which a peptide has been mapped i.e. the position of the first base of the first codon, using a zero-based counting system.
8374
8375 /// peptide end on chromosome: The overall end position on the chromosome to which a peptide has been mapped i.e. the position of the third base of the last codon, using a zero-based counting system.
8377
8378 /// peptide exon count: The number of exons to which the peptide has been mapped.
8380
8381 /// peptide exon nucleotide sizes: A comma separated list of the number of DNA bases within each exon to which a peptide has been mapped. Assuming standard operation of a search engine, the peptide exon sizes should sum to exactly three times the peptide length.
8383
8384 /// peptide start positions on chromosome: A comma separated list of start positions within exons to which the peptide has been mapped, relative to peptide-chromosome start, assuming a zero-based counting system. The first value MUST match the value in peptide start on chromosome.
8386
8387 /// genome reference version: The reference genome and versioning string as used for mapping. All coordinates are within this frame of reference.
8389
8390 /// MSDK: Mass Spectrometry Development Kit (MSDK) is a Java library of algorithms for processing of mass spectrometry data.
8391 MS_MSDK = 1002645,
8392
8393 /// native spectrum identifier format, combined spectra: Describes how the native spectrum identifiers that have been combined prior to searching or interpretation are formated.
8395
8396 /// nativeID format, combined spectra (native spectrum identifier format, combined spectra): Describes how the native spectrum identifiers that have been combined prior to searching or interpretation are formated.
8398
8399 /// Thermo nativeID format, combined spectra: Thermo comma separated list of spectra that have been combined prior to searching or interpretation.
8401
8402 /// Waters nativeID format, combined spectra: Waters comma separated list of spectra that have been combined prior to searching or interpretation.
8404
8405 /// WIFF nativeID format, combined spectra: WIFF comma separated list of spectra that have been combined prior to searching or interpretation.
8407
8408 /// Bruker/Agilent YEP nativeID format, combined spectra: Bruker/Agilent comma separated list of spectra that have been combined prior to searching or interpretation.
8410
8411 /// Bruker BAF nativeID format, combined spectra: Bruker BAF comma separated list of spectra that have been combined prior to searching or interpretation.
8413
8414 /// Bruker FID nativeID format, combined spectra: Bruker FID comma separated list of spectra that have been combined prior to searching or interpretation.
8416
8417 /// multiple peak list nativeID format, combined spectra: Comma separated list of spectra that have been combined prior to searching or interpretation.
8419
8420 /// single peak list nativeID format, combined spectra: Comma separated list of spectra that have been combined prior to searching or interpretation.
8422
8423 /// scan number only nativeID format, combined spectra: Comma separated list of spectra that have been combined prior to searching or interpretation.
8425
8426 /// spectrum identifier nativeID format, combined spectra: Comma separated list of spectra that have been combined prior to searching or interpretation.
8428
8429 /// mzML unique identifier, combined spectra: Comma separated list of spectra that have been combined prior to searching or interpretation.
8431
8432 /// identification parameter: Identification parameter for the search engine run.
8434
8435 /// UniProtKB text sequence format: Text-based format used by UniProtKB for sequence entries.
8437
8438 /// UniProtKB XML sequence format: XML-based format used by UniProtKB for sequence entries.
8440
8441 /// Morpheus: Morpheus search engine.
8442 MS_Morpheus = 1002661,
8443
8444 /// Morpheus:Morpheus score: Morpheus score for PSMs.
8446
8447 /// Morpheus:summed Morpheus score: Summed Morpheus score for protein groups.
8449
8450 /// interaction score derived from cross-linking: Parent term for interaction scores derived from cross-linking.
8452
8453 /// regular expression for interaction scores derived from cross-linking: ([:digit:]+[.][a|b]:([:digit:]+|null):[:digit:]+[.][:digit:]+([Ee][+-][0-9]+)*:(true|false]\{1\})).
8455
8456 /// impact II: Bruker Daltonics' impact II.
8457 MS_impact_II = 1002666,
8458
8459 /// impact HD: Bruker Daltonics' impact HD.
8460 MS_impact_HD = 1002667,
8461
8462 /// frag: iTRAQ 4plex reporter ion: Standard reporter ion for iTRAQ 4Plex. The value slot holds the integer mass of the iTRAQ 4Plex reporter ion, e.g. 114.
8464
8465 /// frag: iTRAQ 8plex reporter ion: Standard reporter ion for iTRAQ 8Plex. The value slot holds the integer mass of the iTRAQ 8Plex reporter ion, e.g. 113.
8467
8468 /// frag: TMT reporter ion: Standard reporter ion for TMT. The value slot holds the integer mass of the TMT reporter ion and can be suffixed with either N or C, indicating whether the mass difference is encoded at a Nitrogen or Carbon atom, e.g. 127N.
8470
8471 /// frag: TMT ETD reporter ion: Standard reporter ion for TMT with ETD fragmentation. The value slot holds the integer mass of the TMT ETD reporter ion and can be suffixed with either N or C, indicating whether the mass difference is encoded at a Nitrogen or Carbon atom, e.g. 127C.
8473
8474 /// no modification threshold: No statistical threshold for accepting or rejecting that a modification position.
8476
8477 /// OpenXQuest: Cross-Linking MS search engine.
8478 MS_OpenXQuest = 1002673,
8479
8480 /// X500R QTOF: SCIEX X500R QTOF, a quadrupole - quadrupole - time-of-flight mass spectrometer.
8481 MS_X500R_QTOF = 1002674,
8482
8483 /// cross-linking result details: This subsection describes terms which can describe details of cross-linking results.
8485
8486 /// protein-pair-level global FDR: Estimation of the global false discovery rate of proteins-pairs in cross-linking experiments.
8488
8489 /// residue-pair-level global FDR: Estimation of the global false discovery rate of residue-pairs in cross-linking experiments.
8491
8492 /// supplemental beam-type collision-induced dissociation: A supplemental collision-induced dissociation process that occurs in a beam-type collision cell in addition to another primary type of dissociation.
8494
8495 /// supplemental collision-induced dissociation: The dissociation of an ion after supplemental collisional excitation.
8497
8498 /// supplemental collision energy: Energy for an ion experiencing supplemental collision with a stationary gas particle resulting in dissociation of the ion.
8500
8501 /// OpenXQuest:combined score: OpenXQuest's combined score for a cross-link spectrum match.
8503
8504 /// OpenXQuest:xcorr xlink: OpenXQuest's cross-correlation of cross-linked ions subscore.
8506
8507 /// OpenXQuest:xcorr common: OpenXQuest's cross-correlation of unlinked ions subscore.
8509
8510 /// OpenXQuest:match-odds: OpenXQuest's match-odds subscore.
8512
8513 /// OpenXQuest:intsum: OpenXQuest's sum of matched peak intensity subscore.
8515
8516 /// OpenXQuest:wTIC: OpenXQuest's weighted percent of total ion current subscore.
8518
8519 /// analysis attribute: Attribute of an item in the result of mass spectrometry proteomics data analysis.
8521
8522 /// PTM localization attribute: Statistic derived from a post-translational modification localization analysis.
8524
8525 /// PTM localization single result statistic: Statistic for a single item derived from a post-translational modification localization analysis.
8527
8528 /// PTM localization result list statistic: Statistic for all items derived from a post-translational modification localization analysis.
8530
8531 /// global FLR: Global false localization rate for all localizations in a dataset.
8532 MS_global_FLR = 1002691,
8533
8534 /// local FLR at threshold: Local false localization rate for the bottom item in list of localizations sorted from most to least confident.
8536
8537 /// identification attribute: Attribute of an identification item in the result of mass spectrometry proteomics data analysis.
8539
8540 /// single identification result attribute: Attribute of a single identification item (as opposed to a list) in the result of mass spectrometry proteomics data analysis.
8542
8543 /// frag: isobaric label ion: Fragment ion corresponding to an isobaric label artifact.
8545
8546 /// secondary isotope peak: Fragment ion is an isotopic peak other than that monoisotopic peak. This is used in conjuction with another ion type, such as frag: y ion.
8548
8549 /// protein cluster identification attribute: An attribute of the protein cluster concept as used in mzIdentML.
8551
8552 /// result list attribute: General property of an entire result list.
8554
8555 /// PSM-level result list attribute: General property of the list of all PSMs.
8557
8558 /// PSM-level result list statistic: Statistic pertaining to the full list of all PSMs.
8560
8561 /// peptide sequence-level result list attribute: General property of all peptide sequences in the list.
8563
8564 /// peptide sequence-level result list statistic: Statistic pertaining to all peptide sequences in the list.
8566
8567 /// protein-level result list attribute: Attribute of an entire protein list.
8569
8570 /// protein-level result list statistic: A statistical metric of an entire protein list.
8572
8573 /// protein group-level result list statistic: Attrbiute of an entire list of protein groups.
8575
8576 /// Pegasus BT: LECO bench-top GC time-of-flight mass spectrometer.
8577 MS_Pegasus_BT = 1002719,
8578
8579 /// MSPathFinder: PNNL top-down/bottom-up analysis software for identifying peptides and proteoforms in fragmentation mass spectra.
8581
8582 /// MSPathFinder:SpecEValue: MSPathFinder spectral E-value.
8584
8585 /// MSPathFinder:EValue: MSPathFinder E-value.
8587
8588 /// MSPathFinder:QValue: MSPathFinder Q-value.
8590
8591 /// MSPathFinder:PepQValue: MSPathFinder peptide-level Q-value.
8593
8594 /// MSPathFinder:RawScore: MSPathFinder raw score.
8596
8597 /// SYNAPT G2-Si: Waters Corporation SYNAPT G2-Si orthogonal acceleration time-of-flight mass spectrometer.
8599
8600 /// MALDI SYNAPT G2-Si: Waters Corporation MALDI SYNAPT G2-Si orthogonal acceleration time-of-flight mass spectrometer.
8602
8603 /// Vion IMS QTof: Waters Corporation Vion IMS QTof orthogonal acceleration time-of-flight mass spectrometer.
8605
8606 /// Xevo G2 XS Tof: Waters Corporation Xevo G2 XS Tof orthogonal acceleration time-of-flight mass spectrometer.
8608
8609 /// Xevo TQ-XS: Waters Corporation Xevo TQ-XS triple quadrupole mass spectrometer.
8610 MS_Xevo_TQ_XS = 1002730,
8611
8612 /// Xevo TQ-S micro: Waters Corporation Xevo TQ-S micro triple quadrupole mass spectrometer.
8614
8615 /// Orbitrap Fusion Lumos: Thermo Scientific Orbitrap Fusion Lumos mass spectrometer with Tribrid architecture consisting of quadrupole mass filter, linear ion trap and Orbitrap mass analyzers.
8617
8618 /// peptide-level spectral count: The number of MS2 spectra identified for a peptide sequence specified by the amino acid one-letter codes plus optional PTMs in spectral counting.
8620
8621 /// peptide ion-level spectral count: The number of MS2 spectra identified for a molecular ion defined by the peptide sequence represented by the amino acid one-letter codes, plus optional PTMs plus optional charged aducts plus the charge state, in spectral counting.
8623
8624 /// feature-level quantification datatype: The data type of the value reported in a QuantLayer for a feature.
8626
8627 /// PSM-level quantification datatype: The data type of the value reported in a QuantLayer for a PSM.
8629
8630 /// peptide-level quantification datatype: The data type of the value reported in a QuantLayer for a peptide.
8632
8633 /// protein-level quantification datatype: The data type of the value reported in a QuantLayer for a protein.
8635
8636 /// protein group-level quantification datatype: The data type of the value reported in a QuantLayer for a protein group.
8638
8639 /// unmapped peptide: Within the context of a proteogenomics approach, a peptide sequence that has not been mapped to a genomic location.
8641
8642 /// unmapped protein: Within the context of a proteogenomics approach, a protein sequence that has not been mapped to a genomic location.
8644
8645 /// noise array: A data array of noise values.
8647
8648 /// sampled noise m/z array: A data array of parallel, independent m/z values for a sampling of noise across a spectrum (typically much smaller than MS:1000514, the m/z array).
8650
8651 /// sampled noise intensity array: A data array of intensity values for the amplitude of noise variation superposed on the baseline (MS:1002745) across a spectrum (for use with MS:1002743, sampled noise m/z array).
8653
8654 /// sampled noise baseline array: A data array of baseline intensity values (the intensity in the absence of analytes) for a sampling of noise across a spectrum (for use with MS:1002743, sampled noise m/z array).
8656
8657 /// MS-Numpress linear prediction compression followed by zlib compression: Compression using MS-Numpress linear prediction compression and zlib.
8659
8660 /// MS-Numpress positive integer compression followed by zlib compression: Compression using MS-Numpress positive integer compression and zlib.
8662
8663 /// MS-Numpress short logged float compression followed by zlib compression: Compression using MS-Numpress short logged float compression and zlib.
8665
8666 /// Mascot:IntegratedSpectralLibrarySearch: Means that Mascot has integrated the search results of database and spectral library search into a single data set.
8668
8669 /// NIST MSPepSearch: Search tool of the NIST (National Institute of Standards and Technology) for spectral library searches.
8671
8672 /// NIST MSP format: MSP text format defined by the NIST.
8674
8675 /// database type spectral library: Database containing spectra.
8677
8678 /// value between 0 and 1000 inclusive: Value range for scores.
8680
8681 /// MSPepSearch:score: MSPepSearch score (0 for entirely dissimilar and 1000 for identical observed spectrum and library spectrum.
8683
8684 /// combined ms-ms + spectral library search: A combined MS2 (with fragment ions) and spectral library search.
8686
8687 /// iodoTMT quantitation analysis: Quantitation analysis using the Thermo Fisher sulfhydryl-reactive iodo tandem mass tag (iodoTMT) labelling workflow.
8689
8690 /// glyco-TMT quantitation analysis: Quantitation analysis using the Thermo Fisher carbonyl-reactive glyco-tandem mass tag (glyco-TMT) labelling workflow.
8692
8693 /// aminoxyTMT quantitation analysis: Quantitation analysis using the Thermo Fisher carbonyl-reactive aminoxy tandem mass tag (aminoxyTMT) labelling workflow.
8695
8696 /// hydrazideTMT quantitation analysis: Quantitation analysis using the Thermo Fisher carbonyl-reactive hydrazide tandem mass tag (hydrazide-TMT) labelling workflow.
8698
8699 /// iTRAQH quantitation analysis: Quantification analysis using the carbonyl-reactive isobaric tags for relative and absolute quantification hydrazide (iTRAQH) labelling workflow.
8701
8702 /// DiART quantitation analysis: Quantification analysis using the amine-reactive deuterium isobaric amine reactive tag (DiART) labelling workflow.
8704
8705 /// DiLeu quantitation analysis: Quantification analysis using the amine-reactive dimethyl leucine (DiLeu) tag labelling workflow.
8707
8708 /// TMT reagent 127N: The name of the sample labelled with the TMT reagent 127N.
8710
8711 /// TMT reagent 127C: The name of the sample labelled with the TMT reagent 127C.
8713
8714 /// TMT reagent 128N: The name of the sample labelled with the TMT reagent 128N.
8716
8717 /// TMT reagent 128C: The name of the sample labelled with the TMT reagent 128C.
8719
8720 /// TMT reagent 129N: The name of the sample labelled with the TMT reagent 129N.
8722
8723 /// TMT reagent 129C: The name of the sample labelled with the TMT reagent 129C.
8725
8726 /// TMT reagent 130N: The name of the sample labelled with the TMT reagent 130N.
8728
8729 /// TMT reagent 130C: The name of the sample labelled with the TMT reagent 130C.
8731
8732 /// DiART reagent: Deuterium isobaric amine reactive tag labeling reagent.
8734
8735 /// DiART reagent 114: The name of the sample labelled with the DiART reagent 114.
8737
8738 /// DiART reagent 115: The name of the sample labelled with the DiART reagent 115.
8740
8741 /// DiART reagent 116: The name of the sample labelled with the DiART reagent 116.
8743
8744 /// DiART reagent 117: The name of the sample labelled with the DiART reagent 117.
8746
8747 /// DiART reagent 118: The name of the sample labelled with the DiART reagent 118.
8749
8750 /// DiART reagent 119: The name of the sample labelled with the DiART reagent 119.
8752
8753 /// DiLeu reagent: Dimethyl leucine labeling reagent.
8755
8756 /// DiLeu reagent 115: The name of the sample labelled with the DiLeu reagent 115.
8758
8759 /// DiLeu reagent 116: The name of the sample labelled with the DiLeu reagent 116.
8761
8762 /// DiLeu reagent 117: The name of the sample labelled with the DiLeu reagent 117.
8764
8765 /// DiLeu reagent 118: The name of the sample labelled with the DiLeu reagent 118.
8767
8768 /// 6550 iFunnel Q-TOF LC/MS: The 6550 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.
8770
8771 /// 6550A iFunnel Q-TOF LC/MS: The 6550A Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.
8773
8774 /// 6520B Q-TOF LC/MS: The 6520B Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.
8776
8777 /// 6530A Q-TOF LC/MS: The 6530A Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.
8779
8780 /// 6530B Q-TOF LC/MS: The 6530B Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.
8782
8783 /// 6538 Q-TOF LC/MS: The 6538 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.
8785
8786 /// 6540 Q-TOF LC/MS: The 6540 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.
8788
8789 /// 6542 Q-TOF LC/MS: The 6542 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.
8791
8792 /// 6545 Q-TOF LC/MS: The 6545 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.
8794
8795 /// 6560 Q-TOF LC/MS: The 6560 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.
8797
8798 /// 6570 Q-TOF LC/MS: The 6570 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.
8800
8801 /// 6120B Quadrupole LC/MS: The 6120B Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent mass spectrometers.
8803
8804 /// 6150 Quadrupole LC/MS: The 6150 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent mass spectrometers.
8806
8807 /// 6224 Time-of-Flight LC/MS: The 6224 Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.
8809
8810 /// 6230A Time-of-Flight LC/MS: The 6230A Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.
8812
8813 /// 6230B Time-of-Flight LC/MS: The 6230B Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.
8815
8816 /// 6430 Triple Quadrupole LC/MS: The 6430 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer.
8818
8819 /// 6495A Triple Quadrupole LC/MS: The 6495A Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer.
8821
8822 /// 6495B Triple Quadrupole LC/MS: The 6495B Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer.
8824
8825 /// 7000A Triple Quadrupole GC/MS: The 7000A Quadrupole GC/MS system is a Agilent gas chromatography instrument combined with a Agilent triple quadrupole mass spectrometer.
8827
8828 /// 7000B Triple Quadrupole GC/MS: The 7000B Quadrupole GC/MS system is a Agilent gas chromatography instrument combined with a Agilent triple quadrupole mass spectrometer.
8830
8831 /// 7800 Quadrupole ICP-MS: The 7800 Quadrupole ICP-MS system is a Agilent inductively couple plasma instrument combined with a Agilent quadrupole mass spectrometer.
8833
8834 /// 8800 Triple Quadrupole ICP-MS: The 8800 Quadrupole ICP-MS system is a Agilent inductively couple plasma instrument combined with a Agilent quadrupole mass spectrometer.
8836
8837 /// ion: An atomic or molecular species having a net positive or negative electric charge.
8838 MS_ion = 1002806,
8839
8840 /// positive mode adduct ion: Adduct ion with positive ionization.
8842
8843 /// negative mode adduct ion: Adduct ion with negative ionization.
8845
8846 /// adduct ion attribute: Attribute describing an adduct formation.
8848
8849 /// adduct ion mass: Mass of an adduct formation specified by the given value.
8851
8852 /// adduct ion isotope: Isotope of the matrix molecule M of an adduct formation.
8854
8855 /// Regular expression for adduct ion formula: (\[[:digit:]{0,1}M([+][:digit:]{0,1}(H|K|(Na)|(Li)|(Cl)|(Br)|(NH3)|(NH4)|(CH3OH)|(IsoProp)|(DMSO)|(FA)|(Hac)|(TFA)|(NaCOOH)|(HCOOH)|(CF3COOH)|(ACN))){0,}([-][:digit:]{0,1}(H|(H2O)|(CH2)|(CH4)|(NH3)|(CO)|(CO2)|(COCH2)|(HCOOH)|(C2H4)|(C4H8)|(C3H2O3)|(C5H8O4)|(C6H10O4)|(C6H10O5)|(C6H8O6))){0,}\][:digit:]{0,1}[+-]).
8857
8858 /// adduct ion formula: Adduct formation formula specified by the given value.
8860
8861 /// volt-second per square centimeter: An electrical mobility unit that equals the speed [cm/s] an ion reaches when pulled through a gas by a Voltage[V] over a certain distance [cm].
8863
8864 /// Vs/cm^2 (volt-second per square centimeter): An electrical mobility unit that equals the speed [cm/s] an ion reaches when pulled through a gas by a Voltage[V] over a certain distance [cm].
8866
8867 /// inverse reduced ion mobility: Ion mobility measurement for an ion or spectrum of ions as measured in an ion mobility mass spectrometer. This might refer to the central value of a bin into which all ions within a narrow range of mobilities have been aggregated.
8869
8870 /// mean inverse reduced ion mobility array: Array of drift times or inverse reduced ion mobilities, averaged from a matrix of binned m/z and ion mobility values, corresponding to a spectrum of individual peaks encoded with an m/z array.
8872
8873 /// Bruker TDF format: Bruker TDF raw file format.
8875
8876 /// Bruker TDF nativeID format: Native format defined by frame=xsd:nonNegativeInteger scan=xsd:nonNegativeInteger.
8878
8879 /// Bruker TDF nativeID format, combined spectra: Bruker TDF comma separated list of spectra that have been combined prior to searching or interpretation.
8881
8882 /// M+H ion: M+H ion from positive ion mode (M in the property ionMass denotes the mass of the neutral molecule).
8884
8885 /// M-H ion: M-H ion from negative ion mode (M in the property ionMass denotes the mass of the neutral molecule).
8887
8888 /// OpenMS file format: File format developed by the OpenMS team.
8890
8891 /// idXML: OpenMS intermediate identification format.
8892 MS_idXML = 1002823,
8893
8894 /// featureXML: OpenMS feature file format.
8895 MS_featureXML = 1002824,
8896
8897 /// consensusXML: OpenMS consensus map format.
8899
8900 /// MetaMorpheus: MetaMorpheus search engine.
8902
8903 /// MetaMorpheus:score: MetaMorpheus score for PSMs.
8905
8906 /// MetaMorpheus:protein score: MetaMorpheus score for protein groups.
8908
8909 /// XCMS:into: Feature intensity produced by XCMS findPeaks() from integrated peak intensity.
8910 MS_XCMS_into = 1002829,
8911
8912 /// XCMS:intf: Feature intensity produced by XCMS findPeaks() from baseline corrected integrated peak intensity.
8913 MS_XCMS_intf = 1002830,
8914
8915 /// XCMS:maxo: Feature intensity produced by XCMS findPeaks() from maximum peak intensity.
8916 MS_XCMS_maxo = 1002831,
8917
8918 /// XCMS:area: Feature intensity produced by XCMS findPeaks() from feature area that is not normalized by the scan rate.
8919 MS_XCMS_area = 1002832,
8920
8921 /// alternating polarity mode: Polarities of the scans of a run are alternating, i.e. both positive and negative mode scans are acquired.
8923
8924 /// ProteomeDiscoverer:Delta Score: The Delta Score reported by Proteome Discoverer version 2.
8926
8927 /// LTQ Orbitrap Classic: Thermo Fisher Scientific LTQ Orbitrap Classic.
8929
8930 /// iProX dataset identifier: Dataset identifier issued by the iProX repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication.
8932
8933 /// iProX dataset URI: URI that allows the access to one dataset in the iProX repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication.
8935
8936 /// mzMLb format: mzMLb file format, mzML encapsulated within HDF5.
8938
8939 /// Conversion to mzMLb: Conversion of a file format to Proteomics Standards Initiative mzMLb file format.
8941
8942 /// external reference data: Data belonging to an external reference.
8944
8945 /// external HDF5 dataset: The HDF5 dataset location containing the binary data, relative to the dataset containing the mzML. Also indicates that there is no data in the <binary> section of the BinaryDataArray.
8947
8948 /// external offset: The position in the external data where the array begins.
8950
8951 /// external array length: Describes how many fields an array contains.
8953
8954 /// Experiment additional parameter: Root node for terms relating to the description of an Experiment in relation to the PRIDE-XML element ExperimentCollection/Experiment/additional/cvParam.
8956
8957 /// Associated file URI: URI of one external file associated to the PRIDE experiment (maybe through a PX submission).
8959
8960 /// Associated raw file URI: URI of one raw data file associated to the PRIDE experiment (maybe through a PX submission).
8962
8963 /// ProteomeCentral dataset URI: URI associated to one PX submission in ProteomeCentral.
8965
8966 /// Result file URI: URI of one file labeled as 'Result', associated to one PX submission.
8968
8969 /// Search engine output file URI: URI of one search engine output file associated to one PX submission.
8971
8972 /// Peak list file URI: URI of one of one search engine output file associated to one PX submission.
8974
8975 /// Other type file URI: URI of one file labeled as 'Other', associated to one PX submission.
8977
8978 /// Dataset FTP location: FTP location of one entire PX data set.
8980
8981 /// Dataset with no associated published manuscript: A dataset which does not have an associated published manuscript.
8983
8984 /// Peer-reviewed dataset: Dataset has been peer-reviewed somehow.
8986
8987 /// Non peer-reviewed dataset: Dataset that has not been peer-reviewed by any means.
8989
8990 /// Supported dataset by repository: The PX dataset is supported by and is available through the submission repository.
8992
8993 /// Unsupported dataset by repository: The PX dataset is not fully supported by the submission repository.
8995
8996 /// Dataset with its publication pending: A dataset which has an associated manuscript pending for publication.
8998
8999 /// Additional associated raw file URI: Additional URI of one raw data file associated to the PRIDE experiment (maybe through a PX submission). The URI is provided via an additional resource to PRIDE.
9001
9002 /// Gel image file URI: URI of one gel image file associated to one PX submission.
9004
9005 /// Reprocessed complete dataset: All the raw files included in the original dataset (or group of original datasets) have been reanalysed.
9007
9008 /// Reprocessed subset dataset: A subset of the raw files included in the original dataset (or group of original datasets) has been reanalysed.
9010
9011 /// Data derived from previous dataset: One dataset is a reanalysis of previously published data.
9013
9014 /// No PTMs are included in the dataset: No post-translational-modifications are been included in the identified peptides of one dataset.
9016
9017 /// Accepted manuscript: A dataset has one associated manuscript, which has been accepted but no PubMedID is available yet.
9019
9020 /// Reference: Literature reference associated with one dataset (including the authors, title, year and journal details). The value field can be used for the PubMedID, or to specify if one manuscript is just submitted or accepted, but it does not have a PubMedID yet.
9021 MS_Reference = 1002866,
9022
9023 /// Experimental information has been refined since this experiment was originally made publicly available: This means that the experimental information available has been improved, for instance precursor charges were added.
9025
9026 /// Original data: One dataset is not a reanalysis of previously published data.
9028
9029 /// mzR: Bioconductor package mzR for reading and writing mass spectrometry data files.
9030 MS_mzR = 1002869,
9031
9032 /// MSnbase: Bioconductor package MSnbase provides infrastructure for manipulation, processing and visualization of mass spectrometry and proteomics data, ranging from raw to quantitative and annotated data.
9033 MS_MSnbase = 1002870,
9034
9035 /// CAMERA: Bioconductor package CAMERA for annotation of peak lists generated by xcms, rule based annotation of isotopes and adducts, isotope validation, EIC correlation based tagging of unknown adducts and fragments.
9036 MS_CAMERA = 1002871,
9037
9038 /// Panorama Public dataset identifier: Dataset identifier issued by the Panorama Public repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication.
9040
9041 /// Panorama Public dataset URI: URI that allows the access to one dataset in the Panorama Public repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication.
9043
9044 /// TSQ Altis: Thermo Scientific TSQ Altis Triple Quadrupole MS.
9045 MS_TSQ_Altis = 1002874,
9046
9047 /// TSQ Quantis: Thermo Scientific TSQ Quantis Triple Quadrupole MS.
9049
9050 /// TSQ 9000: Thermo Scientific TSQ 9000 Triple Quadrupole MS.
9051 MS_TSQ_9000 = 1002876,
9052
9053 /// Q Exactive HF-X: Thermo Scientific Q Exactive HF-X Hybrid Quadrupole Orbitrap MS.
9055
9056 /// small molecule analysis software: Software for the analysis of small molecules.
9058
9059 /// Progenesis QI: Metabolomics analysis software for LC-MS data from Nonlinear Dynamics.
9061
9062 /// Compound Discoverer: Metabolomics analysis software from Thermo Fisher Scientific.
9064
9065 /// MyCompoundID: Metabolite identification tool MyCompoundID.
9067
9068 /// study variable average function: Function used to calculate the study variable quantification value.
9070
9071 /// median: Median function.
9072 MS_median = 1002883,
9073
9074 /// study variable variation function: Function used to calculate the study variable quantification variation value.
9076
9077 /// standard error: Standard error function.
9079
9080 /// small molecule quantification datatype: The value reported in a small molecule quantification.
9082
9083 /// Progenesis QI normalised abundance: The normalised abundance produced by Progenesis QI LC-MS.
9085
9086 /// small molecule confidence measure: The confidence score produced by a small molecule analysis software.
9088
9089 /// Progenesis MetaScope score: The confidence score produced by Progenesis QI.
9091
9092 /// fragmentation score: The fragmentation confidence score.
9094
9095 /// isotopic fit score: The isotopic fit confidence score.
9097
9098 /// ion mobility attribute: An attribute describing ion mobility searches.
9100
9101 /// ion mobility array: An array of ion mobility data.
9103
9104 /// InChIKey: Unique chemical structure identifier for chemical compounds.
9105 MS_InChIKey = 1002894,
9106
9107 /// small molecule identification attribute: Compound identification information.
9109
9110 /// compound identification confidence level: Confidence level for annotation of identified compounds as defined by the Metabolomics Standards Initiative (MSI). The value slot can have the values 'Level 0' until 'Level 4'.
9112
9113 /// isotopomer peak: Identifies a peak when no de-isotoping has been performed. The value slot reports the isotopomer peak, e.g. '2H', '13C', '15N', '18O', '31P'.
9115
9116 /// Shimadzu Biotech QTOF nativeID format: Native format defined by scan=xsd:nonNegativeInteger.
9118
9119 /// msalign format: msalign file format.
9121
9122 /// feature format: TopFD feature file format.
9124
9125 /// TopPIC: TopPIC: a software tool for top-down mass spectrometry-based proteoform identification and characterization.
9126 MS_TopPIC = 1002901,
9127
9128 /// TopFD: Top-down mass spectral feature detection.
9129 MS_TopFD = 1002902,
9130
9131 /// TopMG: A mass graph-based approach for the identification of modified proteoforms using top-down tandem mass spectra.
9132 MS_TopMG = 1002903,
9133
9134 /// proteoform-level identification attribute: Proteoform level information.
9136
9137 /// proteoform-level identification statistic: Identification confidence metric for a proteoform.
9139
9140 /// search engine specific score for proteoforms: Search engine specific proteoform scores.
9142
9143 /// proteoform-level global FDR: Estimation of the global false discovery rate of proteoforms.
9145
9146 /// proteoform-level local FDR: Estimation of the local false discovery rate of proteoforms.
9148
9149 /// proteoform-level statistical threshold: Estimated statistical threshold at proteoform-level.
9151
9152 /// proteoform-level global FDR threshold: Threshold for the global false discovery rate of proteoforms.
9154
9155 /// proteoform-level local FDR threshold: Threshold for the local false discovery rate of proteoforms.
9157
9158 /// TopPIC input parameter: Search engine input parameters specific to TopPIC.
9160
9161 /// TopPIC:fixed modification: Fixed modifications for TopPIC searching.
9163
9164 /// TopPIC:N-term form: N-terminal forms of proteins allowed in TopPIC searching.
9166
9167 /// TopPIC:error tolerance: Error tolerance for precursor and fragment masses in PPM.
9169
9170 /// TopPIC:max shift: Maximum value of the mass shift (in Dalton) of an unexpected modification.
9172
9173 /// TopPIC:min shift: Minimum value of the mass shift (in Dalton) of an unexpected modification.
9175
9176 /// TopPIC:shift num: Maximum number of unexpected modifications in a proteoform spectrum match.
9178
9179 /// TopPIC:spectral cutoff type: Spectrum-level cutoff type for filtering identified proteoform spectrum matches.
9181
9182 /// TopPIC:spectral cutoff value: Spectrum-level cutoff value for filtering identified proteoform spectrum matches.
9184
9185 /// TopPIC:proteoform-level cutoff type: Proteoform-level cutoff type for filtering identified proteoform spectrum matches.
9187
9188 /// TopPIC:proteoform-level cutoff value: Proteoform-level cutoff value for filtering identified proteoform spectrum matches.
9190
9191 /// TopPIC:generating function: P-value and E-value estimation using generating function.
9193
9194 /// TopPIC:combined spectrum number: Number of combined spectra.
9196
9197 /// TopPIC:mod file: The text file containing the information of common PTMs.
9199
9200 /// TopPIC:thread number: Number of threads used in TopPIC.
9202
9203 /// TopPIC:use TopFD feature: Proteoform identification using TopFD feature file.
9205
9206 /// TopPIC:spectral E-value: TopPIC spectrum-level E-value.
9208
9209 /// TopPIC:spectral FDR: TopPIC spectrum-level FDR.
9211
9212 /// TopPIC:proteoform-level FDR: TopPIC proteoform-level FDR.
9214
9215 /// TopPIC:spectral p-value: TopPIC spectrum-level p-value.
9217
9218 /// TopPIC:MIScore: Modification identification score.
9220
9221 /// TopPIC:MIScore threshold: TopPIC:MIScore threshold.
9223
9224 /// TopMG input parameter: Search engine input parameters specific to TopMG.
9226
9227 /// TopMG:fixed modification: Fixed modifications for TopMG searching.
9229
9230 /// TopMG:N-term form: N-terminal forms of proteins allowed in TopMG searching.
9232
9233 /// TopMG:error tolerance: Error tolerance for precursor and fragment masses in PPM.
9235
9236 /// TopMG:max shift: Maximum value of the mass shift (in Dalton).
9238
9239 /// TopMG:spectral cutoff type: Spectrum-level cutoff type for filtering identified proteoform spectrum matches.
9241
9242 /// TopMG:spectral cutoff value: Spectrum-level cutoff value for filtering identified proteoform spectrum matches.
9244
9245 /// TopMG:proteoform-level cutoff type: Proteoform-level cutoff type for filtering identified proteoform spectrum matches.
9247
9248 /// TopMG:proteoform-level cutoff value: Proteoform-level cutoff value for filtering identified proteoform spectrum matches.
9250
9251 /// TopMG:mod file: The text file containing the information of common PTMs.
9253
9254 /// TopMG:thread number: Number of threads used in TopMG.
9256
9257 /// TopMG:use TopFD feature: Proteoform identification using TopFD feature file.
9259
9260 /// TopMG:proteoform graph gap size: Gap size in constructing proteoform graph.
9262
9263 /// TopMG:variable PTM number: Maximum number of variable PTMs.
9265
9266 /// TopMG:variable PTM number in proteoform graph gap: Maximum number of variable PTMs in a proteoform graph gap.
9268
9269 /// TopMG:use ASF-DIAGONAL: Protein filtering using ASF-DIAGONAL method.
9271
9272 /// TopMG:spectral E-value: TopMG spectrum-level E-value.
9274
9275 /// TopMG:spectral FDR: TopMG spectrum-level FDR.
9277
9278 /// TopMG:proteoform-level FDR: TopMG proteoform-level FDR.
9280
9281 /// TopMG:spectral p-value: TopMG spectrum-level p-value.
9283
9284 /// collisional cross sectional area: Structural molecular descriptor for the effective interaction area between the ion and neutral gas measured in ion mobility mass spectrometry.
9286
9287 /// hr-ms compound identification confidence level: Refined High Resolution mass spectrometry confidence level for annotation of identified compounds as proposed by Schymanski et al. The value slot can have the values 'Level 1', 'Level 2', 'Level 2a', 'Level 2b', 'Level 3', 'Level 4', and 'Level 5'.
9289
9290 /// isotopic ion MS peak: A mass spectrometry peak that represents one or more isotopic ions. The value slot contains a description of the represented isotope set, e.g. 'M+1 peak'.
9292
9293 /// isotopomer MS peak: The described isotopomer mass spectrometric signal. The value slot contains a description of the represented isotopomer, e.g. '13C peak', '15N peak', '2H peak', '18O peak' or '31P peak'.
9295
9296 /// isotopologue MS peak: The described isotopologue mass spectrometric signal. The value slot contains a description of the represented isotopologue, e.g. '13C1 peak' or '15N1 peak'.
9298
9299 /// isomer: One of several species (or molecular entities) that have the same atomic composition (molecular formula) but different line formulae or different stereochemical formulae.
9300 MS_isomer = 1002959,
9301
9302 /// isotopomer: An isomer that differs from another only in the spatial distribution of the constitutive isotopic atoms.
9303 MS_isotopomer = 1002960,
9304
9305 /// isotopologue: A molecular entity that differs only in isotopic composition (number of isotopic substitutions).
9307
9308 /// mean: The arithmetic mean.
9309 MS_mean = 1002962,
9310
9311 /// variation coefficient: The coefficient of variation.
9313
9314 /// lipidomics analysis software: Lipidomics analysis software.
9316
9317 /// Lipid Data Analyzer: Lipid Data Analyzer software for lipid quantification.
9319
9320 /// chrom format: The Lipid Data Analyzer native chrom format.
9322
9323 /// LipidHunter: Software for identification of phospholipids by high-throughput processing of LC-MS and shotgun lipidomics datasets.
9325
9326 /// LipidXplorer: Software for consensual cross-platform lipidomics.
9328
9329 /// LipidMatch: An automated workflow for rule-based lipid identification using untargeted high-resolution tandem mass spectrometry data.
9330 MS_LipidMatch = 1002969,
9331
9332 /// Greazy: Open-source software for automated phospholipid tandem mass spectrometry identification.
9333 MS_Greazy = 1002970,
9334
9335 /// LipidBlast: LC-MS-based lipidomics and automated identification of lipids using the LipidBlast in-silico MS/MS library.
9336 MS_LipidBlast = 1002971,
9337
9338 /// Lipid-Pro: A computational lipid identification solution for untargeted lipidomics on data-independent acquisition tandem mass spectrometry platforms.
9339 MS_Lipid_Pro = 1002972,
9340
9341 /// LipidFinder: A computational workflow for the discovery of lipids for the identification of eicosanoid-phosphoinositides in platelets.
9343
9344 /// LipiDex: An integrated software package for high-confidence lipid identification.
9345 MS_LipiDex = 1002974,
9346
9347 /// LIQUID: An-open source software for identifying lipids in LC-MS/MS-based lipidomics data.
9348 MS_LIQUID = 1002975,
9349
9350 /// ALEX: Analysis of lipid experiments, a calculator for m/z values of intact lipid molecules (MS1).
9351 MS_ALEX = 1002976,
9352
9353 /// ALEX123: Analysis of lipid experiments 123, a calculator with m/z values of intact lipid molecules (MS1) and their fragment ions at the MS2 and MS3 level.
9354 MS_ALEX123 = 1002977,
9355
9356 /// LIMSA: Software tool for the quantitative analysis of mass spectrometric lipidome data.
9357 MS_LIMSA = 1002978,
9358
9359 /// LOBSTAHS: Adduct-Based lipidomics software for the discovery and identification of oxidative stress biomarkers.
9360 MS_LOBSTAHS = 1002979,
9361
9362 /// LipidQA: Lipid qualitative/quantitative analysis software for identification and quantitation of complex lipid molecular species.
9363 MS_LipidQA = 1002980,
9364
9365 /// Proline: The Proline software suite for mass spectrometry based proteomics.
9366 MS_Proline = 1002981,
9367
9368 /// unimod root node: The root node of the unimod modifications ontology.
9370
9371 /// Acetyl: Acetylation.
9372 UNIMOD_Acetyl = 200000001,
9373
9374 /// Amidated: Amidation.
9375 UNIMOD_Amidated = 200000002,
9376
9377 /// Biotin: Biotinylation.
9378 UNIMOD_Biotin = 200000003,
9379
9380 /// Carbamidomethyl: Iodoacetamide derivative.
9382
9383 /// Carbamyl: Carbamylation.
9384 UNIMOD_Carbamyl = 200000005,
9385
9386 /// Carboxymethyl: Iodoacetic acid derivative.
9388
9389 /// Deamidated: Deamidation.
9391
9392 /// ICAT-G: Gygi ICAT(TM) d0.
9393 UNIMOD_ICAT_G = 200000008,
9394
9395 /// ICAT-G:2H(8): Gygi ICAT(TM) d8.
9397
9398 /// Met->Hse: Homoserine.
9399 UNIMOD_Met__Hse = 200000010,
9400
9401 /// Met->Hsl: Homoserine lactone.
9402 UNIMOD_Met__Hsl = 200000011,
9403
9404 /// ICAT-D:2H(8): Applied Biosystems original ICAT(TM) d8.
9406
9407 /// ICAT-D: Applied Biosystems original ICAT(TM) d0.
9408 UNIMOD_ICAT_D = 200000013,
9409
9410 /// NIPCAM: N-isopropylcarboxamidomethyl.
9411 UNIMOD_NIPCAM = 200000017,
9412
9413 /// PEO-Iodoacetyl-LC-Biotin: Biotinyl-iodoacetamidyl-3,6-dioxaoctanediamine.
9415
9416 /// Phospho: Phosphorylation.
9417 UNIMOD_Phospho = 200000021,
9418
9419 /// Dehydrated: Dehydration.
9421
9422 /// Propionamide: Acrylamide adduct.
9424
9425 /// Pyridylacetyl: Pyridylacetyl.
9427
9428 /// Pyro-carbamidomethyl: S-carbamoylmethylcysteine cyclization (N-terminus).
9430
9431 /// Glu->pyro-Glu: Pyro-glu from E.
9433
9434 /// Gln->pyro-Glu: Pyro-glu from Q.
9436
9437 /// SMA: N-Succinimidyl-2-morpholine acetate.
9438 UNIMOD_SMA = 200000029,
9439
9440 /// Cation:Na: Sodium adduct.
9441 UNIMOD_Cation_Na = 200000030,
9442
9443 /// Pyridylethyl: S-pyridylethylation.
9445
9446 /// Methyl: Methylation.
9447 UNIMOD_Methyl = 200000034,
9448
9449 /// Oxidation: Oxidation or Hydroxylation.
9450 UNIMOD_Oxidation = 200000035,
9451
9452 /// Dimethyl: Di-Methylation.
9453 UNIMOD_Dimethyl = 200000036,
9454
9455 /// Trimethyl: Tri-Methylation.
9456 UNIMOD_Trimethyl = 200000037,
9457
9458 /// Methylthio: Beta-methylthiolation.
9460
9461 /// Sulfo: O-Sulfonation.
9462 UNIMOD_Sulfo = 200000040,
9463
9464 /// Hex: Hexose.
9465 UNIMOD_Hex = 200000041,
9466
9467 /// Lipoyl: Lipoyl.
9468 UNIMOD_Lipoyl = 200000042,
9469
9470 /// HexNAc: N-Acetylhexosamine.
9471 UNIMOD_HexNAc = 200000043,
9472
9473 /// Farnesyl: Farnesylation.
9474 UNIMOD_Farnesyl = 200000044,
9475
9476 /// Myristoyl: Myristoylation.
9477 UNIMOD_Myristoyl = 200000045,
9478
9479 /// PyridoxalPhosphate: Pyridoxal phosphate.
9481
9482 /// Palmitoyl: Palmitoylation.
9483 UNIMOD_Palmitoyl = 200000047,
9484
9485 /// GeranylGeranyl: Geranyl-geranyl.
9487
9488 /// Phosphopantetheine: Phosphopantetheine.
9490
9491 /// FAD: Flavin adenine dinucleotide.
9492 UNIMOD_FAD = 200000050,
9493
9494 /// Tripalmitate: N-acyl diglyceride cysteine.
9496
9497 /// Guanidinyl: Guanidination.
9499
9500 /// HNE: 4-hydroxynonenal (HNE).
9501 UNIMOD_HNE = 200000053,
9502
9503 /// Glucuronyl: Hexuronic acid.
9505
9506 /// Glutathione: Glutathione disulfide.
9508
9509 /// Acetyl:2H(3): Acetate labeling reagent (N-term & K) (heavy form, +3amu).
9511
9512 /// Propionyl: Propionate labeling reagent light form (N-term & K).
9513 UNIMOD_Propionyl = 200000058,
9514
9515 /// Propionyl:13C(3): Propionate labeling reagent heavy form (+3amu), N-term & K.
9517
9518 /// GIST-Quat: Quaternary amine labeling reagent light form (N-term & K).
9519 UNIMOD_GIST_Quat = 200000060,
9520
9521 /// GIST-Quat:2H(3): Quaternary amine labeling reagent heavy (+3amu) form, N-term & K.
9523
9524 /// GIST-Quat:2H(6): Quaternary amine labeling reagent heavy form (+6amu), N-term & K.
9526
9527 /// GIST-Quat:2H(9): Quaternary amine labeling reagent heavy form (+9amu), N-term & K.
9529
9530 /// Succinyl: Succinic anhydride labeling reagent light form (N-term & K).
9531 UNIMOD_Succinyl = 200000064,
9532
9533 /// Succinyl:2H(4): Succinic anhydride labeling reagent, heavy form (+4amu, 4H2), N-term & K.
9535
9536 /// Succinyl:13C(4): Succinic anhydride labeling reagent, heavy form (+4amu, 4C13), N-term & K.
9538
9539 /// Iminobiotin: Iminobiotinylation.
9541
9542 /// ESP: ESP-Tag light d0.
9543 UNIMOD_ESP = 200000090,
9544
9545 /// ESP:2H(10): ESP-Tag heavy d10.
9547
9548 /// NHS-LC-Biotin: NHS-LC-Biotin.
9550
9551 /// EDT-maleimide-PEO-biotin: EDT-maleimide-PEO-biotin.
9553
9554 /// IMID: IMID d0.
9555 UNIMOD_IMID = 200000094,
9556
9557 /// IMID:2H(4): IMID d4.
9559
9560 /// Propionamide:2H(3): Acrylamide d3.
9562
9563 /// ICAT-C: Applied Biosystems cleavable ICAT(TM) light.
9564 UNIMOD_ICAT_C = 200000105,
9565
9566 /// ICAT-C:13C(9): Applied Biosystems cleavable ICAT(TM) heavy.
9568
9569 /// FormylMet: Addition of N-formyl met.
9570 UNIMOD_FormylMet = 200000107,
9571
9572 /// Nethylmaleimide: N-ethylmaleimide on cysteines.
9574
9575 /// OxLysBiotinRed: Oxidized lysine biotinylated with biotin-LC-hydrazide, reduced.
9577
9578 /// OxLysBiotin: Oxidized lysine biotinylated with biotin-LC-hydrazide.
9580
9581 /// OxProBiotinRed: Oxidized proline biotinylated with biotin-LC-hydrazide, reduced.
9583
9584 /// OxProBiotin: Oxidized Proline biotinylated with biotin-LC-hydrazide.
9586
9587 /// OxArgBiotin: Oxidized arginine biotinylated with biotin-LC-hydrazide.
9589
9590 /// OxArgBiotinRed: Oxidized arginine biotinylated with biotin-LC-hydrazide, reduced.
9592
9593 /// EDT-iodoacetyl-PEO-biotin: EDT-iodo-PEO-biotin.
9595
9596 /// IBTP: Thio Ether Formation - BTP Adduct.
9597 UNIMOD_IBTP = 200000119,
9598
9599 /// GG: Ubiquitinylation residue.
9600 UNIMOD_GG = 200000121,
9601
9602 /// Formyl: Formylation.
9603 UNIMOD_Formyl = 200000122,
9604
9605 /// ICAT-H: N-iodoacetyl, p-chlorobenzyl-12C6-glucamine.
9606 UNIMOD_ICAT_H = 200000123,
9607
9608 /// ICAT-H:13C(6): N-iodoacetyl, p-chlorobenzyl-13C6-glucamine.
9610
9611 /// Xlink:DTSSP[88]: Cleaved and reduced DSP/DTSSP crosslinker.
9613
9614 /// Fluoro: Fluorination.
9615 UNIMOD_Fluoro = 200000127,
9616
9617 /// Fluorescein: 5-Iodoacetamidofluorescein (Molecular Probe, Eugene, OR).
9619
9620 /// Iodo: Iodination.
9621 UNIMOD_Iodo = 200000129,
9622
9623 /// Diiodo: Di-Iodination.
9624 UNIMOD_Diiodo = 200000130,
9625
9626 /// Triiodo: Tri-Iodination.
9627 UNIMOD_Triiodo = 200000131,
9628
9629 /// Myristoleyl: (cis-delta 5)-tetradecaenoyl.
9631
9632 /// Myristoyl+Delta:H(-4): (cis,cis-delta 5, delta 8)-tetradecadienoyl.
9634
9635 /// Benzoyl: Labeling reagent light form (N-term & K).
9636 UNIMOD_Benzoyl = 200000136,
9637
9638 /// Hex(5)HexNAc(2): N-linked glycan core.
9640
9641 /// Dansyl: 5-dimethylaminonaphthalene-1-sulfonyl.
9642 UNIMOD_Dansyl = 200000139,
9643
9644 /// a-type-ion: ISD a-series (C-Term).
9646
9647 /// Amidine: Amidination of lysines or N-terminal amines with methyl acetimidate.
9648 UNIMOD_Amidine = 200000141,
9649
9650 /// HexNAc(1)dHex(1): HexNAc1dHex1.
9652
9653 /// HexNAc(2): HexNAc2.
9654 UNIMOD_HexNAc_2_ = 200000143,
9655
9656 /// Hex(3): Hex3.
9657 UNIMOD_Hex_3_ = 200000144,
9658
9659 /// HexNAc(1)dHex(2): HexNAc1dHex2.
9661
9662 /// Hex(1)HexNAc(1)dHex(1): Hex1HexNAc1dHex1.
9664
9665 /// HexNAc(2)dHex(1): HexNAc2dHex1.
9667
9668 /// Hex(1)HexNAc(2): Hex1HexNAc2.
9670
9671 /// Hex(1)HexNAc(1)NeuAc(1): Hex1HexNAc1NeuAc1.
9673
9674 /// HexNAc(2)dHex(2): HexNAc2dHex2.
9676
9677 /// Hex(1)HexNAc(2)Pent(1): Hex1HexNAc2Pent1.
9679
9680 /// Hex(1)HexNAc(2)dHex(1): Hex1HexNAc2dHex1.
9682
9683 /// Hex(2)HexNAc(2): Hex2HexNAc2.
9685
9686 /// Hex(3)HexNAc(1)Pent(1): Hex3HexNAc1Pent1.
9688
9689 /// Hex(1)HexNAc(2)dHex(1)Pent(1): Hex1HexNAc2dHex1Pent1.
9691
9692 /// Hex(1)HexNAc(2)dHex(2): Hex1HexNAc2dHex2.
9694
9695 /// Hex(2)HexNAc(2)Pent(1): Hex2HexNAc2Pent1.
9697
9698 /// Hex(2)HexNAc(2)dHex(1): Hex2HexNAc2dHex1.
9700
9701 /// Hex(3)HexNAc(2): Hex3HexNAc2.
9703
9704 /// Hex(1)HexNAc(1)NeuAc(2): Hex HexNAc NeuAc(2) ---OR--- Hex HexNAc(3) HexA.
9706
9707 /// Hex(3)HexNAc(2)Phos(1): Hex(3) HexNAc(2) Phos.
9709
9710 /// Delta:S(-1)Se(1): Selenium replaces sulfur.
9712
9713 /// Delta:H(1)N(-1)18O(1): Glycosylated asparagine 18O labeling.
9715
9716 /// NBS:13C(6): Shimadzu NBS-13C.
9718
9719 /// NBS: Shimadzu NBS-12C.
9720 UNIMOD_NBS = 200000172,
9721
9722 /// BHT: Michael addition of BHT quinone methide to Cysteine and Lysine.
9723 UNIMOD_BHT = 200000176,
9724
9725 /// DAET: Phosphorylation to amine thiol.
9726 UNIMOD_DAET = 200000178,
9727
9728 /// Label:13C(9): 13C(9) Silac label.
9730
9731 /// Label:13C(9)+Phospho: C13 label (Phosphotyrosine).
9733
9734 /// HPG: Hydroxyphenylglyoxal arginine.
9735 UNIMOD_HPG = 200000186,
9736
9737 /// 2HPG: Bis(hydroxphenylglyoxal) arginine.
9738 UNIMOD_2HPG = 200000187,
9739
9740 /// Label:13C(6): 13C(6) Silac label.
9742
9743 /// Label:18O(2): O18 label at both C-terminal oxygens.
9745
9746 /// AccQTag: 6-aminoquinolyl-N-hydroxysuccinimidyl carbamate.
9747 UNIMOD_AccQTag = 200000194,
9748
9749 /// QAT: APTA-d0.
9750 UNIMOD_QAT = 200000195,
9751
9752 /// QAT:2H(3): APTA d3.
9753 UNIMOD_QAT_2H_3_ = 200000196,
9754
9755 /// EQAT: EAPTA d0.
9756 UNIMOD_EQAT = 200000197,
9757
9758 /// EQAT:2H(5): EAPTA d5.
9760
9761 /// Dimethyl:2H(4): DiMethyl-CHD2.
9763
9764 /// Ethanedithiol: EDT.
9766
9767 /// Delta:H(6)C(6)O(1): Acrolein addition +94.
9769
9770 /// Delta:H(4)C(3)O(1): Acrolein addition +56.
9772
9773 /// Delta:H(2)C(3): Acrolein addition +38.
9775
9776 /// Delta:H(4)C(6): Acrolein addition +76.
9778
9779 /// Delta:H(8)C(6)O(2): Acrolein addition +112.
9781
9782 /// NEIAA: N-ethyl iodoacetamide-d0.
9783 UNIMOD_NEIAA = 200000211,
9784
9785 /// NEIAA:2H(5): N-ethyl iodoacetamide-d5.
9787
9788 /// ADP-Ribosyl: ADP Ribose addition.
9790
9791 /// iTRAQ4plex: Representative mass and accurate mass for 116 & 117.
9793
9794 /// IGBP: Light IDBEST tag for quantitation.
9795 UNIMOD_IGBP = 200000243,
9796
9797 /// Crotonaldehyde: Crotonaldehyde.
9799
9800 /// Delta:H(2)C(2): Acetaldehyde +26.
9802
9803 /// Delta:H(4)C(2): Acetaldehyde +28.
9805
9806 /// Delta:H(4)C(3): Propionaldehyde +40.
9808
9809 /// Label:18O(1): O18 Labeling.
9811
9812 /// Label:13C(6)15N(2): 13C(6) 15N(2) Silac label.
9814
9815 /// Thiophospho: Thiophosphorylation.
9817
9818 /// SPITC: 4-sulfophenyl isothiocyanate.
9819 UNIMOD_SPITC = 200000261,
9820
9821 /// Label:2H(3): Trideuteration.
9823
9824 /// PET: Phosphorylation to pyridyl thiol.
9825 UNIMOD_PET = 200000264,
9826
9827 /// Label:13C(6)15N(4): 13C(6) 15N(4) Silac label.
9829
9830 /// Label:13C(5)15N(1): 13C(5) 15N(1) Silac label.
9832
9833 /// Label:13C(9)15N(1): 13C(9) 15N(1) Silac label.
9835
9836 /// Cytopiloyne: Nucleophilic addtion to cytopiloyne.
9838
9839 /// Cytopiloyne+water: Nucleophilic addition to cytopiloyne+H2O.
9841
9842 /// CAF: Sulfonation of N-terminus.
9843 UNIMOD_CAF = 200000272,
9844
9845 /// Nitrosyl: S-nitrosylation.
9846 UNIMOD_Nitrosyl = 200000275,
9847
9848 /// AEBS: Aminoethylbenzenesulfonylation.
9849 UNIMOD_AEBS = 200000276,
9850
9851 /// Ethanolyl: Ethanolation.
9852 UNIMOD_Ethanolyl = 200000278,
9853
9854 /// Ethyl: Ethylation.
9855 UNIMOD_Ethyl = 200000280,
9856
9857 /// CoenzymeA: Cysteine modified Coenzyme A.
9858 UNIMOD_CoenzymeA = 200000281,
9859
9860 /// Methyl:2H(2): Deuterium Methylation of Lysine.
9862
9863 /// SulfanilicAcid: Light Sulfanilic Acid (SA) C12.
9865
9866 /// SulfanilicAcid:13C(6): Heavy Sulfanilic Acid (SA) C13.
9868
9869 /// Trp->Oxolactone: Tryptophan oxidation to oxolactone.
9871
9872 /// Biotin-PEO-Amine: Biotin polyethyleneoxide amine.
9874
9875 /// Biotin-HPDP: Pierce EZ-Link Biotin-HPDP.
9877
9878 /// Delta:Hg(1): Mercury Mercaptan.
9880
9881 /// IodoU-AMP: (Iodo)-uracil MP.
9882 UNIMOD_IodoU_AMP = 200000292,
9883
9884 /// CAMthiopropanoyl: 3-(carbamidomethylthio)propanoyl.
9886
9887 /// IED-Biotin: Biotinoyl-iodoacetyl-ethylenediamine.
9889
9890 /// dHex: Fucose.
9891 UNIMOD_dHex = 200000295,
9892
9893 /// Methyl:2H(3): Deuterated methyl ester.
9895
9896 /// Carboxy: Carboxylation.
9897 UNIMOD_Carboxy = 200000299,
9898
9899 /// Bromobimane: Monobromobimane derivative.
9901
9902 /// Menadione: Menadione quinone derivative.
9903 UNIMOD_Menadione = 200000302,
9904
9905 /// DeStreak: Cysteine mercaptoethanol.
9906 UNIMOD_DeStreak = 200000303,
9907
9908 /// dHex(1)Hex(3)HexNAc(4): Fucosylated biantennary (-2 galactose).
9910
9911 /// dHex(1)Hex(4)HexNAc(4): DHex Hex(4) HexNAc(4) ---OR--- Hex(4) HexNAc(4) Pent Me.
9913
9914 /// dHex(1)Hex(5)HexNAc(4): Fucosylated biantennary.
9916
9917 /// Hex(3)HexNAc(4): Biantennary (-2 galactose).
9919
9920 /// Hex(4)HexNAc(4): Biantennary (-1 galactose).
9922
9923 /// Hex(5)HexNAc(4): Biantennary.
9925
9926 /// Cysteinyl: Cysteinylation.
9927 UNIMOD_Cysteinyl = 200000312,
9928
9929 /// Lys-loss: Loss of C-terminal K from Heavy Chain of MAb.
9930 UNIMOD_Lys_loss = 200000313,
9931
9932 /// Nmethylmaleimide: Nmethylmaleimide.
9934
9935 /// DimethylpyrroleAdduct: 2,5-dimethypyrrole.
9937
9938 /// Delta:H(2)C(5): MDA adduct +62.
9940
9941 /// Delta:H(2)C(3)O(1): MDA adduct +54.
9943
9944 /// Nethylmaleimide+water: Nethylmaleimidehydrolysis.
9946
9947 /// Xlink:B10621: Bis-((N-iodoacetyl)piperazinyl)sulfonerhodamine.
9949
9950 /// Xlink:DTBP[87]: Cleaved and reduced DTBP crosslinker.
9952
9953 /// FP-Biotin: 10-ethoxyphosphinyl-N-(biotinamidopentyl)decanamide.
9954 UNIMOD_FP_Biotin = 200000325,
9955
9956 /// Delta:H(4)C(2)O(-1)S(1): S-Ethylcystine from Serine.
9958
9959 /// Methyl:2H(3)13C(1): Monomethylation.
9961
9962 /// Dimethyl:2H(6)13C(2): Dimethylation.
9964
9965 /// Thiophos-S-S-biotin: Thiophosphate labeled with biotin-HPDP.
9967
9968 /// Can-FP-biotin: 6-N-biotinylaminohexyl isopropyl phosphate.
9970
9971 /// HNE+Delta:H(2): Reduced 4-Hydroxynonenal.
9973
9974 /// Methylamine: Michael addition with methylamine.
9976
9977 /// Bromo: Bromination.
9978 UNIMOD_Bromo = 200000340,
9979
9980 /// Amino: Tyrosine oxidation to 2-aminotyrosine.
9981 UNIMOD_Amino = 200000342,
9982
9983 /// Argbiotinhydrazide: Oxidized Arginine biotinylated with biotin hydrazide.
9985
9986 /// Arg->GluSA: Arginine oxidation to glutamic semialdehyde.
9988
9989 /// Trioxidation: Cysteine oxidation to cysteic acid.
9991
9992 /// His->Asn: His->Asn substitution.
9993 UNIMOD_His__Asn = 200000348,
9994
9995 /// His->Asp: His->Asp substitution.
9996 UNIMOD_His__Asp = 200000349,
9997
9998 /// Trp->Hydroxykynurenin: Tryptophan oxidation to hydroxykynurenin.
10000
10001 /// Trp->Kynurenin: Tryptophan oxidation to kynurenin.
10003
10004 /// Lys->Allysine: Lysine oxidation to aminoadipic semialdehyde.
10006
10007 /// Lysbiotinhydrazide: Oxidized Lysine biotinylated with biotin hydrazide.
10009
10010 /// Nitro: Oxidation to nitro.
10011 UNIMOD_Nitro = 200000354,
10012
10013 /// probiotinhydrazide: Oxidized proline biotinylated with biotin hydrazide.
10015
10016 /// Pro->pyro-Glu: Proline oxidation to pyroglutamic acid.
10018
10019 /// Pro->Pyrrolidinone: Proline oxidation to pyrrolidinone.
10021
10022 /// Thrbiotinhydrazide: Oxidized Threonine biotinylated with biotin hydrazide.
10024
10025 /// Diisopropylphosphate: O-Diisopropylphosphorylation.
10027
10028 /// Isopropylphospho: O-Isopropylphosphorylation.
10030
10031 /// ICPL:13C(6): Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, heavy form.
10033
10034 /// ICPL: Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, light form.
10035 UNIMOD_ICPL = 200000365,
10036
10037 /// Deamidated:18O(1): Deamidation in presence of O18.
10039
10040 /// Cys->Dha: Dehydroalanine (from Cysteine).
10041 UNIMOD_Cys__Dha = 200000368,
10042
10043 /// Pro->Pyrrolidone: Pyrrolidone from Proline.
10045
10046 /// HMVK: Michael addition of hydroxymethylvinyl ketone to cysteine.
10047 UNIMOD_HMVK = 200000371,
10048
10049 /// Arg->Orn: Ornithine from Arginine.
10050 UNIMOD_Arg__Orn = 200000372,
10051
10052 /// Dehydro: Half of a disulfide bridge.
10053 UNIMOD_Dehydro = 200000374,
10054
10055 /// Diphthamide: Diphthamide.
10057
10058 /// Hydroxyfarnesyl: Hydroxyfarnesyl.
10060
10061 /// Diacylglycerol: Diacylglycerol.
10063
10064 /// Carboxyethyl: Carboxyethyl.
10066
10067 /// Hypusine: Hypusine.
10068 UNIMOD_Hypusine = 200000379,
10069
10070 /// Retinylidene: Retinal.
10072
10073 /// Lys->AminoadipicAcid: Alpha-amino adipic acid.
10075
10076 /// Cys->PyruvicAcid: Pyruvic acid from N-term cys.
10078
10079 /// Ammonia-loss: Loss of ammonia.
10081
10082 /// Phycocyanobilin: Phycocyanobilin.
10084
10085 /// Phycoerythrobilin: Phycoerythrobilin.
10087
10088 /// Phytochromobilin: Phytochromobilin.
10090
10091 /// Heme: Heme.
10092 UNIMOD_Heme = 200000390,
10093
10094 /// Molybdopterin: Molybdopterin.
10096
10097 /// Quinone: Quinone.
10098 UNIMOD_Quinone = 200000392,
10099
10100 /// Glucosylgalactosyl: Glucosylgalactosyl hydroxylysine.
10102
10103 /// GPIanchor: Glycosylphosphatidylinositol.
10104 UNIMOD_GPIanchor = 200000394,
10105
10106 /// PhosphoribosyldephosphoCoA: Phosphoribosyl dephospho-coenzyme A.
10108
10109 /// GlycerylPE: Glycerylphosphorylethanolamine.
10111
10112 /// Triiodothyronine: Triiodo.
10114
10115 /// Thyroxine: Tetraiodo.
10116 UNIMOD_Thyroxine = 200000398,
10117
10118 /// Tyr->Dha: Dehydroalanine (from Tyrosine).
10119 UNIMOD_Tyr__Dha = 200000400,
10120
10121 /// Didehydro: 2-amino-3-oxo-butanoic_acid.
10122 UNIMOD_Didehydro = 200000401,
10123
10124 /// Cys->Oxoalanine: Oxoalanine.
10126
10127 /// Ser->LacticAcid: Lactic acid from N-term Ser.
10129
10130 /// Phosphoadenosine: AMP.
10132
10133 /// Hydroxycinnamyl: Hydroxycinnamyl.
10135
10136 /// Glycosyl: Glycosyl-L-hydroxyproline.
10137 UNIMOD_Glycosyl = 200000408,
10138
10139 /// FMNH: Flavin mononucleotide.
10140 UNIMOD_FMNH = 200000409,
10141
10142 /// Archaeol: S-diphytanylglycerol diether.
10143 UNIMOD_Archaeol = 200000410,
10144
10145 /// Phenylisocyanate: Phenyl isocyanate.
10147
10148 /// Phenylisocyanate:2H(5): D5-phenyl isocyanate.
10150
10151 /// Phosphoguanosine: Phospho-guanosine.
10153
10154 /// Hydroxymethyl: Hydroxymethyl.
10156
10157 /// MolybdopterinGD+Delta:S(-1)Se(1): L-selenocysteinyl molybdenum bis(molybdopterin guanine dinucleotide).
10159
10160 /// Dipyrrolylmethanemethyl: Dipyrrolylmethanemethyl.
10162
10163 /// PhosphoUridine: Uridine phosphodiester.
10165
10166 /// Glycerophospho: Glycerophospho.
10168
10169 /// Carboxy->Thiocarboxy: Thiocarboxylic acid.
10171
10172 /// Sulfide: Persulfide.
10173 UNIMOD_Sulfide = 200000421,
10174
10175 /// PyruvicAcidIminyl: N-pyruvic acid 2-iminyl.
10177
10178 /// Delta:Se(1): Selenyl.
10180
10181 /// MolybdopterinGD: Molybdenum bis(molybdopterin guanine dinucleotide).
10183
10184 /// Dioxidation: Dihydroxy.
10186
10187 /// Octanoyl: Octanoyl.
10188 UNIMOD_Octanoyl = 200000426,
10189
10190 /// PhosphoHexNAc: N-acetylglucosamine-1-phosphoryl.
10192
10193 /// PhosphoHex: Phosphoglycosyl-D-mannose-1-phosphoryl.
10195
10196 /// Palmitoleyl: Palmitoleyl.
10198
10199 /// Cholesterol: Cholesterol ester.
10201
10202 /// Didehydroretinylidene: 3,4-didehydroretinylidene.
10204
10205 /// CHDH: Cis-14-hydroxy-10,13-dioxo-7-heptadecenoic ester.
10206 UNIMOD_CHDH = 200000434,
10207
10208 /// Methylpyrroline: 4-methyl-delta-1-pyrroline-5-carboxyl.
10210
10211 /// Hydroxyheme: Hydroxyheme.
10213
10214 /// MicrocinC7: (3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5-adenosine.
10216
10217 /// Cyano: Cyano.
10218 UNIMOD_Cyano = 200000438,
10219
10220 /// Diironsubcluster: Hydrogenase diiron subcluster.
10222
10223 /// Amidino: Amidino.
10224 UNIMOD_Amidino = 200000440,
10225
10226 /// FMN: O3-(riboflavin phosphoryl).
10227 UNIMOD_FMN = 200000442,
10228
10229 /// FMNC: S-(4a-FMN).
10230 UNIMOD_FMNC = 200000443,
10231
10232 /// CuSMo: Copper sulfido molybdopterin cytosine dinuncleotide.
10233 UNIMOD_CuSMo = 200000444,
10234
10235 /// Hydroxytrimethyl: 5-hydroxy-N6,N6,N6-trimethyl.
10237
10238 /// Deoxy: Reduction.
10239 UNIMOD_Deoxy = 200000447,
10240
10241 /// Microcin: Microcin E492 siderophore ester from serine.
10242 UNIMOD_Microcin = 200000448,
10243
10244 /// Decanoyl: Lipid.
10245 UNIMOD_Decanoyl = 200000449,
10246
10247 /// Glu: Monoglutamyl.
10248 UNIMOD_Glu = 200000450,
10249
10250 /// GluGlu: Diglutamyl.
10251 UNIMOD_GluGlu = 200000451,
10252
10253 /// GluGluGlu: Triglutamyl.
10254 UNIMOD_GluGluGlu = 200000452,
10255
10256 /// GluGluGluGlu: Tetraglutamyl.
10258
10259 /// HexN: Hexosamine.
10260 UNIMOD_HexN = 200000454,
10261
10262 /// Xlink:DMP[154]: Free monolink of DMP crosslinker.
10264
10265 /// NDA: Naphthalene-2,3-dicarboxaldehyde.
10266 UNIMOD_NDA = 200000457,
10267
10268 /// SPITC:13C(6): 4-sulfophenyl isothiocyanate (Heavy C13).
10270
10271 /// AEC-MAEC: Aminoethylcysteine.
10272 UNIMOD_AEC_MAEC = 200000472,
10273
10274 /// TMAB: 4-trimethyllammoniumbutyryl-.
10275 UNIMOD_TMAB = 200000476,
10276
10277 /// TMAB:2H(9): D9-4-trimethyllammoniumbutyryl-.
10279
10280 /// FTC: Fluorescein-5-thiosemicarbazide.
10281 UNIMOD_FTC = 200000478,
10282
10283 /// Label:2H(4): 4,4,5,5-D4 Lysine.
10285
10286 /// DHP: Dehydropyrrolizidine alkaloid (dehydroretronecine) on cysteines.
10287 UNIMOD_DHP = 200000488,
10288
10289 /// Hep: Heptose.
10290 UNIMOD_Hep = 200000490,
10291
10292 /// BADGE: Bisphenol A diglycidyl ether derivative.
10293 UNIMOD_BADGE = 200000493,
10294
10295 /// CyDye-Cy3: Cy3 CyDye DIGE Fluor saturation dye.
10296 UNIMOD_CyDye_Cy3 = 200000494,
10297
10298 /// CyDye-Cy5: Cy5 CyDye DIGE Fluor saturation dye.
10299 UNIMOD_CyDye_Cy5 = 200000495,
10300
10301 /// BHTOH: Michael addition of t-butyl hydroxylated BHT (BHTOH) to C, H or K.
10302 UNIMOD_BHTOH = 200000498,
10303
10304 /// IGBP:13C(2): Heavy IDBEST tag for quantitation.
10306
10307 /// Nmethylmaleimide+water: Nmethylmaleimidehydrolysis.
10309
10310 /// PyMIC: 3-methyl-2-pyridyl isocyanate.
10311 UNIMOD_PyMIC = 200000501,
10312
10313 /// LG-lactam-K: Levuglandinyl - lysine lactam adduct.
10315
10316 /// LG-Hlactam-K: Levuglandinyl - lysine hydroxylactam adduct.
10318
10319 /// LG-lactam-R: Levuglandinyl - arginine lactam adduct.
10321
10322 /// LG-Hlactam-R: Levuglandinyl - arginine hydroxylactam adduct.
10324
10325 /// Dimethyl:2H(4)13C(2): DiMethyl-C13HD2.
10327
10328 /// Hex(2): Lactosylation.
10329 UNIMOD_Hex_2_ = 200000512,
10330
10331 /// C8-QAT: [3-(2,5)-Dioxopyrrolidin-1-yloxycarbonyl)-propyl]dimethyloctylammonium.
10332 UNIMOD_C8_QAT = 200000513,
10333
10334 /// PropylNAGthiazoline: Propyl-1,2-dideoxy-2\'-methyl-alpha-D-glucopyranoso-[2,1-d]-Delta2\'-thiazoline.
10336
10337 /// FNEM: Fluorescein-5-maleimide.
10338 UNIMOD_FNEM = 200000515,
10339
10340 /// Diethyl: Diethylation, analogous to Dimethylation.
10341 UNIMOD_Diethyl = 200000518,
10342
10343 /// BisANS: 4,4\'-dianilino-1,1\'-binaphthyl-5,5\'-disulfonic acid.
10344 UNIMOD_BisANS = 200000519,
10345
10346 /// Piperidine: Piperidination.
10348
10349 /// Maleimide-PEO2-Biotin: Maleimide-Biotin.
10351
10352 /// Sulfo-NHS-LC-LC-Biotin: Biot_LC_LC.
10354
10355 /// CLIP_TRAQ_2: CLIP_TRAQ_2.
10357
10358 /// Dethiomethyl: Prompt loss of side chain from oxidised Met.
10360
10361 /// Methyl+Deamidated: Deamidation followed by a methylation.
10363
10364 /// Delta:H(5)C(2): Dimethylation of proline residue.
10366
10367 /// Cation:K: Replacement of proton by potassium.
10368 UNIMOD_Cation_K = 200000530,
10369
10370 /// Cation:Cu[I]: Replacement of proton by copper.
10372
10373 /// iTRAQ4plex114: Accurate mass for 114.
10375
10376 /// iTRAQ4plex115: Accurate mass for 115.
10378
10379 /// Dibromo: Dibromo.
10380 UNIMOD_Dibromo = 200000534,
10381
10382 /// LRGG: Ubiquitination.
10383 UNIMOD_LRGG = 200000535,
10384
10385 /// CLIP_TRAQ_3: CLIP_TRAQ_3.
10387
10388 /// CLIP_TRAQ_4: CLIP_TRAQ_4.
10390
10391 /// Biotin:Cayman-10141: Was 15dB-biotin.
10393
10394 /// Biotin:Cayman-10013: Was PGA1-biotin.
10396
10397 /// Ala->Ser: Ala->Ser substitution.
10398 UNIMOD_Ala__Ser = 200000540,
10399
10400 /// Ala->Thr: Ala->Thr substitution.
10401 UNIMOD_Ala__Thr = 200000541,
10402
10403 /// Ala->Asp: Ala->Asp substitution.
10404 UNIMOD_Ala__Asp = 200000542,
10405
10406 /// Ala->Pro: Ala->Pro substitution.
10407 UNIMOD_Ala__Pro = 200000543,
10408
10409 /// Ala->Gly: Ala->Gly substitution.
10410 UNIMOD_Ala__Gly = 200000544,
10411
10412 /// Ala->Glu: Ala->Glu substitution.
10413 UNIMOD_Ala__Glu = 200000545,
10414
10415 /// Ala->Val: Ala->Val substitution.
10416 UNIMOD_Ala__Val = 200000546,
10417
10418 /// Cys->Phe: Cys->Phe substitution.
10419 UNIMOD_Cys__Phe = 200000547,
10420
10421 /// Cys->Ser: Cys->Ser substitution.
10422 UNIMOD_Cys__Ser = 200000548,
10423
10424 /// Cys->Trp: Cys->Trp substitution.
10425 UNIMOD_Cys__Trp = 200000549,
10426
10427 /// Cys->Tyr: Cys->Tyr substitution.
10428 UNIMOD_Cys__Tyr = 200000550,
10429
10430 /// Cys->Arg: Cys->Arg substitution.
10431 UNIMOD_Cys__Arg = 200000551,
10432
10433 /// Cys->Gly: Cys->Gly substitution.
10434 UNIMOD_Cys__Gly = 200000552,
10435
10436 /// Asp->Ala: Asp->Ala substitution.
10437 UNIMOD_Asp__Ala = 200000553,
10438
10439 /// Asp->His: Asp->His substitution.
10440 UNIMOD_Asp__His = 200000554,
10441
10442 /// Asp->Asn: Asp->Asn substitution.
10443 UNIMOD_Asp__Asn = 200000555,
10444
10445 /// Asp->Gly: Asp->Gly substitution.
10446 UNIMOD_Asp__Gly = 200000556,
10447
10448 /// Asp->Tyr: Asp->Tyr substitution.
10449 UNIMOD_Asp__Tyr = 200000557,
10450
10451 /// Asp->Glu: Asp->Glu substitution.
10452 UNIMOD_Asp__Glu = 200000558,
10453
10454 /// Asp->Val: Asp->Val substitution.
10455 UNIMOD_Asp__Val = 200000559,
10456
10457 /// Glu->Ala: Glu->Ala substitution.
10458 UNIMOD_Glu__Ala = 200000560,
10459
10460 /// Glu->Gln: Glu->Gln substitution.
10461 UNIMOD_Glu__Gln = 200000561,
10462
10463 /// Glu->Asp: Glu->Asp substitution.
10464 UNIMOD_Glu__Asp = 200000562,
10465
10466 /// Glu->Lys: Glu->Lys substitution.
10467 UNIMOD_Glu__Lys = 200000563,
10468
10469 /// Glu->Gly: Glu->Gly substitution.
10470 UNIMOD_Glu__Gly = 200000564,
10471
10472 /// Glu->Val: Glu->Val substitution.
10473 UNIMOD_Glu__Val = 200000565,
10474
10475 /// Phe->Ser: Phe->Ser substitution.
10476 UNIMOD_Phe__Ser = 200000566,
10477
10478 /// Phe->Cys: Phe->Cys substitution.
10479 UNIMOD_Phe__Cys = 200000567,
10480
10481 /// Phe->Xle: Phe->Leu/Ile substitution.
10482 UNIMOD_Phe__Xle = 200000568,
10483
10484 /// Phe->Tyr: Phe->Tyr substitution.
10485 UNIMOD_Phe__Tyr = 200000569,
10486
10487 /// Phe->Val: Phe->Val substitution.
10488 UNIMOD_Phe__Val = 200000570,
10489
10490 /// Gly->Ala: Gly->Ala substitution.
10491 UNIMOD_Gly__Ala = 200000571,
10492
10493 /// Gly->Ser: Gly->Ser substitution.
10494 UNIMOD_Gly__Ser = 200000572,
10495
10496 /// Gly->Trp: Gly->Trp substitution.
10497 UNIMOD_Gly__Trp = 200000573,
10498
10499 /// Gly->Glu: Gly->Glu substitution.
10500 UNIMOD_Gly__Glu = 200000574,
10501
10502 /// Gly->Val: Gly->Val substitution.
10503 UNIMOD_Gly__Val = 200000575,
10504
10505 /// Gly->Asp: Gly->Asp substitution.
10506 UNIMOD_Gly__Asp = 200000576,
10507
10508 /// Gly->Cys: Gly->Cys substitution.
10509 UNIMOD_Gly__Cys = 200000577,
10510
10511 /// Gly->Arg: Gly->Arg substitution.
10512 UNIMOD_Gly__Arg = 200000578,
10513
10514 /// His->Pro: His->Pro substitution.
10515 UNIMOD_His__Pro = 200000580,
10516
10517 /// His->Tyr: His->Tyr substitution.
10518 UNIMOD_His__Tyr = 200000581,
10519
10520 /// His->Gln: His->Gln substitution.
10521 UNIMOD_His__Gln = 200000582,
10522
10523 /// His->Arg: His->Arg substitution.
10524 UNIMOD_His__Arg = 200000584,
10525
10526 /// His->Xle: His->Leu/Ile substitution.
10527 UNIMOD_His__Xle = 200000585,
10528
10529 /// Xle->Thr: Leu/Ile->Thr substitution.
10530 UNIMOD_Xle__Thr = 200000588,
10531
10532 /// Xle->Asn: Leu/Ile->Asn substitution.
10533 UNIMOD_Xle__Asn = 200000589,
10534
10535 /// Xle->Lys: Leu/Ile->Lys substitution.
10536 UNIMOD_Xle__Lys = 200000590,
10537
10538 /// Lys->Thr: Lys->Thr substitution.
10539 UNIMOD_Lys__Thr = 200000594,
10540
10541 /// Lys->Asn: Lys->Asn substitution.
10542 UNIMOD_Lys__Asn = 200000595,
10543
10544 /// Lys->Glu: Lys->Glu substitution.
10545 UNIMOD_Lys__Glu = 200000596,
10546
10547 /// Lys->Gln: Lys->Gln substitution.
10548 UNIMOD_Lys__Gln = 200000597,
10549
10550 /// Lys->Met: Lys->Met substitution.
10551 UNIMOD_Lys__Met = 200000598,
10552
10553 /// Lys->Arg: Lys->Arg substitution.
10554 UNIMOD_Lys__Arg = 200000599,
10555
10556 /// Lys->Xle: Lys->Leu/Ile substitution.
10557 UNIMOD_Lys__Xle = 200000600,
10558
10559 /// Xle->Ser: Leu/Ile->Ser substitution.
10560 UNIMOD_Xle__Ser = 200000601,
10561
10562 /// Xle->Phe: Leu/Ile->Phe substitution.
10563 UNIMOD_Xle__Phe = 200000602,
10564
10565 /// Xle->Trp: Leu/Ile->Trp substitution.
10566 UNIMOD_Xle__Trp = 200000603,
10567
10568 /// Xle->Pro: Leu/Ile->Pro substitution.
10569 UNIMOD_Xle__Pro = 200000604,
10570
10571 /// Xle->Val: Leu/Ile->Val substitution.
10572 UNIMOD_Xle__Val = 200000605,
10573
10574 /// Xle->His: Leu/Ile->His substitution.
10575 UNIMOD_Xle__His = 200000606,
10576
10577 /// Xle->Gln: Leu/Ile->Gln substitution.
10578 UNIMOD_Xle__Gln = 200000607,
10579
10580 /// Xle->Met: Leu/Ile->Met substitution.
10581 UNIMOD_Xle__Met = 200000608,
10582
10583 /// Xle->Arg: Leu/Ile->Arg substitution.
10584 UNIMOD_Xle__Arg = 200000609,
10585
10586 /// Met->Thr: Met->Thr substitution.
10587 UNIMOD_Met__Thr = 200000610,
10588
10589 /// Met->Arg: Met->Arg substitution.
10590 UNIMOD_Met__Arg = 200000611,
10591
10592 /// Met->Lys: Met->Lys substitution.
10593 UNIMOD_Met__Lys = 200000613,
10594
10595 /// Met->Xle: Met->Leu/Ile substitution.
10596 UNIMOD_Met__Xle = 200000614,
10597
10598 /// Met->Val: Met->Val substitution.
10599 UNIMOD_Met__Val = 200000615,
10600
10601 /// Asn->Ser: Asn->Ser substitution.
10602 UNIMOD_Asn__Ser = 200000616,
10603
10604 /// Asn->Thr: Asn->Thr substitution.
10605 UNIMOD_Asn__Thr = 200000617,
10606
10607 /// Asn->Lys: Asn->Lys substitution.
10608 UNIMOD_Asn__Lys = 200000618,
10609
10610 /// Asn->Tyr: Asn->Tyr substitution.
10611 UNIMOD_Asn__Tyr = 200000619,
10612
10613 /// Asn->His: Asn->His substitution.
10614 UNIMOD_Asn__His = 200000620,
10615
10616 /// Asn->Asp: Asn->Asp substitution.
10617 UNIMOD_Asn__Asp = 200000621,
10618
10619 /// Asn->Xle: Asn->Leu/Ile substitution.
10620 UNIMOD_Asn__Xle = 200000622,
10621
10622 /// Pro->Ser: Pro->Ser substitution.
10623 UNIMOD_Pro__Ser = 200000623,
10624
10625 /// Pro->Ala: Pro->Ala substitution.
10626 UNIMOD_Pro__Ala = 200000624,
10627
10628 /// Pro->His: Pro->His substitution.
10629 UNIMOD_Pro__His = 200000625,
10630
10631 /// Pro->Gln: Pro->Gln substitution.
10632 UNIMOD_Pro__Gln = 200000626,
10633
10634 /// Pro->Thr: Pro->Thr substitution.
10635 UNIMOD_Pro__Thr = 200000627,
10636
10637 /// Pro->Arg: Pro->Arg substitution.
10638 UNIMOD_Pro__Arg = 200000628,
10639
10640 /// Pro->Xle: Pro->Leu/Ile substitution.
10641 UNIMOD_Pro__Xle = 200000629,
10642
10643 /// Gln->Pro: Gln->Pro substitution.
10644 UNIMOD_Gln__Pro = 200000630,
10645
10646 /// Gln->Lys: Gln->Lys substitution.
10647 UNIMOD_Gln__Lys = 200000631,
10648
10649 /// Gln->Glu: Gln->Glu substitution.
10650 UNIMOD_Gln__Glu = 200000632,
10651
10652 /// Gln->His: Gln->His substitution.
10653 UNIMOD_Gln__His = 200000633,
10654
10655 /// Gln->Arg: Gln->Arg substitution.
10656 UNIMOD_Gln__Arg = 200000634,
10657
10658 /// Gln->Xle: Gln->Leu/Ile substitution.
10659 UNIMOD_Gln__Xle = 200000635,
10660
10661 /// Arg->Ser: Arg->Ser substitution.
10662 UNIMOD_Arg__Ser = 200000636,
10663
10664 /// Arg->Trp: Arg->Trp substitution.
10665 UNIMOD_Arg__Trp = 200000637,
10666
10667 /// Arg->Thr: Arg->Thr substitution.
10668 UNIMOD_Arg__Thr = 200000638,
10669
10670 /// Arg->Pro: Arg->Pro substitution.
10671 UNIMOD_Arg__Pro = 200000639,
10672
10673 /// Arg->Lys: Arg->Lys substitution.
10674 UNIMOD_Arg__Lys = 200000640,
10675
10676 /// Arg->His: Arg->His substitution.
10677 UNIMOD_Arg__His = 200000641,
10678
10679 /// Arg->Gln: Arg->Gln substitution.
10680 UNIMOD_Arg__Gln = 200000642,
10681
10682 /// Arg->Met: Arg->Met substitution.
10683 UNIMOD_Arg__Met = 200000643,
10684
10685 /// Arg->Cys: Arg->Cys substitution.
10686 UNIMOD_Arg__Cys = 200000644,
10687
10688 /// Arg->Xle: Arg->Leu/Ile substitution.
10689 UNIMOD_Arg__Xle = 200000645,
10690
10691 /// Arg->Gly: Arg->Gly substitution.
10692 UNIMOD_Arg__Gly = 200000646,
10693
10694 /// Ser->Phe: Ser->Phe substitution.
10695 UNIMOD_Ser__Phe = 200000647,
10696
10697 /// Ser->Ala: Ser->Ala substitution.
10698 UNIMOD_Ser__Ala = 200000648,
10699
10700 /// Ser->Trp: Ser->Trp substitution.
10701 UNIMOD_Ser__Trp = 200000649,
10702
10703 /// Ser->Thr: Ser->Thr substitution.
10704 UNIMOD_Ser__Thr = 200000650,
10705
10706 /// Ser->Asn: Ser->Asn substitution.
10707 UNIMOD_Ser__Asn = 200000651,
10708
10709 /// Ser->Pro: Ser->Pro substitution.
10710 UNIMOD_Ser__Pro = 200000652,
10711
10712 /// Ser->Tyr: Ser->Tyr substitution.
10713 UNIMOD_Ser__Tyr = 200000653,
10714
10715 /// Ser->Cys: Ser->Cys substitution.
10716 UNIMOD_Ser__Cys = 200000654,
10717
10718 /// Ser->Arg: Ser->Arg substitution.
10719 UNIMOD_Ser__Arg = 200000655,
10720
10721 /// Ser->Xle: Ser->Leu/Ile substitution.
10722 UNIMOD_Ser__Xle = 200000656,
10723
10724 /// Ser->Gly: Ser->Gly substitution.
10725 UNIMOD_Ser__Gly = 200000657,
10726
10727 /// Thr->Ser: Thr->Ser substitution.
10728 UNIMOD_Thr__Ser = 200000658,
10729
10730 /// Thr->Ala: Thr->Ala substitution.
10731 UNIMOD_Thr__Ala = 200000659,
10732
10733 /// Thr->Asn: Thr->Asn substitution.
10734 UNIMOD_Thr__Asn = 200000660,
10735
10736 /// Thr->Lys: Thr->Lys substitution.
10737 UNIMOD_Thr__Lys = 200000661,
10738
10739 /// Thr->Pro: Thr->Pro substitution.
10740 UNIMOD_Thr__Pro = 200000662,
10741
10742 /// Thr->Met: Thr->Met substitution.
10743 UNIMOD_Thr__Met = 200000663,
10744
10745 /// Thr->Xle: Thr->Leu/Ile substitution.
10746 UNIMOD_Thr__Xle = 200000664,
10747
10748 /// Thr->Arg: Thr->Arg substitution.
10749 UNIMOD_Thr__Arg = 200000665,
10750
10751 /// Val->Phe: Val->Phe substitution.
10752 UNIMOD_Val__Phe = 200000666,
10753
10754 /// Val->Ala: Val->Ala substitution.
10755 UNIMOD_Val__Ala = 200000667,
10756
10757 /// Val->Glu: Val->Glu substitution.
10758 UNIMOD_Val__Glu = 200000668,
10759
10760 /// Val->Met: Val->Met substitution.
10761 UNIMOD_Val__Met = 200000669,
10762
10763 /// Val->Asp: Val->Asp substitution.
10764 UNIMOD_Val__Asp = 200000670,
10765
10766 /// Val->Xle: Val->Leu/Ile substitution.
10767 UNIMOD_Val__Xle = 200000671,
10768
10769 /// Val->Gly: Val->Gly substitution.
10770 UNIMOD_Val__Gly = 200000672,
10771
10772 /// Trp->Ser: Trp->Ser substitution.
10773 UNIMOD_Trp__Ser = 200000673,
10774
10775 /// Trp->Cys: Trp->Cys substitution.
10776 UNIMOD_Trp__Cys = 200000674,
10777
10778 /// Trp->Arg: Trp->Arg substitution.
10779 UNIMOD_Trp__Arg = 200000675,
10780
10781 /// Trp->Gly: Trp->Gly substitution.
10782 UNIMOD_Trp__Gly = 200000676,
10783
10784 /// Trp->Xle: Trp->Leu/Ile substitution.
10785 UNIMOD_Trp__Xle = 200000677,
10786
10787 /// Tyr->Phe: Tyr->Phe substitution.
10788 UNIMOD_Tyr__Phe = 200000678,
10789
10790 /// Tyr->Ser: Tyr->Ser substitution.
10791 UNIMOD_Tyr__Ser = 200000679,
10792
10793 /// Tyr->Asn: Tyr->Asn substitution.
10794 UNIMOD_Tyr__Asn = 200000680,
10795
10796 /// Tyr->His: Tyr->His substitution.
10797 UNIMOD_Tyr__His = 200000681,
10798
10799 /// Tyr->Asp: Tyr->Asp substitution.
10800 UNIMOD_Tyr__Asp = 200000682,
10801
10802 /// Tyr->Cys: Tyr->Cys substitution.
10803 UNIMOD_Tyr__Cys = 200000683,
10804
10805 /// BDMAPP: Mass Defect Tag on lysine e-amino.
10806 UNIMOD_BDMAPP = 200000684,
10807
10808 /// NA-LNO2: Nitroalkylation by Nitro Linoleic Acid.
10809 UNIMOD_NA_LNO2 = 200000685,
10810
10811 /// NA-OA-NO2: Nitroalkylation by Nitro Oleic Acid.
10812 UNIMOD_NA_OA_NO2 = 200000686,
10813
10814 /// ICPL:2H(4): Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, medium form.
10816
10817 /// Label:13C(6)15N(1): 13C(6) 15N(1) Silac label.
10819
10820 /// Label:2H(9)13C(6)15N(2): 13C(6) 15N(2) (D)9 SILAC label.
10822
10823 /// NIC: Nicotinic Acid.
10824 UNIMOD_NIC = 200000697,
10825
10826 /// dNIC: Deuterated Nicotinic Acid.
10827 UNIMOD_dNIC = 200000698,
10828
10829 /// HNE-Delta:H(2)O: Dehydrated 4-hydroxynonenal.
10831
10832 /// 4-ONE: 4-Oxononenal (ONE).
10833 UNIMOD_4_ONE = 200000721,
10834
10835 /// O-Dimethylphosphate: O-Dimethylphosphorylation.
10837
10838 /// O-Methylphosphate: O-Methylphosphorylation.
10840
10841 /// Diethylphosphate: O-Diethylphosphorylation.
10843
10844 /// Ethylphosphate: O-Ethylphosphorylation.
10846
10847 /// O-pinacolylmethylphosphonate: O-pinacolylmethylphosphonylation.
10849
10850 /// Methylphosphonate: Methylphosphonylation.
10852
10853 /// O-Isopropylmethylphosphonate: O-Isopropylmethylphosphonylation.
10855
10856 /// iTRAQ8plex: Representative mass and accurate mass for 113, 114, 116 & 117.
10858
10859 /// iTRAQ8plex:13C(6)15N(2): Accurate mass for 115, 118, 119 & 121.
10861
10862 /// Ethanolamine: Carboxyl modification with ethanolamine.
10864
10865 /// BEMAD_ST: Beta elimination of modified S or T followed by Michael addition of DTT.
10866 UNIMOD_BEMAD_ST = 200000735,
10867
10868 /// BEMAD_C: Beta elimination of alkylated Cys followed by Michael addition of DTT.
10869 UNIMOD_BEMAD_C = 200000736,
10870
10871 /// TMT6plex: Sixplex Tandem Mass Tag®.
10872 UNIMOD_TMT6plex = 200000737,
10873
10874 /// TMT2plex: Duplex Tandem Mass Tag®.
10875 UNIMOD_TMT2plex = 200000738,
10876
10877 /// TMT: Native Tandem Mass Tag®.
10878 UNIMOD_TMT = 200000739,
10879
10880 /// ExacTagThiol: ExacTag Thiol label mass for 2-4-7-10 plex.
10882
10883 /// ExacTagAmine: ExacTag Amine label mass for 2-4-7-10 plex.
10885
10886 /// 4-ONE+Delta:H(-2)O(-1): Dehydrated 4-Oxononenal Michael adduct.
10888
10889 /// NO_SMX_SEMD: Nitroso Sulfamethoxazole Sulphenamide thiol adduct.
10891
10892 /// NO_SMX_SMCT: Nitroso Sulfamethoxazole semimercaptal thiol adduct.
10894
10895 /// NO_SMX_SIMD: Nitroso Sulfamethoxazole Sulfinamide thiol adduct.
10897
10898 /// Malonyl: Malonylation.
10899 UNIMOD_Malonyl = 200000747,
10900
10901 /// 3sulfo: Derivatization by N-term modification using 3-Sulfobenzoic succinimidyl ester.
10902 UNIMOD_3sulfo = 200000748,
10903
10904 /// trifluoro: Trifluoroleucine replacement of leucine.
10905 UNIMOD_trifluoro = 200000750,
10906
10907 /// TNBS: Tri nitro benzene.
10908 UNIMOD_TNBS = 200000751,
10909
10910 /// IDEnT: Isotope Distribution Encoded Tag.
10911 UNIMOD_IDEnT = 200000762,
10912
10913 /// BEMAD_ST:2H(6): Beta elimination of modified S or T followed by Michael addition of labelled DTT.
10915
10916 /// BEMAD_C:2H(6): Beta elimination of alkylated Cys followed by Michael addition of labelled DTT.
10918
10919 /// Met-loss: Removal of initiator methionine from protein N-terminus.
10920 UNIMOD_Met_loss = 200000765,
10921
10922 /// Met-loss+Acetyl: Removal of initiator methionine from protein N-terminus, then acetylation of the new N-terminus.
10924
10925 /// Menadione-HQ: Menadione hydroquinone derivative.
10927
10928 /// Methyl+Acetyl:2H(3): Mono-methylated lysine labelled with Acetyl_heavy.
10930
10931 /// lapachenole: Lapachenole photochemically added to cysteine.
10933
10934 /// Label:13C(5): 13C(5) Silac label.
10936
10937 /// maleimide: Maleimide.
10938 UNIMOD_maleimide = 200000773,
10939
10940 /// Biotin-phenacyl: Alkylation by biotinylated form of phenacyl bromide.
10942
10943 /// Carboxymethyl:13C(2): Iodoacetic acid derivative w/ 13C label.
10945
10946 /// NEM:2H(5): D5 N-ethylmaleimide on cysteines.
10947 UNIMOD_NEM_2H_5_ = 200000776,
10948
10949 /// AEC-MAEC:2H(4): Deuterium cysteamine modification to S or T.
10951
10952 /// Hex(1)HexNAc(1): Hex1HexNAc1.
10954
10955 /// Label:13C(6)+GG: 13C6 labeled ubiquitinylation residue.
10957
10958 /// Biotin:Thermo-21345: Was PentylamineBiotin.
10960
10961 /// Pentylamine: Labeling transglutaminase substrate on glutamine side chain.
10963
10964 /// Biotin:Thermo-21360: Was Biotin-PEO4-hydrazide.
10966
10967 /// Cy3b-maleimide: Fluorescent dye that labels cysteines.
10969
10970 /// Gly-loss+Amide: Enzymatic glycine removal leaving an amidated C-terminus.
10972
10973 /// Xlink:BMOE: Intact or monolink BMOE crosslinker.
10975
10976 /// Xlink:DFDNB: Intact DFDNB crosslinker.
10978
10979 /// TMPP-Ac: Tris(2,4,6-trimethoxyphenyl)phosphonium acetic acid N-hydroxysuccinimide ester derivative.
10980 UNIMOD_TMPP_Ac = 200000827,
10981
10982 /// Dihydroxyimidazolidine: Dihydroxy methylglyoxal adduct.
10984
10985 /// Label:2H(4)+Acetyl: Acetyl 4,4,5,5-D4 Lysine.
10987
10988 /// Label:13C(6)+Acetyl: Acetyl 13C(6) Silac label.
10990
10991 /// Label:13C(6)15N(2)+Acetyl: Acetyl_13C(6) 15N(2) Silac label.
10993
10994 /// Arg->Npo: Arginine replacement by Nitropyrimidyl ornithine.
10995 UNIMOD_Arg__Npo = 200000837,
10996
10997 /// EQIGG: Sumo mutant Smt3-WT tail following trypsin digestion.
10998 UNIMOD_EQIGG = 200000846,
10999
11000 /// Arg2PG: Adduct of phenylglyoxal with Arg.
11001 UNIMOD_Arg2PG = 200000848,
11002
11003 /// cGMP: S-guanylation.
11004 UNIMOD_cGMP = 200000849,
11005
11006 /// cGMP+RMP-loss: S-guanylation-2.
11008
11009 /// Label:2H(4)+GG: Ubiquitination 2H4 lysine.
11011
11012 /// MG-H1: Methylglyoxal-derived hydroimidazolone.
11013 UNIMOD_MG_H1 = 200000859,
11014
11015 /// G-H1: Glyoxal-derived hydroimiadazolone.
11016 UNIMOD_G_H1 = 200000860,
11017
11018 /// ZGB: NHS ester linked Green Fluorescent Bodipy Dye.
11019 UNIMOD_ZGB = 200000861,
11020
11021 /// Label:13C(1)2H(3): SILAC.
11023
11024 /// Label:13C(6)15N(2)+GG: 13C(6) 15N(2) Lysine glygly.
11026
11027 /// ICPL:13C(6)2H(4): Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, +10 Da form.
11029
11030 /// QEQTGG: SUMOylation by SUMO-1.
11031 UNIMOD_QEQTGG = 200000876,
11032
11033 /// QQQTGG: SUMOylation by SUMO-2/3.
11034 UNIMOD_QQQTGG = 200000877,
11035
11036 /// Bodipy: Bodipy modifications onto cysteine.
11037 UNIMOD_Bodipy = 200000878,
11038
11039 /// Biotin:Thermo-21325: Was ChromoBiotin.
11041
11042 /// Label:13C(1)2H(3)+Oxidation: Oxidised methionine 13C(1)2H(3) SILAC label.
11044
11045 /// HydroxymethylOP: 2-ammonio-6-[4-(hydroxymethyl)-3-oxidopyridinium-1-yl]- hexanoate.
11047
11048 /// MDCC: Covalent linkage of maleimidyl coumarin probe (Molecular Probes D-10253).
11049 UNIMOD_MDCC = 200000887,
11050
11051 /// mTRAQ: MTRAQ light.
11052 UNIMOD_mTRAQ = 200000888,
11053
11054 /// mTRAQ:13C(3)15N(1): MTRAQ medium.
11056
11057 /// DyLight-maleimide: Thiol-reactive dye for fluorescence labelling of proteins.
11059
11060 /// Methyl-PEO12-Maleimide: Methyl-PEO12-Maleimide.
11062
11063 /// CarbamidomethylDTT: Carbamidomethylated DTT modification of cysteine.
11065
11066 /// CarboxymethylDTT: Carboxymethylated DTT modification of cysteine.
11068
11069 /// Biotin-PEG-PRA: Biotin polyethyleneoxide (n=3) alkyne.
11071
11072 /// Met->Aha: Methionine replacement by azido homoalanine.
11073 UNIMOD_Met__Aha = 200000896,
11074
11075 /// Label:15N(4): SILAC 15N(4).
11077
11078 /// pyrophospho: Pyrophosphorylation of Ser/Thr.
11080
11081 /// Met->Hpg: Methionine replacement by homopropargylglycine.
11082 UNIMOD_Met__Hpg = 200000899,
11083
11084 /// 4AcAllylGal: 2,3,4,6-tetra-O-Acetyl-1-allyl-alpha-D-galactopyranoside modification of cysteine.
11086
11087 /// DimethylArsino: Reaction with dimethylarsinous (AsIII) acid.
11089
11090 /// Lys->CamCys: Lys->Cys substitution and carbamidomethylation.
11092
11093 /// Phe->CamCys: Phe->Cys substitution and carbamidomethylation.
11095
11096 /// Leu->MetOx: Leu->Met substitution and sulfoxidation.
11098
11099 /// Lys->MetOx: Lys->Met substitution and sulfoxidation.
11101
11102 /// Galactosyl: Gluconoylation.
11104
11105 /// Xlink:SMCC[321]: Monolink of SMCC terminated with 3-(dimethylamino)-1-propylamine.
11107
11108 /// Bacillosamine: 2,4-diacetamido-2,4,6-trideoxyglucopyranose.
11110
11111 /// MTSL: Cys modification by (1-oxyl-2,2,5,5-tetramethyl-3-pyrroline-3-methyl)methanesulfonate (MTSL).
11112 UNIMOD_MTSL = 200000911,
11113
11114 /// HNE-BAHAH: 4-hydroxy-2-nonenal and biotinamidohexanoic acid hydrazide, reduced.
11115 UNIMOD_HNE_BAHAH = 200000912,
11116
11117 /// Methylmalonylation: Methylmalonylation on Serine.
11119
11120 /// Ethoxyformyl: Ethoxyformylation.
11122
11123 /// Label:13C(4)15N(2)+GG: 13C(4) 15N(2) Lysine glygly.
11125
11126 /// ethylamino: Ethyl amino.
11128
11129 /// MercaptoEthanol: 2-OH-ethyl thio-Ser.
11131
11132 /// Ethyl+Deamidated: Deamidation followed by esterification with ethanol.
11134
11135 /// VFQQQTGG: SUMOylation by SUMO-2/3 (formic acid cleavage).
11136 UNIMOD_VFQQQTGG = 200000932,
11137
11138 /// VIEVYQEQTGG: SUMOylation by SUMO-1 (formic acid cleavage).
11140
11141 /// AMTzHexNAc2: Photocleavable Biotin + GalNAz on O-GlcNAc.
11143
11144 /// Atto495Maleimide: High molecular absorption maleimide label for proteins.
11146
11147 /// Chlorination: Chlorination of tyrosine residues.
11149
11150 /// dichlorination: Dichlorination.
11152
11153 /// AROD: Cysteine modifier.
11154 UNIMOD_AROD = 200000938,
11155
11156 /// Cys->methylaminoAla: Carbamidomethylated Cys that undergoes beta-elimination and Michael addition of methylamine.
11158
11159 /// Cys->ethylaminoAla: Carbamidomethylated Cys that undergoes beta-elimination and Michael addition of ethylamine.
11161
11162 /// DNPS: 2,4-Dinitrobenzenesulfenyl.
11163 UNIMOD_DNPS = 200000941,
11164
11165 /// SulfoGMBS: High molecular absorption label for proteins.
11166 UNIMOD_SulfoGMBS = 200000942,
11167
11168 /// DimethylamineGMBS: Modified GMBS X linker.
11170
11171 /// Label:15N(2)2H(9): SILAC label.
11173
11174 /// LG-anhydrolactam: Levuglandinyl-lysine anhydrolactam adduct.
11176
11177 /// LG-pyrrole: Levuglandinyl-lysine pyrrole adduct.
11179
11180 /// LG-anhyropyrrole: Levuglandinyl-lysine anhyropyrrole adduct.
11182
11183 /// 3-deoxyglucosone: Condensation product of 3-deoxyglucosone.
11185
11186 /// Cation:Li: Replacement of proton by lithium.
11187 UNIMOD_Cation_Li = 200000950,
11188
11189 /// Cation:Ca[II]: Replacement of 2 protons by calcium.
11191
11192 /// Cation:Fe[II]: Replacement of 2 protons by iron.
11194
11195 /// Cation:Ni[II]: Replacement of 2 protons by nickel.
11197
11198 /// Cation:Zn[II]: Replacement of 2 protons by zinc.
11200
11201 /// Cation:Ag: Replacement of proton by silver.
11202 UNIMOD_Cation_Ag = 200000955,
11203
11204 /// Cation:Mg[II]: Replacement of 2 protons by magnesium.
11206
11207 /// 2-succinyl: S-(2-succinyl) cysteine.
11209
11210 /// Propargylamine: Propargylamine.
11212
11213 /// Phosphopropargyl: Phospho-propargylamine.
11215
11216 /// SUMO2135: SUMOylation by SUMO-1 after tryptic cleavage.
11217 UNIMOD_SUMO2135 = 200000960,
11218
11219 /// SUMO3549: SUMOylation by SUMO-2/3 after tryptic cleavage.
11220 UNIMOD_SUMO3549 = 200000961,
11221
11222 /// thioacylPA: Membrane protein extraction.
11224
11225 /// maleimide3: Maleimide-3-saccharide.
11227
11228 /// maleimide5: Maleimide-5-saccharide.
11230
11231 /// Puromycin: Puromycin.
11232 UNIMOD_Puromycin = 200000973,
11233
11234 /// Carbofuran: 2,3-dihydro-2,2-dimethyl-7-benzofuranol N-methyl carbamate.
11236
11237 /// BITC: Benzyl isothiocyanate.
11238 UNIMOD_BITC = 200000978,
11239
11240 /// PEITC: Phenethyl isothiocyanate.
11241 UNIMOD_PEITC = 200000979,
11242
11243 /// glucosone: Condensation product of glucosone.
11244 UNIMOD_glucosone = 200000981,
11245
11246 /// cysTMT: Native cysteine-reactive Tandem Mass Tag®.
11247 UNIMOD_cysTMT = 200000984,
11248
11249 /// cysTMT6plex: Cysteine-reactive Sixplex Tandem Mass Tag®.
11251
11252 /// Label:13C(6)+Dimethyl: Dimethyl 13C(6) Silac label.
11254
11255 /// Label:13C(6)15N(2)+Dimethyl: Dimethyl 13C(6)15N(2) Silac label.
11257
11258 /// Ammonium: Replacement of proton with ammonium ion.
11259 UNIMOD_Ammonium = 200000989,
11260
11261 /// ISD_z+2_ion: ISD (z+2)-series.
11263
11264 /// Biotin:Sigma-B1267: Was Biotin-maleimide.
11266
11267 /// Label:15N(1): 15N(1).
11269
11270 /// Label:15N(2): 15N(2).
11272
11273 /// Label:15N(3): 15N(3).
11275
11276 /// sulfo+amino: Aminotyrosine with sulfation.
11278
11279 /// AHA-Alkyne: Azidohomoalanine (AHA) bound to propargylglycine-NH2 (alkyne).
11281
11282 /// AHA-Alkyne-KDDDD: Azidohomoalanine (AHA) bound to DDDDK-propargylglycine-NH2 (alkyne).
11284
11285 /// EGCG1: (-)-epigallocatechin-3-gallate.
11286 UNIMOD_EGCG1 = 200001002,
11287
11288 /// EGCG2: (-)-dehydroepigallocatechin.
11289 UNIMOD_EGCG2 = 200001003,
11290
11291 /// Label:13C(6)15N(4)+Methyl: Monomethylated Arg13C(6) 15N(4).
11293
11294 /// Label:13C(6)15N(4)+Dimethyl: Dimethylated Arg13C(6) 15N(4).
11296
11297 /// Label:13C(6)15N(4)+Methyl:2H(3)13C(1): 2H(3) 13C(1) monomethylated Arg13C(6) 15N(4).
11299
11300 /// Label:13C(6)15N(4)+Dimethyl:2H(6)13C(2): 2H(6) 13C(2) Dimethylated Arg13C(6) 15N(4).
11302
11303 /// Cys->CamSec: Sec Iodoacetamide derivative.
11305
11306 /// Thiazolidine: Formaldehyde adduct.
11308
11309 /// DEDGFLYMVYASQETFG: Addition of DEDGFLYMVYASQETFG.
11311
11312 /// Biotin:Invitrogen-M1602: Nalpha-(3-maleimidylpropionyl)biocytin.
11314
11315 /// glycidamide: Glycidamide adduct.
11317
11318 /// Ahx2+Hsl: C-terminal homoserine lactone and two aminohexanoic acids.
11319 UNIMOD_Ahx2_Hsl = 200001015,
11320
11321 /// DMPO: DMPO spin-trap nitrone adduct.
11322 UNIMOD_DMPO = 200001017,
11323
11324 /// ICDID: Isotope-Coded Dimedone light form.
11325 UNIMOD_ICDID = 200001018,
11326
11327 /// ICDID:2H(6): Isotope-Coded Dimedone heavy form.
11329
11330 /// Xlink:DSS[156]: Water-quenched monolink of DSS/BS3 crosslinker.
11332
11333 /// Xlink:EGS[244]: Water quenched monolink of EGS cross-linker.
11335
11336 /// Xlink:DST[132]: Water quenched monolink of DST crosslinker.
11338
11339 /// Xlink:DTSSP[192]: Water quenched monolink of DSP/DTSSP crosslinker.
11341
11342 /// Xlink:SMCC[237]: Water quenched monolink of SMCC.
11344
11345 /// Xlink:DMP[140]: Water quenched monolink of DMP crosslinker.
11347
11348 /// Xlink:EGS[115]: Cleavage product of EGS protein crosslinks by hydroylamine treatment.
11350
11351 /// Biotin:Thermo-88310: Desthiobiotin modification of lysine.
11353
11354 /// 2-nitrobenzyl: Tyrosine caged with 2-nitrobenzyl (ONB).
11356
11357 /// Cys->SecNEM: N-ethylmaleimide on selenocysteines.
11359
11360 /// Cys->SecNEM:2H(5): D5 N-ethylmaleimide on selenocysteines.
11362
11363 /// Thiadiazole: Thiadiazolydation of Cys.
11365
11366 /// Withaferin: Modification of cystein by withaferin.
11368
11369 /// Biotin:Thermo-88317: Desthiobiotin fluorophosphonate.
11371
11372 /// TAMRA-FP: TAMRA fluorophosphonate modification of serine.
11373 UNIMOD_TAMRA_FP = 200001038,
11374
11375 /// Biotin:Thermo-21901+H2O: Maleimide-Biotin + Water.
11377
11378 /// Deoxyhypusine: Deoxyhypusine.
11380
11381 /// Acetyldeoxyhypusine: Acetyldeoxyhypusine.
11383
11384 /// Acetylhypusine: Acetylhypusine.
11386
11387 /// Ala->Cys: Ala->Cys substitution.
11388 UNIMOD_Ala__Cys = 200001044,
11389
11390 /// Ala->Phe: Ala->Phe substitution.
11391 UNIMOD_Ala__Phe = 200001045,
11392
11393 /// Ala->His: Ala->His substitution.
11394 UNIMOD_Ala__His = 200001046,
11395
11396 /// Ala->Xle: Ala->Leu/Ile substitution.
11397 UNIMOD_Ala__Xle = 200001047,
11398
11399 /// Ala->Lys: Ala->Lys substitution.
11400 UNIMOD_Ala__Lys = 200001048,
11401
11402 /// Ala->Met: Ala->Met substitution.
11403 UNIMOD_Ala__Met = 200001049,
11404
11405 /// Ala->Asn: Ala->Asn substitution.
11406 UNIMOD_Ala__Asn = 200001050,
11407
11408 /// Ala->Gln: Ala->Gln substitution.
11409 UNIMOD_Ala__Gln = 200001051,
11410
11411 /// Ala->Arg: Ala->Arg substitution.
11412 UNIMOD_Ala__Arg = 200001052,
11413
11414 /// Ala->Trp: Ala->Trp substitution.
11415 UNIMOD_Ala__Trp = 200001053,
11416
11417 /// Ala->Tyr: Ala->Tyr substitution.
11418 UNIMOD_Ala__Tyr = 200001054,
11419
11420 /// Cys->Ala: Cys->Ala substitution.
11421 UNIMOD_Cys__Ala = 200001055,
11422
11423 /// Cys->Asp: Cys->Asp substitution.
11424 UNIMOD_Cys__Asp = 200001056,
11425
11426 /// Cys->Glu: Cys->Glu substitution.
11427 UNIMOD_Cys__Glu = 200001057,
11428
11429 /// Cys->His: Cys->His substitution.
11430 UNIMOD_Cys__His = 200001058,
11431
11432 /// Cys->Xle: Cys->Leu/Ile substitution.
11433 UNIMOD_Cys__Xle = 200001059,
11434
11435 /// Cys->Lys: Cys->Lys substitution.
11436 UNIMOD_Cys__Lys = 200001060,
11437
11438 /// Cys->Met: Cys->Met substitution.
11439 UNIMOD_Cys__Met = 200001061,
11440
11441 /// Cys->Asn: Cys->Asn substitution.
11442 UNIMOD_Cys__Asn = 200001062,
11443
11444 /// Cys->Pro: Cys->Pro substitution.
11445 UNIMOD_Cys__Pro = 200001063,
11446
11447 /// Cys->Gln: Cys->Gln substitution.
11448 UNIMOD_Cys__Gln = 200001064,
11449
11450 /// Cys->Thr: Cys->Thr substitution.
11451 UNIMOD_Cys__Thr = 200001065,
11452
11453 /// Cys->Val: Cys->Val substitution.
11454 UNIMOD_Cys__Val = 200001066,
11455
11456 /// Asp->Cys: Asp->Cys substitution.
11457 UNIMOD_Asp__Cys = 200001067,
11458
11459 /// Asp->Phe: Asp->Phe substitution.
11460 UNIMOD_Asp__Phe = 200001068,
11461
11462 /// Asp->Xle: Asp->Leu/Ile substitution.
11463 UNIMOD_Asp__Xle = 200001069,
11464
11465 /// Asp->Lys: Asp->Lys substitution.
11466 UNIMOD_Asp__Lys = 200001070,
11467
11468 /// Asp->Met: Asp->Met substitution.
11469 UNIMOD_Asp__Met = 200001071,
11470
11471 /// Asp->Pro: Asp->Pro substitution.
11472 UNIMOD_Asp__Pro = 200001072,
11473
11474 /// Asp->Gln: Asp->Gln substitution.
11475 UNIMOD_Asp__Gln = 200001073,
11476
11477 /// Asp->Arg: Asp->Arg substitution.
11478 UNIMOD_Asp__Arg = 200001074,
11479
11480 /// Asp->Ser: Asp->Ser substitution.
11481 UNIMOD_Asp__Ser = 200001075,
11482
11483 /// Asp->Thr: Asp->Thr substitution.
11484 UNIMOD_Asp__Thr = 200001076,
11485
11486 /// Asp->Trp: Asp->Trp substitution.
11487 UNIMOD_Asp__Trp = 200001077,
11488
11489 /// Glu->Cys: Glu->Cys substitution.
11490 UNIMOD_Glu__Cys = 200001078,
11491
11492 /// Glu->Phe: Glu->Phe substitution.
11493 UNIMOD_Glu__Phe = 200001079,
11494
11495 /// Glu->His: Glu->His substitution.
11496 UNIMOD_Glu__His = 200001080,
11497
11498 /// Glu->Xle: Glu->Leu/Ile substitution.
11499 UNIMOD_Glu__Xle = 200001081,
11500
11501 /// Glu->Met: Glu->Met substitution.
11502 UNIMOD_Glu__Met = 200001082,
11503
11504 /// Glu->Asn: Glu->Asn substitution.
11505 UNIMOD_Glu__Asn = 200001083,
11506
11507 /// Glu->Pro: Glu->Pro substitution.
11508 UNIMOD_Glu__Pro = 200001084,
11509
11510 /// Glu->Arg: Glu->Arg substitution.
11511 UNIMOD_Glu__Arg = 200001085,
11512
11513 /// Glu->Ser: Glu->Ser substitution.
11514 UNIMOD_Glu__Ser = 200001086,
11515
11516 /// Glu->Thr: Glu->Thr substitution.
11517 UNIMOD_Glu__Thr = 200001087,
11518
11519 /// Glu->Trp: Glu->Trp substitution.
11520 UNIMOD_Glu__Trp = 200001088,
11521
11522 /// Glu->Tyr: Glu->Tyr substitution.
11523 UNIMOD_Glu__Tyr = 200001089,
11524
11525 /// Phe->Ala: Phe->Ala substitution.
11526 UNIMOD_Phe__Ala = 200001090,
11527
11528 /// Phe->Asp: Phe->Asp substitution.
11529 UNIMOD_Phe__Asp = 200001091,
11530
11531 /// Phe->Glu: Phe->Glu substitution.
11532 UNIMOD_Phe__Glu = 200001092,
11533
11534 /// Phe->Gly: Phe->Gly substitution.
11535 UNIMOD_Phe__Gly = 200001093,
11536
11537 /// Phe->His: Phe->His substitution.
11538 UNIMOD_Phe__His = 200001094,
11539
11540 /// Phe->Lys: Phe->Lys substitution.
11541 UNIMOD_Phe__Lys = 200001095,
11542
11543 /// Phe->Met: Phe->Met substitution.
11544 UNIMOD_Phe__Met = 200001096,
11545
11546 /// Phe->Asn: Phe->Asn substitution.
11547 UNIMOD_Phe__Asn = 200001097,
11548
11549 /// Phe->Pro: Phe->Pro substitution.
11550 UNIMOD_Phe__Pro = 200001098,
11551
11552 /// Phe->Gln: Phe->Gln substitution.
11553 UNIMOD_Phe__Gln = 200001099,
11554
11555 /// Phe->Arg: Phe->Arg substitution.
11556 UNIMOD_Phe__Arg = 200001100,
11557
11558 /// Phe->Thr: Phe->Thr substitution.
11559 UNIMOD_Phe__Thr = 200001101,
11560
11561 /// Phe->Trp: Phe->Trp substitution.
11562 UNIMOD_Phe__Trp = 200001102,
11563
11564 /// Gly->Phe: Gly->Phe substitution.
11565 UNIMOD_Gly__Phe = 200001103,
11566
11567 /// Gly->His: Gly->His substitution.
11568 UNIMOD_Gly__His = 200001104,
11569
11570 /// Gly->Xle: Gly->Leu/Ile substitution.
11571 UNIMOD_Gly__Xle = 200001105,
11572
11573 /// Gly->Lys: Gly->Lys substitution.
11574 UNIMOD_Gly__Lys = 200001106,
11575
11576 /// Gly->Met: Gly->Met substitution.
11577 UNIMOD_Gly__Met = 200001107,
11578
11579 /// Gly->Asn: Gly->Asn substitution.
11580 UNIMOD_Gly__Asn = 200001108,
11581
11582 /// Gly->Pro: Gly->Pro substitution.
11583 UNIMOD_Gly__Pro = 200001109,
11584
11585 /// Gly->Gln: Gly->Gln substitution.
11586 UNIMOD_Gly__Gln = 200001110,
11587
11588 /// Gly->Thr: Gly->Thr substitution.
11589 UNIMOD_Gly__Thr = 200001111,
11590
11591 /// Gly->Tyr: Gly->Tyr substitution.
11592 UNIMOD_Gly__Tyr = 200001112,
11593
11594 /// His->Ala: His->Ala substitution.
11595 UNIMOD_His__Ala = 200001113,
11596
11597 /// His->Cys: His->Cys substitution.
11598 UNIMOD_His__Cys = 200001114,
11599
11600 /// His->Glu: His->Glu substitution.
11601 UNIMOD_His__Glu = 200001115,
11602
11603 /// His->Phe: His->Phe substitution.
11604 UNIMOD_His__Phe = 200001116,
11605
11606 /// His->Gly: His->Gly substitution.
11607 UNIMOD_His__Gly = 200001117,
11608
11609 /// His->Lys: His->Lys substitution.
11610 UNIMOD_His__Lys = 200001119,
11611
11612 /// His->Met: His->Met substitution.
11613 UNIMOD_His__Met = 200001120,
11614
11615 /// His->Ser: His->Ser substitution.
11616 UNIMOD_His__Ser = 200001121,
11617
11618 /// His->Thr: His->Thr substitution.
11619 UNIMOD_His__Thr = 200001122,
11620
11621 /// His->Val: His->Val substitution.
11622 UNIMOD_His__Val = 200001123,
11623
11624 /// His->Trp: His->Trp substitution.
11625 UNIMOD_His__Trp = 200001124,
11626
11627 /// Xle->Ala: Leu/Ile->Ala substitution.
11628 UNIMOD_Xle__Ala = 200001125,
11629
11630 /// Xle->Cys: Leu/Ile->Cys substitution.
11631 UNIMOD_Xle__Cys = 200001126,
11632
11633 /// Xle->Asp: Leu/Ile->Asp substitution.
11634 UNIMOD_Xle__Asp = 200001127,
11635
11636 /// Xle->Glu: Leu/Ile->Glu substitution.
11637 UNIMOD_Xle__Glu = 200001128,
11638
11639 /// Xle->Gly: Leu/Ile->Gly substitution.
11640 UNIMOD_Xle__Gly = 200001129,
11641
11642 /// Xle->Tyr: Leu/Ile->Tyr substitution.
11643 UNIMOD_Xle__Tyr = 200001130,
11644
11645 /// Lys->Ala: Lys->Ala substitution.
11646 UNIMOD_Lys__Ala = 200001131,
11647
11648 /// Lys->Cys: Lys->Cys substitution.
11649 UNIMOD_Lys__Cys = 200001132,
11650
11651 /// Lys->Asp: Lys->Asp substitution.
11652 UNIMOD_Lys__Asp = 200001133,
11653
11654 /// Lys->Phe: Lys->Phe substitution.
11655 UNIMOD_Lys__Phe = 200001134,
11656
11657 /// Lys->Gly: Lys->Gly substitution.
11658 UNIMOD_Lys__Gly = 200001135,
11659
11660 /// Lys->His: Lys->His substitution.
11661 UNIMOD_Lys__His = 200001136,
11662
11663 /// Lys->Pro: Lys->Pro substitution.
11664 UNIMOD_Lys__Pro = 200001137,
11665
11666 /// Lys->Ser: Lys->Ser substitution.
11667 UNIMOD_Lys__Ser = 200001138,
11668
11669 /// Lys->Val: Lys->Val substitution.
11670 UNIMOD_Lys__Val = 200001139,
11671
11672 /// Lys->Trp: Lys->Trp substitution.
11673 UNIMOD_Lys__Trp = 200001140,
11674
11675 /// Lys->Tyr: Lys->Tyr substitution.
11676 UNIMOD_Lys__Tyr = 200001141,
11677
11678 /// Met->Ala: Met->Ala substitution.
11679 UNIMOD_Met__Ala = 200001142,
11680
11681 /// Met->Cys: Met->Cys substitution.
11682 UNIMOD_Met__Cys = 200001143,
11683
11684 /// Met->Asp: Met->Asp substitution.
11685 UNIMOD_Met__Asp = 200001144,
11686
11687 /// Met->Glu: Met->Glu substitution.
11688 UNIMOD_Met__Glu = 200001145,
11689
11690 /// Met->Phe: Met->Phe substitution.
11691 UNIMOD_Met__Phe = 200001146,
11692
11693 /// Met->Gly: Met->Gly substitution.
11694 UNIMOD_Met__Gly = 200001147,
11695
11696 /// Met->His: Met->His substitution.
11697 UNIMOD_Met__His = 200001148,
11698
11699 /// Met->Asn: Met->Asn substitution.
11700 UNIMOD_Met__Asn = 200001149,
11701
11702 /// Met->Pro: Met->Pro substitution.
11703 UNIMOD_Met__Pro = 200001150,
11704
11705 /// Met->Gln: Met->Gln substitution.
11706 UNIMOD_Met__Gln = 200001151,
11707
11708 /// Met->Ser: Met->Ser substitution.
11709 UNIMOD_Met__Ser = 200001152,
11710
11711 /// Met->Trp: Met->Trp substitution.
11712 UNIMOD_Met__Trp = 200001153,
11713
11714 /// Met->Tyr: Met->Tyr substitution.
11715 UNIMOD_Met__Tyr = 200001154,
11716
11717 /// Asn->Ala: Asn->Ala substitution.
11718 UNIMOD_Asn__Ala = 200001155,
11719
11720 /// Asn->Cys: Asn->Cys substitution.
11721 UNIMOD_Asn__Cys = 200001156,
11722
11723 /// Asn->Glu: Asn->Glu substitution.
11724 UNIMOD_Asn__Glu = 200001157,
11725
11726 /// Asn->Phe: Asn->Phe substitution.
11727 UNIMOD_Asn__Phe = 200001158,
11728
11729 /// Asn->Gly: Asn->Gly substitution.
11730 UNIMOD_Asn__Gly = 200001159,
11731
11732 /// Asn->Met: Asn->Met substitution.
11733 UNIMOD_Asn__Met = 200001160,
11734
11735 /// Asn->Pro: Asn->Pro substitution.
11736 UNIMOD_Asn__Pro = 200001161,
11737
11738 /// Asn->Gln: Asn->Gln substitution.
11739 UNIMOD_Asn__Gln = 200001162,
11740
11741 /// Asn->Arg: Asn->Arg substitution.
11742 UNIMOD_Asn__Arg = 200001163,
11743
11744 /// Asn->Val: Asn->Val substitution.
11745 UNIMOD_Asn__Val = 200001164,
11746
11747 /// Asn->Trp: Asn->Trp substitution.
11748 UNIMOD_Asn__Trp = 200001165,
11749
11750 /// Pro->Cys: Pro->Cys substitution.
11751 UNIMOD_Pro__Cys = 200001166,
11752
11753 /// Pro->Asp: Pro->Asp substitution.
11754 UNIMOD_Pro__Asp = 200001167,
11755
11756 /// Pro->Glu: Pro->Glu substitution.
11757 UNIMOD_Pro__Glu = 200001168,
11758
11759 /// Pro->Phe: Pro->Phe substitution.
11760 UNIMOD_Pro__Phe = 200001169,
11761
11762 /// Pro->Gly: Pro->Gly substitution.
11763 UNIMOD_Pro__Gly = 200001170,
11764
11765 /// Pro->Lys: Pro->Lys substitution.
11766 UNIMOD_Pro__Lys = 200001171,
11767
11768 /// Pro->Met: Pro->Met substitution.
11769 UNIMOD_Pro__Met = 200001172,
11770
11771 /// Pro->Asn: Pro->Asn substitution.
11772 UNIMOD_Pro__Asn = 200001173,
11773
11774 /// Pro->Val: Pro->Val substitution.
11775 UNIMOD_Pro__Val = 200001174,
11776
11777 /// Pro->Trp: Pro->Trp substitution.
11778 UNIMOD_Pro__Trp = 200001175,
11779
11780 /// Pro->Tyr: Pro->Tyr substitution.
11781 UNIMOD_Pro__Tyr = 200001176,
11782
11783 /// Gln->Ala: Gln->Ala substitution.
11784 UNIMOD_Gln__Ala = 200001177,
11785
11786 /// Gln->Cys: Gln->Cys substitution.
11787 UNIMOD_Gln__Cys = 200001178,
11788
11789 /// Gln->Asp: Gln->Asp substitution.
11790 UNIMOD_Gln__Asp = 200001179,
11791
11792 /// Gln->Phe: Gln->Phe substitution.
11793 UNIMOD_Gln__Phe = 200001180,
11794
11795 /// Gln->Gly: Gln->Gly substitution.
11796 UNIMOD_Gln__Gly = 200001181,
11797
11798 /// Gln->Met: Gln->Met substitution.
11799 UNIMOD_Gln__Met = 200001182,
11800
11801 /// Gln->Asn: Gln->Asn substitution.
11802 UNIMOD_Gln__Asn = 200001183,
11803
11804 /// Gln->Ser: Gln->Ser substitution.
11805 UNIMOD_Gln__Ser = 200001184,
11806
11807 /// Gln->Thr: Gln->Thr substitution.
11808 UNIMOD_Gln__Thr = 200001185,
11809
11810 /// Gln->Val: Gln->Val substitution.
11811 UNIMOD_Gln__Val = 200001186,
11812
11813 /// Gln->Trp: Gln->Trp substitution.
11814 UNIMOD_Gln__Trp = 200001187,
11815
11816 /// Gln->Tyr: Gln->Tyr substitution.
11817 UNIMOD_Gln__Tyr = 200001188,
11818
11819 /// Arg->Ala: Arg->Ala substitution.
11820 UNIMOD_Arg__Ala = 200001189,
11821
11822 /// Arg->Asp: Arg->Asp substitution.
11823 UNIMOD_Arg__Asp = 200001190,
11824
11825 /// Arg->Glu: Arg->Glu substitution.
11826 UNIMOD_Arg__Glu = 200001191,
11827
11828 /// Arg->Asn: Arg->Asn substitution.
11829 UNIMOD_Arg__Asn = 200001192,
11830
11831 /// Arg->Val: Arg->Val substitution.
11832 UNIMOD_Arg__Val = 200001193,
11833
11834 /// Arg->Tyr: Arg->Tyr substitution.
11835 UNIMOD_Arg__Tyr = 200001194,
11836
11837 /// Arg->Phe: Arg->Phe substitution.
11838 UNIMOD_Arg__Phe = 200001195,
11839
11840 /// Ser->Asp: Ser->Asp substitution.
11841 UNIMOD_Ser__Asp = 200001196,
11842
11843 /// Ser->Glu: Ser->Glu substitution.
11844 UNIMOD_Ser__Glu = 200001197,
11845
11846 /// Ser->His: Ser->His substitution.
11847 UNIMOD_Ser__His = 200001198,
11848
11849 /// Ser->Lys: Ser->Lys substitution.
11850 UNIMOD_Ser__Lys = 200001199,
11851
11852 /// Ser->Met: Ser->Met substitution.
11853 UNIMOD_Ser__Met = 200001200,
11854
11855 /// Ser->Gln: Ser->Gln substitution.
11856 UNIMOD_Ser__Gln = 200001201,
11857
11858 /// Ser->Val: Ser->Val substitution.
11859 UNIMOD_Ser__Val = 200001202,
11860
11861 /// Thr->Cys: Thr->Cys substitution.
11862 UNIMOD_Thr__Cys = 200001203,
11863
11864 /// Thr->Asp: Thr->Asp substitution.
11865 UNIMOD_Thr__Asp = 200001204,
11866
11867 /// Thr->Glu: Thr->Glu substitution.
11868 UNIMOD_Thr__Glu = 200001205,
11869
11870 /// Thr->Phe: Thr->Phe substitution.
11871 UNIMOD_Thr__Phe = 200001206,
11872
11873 /// Thr->Gly: Thr->Gly substitution.
11874 UNIMOD_Thr__Gly = 200001207,
11875
11876 /// Thr->His: Thr->His substitution.
11877 UNIMOD_Thr__His = 200001208,
11878
11879 /// Thr->Gln: Thr->Gln substitution.
11880 UNIMOD_Thr__Gln = 200001209,
11881
11882 /// Thr->Val: Thr->Val substitution.
11883 UNIMOD_Thr__Val = 200001210,
11884
11885 /// Thr->Trp: Thr->Trp substitution.
11886 UNIMOD_Thr__Trp = 200001211,
11887
11888 /// Thr->Tyr: Thr->Tyr substitution.
11889 UNIMOD_Thr__Tyr = 200001212,
11890
11891 /// Val->Cys: Val->Cys substitution.
11892 UNIMOD_Val__Cys = 200001213,
11893
11894 /// Val->His: Val->His substitution.
11895 UNIMOD_Val__His = 200001214,
11896
11897 /// Val->Lys: Val->Lys substitution.
11898 UNIMOD_Val__Lys = 200001215,
11899
11900 /// Val->Asn: Val->Asn substitution.
11901 UNIMOD_Val__Asn = 200001216,
11902
11903 /// Val->Pro: Val->Pro substitution.
11904 UNIMOD_Val__Pro = 200001217,
11905
11906 /// Val->Gln: Val->Gln substitution.
11907 UNIMOD_Val__Gln = 200001218,
11908
11909 /// Val->Arg: Val->Arg substitution.
11910 UNIMOD_Val__Arg = 200001219,
11911
11912 /// Val->Ser: Val->Ser substitution.
11913 UNIMOD_Val__Ser = 200001220,
11914
11915 /// Val->Thr: Val->Thr substitution.
11916 UNIMOD_Val__Thr = 200001221,
11917
11918 /// Val->Trp: Val->Trp substitution.
11919 UNIMOD_Val__Trp = 200001222,
11920
11921 /// Val->Tyr: Val->Tyr substitution.
11922 UNIMOD_Val__Tyr = 200001223,
11923
11924 /// Trp->Ala: Trp->Ala substitution.
11925 UNIMOD_Trp__Ala = 200001224,
11926
11927 /// Trp->Asp: Trp->Asp substitution.
11928 UNIMOD_Trp__Asp = 200001225,
11929
11930 /// Trp->Glu: Trp->Glu substitution.
11931 UNIMOD_Trp__Glu = 200001226,
11932
11933 /// Trp->Phe: Trp->Phe substitution.
11934 UNIMOD_Trp__Phe = 200001227,
11935
11936 /// Trp->His: Trp->His substitution.
11937 UNIMOD_Trp__His = 200001228,
11938
11939 /// Trp->Lys: Trp->Lys substitution.
11940 UNIMOD_Trp__Lys = 200001229,
11941
11942 /// Trp->Met: Trp->Met substitution.
11943 UNIMOD_Trp__Met = 200001230,
11944
11945 /// Trp->Asn: Trp->Asn substitution.
11946 UNIMOD_Trp__Asn = 200001231,
11947
11948 /// Trp->Pro: Trp->Pro substitution.
11949 UNIMOD_Trp__Pro = 200001232,
11950
11951 /// Trp->Gln: Trp->Gln substitution.
11952 UNIMOD_Trp__Gln = 200001233,
11953
11954 /// Trp->Thr: Trp->Thr substitution.
11955 UNIMOD_Trp__Thr = 200001234,
11956
11957 /// Trp->Val: Trp->Val substitution.
11958 UNIMOD_Trp__Val = 200001235,
11959
11960 /// Trp->Tyr: Trp->Tyr substitution.
11961 UNIMOD_Trp__Tyr = 200001236,
11962
11963 /// Tyr->Ala: Tyr->Ala substitution.
11964 UNIMOD_Tyr__Ala = 200001237,
11965
11966 /// Tyr->Glu: Tyr->Glu substitution.
11967 UNIMOD_Tyr__Glu = 200001238,
11968
11969 /// Tyr->Gly: Tyr->Gly substitution.
11970 UNIMOD_Tyr__Gly = 200001239,
11971
11972 /// Tyr->Lys: Tyr->Lys substitution.
11973 UNIMOD_Tyr__Lys = 200001240,
11974
11975 /// Tyr->Met: Tyr->Met substitution.
11976 UNIMOD_Tyr__Met = 200001241,
11977
11978 /// Tyr->Pro: Tyr->Pro substitution.
11979 UNIMOD_Tyr__Pro = 200001242,
11980
11981 /// Tyr->Gln: Tyr->Gln substitution.
11982 UNIMOD_Tyr__Gln = 200001243,
11983
11984 /// Tyr->Arg: Tyr->Arg substitution.
11985 UNIMOD_Tyr__Arg = 200001244,
11986
11987 /// Tyr->Thr: Tyr->Thr substitution.
11988 UNIMOD_Tyr__Thr = 200001245,
11989
11990 /// Tyr->Val: Tyr->Val substitution.
11991 UNIMOD_Tyr__Val = 200001246,
11992
11993 /// Tyr->Trp: Tyr->Trp substitution.
11994 UNIMOD_Tyr__Trp = 200001247,
11995
11996 /// Tyr->Xle: Tyr->Leu/Ile substitution.
11997 UNIMOD_Tyr__Xle = 200001248,
11998
11999 /// AHA-SS: Azidohomoalanine coupled to reductively cleaved tag.
12000 UNIMOD_AHA_SS = 200001249,
12001
12002 /// AHA-SS_CAM: Carbamidomethylated form of reductively cleaved tag coupled to azidohomoalanine.
12004
12005 /// Biotin:Thermo-33033: Sulfo-SBED Label Photoreactive Biotin Crosslinker.
12007
12008 /// Biotin:Thermo-33033-H: Sulfo-SBED Label Photoreactive Biotin Crosslinker minus Hydrogen.
12010
12011 /// 2-monomethylsuccinyl: S-(2-monomethylsuccinyl) cysteine.
12013
12014 /// Saligenin: O-toluene.
12015 UNIMOD_Saligenin = 200001254,
12016
12017 /// Cresylphosphate: O-toluyl-phosphorylation.
12019
12020 /// CresylSaligeninPhosphate: Cresyl-Saligenin-phosphorylation.
12022
12023 /// Ub-Br2: Ub Bromide probe addition.
12024 UNIMOD_Ub_Br2 = 200001257,
12025
12026 /// Ub-VME: Ubiquitin vinylmethylester.
12027 UNIMOD_Ub_VME = 200001258,
12028
12029 /// Ub-amide: Ub amide probe addition.
12030 UNIMOD_Ub_amide = 200001260,
12031
12032 /// Ub-fluorescein: Ub Fluorescein probe addition.
12034
12035 /// 2-dimethylsuccinyl: S-(2-dimethylsuccinyl) cysteine.
12037
12038 /// Gly: Addition of Glycine.
12039 UNIMOD_Gly = 200001263,
12040
12041 /// pupylation: Addition of GGE.
12043
12044 /// Label:13C(4): 13C4 Methionine label.
12046
12047 /// Label:13C(4)+Oxidation: Oxidised 13C4 labelled Methionine.
12049
12050 /// HCysThiolactone: N-Homocysteine thiolactone.
12052
12053 /// HCysteinyl: S-homocysteinylation.
12055
12056 /// UgiJoullie: Side reaction of HisTag.
12058
12059 /// Dipyridyl: Cys modified with dipy ligand.
12060 UNIMOD_Dipyridyl = 200001277,
12061
12062 /// Furan: Chemical modification of the iodinated sites of thyroglobulin by Suzuki reaction.
12063 UNIMOD_Furan = 200001278,
12064
12065 /// Difuran: Chemical modification of the diiodinated sites of thyroglobulin by Suzuki reaction.
12066 UNIMOD_Difuran = 200001279,
12067
12068 /// BMP-piperidinol: 1-methyl-3-benzoyl-4-hydroxy-4-phenylpiperidine.
12070
12071 /// UgiJoullieProGly: Side reaction of PG with Side chain of aspartic or glutamic acid.
12073
12074 /// UgiJoullieProGlyProGly: Side reaction of PGPG with Side chain of aspartic or glutamic acid.
12076
12077 /// IMEHex(2)NeuAc(1): Glycosylation with IME linked Hex(2) NeuAc.
12079
12080 /// Arg-loss: Loss of arginine due to transpeptidation.
12081 UNIMOD_Arg_loss = 200001287,
12082
12083 /// Arg: Addition of arginine due to transpeptidation.
12084 UNIMOD_Arg = 200001288,
12085
12086 /// Butyryl: Butyryl.
12087 UNIMOD_Butyryl = 200001289,
12088
12089 /// Dicarbamidomethyl: Double Carbamidomethylation.
12091
12092 /// Dimethyl:2H(6): Dimethyl-Medium.
12094
12095 /// GGQ: SUMOylation leaving GlyGlyGln.
12096 UNIMOD_GGQ = 200001292,
12097
12098 /// QTGG: SUMOylation leaving GlnThrGlyGly.
12099 UNIMOD_QTGG = 200001293,
12100
12101 /// Label:13C(3): 13C3 label for SILAC.
12103
12104 /// Label:13C(3)15N(1): 13C3 15N1 label for SILAC.
12106
12107 /// Label:13C(4)15N(1): 13C4 15N1 label for SILAC.
12109
12110 /// Label:2H(10): 2H(10) label.
12112
12113 /// Label:2H(4)13C(1): Label:2H(4)13C(1).
12115
12116 /// Lys: Addition of lysine due to transpeptidation.
12117 UNIMOD_Lys = 200001301,
12118
12119 /// mTRAQ:13C(6)15N(2): MTRAQ heavy.
12121
12122 /// NeuAc: N-acetyl neuraminic acid.
12123 UNIMOD_NeuAc = 200001303,
12124
12125 /// NeuGc: N-glycoyl neuraminic acid.
12126 UNIMOD_NeuGc = 200001304,
12127
12128 /// Propyl: Propyl.
12129 UNIMOD_Propyl = 200001305,
12130
12131 /// Propyl:2H(6): Propyl:2H(6).
12133
12134 /// Propiophenone: Propiophenone.
12136
12137 /// Delta:H(6)C(3)O(1): Reduced acrolein addition +58.
12139
12140 /// Delta:H(8)C(6)O(1): Reduced acrolein addition +96.
12142
12143 /// biotinAcrolein298: Biotin hydrazide labeled acrolein addition +298.
12145
12146 /// MM-diphenylpentanone: 3-methyl-5-(methylamino)-1,3-diphenylpentan-1-one.
12148
12149 /// EHD-diphenylpentanone: 2-ethyl-3-hydroxy-1,3-diphenylpentan-1-one.
12151
12152 /// Biotin:Thermo-21901+2H2O: Maleimide-Biotin + 2Water.
12154
12155 /// DiLeu4plex115: Accurate mass for DiLeu 115 isobaric tag.
12157
12158 /// DiLeu4plex: Accurate mass for DiLeu 116 isobaric tag.
12160
12161 /// DiLeu4plex117: Accurate mass for DiLeu 117 isobaric tag.
12163
12164 /// DiLeu4plex118: Accurate mass for DiLeu 118 isobaric tag.
12166
12167 /// NEMsulfur: N-ethylmaleimideSulfur.
12168 UNIMOD_NEMsulfur = 200001326,
12169
12170 /// SulfurDioxide: SulfurDioxide.
12172
12173 /// NEMsulfurWater: N-ethylmaleimideSulfurWater.
12175
12176 /// bisANS-sulfonates: BisANS with loss of both sulfonates.
12178
12179 /// DNCB_hapten: Chemical reaction with 2,4-dinitro-1-chloro benzene (DNCB).
12181
12182 /// Biotin:Thermo-21911: Biotin-PEG11-maleimide.
12184
12185 /// iodoTMT: Native iodoacetyl Tandem Mass Tag®.
12186 UNIMOD_iodoTMT = 200001341,
12187
12188 /// iodoTMT6plex: Sixplex iodoacetyl Tandem Mass Tag®.
12190
12191 /// Phosphogluconoylation: Phosphogluconoylation.
12193
12194 /// PS_Hapten: Reaction with phenyl salicylate (PS).
12195 UNIMOD_PS_Hapten = 200001345,
12196
12197 /// Cy3-maleimide: Cy3 Maleimide mono-Reactive dye.
12199
12200 /// benzylguanidine: Modification of the lysine side chain from NH2 to guanidine with a H removed in favor of a benzyl group.
12202
12203 /// CarboxymethylDMAP: A fixed +1 charge tag attached to the N-terminus of peptides.
12205
12206 /// azole: Formation of five membered aromatic heterocycle.
12207 UNIMOD_azole = 200001355,
12208
12209 /// phosphoRibosyl: Phosphate-ribosylation.
12211
12212 /// NEM:2H(5)+H2O: D5 N-ethylmaleimide+water on cysteines.
12214
12215 /// Crotonyl: Crotonylation.
12216 UNIMOD_Crotonyl = 200001363,
12217
12218 /// O-Et-N-diMePhospho: O-ethyl, N-dimethyl phosphate.
12220
12221 /// N-dimethylphosphate: N-dimethylphosphate.
12223
12224 /// dHex(1)Hex(1): Hex1dHex1.
12226
12227 /// Methyl:2H(3)+Acetyl:2H(3): 3-fold methylated lysine labelled with Acetyl_heavy.
12229
12230 /// Label:2H(3)+Oxidation: Oxidised 2H(3) labelled Methionine.
12232
12233 /// Trimethyl:2H(9): 3-fold methylation with deuterated methyl groups.
12235
12236 /// Acetyl:13C(2): Heavy acetylation.
12238
12239 /// dHex(1)Hex(2): Hex2dHex1.
12241
12242 /// dHex(1)Hex(3): Hex3dHex1.
12244
12245 /// dHex(1)Hex(4): Hex4dHex1.
12247
12248 /// dHex(1)Hex(5): Hex5dHex1.
12250
12251 /// dHex(1)Hex(6): Hex6dHex1.
12253
12254 /// methylsulfonylethyl: Reaction with methyl vinyl sulfone.
12256
12257 /// ethylsulfonylethyl: Reaction with ethyl vinyl sulfone.
12259
12260 /// phenylsulfonylethyl: Reaction with phenyl vinyl sulfone.
12262
12263 /// PyridoxalPhosphateH2: PLP bound to lysine reduced by sodium borohydride (NaBH4) to create amine linkage.
12265
12266 /// Homocysteic_acid: Methionine oxidation to homocysteic acid.
12268
12269 /// Hydroxamic_acid: Conversion of carboxylic acid to hydroxamic acid.
12271
12272 /// 3-phosphoglyceryl: 3-phosphoglyceryl.
12274
12275 /// HN2_mustard: Modification by hydroxylated mechloroethamine (HN-2).
12277
12278 /// HN3_mustard: Modification by hydroxylated tris-(2-chloroethyl)amine (HN-3).
12280
12281 /// Oxidation+NEM: N-ethylmaleimide on cysteine sulfenic acid.
12283
12284 /// NHS-fluorescein: Fluorescein-hexanoate-NHS hydrolysis.
12286
12287 /// DiART6plex: Representative mass and accurate mass for 114.
12289
12290 /// DiART6plex115: Accurate mass for DiART6plex 115.
12292
12293 /// DiART6plex116/119: Accurate mass for DiART6plex 116 and 119.
12295
12296 /// DiART6plex117: Accurate mass for DiART6plex 117.
12298
12299 /// DiART6plex118: Accurate mass for DiART6plex 118.
12301
12302 /// Iodoacetanilide: Iodoacetanilide derivative.
12304
12305 /// Iodoacetanilide:13C(6): 13C labelled iodoacetanilide derivative.
12307
12308 /// Dap-DSP: Diaminopimelic acid-DSP monolinked.
12309 UNIMOD_Dap_DSP = 200001399,
12310
12311 /// MurNAc: N-Acetylmuramic acid.
12312 UNIMOD_MurNAc = 200001400,
12313
12314 /// Label:2H(7)15N(4): Label:2H(7)15N(4).
12316
12317 /// Label:2H(6)15N(1): Label:2H(6)15N(1).
12319
12320 /// EEEDVIEVYQEQTGG: Sumoylation by SUMO-1 after Cyanogen bromide (CNBr) cleavage.
12322
12323 /// EDEDTIDVFQQQTGG: Sumoylation by SUMO-2/3 after Cyanogen bromide (CNBr) cleavage.
12325
12326 /// Hex(5)HexNAc(4)NeuAc(2): Hex(5) HexNAc(4) NeuAc(2).
12328
12329 /// Hex(5)HexNAc(4)NeuAc(1): Hex(5) HexNAc(4) NeuAc.
12331
12332 /// dHex(1)Hex(5)HexNAc(4)NeuAc(1): DHex Hex(5) HexNAc(4) NeuAc.
12334
12335 /// dHex(1)Hex(5)HexNAc(4)NeuAc(2): DHex Hex(5) HexNAc(4) NeuAc(2).
12337
12338 /// s-GlcNAc: O3S1HexNAc1.
12339 UNIMOD_s_GlcNAc = 200001412,
12340
12341 /// PhosphoHex(2): H1O3P1Hex2.
12343
12344 /// Trimethyl:13C(3)2H(9): 3-fold methylation with fully labelled methyl groups.
12346
12347 /// 15N-oxobutanoic: Loss of ammonia (15N).
12349
12350 /// spermine: Spermine adduct.
12351 UNIMOD_spermine = 200001420,
12352
12353 /// spermidine: Spermidine adduct.
12355
12356 /// Biotin:Thermo-21330: Biotin_PEG4.
12358
12359 /// Pentose: Pentose.
12360 UNIMOD_Pentose = 200001425,
12361
12362 /// Hex(1)Pent(1): Hex Pent.
12364
12365 /// Hex(1)HexA(1): Hex HexA.
12367
12368 /// Hex(1)Pent(2): Hex Pent(2).
12370
12371 /// Hex(1)HexNAc(1)Phos(1): Hex HexNAc Phos.
12373
12374 /// Hex(1)HexNAc(1)Sulf(1): Hex HexNAc Sulf.
12376
12377 /// Hex(1)NeuAc(1): Hex NeuAc ---OR--- HexNAc Kdn.
12379
12380 /// Hex(1)NeuGc(1): Hex NeuGc.
12382
12383 /// HexNAc(3): HexNAc(3).
12384 UNIMOD_HexNAc_3_ = 200001433,
12385
12386 /// HexNAc(1)NeuAc(1): HexNAc NeuAc.
12388
12389 /// HexNAc(1)NeuGc(1): HexNAc NeuGc.
12391
12392 /// Hex(1)HexNAc(1)dHex(1)Me(1): Hex HexNAc dHex Me.
12394
12395 /// Hex(1)HexNAc(1)dHex(1)Me(2): Hex HexNAc dHex Me(2).
12397
12398 /// Hex(2)HexNAc(1): Hex(2) HexNAc.
12400
12401 /// Hex(1)HexA(1)HexNAc(1): Hex HexA HexNAc.
12403
12404 /// Hex(2)HexNAc(1)Me(1): Hex(2) HexNAc Me.
12406
12407 /// Hex(1)Pent(3): Hex Pent(3).
12409
12410 /// Hex(1)NeuAc(1)Pent(1): Hex NeuAc Pent.
12412
12413 /// Hex(2)HexNAc(1)Sulf(1): Hex(2) HexNAc Sulf.
12415
12416 /// Hex(2)NeuAc(1): Hex(2) NeuAc ---OR--- Hex HexNAc Kdn.
12418
12419 /// dHex(2)Hex(2): Hex2 dHex2.
12421
12422 /// dHex(1)Hex(2)HexA(1): DHex Hex(2) HexA.
12424
12425 /// Hex(1)HexNAc(2)Sulf(1): Hex HexNAc(2) Sulf.
12427
12428 /// Hex(4): Hex(4).
12429 UNIMOD_Hex_4_ = 200001448,
12430
12431 /// dHex(1)Hex(2)HexNAc(2)Pent(1): DHex Hex(2) HexNAc(2) Pent.
12433
12434 /// Hex(2)HexNAc(2)NeuAc(1): Hex(2) HexNAc(2) NeuAc ---OR--- dHex Hex HexNAc(2) NeuGc.
12436
12437 /// Hex(3)HexNAc(2)Pent(1): Hex(3) HexNAc(2) Pent.
12439
12440 /// Hex(4)HexNAc(2): Hex(4) HexNAc(2).
12442
12443 /// dHex(1)Hex(4)HexNAc(1)Pent(1): DHex Hex(4) HexNAc Pent.
12445
12446 /// dHex(1)Hex(3)HexNAc(2)Pent(1): DHex Hex(3) HexNAc(2) Pent.
12448
12449 /// Hex(3)HexNAc(2)NeuAc(1): Hex(3) HexNAc(2) NeuAc.
12451
12452 /// Hex(4)HexNAc(2)Pent(1): Hex(4) HexNAc(2) Pent.
12454
12455 /// Hex(3)HexNAc(3)Pent(1): Hex(3) HexNAc(3) Pent.
12457
12458 /// Hex(5)HexNAc(2)Phos(1): Hex(5) HexNAc(2) Phos.
12460
12461 /// dHex(1)Hex(4)HexNAc(2)Pent(1): DHex Hex(4) HexNAc(2) Pent.
12463
12464 /// Hex(7)HexNAc(1): Hex(7) HexNAc.
12466
12467 /// Hex(4)HexNAc(2)NeuAc(1): Hex(4) HexNAc(2) NeuAc ---OR--- Hex(3) HexNAc(2) dHex NeuGc.
12469
12470 /// dHex(1)Hex(5)HexNAc(2): DHex Hex(5) HexNAc(2).
12472
12473 /// dHex(1)Hex(3)HexNAc(3)Pent(1): DHex Hex(3) HexNAc(3) Pent.
12475
12476 /// Hex(3)HexNAc(4)Sulf(1): Hex(3) HexNAc(4) Sulf.
12478
12479 /// Hex(6)HexNAc(2): Hex(6) HexNAc(2).
12481
12482 /// Hex(4)HexNAc(3)Pent(1): Hex(4) HexNAc(3) Pent.
12484
12485 /// dHex(1)Hex(4)HexNAc(3): DHex Hex(4) HexNAc(3).
12487
12488 /// Hex(5)HexNAc(3): Hex(5) HexNAc(3).
12490
12491 /// Hex(3)HexNAc(4)Pent(1): Hex(3) HexNAc(4) Pent.
12493
12494 /// Hex(6)HexNAc(2)Phos(1): Hex(6) HexNAc(2) Phos.
12496
12497 /// dHex(1)Hex(4)HexNAc(3)Sulf(1): DHex Hex(4) HexNAc(3) Sulf.
12499
12500 /// dHex(1)Hex(5)HexNAc(2)Pent(1): DHex Hex(5) HexNAc(2) Pent.
12502
12503 /// Hex(8)HexNAc(1): Hex(8) HexNAc.
12505
12506 /// dHex(1)Hex(3)HexNAc(3)Pent(2): DHex Hex(3) HexNAc(3) Pent(2).
12508
12509 /// dHex(2)Hex(3)HexNAc(3)Pent(1): DHex(2) Hex(3) HexNAc(3) Pent.
12511
12512 /// dHex(1)Hex(3)HexNAc(4)Sulf(1): DHex Hex(3) HexNAc(4) Sulf.
12514
12515 /// dHex(1)Hex(6)HexNAc(2): DHex Hex(6) HexNAc(2).
12517
12518 /// dHex(1)Hex(4)HexNAc(3)Pent(1): DHex Hex(4) HexNAc(3) Pent.
12520
12521 /// Hex(4)HexNAc(4)Sulf(1): Hex(4) HexNAc(4) Sulf.
12523
12524 /// Hex(7)HexNAc(2): Hex(7) HexNAc(2).
12526
12527 /// dHex(2)Hex(4)HexNAc(3): DHex(2) Hex(4) HexNAc(3).
12529
12530 /// Hex(5)HexNAc(3)Pent(1): Hex(5) HexNAc(3) Pent.
12532
12533 /// Hex(4)HexNAc(3)NeuGc(1): Hex(4) HexNAc(3) NeuGc.
12535
12536 /// dHex(1)Hex(5)HexNAc(3): DHex Hex(5) HexNAc(3).
12538
12539 /// dHex(1)Hex(3)HexNAc(4)Pent(1): DHex Hex(3) HexNAc(4) Pent.
12541
12542 /// Hex(3)HexNAc(5)Sulf(1): Hex(3) HexNAc(5) Sulf.
12544
12545 /// Hex(6)HexNAc(3): Hex(6) HexNAc(3).
12547
12548 /// Hex(3)HexNAc(4)NeuAc(1): Hex(3) HexNAc(4) NeuAc ---OR--- Hex(2) HexNAc(4) dHex NeuGc.
12550
12551 /// Hex(4)HexNAc(4)Pent(1): Hex(4) HexNAc(4) Pent.
12553
12554 /// Hex(7)HexNAc(2)Phos(1): Hex(7) HexNAc(2) Phos.
12556
12557 /// Hex(4)HexNAc(4)Me(2)Pent(1): Hex(4) HexNAc(4) Me(2) Pent.
12559
12560 /// dHex(1)Hex(3)HexNAc(3)Pent(3): DHex Hex(3) HexNAc(3) Pent(3) ---OR--- Hex(4) HexNAc(2) dHex(2) NeuAc.
12562
12563 /// dHex(1)Hex(5)HexNAc(3)Sulf(1): DHex Hex(5) HexNAc(3) Sulf.
12565
12566 /// dHex(2)Hex(3)HexNAc(3)Pent(2): DHex(2) Hex(3) HexNAc(3) Pent(2).
12568
12569 /// Hex(6)HexNAc(3)Phos(1): Hex(6) HexNAc(3) Phos.
12571
12572 /// Hex(4)HexNAc(5): Hex(4) HexNAc(5).
12574
12575 /// dHex(3)Hex(3)HexNAc(3)Pent(1): DHex(3) Hex(3) HexNAc(3) Pent.
12577
12578 /// dHex(2)Hex(4)HexNAc(3)Pent(1): DHex(2) Hex(4) HexNAc(3) Pent.
12580
12581 /// dHex(1)Hex(4)HexNAc(4)Sulf(1): DHex Hex(4) HexNAc(4) Sulf.
12583
12584 /// dHex(1)Hex(7)HexNAc(2): DHex Hex(7) HexNAc(2).
12586
12587 /// dHex(1)Hex(4)HexNAc(3)NeuAc(1): DHex Hex(4) HexNAc(3) NeuAc ---OR--- dHex(2) Hex(3) HexNAc(3) NeuGc.
12589
12590 /// Hex(7)HexNAc(2)Phos(2): Hex(7) HexNAc(2) Phos(2).
12592
12593 /// Hex(5)HexNAc(4)Sulf(1): Hex(5) HexNAc(4) Sulf.
12595
12596 /// Hex(8)HexNAc(2): Hex(8) HexNAc(2).
12598
12599 /// dHex(1)Hex(3)HexNAc(4)Pent(2): DHex Hex(3) HexNAc(4) Pent(2).
12601
12602 /// dHex(1)Hex(4)HexNAc(3)NeuGc(1): DHex Hex(4) HexNAc(3) NeuGc ---OR--- Hex(5) HexNAc(3) NeuAc.
12604
12605 /// dHex(2)Hex(3)HexNAc(4)Pent(1): DHex(2) Hex(3) HexNAc(4) Pent.
12607
12608 /// dHex(1)Hex(3)HexNAc(5)Sulf(1): DHex Hex(3) HexNAc(5) Sulf.
12610
12611 /// dHex(1)Hex(6)HexNAc(3): DHex Hex(6) HexNAc(3).
12613
12614 /// dHex(1)Hex(3)HexNAc(4)NeuAc(1): DHex Hex(3) HexNAc(4) NeuAc.
12616
12617 /// dHex(3)Hex(3)HexNAc(4): DHex(3) Hex(3) HexNAc(4).
12619
12620 /// dHex(1)Hex(4)HexNAc(4)Pent(1): DHex Hex(4) HexNAc(4) Pent.
12622
12623 /// Hex(4)HexNAc(5)Sulf(1): Hex(4) HexNAc(5) Sulf.
12625
12626 /// Hex(7)HexNAc(3): Hex(7) HexNAc(3).
12628
12629 /// dHex(1)Hex(4)HexNAc(3)NeuAc(1)Sulf(1): DHex Hex(4) HexNAc(3) NeuAc Sulf.
12631
12632 /// Hex(5)HexNAc(4)Me(2)Pent(1): Hex(5) HexNAc(4) Me(2) Pent.
12634
12635 /// Hex(3)HexNAc(6)Sulf(1): Hex(3) HexNAc(6) Sulf.
12637
12638 /// dHex(1)Hex(6)HexNAc(3)Sulf(1): DHex Hex(6) HexNAc(3) Sulf.
12640
12641 /// dHex(1)Hex(4)HexNAc(5): DHex Hex(4) HexNAc(5).
12643
12644 /// dHex(1)Hex(5)HexA(1)HexNAc(3)Sulf(1): DHex Hex(5) HexA HexNAc(3) Sulf.
12646
12647 /// Hex(7)HexNAc(3)Phos(1): Hex(7) HexNAc(3) Phos.
12649
12650 /// Hex(6)HexNAc(4)Me(3): Hex(6) HexNAc(4) Me(3).
12652
12653 /// dHex(2)Hex(4)HexNAc(4)Sulf(1): DHex(2) Hex(4) HexNAc(4) Sulf.
12655
12656 /// Hex(4)HexNAc(3)NeuAc(2): Hex(4) HexNAc(3) NeuAc(2).
12658
12659 /// dHex(1)Hex(3)HexNAc(4)Pent(3): DHex Hex(3) HexNAc(4) Pent(3).
12661
12662 /// dHex(2)Hex(5)HexNAc(3)Pent(1): DHex(2) Hex(5) HexNAc(3) Pent.
12664
12665 /// dHex(1)Hex(5)HexNAc(4)Sulf(1): DHex Hex(5) HexNAc(4) Sulf.
12667
12668 /// dHex(2)Hex(3)HexNAc(4)Pent(2): DHex(2) Hex(3) HexNAc(4) Pent(2).
12670
12671 /// dHex(1)Hex(5)HexNAc(3)NeuAc(1): DHex Hex(5) HexNAc(3) NeuAc.
12673
12674 /// Hex(3)HexNAc(6)Sulf(2): Hex(3) HexNAc(6) Sulf(2).
12676
12677 /// Hex(9)HexNAc(2): Hex(9) HexNAc(2).
12679
12680 /// Hex(4)HexNAc(6): Hex(4) HexNAc(6).
12682
12683 /// dHex(3)Hex(3)HexNAc(4)Pent(1): DHex(3) Hex(3) HexNAc(4) Pent.
12685
12686 /// dHex(1)Hex(5)HexNAc(3)NeuGc(1): DHex Hex(5) HexNAc(3) NeuGc ---OR--- Hex(6) HexNAc(3) NeuAc.
12688
12689 /// dHex(2)Hex(4)HexNAc(4)Pent(1): DHex(2) Hex(4) HexNAc(4) Pent.
12691
12692 /// dHex(1)Hex(4)HexNAc(5)Sulf(1): DHex Hex(4) HexNAc(5) Sulf.
12694
12695 /// dHex(1)Hex(7)HexNAc(3): DHex Hex(7) HexNAc(3).
12697
12698 /// dHex(1)Hex(5)HexNAc(4)Pent(1): DHex Hex(5) HexNAc(4) Pent.
12700
12701 /// dHex(1)Hex(5)HexA(1)HexNAc(3)Sulf(2): DHex Hex(5) HexA HexNAc(3) Sulf(2).
12703
12704 /// Hex(3)HexNAc(7): Hex(3) HexNAc(7).
12706
12707 /// dHex(2)Hex(5)HexNAc(4): DHex(2) Hex(5) HexNAc(4).
12709
12710 /// dHex(2)Hex(4)HexNAc(3)NeuAc(1)Sulf(1): DHex(2) Hex(4) HexNAc(3) NeuAc Sulf.
12712
12713 /// dHex(1)Hex(5)HexNAc(4)Sulf(2): DHex Hex(5) HexNAc(4) Sulf(2).
12715
12716 /// dHex(1)Hex(5)HexNAc(4)Me(2)Pent(1): DHex Hex(5) HexNAc(4) Me(2) Pent.
12718
12719 /// Hex(5)HexNAc(4)NeuGc(1): Hex(5) HexNAc(4) NeuGc.
12721
12722 /// dHex(1)Hex(3)HexNAc(6)Sulf(1): DHex Hex(3) HexNAc(6) Sulf.
12724
12725 /// dHex(1)Hex(6)HexNAc(4): DHex Hex(6) HexNAc(4).
12727
12728 /// dHex(1)Hex(5)HexNAc(3)NeuAc(1)Sulf(1): DHex Hex(5) HexNAc(3) NeuAc Sulf.
12730
12731 /// Hex(7)HexNAc(4): Hex(7) HexNAc(4).
12733
12734 /// dHex(1)Hex(5)HexNAc(3)NeuGc(1)Sulf(1): DHex Hex(5) HexNAc(3) NeuGc Sulf.
12736
12737 /// Hex(4)HexNAc(5)NeuAc(1): Hex(4) HexNAc(5) NeuAc.
12739
12740 /// Hex(6)HexNAc(4)Me(3)Pent(1): Hex(6) HexNAc(4) Me(3) Pent.
12742
12743 /// dHex(1)Hex(7)HexNAc(3)Sulf(1): DHex Hex(7) HexNAc(3) Sulf.
12745
12746 /// dHex(1)Hex(7)HexNAc(3)Phos(1): DHex Hex(7) HexNAc(3) Phos.
12748
12749 /// dHex(1)Hex(5)HexNAc(5): DHex Hex(5) HexNAc(5).
12751
12752 /// dHex(1)Hex(4)HexNAc(4)NeuAc(1)Sulf(1): DHex Hex(4) HexNAc(4) NeuAc Sulf.
12754
12755 /// dHex(3)Hex(4)HexNAc(4)Sulf(1): DHex(3) Hex(4) HexNAc(4) Sulf.
12757
12758 /// Hex(3)HexNAc(7)Sulf(1): Hex(3) HexNAc(7) Sulf.
12760
12761 /// Hex(6)HexNAc(5): Hex(6) HexNAc(5).
12763
12764 /// Hex(5)HexNAc(4)NeuAc(1)Sulf(1): Hex(5) HexNAc(4) NeuAc Sulf.
12766
12767 /// Hex(3)HexNAc(6)NeuAc(1): Hex(3) HexNAc(6) NeuAc.
12769
12770 /// dHex(2)Hex(3)HexNAc(6): DHex(2) Hex(3) HexNAc(6).
12772
12773 /// Hex(1)HexNAc(1)NeuGc(1): Hex HexNAc NeuGc.
12775
12776 /// dHex(1)Hex(2)HexNAc(1): DHex Hex(2) HexNAc.
12778
12779 /// HexNAc(3)Sulf(1): HexNAc(3) Sulf.
12781
12782 /// Hex(3)HexNAc(1): Hex(3) HexNAc.
12784
12785 /// Hex(1)HexNAc(1)Kdn(1)Sulf(1): Hex HexNAc Kdn Sulf.
12787
12788 /// HexNAc(2)NeuAc(1): HexNAc(2) NeuAc.
12790
12791 /// HexNAc(1)Kdn(2): HexNAc Kdn(2) ---OR--- Hex(2) HexNAc HexA.
12793
12794 /// Hex(3)HexNAc(1)Me(1): Hex(3) HexNAc Me.
12796
12797 /// Hex(2)HexA(1)Pent(1)Sulf(1): Hex(2) HexA Pent Sulf.
12799
12800 /// HexNAc(2)NeuGc(1): HexNAc(2) NeuGc.
12802
12803 /// Hex(4)Phos(1): Hex(4) Phos.
12805
12806 /// Hex(1)HexNAc(1)NeuAc(1)Sulf(1): Hex HexNAc NeuAc Sulf.
12808
12809 /// Hex(1)HexA(1)HexNAc(2): Hex HexA HexNAc(2).
12811
12812 /// dHex(1)Hex(2)HexNAc(1)Sulf(1): DHex Hex(2) HexNAc Sulf.
12814
12815 /// dHex(1)HexNAc(3): DHex HexNAc(3).
12817
12818 /// dHex(1)Hex(1)HexNAc(1)Kdn(1): DHex Hex HexNAc Kdn ---OR--- Hex(2) dHex NeuAc.
12820
12821 /// Hex(1)HexNAc(3): Hex HexNAc(3).
12823
12824 /// HexNAc(2)NeuAc(1)Sulf(1): HexNAc(2) NeuAc Sulf.
12826
12827 /// dHex(2)Hex(3): DHex(2) Hex(3).
12829
12830 /// Hex(2)HexA(1)HexNAc(1)Sulf(1): Hex(2) HexA HexNAc Sulf.
12832
12833 /// dHex(2)Hex(2)HexA(1): DHex(2) Hex(2) HexA.
12835
12836 /// dHex(1)Hex(1)HexNAc(2)Sulf(1): DHex Hex HexNAc(2) Sulf.
12838
12839 /// dHex(1)Hex(1)HexNAc(1)NeuAc(1): DHex Hex HexNAc NeuAc.
12841
12842 /// Hex(2)HexNAc(2)Sulf(1): Hex(2) HexNAc(2) Sulf.
12844
12845 /// Hex(5): Hex(5).
12846 UNIMOD_Hex_5_ = 200001590,
12847
12848 /// HexNAc(4): HexNAc(4).
12849 UNIMOD_HexNAc_4_ = 200001591,
12850
12851 /// HexNAc(1)NeuGc(2): HexNAc NeuGc(2).
12853
12854 /// dHex(1)Hex(1)HexNAc(1)NeuGc(1): DHex Hex HexNAc NeuGc ---OR--- Hex(2) HexNAc NeuAc.
12856
12857 /// dHex(2)Hex(2)HexNAc(1): DHex(2) Hex(2) HexNAc.
12859
12860 /// Hex(2)HexNAc(1)NeuGc(1): Hex(2) HexNAc NeuGc.
12862
12863 /// dHex(1)Hex(3)HexNAc(1): DHex Hex(3) HexNAc.
12865
12866 /// dHex(1)Hex(2)HexA(1)HexNAc(1): DHex Hex(2) HexA HexNAc.
12868
12869 /// Hex(1)HexNAc(3)Sulf(1): Hex HexNAc(3) Sulf.
12871
12872 /// Hex(4)HexNAc(1): Hex(4) HexNAc.
12874
12875 /// Hex(1)HexNAc(2)NeuAc(1): Hex HexNAc(2) NeuAc.
12877
12878 /// Hex(1)HexNAc(2)NeuGc(1): Hex HexNAc(2) NeuGc.
12880
12881 /// Hex(5)Phos(1): Hex(5) Phos.
12883
12884 /// dHex(2)Hex(1)HexNAc(1)Kdn(1): DHex(2) Hex HexNAc Kdn.
12886
12887 /// dHex(1)Hex(3)HexNAc(1)Sulf(1): DHex Hex(3) HexNAc Sulf.
12889
12890 /// dHex(1)Hex(1)HexNAc(3): DHex Hex HexNAc(3).
12892
12893 /// dHex(1)Hex(2)HexA(1)HexNAc(1)Sulf(1): DHex Hex(2) HexA HexNAc Sulf.
12895
12896 /// Hex(2)HexNAc(3): Hex(2) HexNAc(3).
12898
12899 /// Hex(1)HexNAc(2)NeuAc(1)Sulf(1): Hex HexNAc(2) NeuAc Sulf.
12901
12902 /// dHex(2)Hex(4): DHex(2) Hex(4).
12904
12905 /// dHex(2)HexNAc(2)Kdn(1): DHex(2) HexNAc(2) Kdn.
12907
12908 /// dHex(1)Hex(2)HexNAc(2)Sulf(1): DHex Hex(2) HexNAc(2) Sulf.
12910
12911 /// dHex(1)HexNAc(4): DHex HexNAc(4).
12913
12914 /// Hex(1)HexNAc(1)NeuAc(1)NeuGc(1): Hex HexNAc NeuAc NeuGc.
12916
12917 /// dHex(1)Hex(1)HexNAc(2)Kdn(1): DHex Hex HexNAc(2) Kdn ---OR--- Hex(2) HexNAc dHex NeuAc.
12919
12920 /// Hex(1)HexNAc(1)NeuGc(2): Hex HexNAc NeuGc(2).
12922
12923 /// Hex(1)HexNAc(1)NeuAc(2)Ac(1): Ac Hex HexNAc NeuAc(2).
12925
12926 /// dHex(2)Hex(2)HexA(1)HexNAc(1): DHex(2) Hex(2) HexA HexNAc.
12928
12929 /// dHex(1)Hex(1)HexNAc(3)Sulf(1): DHex Hex HexNAc(3) Sulf.
12931
12932 /// Hex(2)HexA(1)NeuAc(1)Pent(1)Sulf(1): Hex(2) HexA NeuAc Pent Sulf.
12934
12935 /// dHex(1)Hex(1)HexNAc(2)NeuAc(1): DHex Hex HexNAc(2) NeuAc.
12937
12938 /// dHex(1)Hex(3)HexA(1)HexNAc(1): DHex Hex(3) HexA HexNAc.
12940
12941 /// Hex(2)HexNAc(3)Sulf(1): Hex(2) HexNAc(3) Sulf.
12943
12944 /// Hex(5)HexNAc(1): Hex(5) HexNAc.
12946
12947 /// HexNAc(5): HexNAc(5).
12948 UNIMOD_HexNAc_5_ = 200001628,
12949
12950 /// Hex(1)HexNAc(1)NeuAc(2)Ac(2): Ac(2) Hex HexNAc NeuAc(2).
12952
12953 /// Hex(2)HexNAc(2)NeuGc(1): Hex(2) HexNAc(2) NeuGc.
12955
12956 /// Hex(5)Phos(3): Hex(5) Phos(3).
12958
12959 /// Hex(6)Phos(1): Hex(6) Phos.
12961
12962 /// dHex(1)Hex(2)HexA(1)HexNAc(2): DHex Hex(2) HexA HexNAc(2).
12964
12965 /// dHex(2)Hex(3)HexNAc(1)Sulf(1): DHex(2) Hex(3) HexNAc Sulf.
12967
12968 /// Hex(1)HexNAc(3)NeuAc(1): Hex HexNAc(3) NeuAc.
12970
12971 /// dHex(2)Hex(1)HexNAc(3): DHex(2) Hex HexNAc(3).
12973
12974 /// Hex(1)HexNAc(3)NeuGc(1): Hex HexNAc(3) NeuGc.
12976
12977 /// dHex(1)Hex(1)HexNAc(2)NeuAc(1)Sulf(1): DHex Hex HexNAc(2) NeuAc Sulf.
12979
12980 /// dHex(1)Hex(3)HexA(1)HexNAc(1)Sulf(1): DHex Hex(3) HexA HexNAc Sulf.
12982
12983 /// dHex(1)Hex(1)HexA(1)HexNAc(3): DHex Hex HexA HexNAc(3).
12985
12986 /// Hex(2)HexNAc(2)NeuAc(1)Sulf(1): Hex(2) HexNAc(2) NeuAc Sulf.
12988
12989 /// dHex(2)Hex(2)HexNAc(2)Sulf(1): DHex(2) Hex(2) HexNAc(2) Sulf.
12991
12992 /// dHex(2)Hex(1)HexNAc(2)Kdn(1): DHex(2) Hex HexNAc(2) Kdn ---OR--- Hex(2) HexNAc dHex(2) NeuAc.
12994
12995 /// dHex(1)Hex(1)HexNAc(4): DHex Hex HexNAc(4).
12997
12998 /// Hex(2)HexNAc(4): Hex(2) HexNAc(4).
13000
13001 /// Hex(2)HexNAc(1)NeuGc(2): Hex(2) HexNAc NeuGc(2).
13003
13004 /// dHex(2)Hex(4)HexNAc(1): DHex(2) Hex(4) HexNAc.
13006
13007 /// Hex(1)HexNAc(2)NeuAc(2): Hex HexNAc(2) NeuAc(2).
13009
13010 /// dHex(2)Hex(1)HexNAc(2)NeuAc(1): DHex(2) Hex HexNAc(2) NeuAc.
13012
13013 /// dHex(1)Hex(2)HexNAc(3)Sulf(1): DHex Hex(2) HexNAc(3) Sulf.
13015
13016 /// dHex(1)HexNAc(5): DHex HexNAc(5).
13018
13019 /// dHex(2)Hex(1)HexNAc(2)NeuGc(1): DHex(2) Hex HexNAc(2) NeuGc ---OR--- Hex(2) HexNAc(2) dHex NeuAc ---OR--- Hex HexNAc(3) dHex Kdn.
13021
13022 /// dHex(3)Hex(2)HexNAc(2): DHex(3) Hex(2) HexNAc(2).
13024
13025 /// Hex(3)HexNAc(3)Sulf(1): Hex(3) HexNAc(3) Sulf.
13027
13028 /// dHex(2)Hex(2)HexNAc(2)Sulf(2): DHex(2) Hex(2) HexNAc(2) Sulf(2).
13030
13031 /// dHex(1)Hex(2)HexNAc(2)NeuGc(1): DHex Hex(2) HexNAc(2) NeuGc ---OR--- Hex(3) HexNAc(2) NeuAc.
13033
13034 /// dHex(1)Hex(1)HexNAc(3)NeuAc(1): DHex Hex HexNAc(3) NeuAc.
13036
13037 /// Hex(6)Phos(3): Hex(6) Phos(3).
13039
13040 /// dHex(1)Hex(3)HexA(1)HexNAc(2): DHex Hex(3) HexA HexNAc(2).
13042
13043 /// dHex(1)Hex(1)HexNAc(3)NeuGc(1): DHex Hex HexNAc(3) NeuGc ---OR--- Hex(2) HexNAc(3) NeuAc.
13045
13046 /// Hex(1)HexNAc(2)NeuAc(2)Sulf(1): Hex HexNAc(2) NeuAc(2) Sulf.
13048
13049 /// dHex(2)Hex(3)HexA(1)HexNAc(1)Sulf(1): DHex(2) Hex(3) HexA HexNAc Sulf.
13051
13052 /// Hex(1)HexNAc(1)NeuAc(3): Hex HexNAc NeuAc(3).
13054
13055 /// Hex(2)HexNAc(3)NeuGc(1): Hex(2) HexNAc(3) NeuGc.
13057
13058 /// dHex(1)Hex(2)HexNAc(2)NeuAc(1)Sulf(1): DHex Hex(2) HexNAc(2) NeuAc Sulf.
13060
13061 /// dHex(3)Hex(1)HexNAc(2)Kdn(1): DHex(3) Hex HexNAc(2) Kdn.
13063
13064 /// dHex(2)Hex(3)HexNAc(2)Sulf(1): DHex(2) Hex(3) HexNAc(2) Sulf.
13066
13067 /// dHex(2)Hex(2)HexNAc(2)Kdn(1): DHex(2) Hex(2) HexNAc(2) Kdn.
13069
13070 /// dHex(2)Hex(2)HexA(1)HexNAc(2)Sulf(1): DHex(2) Hex(2) HexA HexNAc(2) Sulf.
13072
13073 /// dHex(1)Hex(2)HexNAc(4): DHex Hex(2) HexNAc(4).
13075
13076 /// Hex(1)HexNAc(1)NeuGc(3): Hex HexNAc NeuGc(3).
13078
13079 /// dHex(1)Hex(1)HexNAc(3)NeuAc(1)Sulf(1): DHex Hex HexNAc(3) NeuAc Sulf.
13081
13082 /// dHex(1)Hex(3)HexA(1)HexNAc(2)Sulf(1): DHex Hex(3) HexA HexNAc(2) Sulf.
13084
13085 /// dHex(1)Hex(1)HexNAc(2)NeuAc(2): DHex Hex HexNAc(2) NeuAc(2).
13087
13088 /// dHex(3)HexNAc(3)Kdn(1): DHex(3) HexNAc(3) Kdn.
13090
13091 /// Hex(2)HexNAc(3)NeuAc(1)Sulf(1): Hex(2) HexNAc(3) NeuAc Sulf.
13093
13094 /// dHex(2)Hex(2)HexNAc(3)Sulf(1): DHex(2) Hex(2) HexNAc(3) Sulf.
13096
13097 /// dHex(2)HexNAc(5): DHex(2) HexNAc(5).
13099
13100 /// Hex(2)HexNAc(2)NeuAc(2): Hex(2) HexNAc(2) NeuAc(2).
13102
13103 /// dHex(2)Hex(2)HexNAc(2)NeuAc(1): DHex(2) Hex(2) HexNAc(2) NeuAc ---OR--- Hex HexNAc(3) dHex(2) Kdn.
13105
13106 /// dHex(1)Hex(3)HexNAc(3)Sulf(1): DHex Hex(3) HexNAc(3) Sulf.
13108
13109 /// dHex(2)Hex(2)HexNAc(2)NeuGc(1): DHex(2) Hex(2) HexNAc(2) NeuGc ---OR--- Hex(3) HexNAc(2) dHex NeuAc ---OR--- Hex(2) HexNAc(3) dHex Kdn.
13111
13112 /// Hex(2)HexNAc(5): Hex(2) HexNAc(5).
13114
13115 /// dHex(1)Hex(3)HexNAc(2)NeuGc(1): DHex Hex(3) HexNAc(2) NeuGc.
13117
13118 /// Hex(1)HexNAc(3)NeuAc(2): Hex HexNAc(3) NeuAc(2).
13120
13121 /// dHex(1)Hex(2)HexNAc(3)NeuAc(1): DHex Hex(2) HexNAc(3) NeuAc.
13123
13124 /// dHex(3)Hex(2)HexNAc(3): DHex(3) Hex(2) HexNAc(3).
13126
13127 /// Hex(7)Phos(3): Hex(7) Phos(3).
13129
13130 /// dHex(1)Hex(4)HexA(1)HexNAc(2): DHex Hex(4) HexA HexNAc(2).
13132
13133 /// Hex(3)HexNAc(3)NeuAc(1): Hex(3) HexNAc(3) NeuAc ---OR--- Hex(2) HexNAc(3) dHex NeuGc ---OR--- Hex(2) HexNAc(4) Kdn.
13135
13136 /// dHex(1)Hex(3)HexA(2)HexNAc(2): DHex Hex(3) HexA(2) HexNAc(2).
13138
13139 /// Hex(2)HexNAc(2)NeuAc(2)Sulf(1): Hex(2) HexNAc(2) NeuAc(2) Sulf.
13141
13142 /// dHex(2)Hex(2)HexNAc(2)NeuAc(1)Sulf(1): DHex(2) Hex(2) HexNAc(2) NeuAc Sulf.
13144
13145 /// Hex(3)HexNAc(3)NeuGc(1): Hex(3) HexNAc(3) NeuGc.
13147
13148 /// dHex(4)Hex(1)HexNAc(2)Kdn(1): DHex(4) Hex HexNAc(2) Kdn.
13150
13151 /// dHex(3)Hex(2)HexNAc(2)Kdn(1): DHex(3) Hex(2) HexNAc(2) Kdn.
13153
13154 /// dHex(3)Hex(2)HexA(1)HexNAc(2)Sulf(1): DHex(3) Hex(2) HexA HexNAc(2) Sulf.
13156
13157 /// Hex(2)HexNAc(4)NeuAc(1): Hex(2) HexNAc(4) NeuAc.
13159
13160 /// dHex(2)Hex(2)HexNAc(4): DHex(2) Hex(2) HexNAc(4).
13162
13163 /// dHex(2)Hex(3)HexA(1)HexNAc(2)Sulf(1): DHex(2) Hex(3) HexA HexNAc(2) Sulf.
13165
13166 /// dHex(4)HexNAc(3)Kdn(1): DHex(4) HexNAc(3) Kdn.
13168
13169 /// Hex(2)HexNAc(1)NeuGc(3): Hex(2) HexNAc NeuGc(3).
13171
13172 /// dHex(4)Hex(1)HexNAc(1)Kdn(2): DHex(4) Hex HexNAc Kdn(2).
13174
13175 /// dHex(1)Hex(2)HexNAc(3)NeuAc(1)Sulf(1): DHex Hex(2) HexNAc(3) NeuAc Sulf.
13177
13178 /// dHex(1)Hex(2)HexNAc(2)NeuAc(2): DHex Hex(2) HexNAc(2) NeuAc(2).
13180
13181 /// dHex(3)Hex(1)HexNAc(3)Kdn(1): DHex(3) Hex HexNAc(3) Kdn.
13183
13184 /// Hex(3)HexNAc(3)NeuAc(1)Sulf(1): Hex(3) HexNAc(3) NeuAc Sulf.
13186
13187 /// Hex(3)HexNAc(2)NeuAc(2): Hex(3) HexNAc(2) NeuAc(2).
13189
13190 /// Hex(3)HexNAc(3)NeuGc(1)Sulf(1): Hex(3) HexNAc(3) NeuGc Sulf.
13192
13193 /// dHex(1)Hex(2)HexNAc(2)NeuGc(2): DHex Hex(2) HexNAc(2) NeuGc(2).
13195
13196 /// dHex(2)Hex(3)HexNAc(2)NeuGc(1): DHex(2) Hex(3) HexNAc(2) NeuGc ---OR--- Hex(4) HexNAc(2) dHex NeuAc.
13198
13199 /// dHex(1)Hex(3)HexA(1)HexNAc(3)Sulf(1): DHex Hex(3) HexA HexNAc(3) Sulf.
13201
13202 /// Hex(2)HexNAc(3)NeuAc(2): Hex(2) HexNAc(3) NeuAc(2).
13204
13205 /// dHex(2)Hex(2)HexNAc(3)NeuAc(1): DHex(2) Hex(2) HexNAc(3) NeuAc.
13207
13208 /// dHex(4)Hex(2)HexNAc(3): DHex(4) Hex(2) HexNAc(3).
13210
13211 /// Hex(2)HexNAc(3)NeuAc(1)NeuGc(1): Hex(2) HexNAc(3) NeuAc NeuGc.
13213
13214 /// dHex(2)Hex(2)HexNAc(3)NeuGc(1): DHex(2) Hex(2) HexNAc(3) NeuGc ---OR--- Hex(3) HexNAc(3) dHex NeuAc ---OR--- Hex(2) HexNAc(4) dHex Kdn.
13216
13217 /// dHex(3)Hex(3)HexNAc(3): DHex(3) Hex(3) HexNAc(3).
13219
13220 /// Hex(8)Phos(3): Hex(8) Phos(3).
13222
13223 /// dHex(1)Hex(2)HexNAc(2)NeuAc(2)Sulf(1): DHex Hex(2) HexNAc(2) NeuAc(2) Sulf.
13225
13226 /// Hex(2)HexNAc(3)NeuGc(2): Hex(2) HexNAc(3) NeuGc(2).
13228
13229 /// dHex(4)Hex(2)HexNAc(2)Kdn(1): DHex(4) Hex(2) HexNAc(2) Kdn.
13231
13232 /// dHex(1)Hex(2)HexNAc(4)NeuAc(1): DHex Hex(2) HexNAc(4) NeuAc.
13234
13235 /// dHex(3)Hex(2)HexNAc(4): DHex(3) Hex(2) HexNAc(4).
13237
13238 /// Hex(1)HexNAc(1)NeuGc(4): Hex HexNAc NeuGc(4).
13240
13241 /// dHex(4)Hex(1)HexNAc(3)Kdn(1): DHex(4) Hex HexNAc(3) Kdn.
13243
13244 /// Hex(4)HexNAc(4)Sulf(2): Hex(4) HexNAc(4) Sulf(2).
13246
13247 /// dHex(3)Hex(2)HexNAc(3)Kdn(1): DHex(3) Hex(2) HexNAc(3) Kdn ---OR--- Hex(3) HexNAc(2) dHex(3) NeuAc.
13249
13250 /// dHex(2)Hex(2)HexNAc(5): DHex(2) Hex(2) HexNAc(5).
13252
13253 /// dHex(2)Hex(3)HexA(1)HexNAc(3)Sulf(1): DHex(2) Hex(3) HexA HexNAc(3) Sulf.
13255
13256 /// dHex(1)Hex(4)HexA(1)HexNAc(3)Sulf(1): DHex Hex(4) HexA HexNAc(3) Sulf.
13258
13259 /// Hex(3)HexNAc(3)NeuAc(2): Hex(3) HexNAc(3) NeuAc(2).
13261
13262 /// dHex(2)Hex(3)HexNAc(3)NeuAc(1): DHex(2) Hex(3) HexNAc(3) NeuAc ---OR--- Hex(2) HexNAc(4) dHex(2) Kdn.
13264
13265 /// dHex(4)Hex(3)HexNAc(3): DHex(4) Hex(3) HexNAc(3).
13267
13268 /// Hex(9)Phos(3): Hex(9) Phos(3).
13270
13271 /// dHex(2)HexNAc(7): DHex(2) HexNAc(7).
13273
13274 /// Hex(2)HexNAc(1)NeuGc(4): Hex(2) HexNAc NeuGc(4).
13276
13277 /// Hex(3)HexNAc(3)NeuAc(2)Sulf(1): Hex(3) HexNAc(3) NeuAc(2) Sulf.
13279
13280 /// dHex(2)Hex(3)HexNAc(5): DHex(2) Hex(3) HexNAc(5).
13282
13283 /// dHex(1)Hex(2)HexNAc(2)NeuGc(3): DHex Hex(2) HexNAc(2) NeuGc(3).
13285
13286 /// dHex(2)Hex(4)HexA(1)HexNAc(3)Sulf(1): DHex(2) Hex(4) HexA HexNAc(3) Sulf.
13288
13289 /// Hex(2)HexNAc(3)NeuAc(3): Hex(2) HexNAc(3) NeuAc(3).
13291
13292 /// dHex(1)Hex(3)HexNAc(3)NeuAc(2): DHex Hex(3) HexNAc(3) NeuAc(2).
13294
13295 /// dHex(3)Hex(3)HexNAc(3)NeuAc(1): DHex(3) Hex(3) HexNAc(3) NeuAc.
13297
13298 /// Hex(2)HexNAc(3)NeuGc(3): Hex(2) HexNAc(3) NeuGc(3).
13300
13301 /// Hex(10)Phos(3): Hex(10) Phos(3).
13303
13304 /// dHex(1)Hex(2)HexNAc(4)NeuAc(2): DHex Hex(2) HexNAc(4) NeuAc(2).
13306
13307 /// Hex(1)HexNAc(1)NeuGc(5): Hex HexNAc NeuGc(5).
13309
13310 /// Hex(4)HexNAc(4)NeuAc(1)Sulf(2): Hex(4) HexNAc(4) NeuAc Sulf(2).
13312
13313 /// Hex(4)HexNAc(4)NeuGc(1)Sulf(2): Hex(4) HexNAc(4) NeuGc Sulf(2).
13315
13316 /// dHex(2)Hex(3)HexNAc(3)NeuAc(2): DHex(2) Hex(3) HexNAc(3) NeuAc(2).
13318
13319 /// Hex(4)HexNAc(4)NeuAc(1)Sulf(3): Hex(4) HexNAc(4) NeuAc Sulf(3).
13321
13322 /// dHex(2)Hex(2)HexNAc(2): DHex(2) Hex(2) HexNAc(2).
13324
13325 /// dHex(1)Hex(3)HexNAc(2): DHex Hex(3) HexNAc(2).
13327
13328 /// dHex(1)Hex(2)HexNAc(3): DHex Hex(2) HexNAc(3).
13330
13331 /// Hex(3)HexNAc(3): Hex(3) HexNAc(3).
13333
13334 /// dHex(1)Hex(3)HexNAc(2)Sulf(1): DHex Hex(3) HexNAc(2) Sulf.
13336
13337 /// dHex(2)Hex(3)HexNAc(2): DHex(2) Hex(3) HexNAc(2).
13339
13340 /// dHex(1)Hex(4)HexNAc(2): DHex Hex(4) HexNAc(2).
13342
13343 /// dHex(2)Hex(2)HexNAc(3): DHex(2) Hex(2) HexNAc(3).
13345
13346 /// dHex(1)Hex(3)HexNAc(3): DHex Hex(3) HexNAc(3).
13348
13349 /// Hex(4)HexNAc(3): Hex(4) HexNAc(3).
13351
13352 /// dHex(2)Hex(4)HexNAc(2): DHex(2) Hex(4) HexNAc(2).
13354
13355 /// dHex(2)Hex(3)HexNAc(3): DHex(2) Hex(3) HexNAc(3).
13357
13358 /// Hex(3)HexNAc(5): Hex(3) HexNAc(5).
13360
13361 /// Hex(4)HexNAc(3)NeuAc(1): Hex(4) HexNAc(3) NeuAc ---OR--- Hex(3) HexNAc(4) Kdn.
13363
13364 /// dHex(2)Hex(3)HexNAc(4): DHex(2) Hex(3) HexNAc(4).
13366
13367 /// dHex(1)Hex(3)HexNAc(5): DHex Hex(3) HexNAc(5).
13369
13370 /// Hex(3)HexNAc(6): Hex(3) HexNAc(6).
13372
13373 /// Hex(4)HexNAc(4)NeuAc(1): Hex(4) HexNAc(4) NeuAc.
13375
13376 /// dHex(2)Hex(4)HexNAc(4): DHex(2) Hex(4) HexNAc(4) ---OR--- Hex(4) HexNAc(4) dHex Pent Me.
13378
13379 /// Hex(6)HexNAc(4): Hex(6) HexNAc(4).
13381
13382 /// Hex(5)HexNAc(5): Hex(5) HexNAc(5).
13384
13385 /// dHex(1)Hex(3)HexNAc(6): DHex Hex(3) HexNAc(6).
13387
13388 /// dHex(1)Hex(4)HexNAc(4)NeuAc(1): DHex Hex(4) HexNAc(4) NeuAc ---OR--- Hex(3) HexNAc(5) dHex Kdn.
13390
13391 /// dHex(3)Hex(4)HexNAc(4): DHex(3) Hex(4) HexNAc(4).
13393
13394 /// dHex(1)Hex(3)HexNAc(5)NeuAc(1): DHex Hex(3) HexNAc(5) NeuAc.
13396
13397 /// dHex(2)Hex(4)HexNAc(5): DHex(2) Hex(4) HexNAc(5).
13399
13400 /// Hex(1)HexNAc(1)NeuAc(1)Ac(1): Ac Hex HexNAc NeuAc.
13402
13403 /// Label:13C(2)15N(2): 13C(2) 15N(2).
13405
13406 /// Xlink:DSS[155]: Ammonium-quenched monolink of DSS/BS3 crosslinker.
13408
13409 /// NQIGG: SUMOylation by Giardia lamblia.
13410 UNIMOD_NQIGG = 200001799,
13411
13412 /// Carboxyethylpyrrole: Carboxyethylpyrrole.
13414
13415 /// Fluorescein-tyramine: Fluorescein-tyramine adduct by peroxidase activity.
13417
13418 /// GEE: Transamidation of glycine ethyl ester to glutamine.
13419 UNIMOD_GEE = 200001824,
13420
13421 /// RNPXL: Simulate peptide-RNA conjugates.
13422 UNIMOD_RNPXL = 200001825,
13423
13424 /// Glu->pyro-Glu+Methyl: Pyro-Glu from E + Methylation.
13426
13427 /// Glu->pyro-Glu+Methyl:2H(2)13C(1): Pyro-Glu from E + Methylation Medium.
13429
13430 /// LRGG+methyl: LeumethylArgGlyGly.
13432
13433 /// LRGG+dimethyl: LeudimethylArgGlyGly.
13435
13436 /// Biotin-tyramide: Biotin-Phenol.
13438
13439 /// Tris: Tris adduct causes 104 Da addition at asparagine-succinimide intermediate.
13440 UNIMOD_Tris = 200001831,
13441
13442 /// IASD: Iodoacetamide derivative of stilbene (reaction product with thiol).
13443 UNIMOD_IASD = 200001832,
13444
13445 /// NP40: NP-40 synthetic polymer terminus.
13446 UNIMOD_NP40 = 200001833,
13447
13448 /// Tween20: Tween 20 synthetic polymer terminus.
13449 UNIMOD_Tween20 = 200001834,
13450
13451 /// Tween80: Tween 80 synthetic polymer terminus.
13452 UNIMOD_Tween80 = 200001835,
13453
13454 /// Triton: Triton synthetic polymer terminus.
13455 UNIMOD_Triton = 200001836,
13456
13457 /// Brij35: Brij 35 synthetic polymer terminus.
13458 UNIMOD_Brij35 = 200001837,
13459
13460 /// Brij58: Brij 58 synthetic polymer terminus.
13461 UNIMOD_Brij58 = 200001838,
13462
13463 /// betaFNA: Beta-Funaltrexamine.
13464 UNIMOD_betaFNA = 200001839,
13465
13466 /// dHex(1)Hex(7)HexNAc(4): Fucosylated biantennary + 2 alphaGal.
13468
13469 /// Biotin:Thermo-21328: EZ-Link Sulfo-NHS-SS-Biotin.
13471
13472 /// PhosphoCytidine: Cytidine monophosphate.
13474
13475 /// AzidoF: Azidophenylalanine.
13476 UNIMOD_AzidoF = 200001845,
13477
13478 /// Dimethylaminoethyl: Cys alkylation by dimethylaminoethyl halide.
13480
13481 /// Gluratylation: Glutarylation.
13483
13484 /// 2-hydroxyisobutyrylation: 2-hydroxyisobutyrylation.
13486
13487 /// MeMePhosphorothioate: S-Methyl Methyl phosphorothioate.
13489
13490 /// Cation:Fe[III]: Replacement of 3 protons by iron.
13492
13493 /// DTT: DTT adduct of cysteine.
13494 UNIMOD_DTT = 200001871,
13495
13496 /// DYn-2: Sulfenic Acid specific probe.
13497 UNIMOD_DYn_2 = 200001872,
13498
13499 /// MesitylOxide: Acetone chemical artifact.
13501
13502 /// methylol: Formaldehyde induced modifications.
13503 UNIMOD_methylol = 200001875,
13504
13505 /// Xlink:DSS[259]: Tris-quenched monolink of DSS/BS3 crosslinker.
13507
13508 /// Xlink:DSSO[176]: Water-quenched monolink of DSSO crosslinker.
13510
13511 /// Xlink:DSSO[175]: Ammonia-quenched monolink of DSSO crosslinker.
13513
13514 /// Xlink:DSSO[279]: Tris-quenched monolink of DSSO crosslinker.
13516
13517 /// Xlink:DSSO[54]: Alkene fragment of DSSO crosslinker.
13519
13520 /// Xlink:DSSO[86]: Thiol fragment of DSSO crosslinker.
13522
13523 /// Xlink:DSSO[104]: Sulfenic acid fragment of DSSO crosslinker.
13525
13526 /// Xlink:BuUrBu[111]: BuUr fragment of BuUrBu crosslinker.
13528
13529 /// Xlink:BuUrBu[85]: Bu fragment of BuUrBu crosslinker.
13531
13532 /// Xlink:BuUrBu[213]: Ammonia quenched monolink of BuUrBu crosslinker.
13534
13535 /// Xlink:BuUrBu[214]: Water quenched monolink of BuUrBu crosslinker.
13537
13538 /// Xlink:BuUrBu[317]: Tris quenched monolink of BuUrBu crosslinker.
13540
13541 /// Xlink:DSSO[158]: Intact DSSO crosslinker.
13543
13544 /// Xlink:EGS[226]: Intact EGS cross-linker.
13546
13547 /// Xlink:DSS[138]: Intact DSS/BS3 crosslinker.
13549
13550 /// Xlink:BuUrBu[196]: Intact BuUrBu crosslinker.
13552
13553 /// Xlink:DTBP[172]: Intact DTBP crosslinker.
13555
13556 /// Xlink:DST[114]: Intact DST crosslinker.
13558
13559 /// Xlink:DTSSP[174]: Intact DSP/DTSSP crosslinker.
13561
13562 /// Xlink:SMCC[219]: Intact SMCC cross-link.
13564
13565 /// Xlink:BS2G[96]: Intact BS2-G crosslinker.
13567
13568 /// Xlink:BS2G[113]: Ammonium-quenched monolink of BS2-G crosslinker.
13570
13571 /// Xlink:BS2G[114]: Water-quenched monolink of BS2-G crosslinker.
13573
13574 /// Xlink:BS2G[217]: Tris-quenched monolink of BS2-G crosslinker.
13576
13577 /// Cation:Al[III]: Replacement of 3 protons by aluminium.
13579
13580 /// Xlink:DMP[139]: Ammonia quenched monolink of DMP crosslinker.
13582
13583 /// Xlink:DMP[122]: Intact DMP crosslinker.
13585
13586 /// glyoxalAGE: Glyoxal-derived AGE.
13588
13589 /// Met->AspSA: Methionine oxidation to aspartic semialdehyde.
13591
13592 /// Decarboxylation: Decarboxylation.
13594
13595 /// Aspartylurea: Aspartylurea.
13597
13598 /// Formylasparagine: In Bachi as Formylaspargine (typo?).
13600
13601 /// Carbonyl: Aldehyde and ketone modifications.
13602 UNIMOD_Carbonyl = 200001918,
13603
13604 /// AFB1_Dialdehyde: Adduction of aflatoxin B1 Dialdehyde to lysine.
13606
13607 /// Pro->HAVA: Proline oxidation to 5-hydroxy-2-aminovaleric acid.
13608 UNIMOD_Pro__HAVA = 200001922,
13609
13610 /// Delta:H(-4)O(2): Tryptophan oxidation to beta-unsaturated-2,4-bis-tryptophandione.
13612
13613 /// Delta:H(-4)O(3): Tryptophan oxidation to hydroxy-bis-tryptophandione.
13615
13616 /// Delta:O(4): Tryptophan oxidation to dihydroxy-N-formaylkynurenine.
13618
13619 /// Delta:H(3)C(3)O(2): Methylglyoxal-derived carboxyethyllysine.
13621
13622 /// Delta:H(4)C(5)O(1): Methylglyoxal-derived argpyrimidine.
13624
13625 /// Delta:H(10)C(8)O(1): Crotonaldehyde-derived dimethyl-FDP-lysine.
13627
13628 /// Delta:H(6)C(7)O(4): Methylglyoxal-derived tetrahydropyrimidine.
13630
13631 /// Pent(2): Pent(2).
13632 UNIMOD_Pent_2_ = 200001930,
13633
13634 /// Pent(1)HexNAc(1): Pent HexNAc.
13636
13637 /// Hex(2)Sulf(1): Hex(2) O(3) S.
13639
13640 /// Hex(1)Pent(2)Me(1): Hex:1 Pent:2 Me:1.
13642
13643 /// HexNAc(2)Sulf(1): HexNAc(2) Sulf.
13645
13646 /// Hex(1)Pent(3)Me(1): Hex Pent(3) Me.
13648
13649 /// Hex(2)Pent(2): Hex(2) Pent(2).
13651
13652 /// Hex(2)Pent(2)Me(1): Hex(2) Pent(2) Me.
13654
13655 /// Hex(4)HexA(1): Hex(4) HexA.
13657
13658 /// Hex(2)HexNAc(1)Pent(1)HexA(1): Hex(2) HexNAc Pent HexA.
13660
13661 /// Hex(3)HexNAc(1)HexA(1): Hex(3) HexNAc HexA.
13663
13664 /// Hex(1)HexNAc(2)dHex(2)Sulf(1): Hex HexNAc(2) dHex(2) Sulf.
13666
13667 /// HexA(2)HexNAc(3): HexA(2) HexNAc(3).
13669
13670 /// dHex(1)Hex(4)HexA(1): DHex Hex(4) HexA.
13672
13673 /// Hex(5)HexA(1): Hex(5) HexA.
13675
13676 /// Hex(4)HexA(1)HexNAc(1): Hex(4) HexA HexNAc.
13678
13679 /// dHex(3)Hex(3)HexNAc(1): DHex(3) Hex(3) HexNAc.
13681
13682 /// Hex(6)HexNAc(1): Hex(6) HexNAc.
13684
13685 /// Hex(1)HexNAc(4)dHex(1)Sulf(1): Sulf dHex Hex HexNAc(4).
13687
13688 /// dHex(1)Hex(2)HexNAc(1)NeuAc(2): DHex Hex(2) HexNAc NeuAc(2).
13690
13691 /// dHex(3)Hex(3)HexNAc(2): DHex(3) Hex(3) HexNAc(2).
13693
13694 /// dHex(2)Hex(1)HexNAc(4)Sulf(1): DHex(2) Hex HexNAc(4) Sulf.
13696
13697 /// dHex(1)Hex(2)HexNAc(4)Sulf(2): DHex Hex(2) HexNAc(4) Sulf(2).
13699
13700 /// Hex(9): Hex(9).
13701 UNIMOD_Hex_9_ = 200001953,
13702
13703 /// dHex(2)Hex(3)HexNAc(3)Sulf(1): Sulf dHex(2) Hex(3) HexNAc(3).
13705
13706 /// dHex(2)Hex(5)HexNAc(2)Me(1): Me dHex(2) Hex(5) HexNAc(2).
13708
13709 /// dHex(2)Hex(2)HexNAc(4)Sulf(2): Sulf(2) dHex(2) Hex(2) HexNAc(4).
13711
13712 /// Hex(9)HexNAc(1): Hex(9) HexNAc.
13714
13715 /// dHex(3)Hex(2)HexNAc(4)Sulf(2): DHex(3) Hex(2) HexNAc(4) Sulf(2).
13717
13718 /// Hex(4)HexNAc(4)NeuGc(1): Hex(4) HexNAc(4) NeuGc.
13720
13721 /// dHex(4)Hex(3)HexNAc(2)NeuAc(1): DHex(4) Hex(3) HexNAc(2) NeuAc(1).
13723
13724 /// Hex(3)HexNAc(5)NeuAc(1): Hex(3) HexNAc(5) NeuAc(1).
13726
13727 /// Hex(10)HexNAc(1): Hex(10) HexNAc(1).
13729
13730 /// dHex(1)Hex(8)HexNAc(2): DHex Hex(8) HexNAc(2).
13732
13733 /// Hex(3)HexNAc(4)NeuAc(2): Hex(3) HexNAc(4) NeuAc(2).
13735
13736 /// dHex(2)Hex(3)HexNAc(4)NeuAc(1): DHex(2) Hex(3) HexNAc(4) NeuAc.
13738
13739 /// dHex(2)Hex(2)HexNAc(6)Sulf(1): DHex(2) Hex(2) HexNAc(6) Sulf.
13741
13742 /// Hex(5)HexNAc(4)NeuAc(1)Ac(1): Hex(5) HexNAc(4) NeuAc Ac.
13744
13745 /// Hex(3)HexNAc(3)NeuAc(3): Hex(3) HexNAc(3) NeuAc(3).
13747
13748 /// Hex(5)HexNAc(4)NeuAc(1)Ac(2): Hex(5) HexNAc(4) NeuAc Ac(2).
13750
13751 /// Unknown:162: Unidentified modification of 162.1258 found in open search.
13753
13754 /// Unknown:177: Unidentified modification of 176.7462 found in open search.
13756
13757 /// Unknown:210: Unidentified modification of 210.1616 found in open search.
13759
13760 /// Unknown:216: Unidentified modification of 216.1002 found in open search.
13762
13763 /// Unknown:234: Unidentified modification of 234.0742 found in open search.
13765
13766 /// Unknown:248: Unidentified modification of 248.1986 found in open search.
13768
13769 /// Unknown:250: Unidentified modification of 249.981 found in open search.
13771
13772 /// Unknown:302: Unidentified modification of 301.9864 found in open search.
13774
13775 /// Unknown:306: Unidentified modification of 306.0952 found in open search.
13777
13778 /// Unknown:420: Unidentified modification of 420.0506 found in open search.
13780
13781 /// Diethylphosphothione: O-diethylphosphothione.
13783
13784 /// Dimethylphosphothione: O-dimethylphosphothione.
13786
13787 /// monomethylphosphothione: O-methylphosphothione.
13789
13790 /// CIGG: Ubiquitin D (FAT10) leaving after chymotrypsin digestion Cys-Ile-Gly-Gly.
13791 UNIMOD_CIGG = 200001990,
13792
13793 /// GNLLFLACYCIGG: Ubiquitin D (FAT10) leaving after trypsin digestion Gly-Asn-Leu-Leu-Phe-Leu-Ala-Cys-Tyr-Cys-Ile-Gly-Gly.
13795
13796 /// serotonylation: 5-glutamyl serotonin.
13798
13799 /// TMPP-Ac:13C(9): Heavy tris(2,4,6-trimethoxyphenyl)phosphonium acetic acid N-hydroxysuccinimide ester derivative.
13801
13802 /// unit: A unit of measurement is a standardized quantity of a physical quality.
13803 UO_unit = 300000000,
13804
13805 /// length unit: A unit which is a standard measure of the distance between two points.
13806 UO_length_unit = 300000001,
13807
13808 /// mass unit: A unit which is a standard measure of the amount of matter/energy of a physical object.
13809 UO_mass_unit = 300000002,
13810
13811 /// time unit: A unit which is a standard measure of the dimension in which events occur in sequence.
13812 UO_time_unit = 300000003,
13813
13814 /// electric current unit: A unit which is a standard measure of the flow of electric charge.
13816
13817 /// temperature unit: A unit which is a standard measure of the average kinetic energy of the particles in a sample of matter.
13819
13820 /// substance unit: A unit which is a standardised quantity of an element or compound with uniform composition.
13822
13823 /// luminous intensity unit: A unit which is a standard measure of the wavelength-weighted power emitted by a light source in a particular direction.
13825
13826 /// meter: A length unit which is equal to the length of the path traveled by light in vacuum during a time interval of 1/299 792 458 of a second.
13827 UO_meter = 300000008,
13828
13829 /// kilogram: A mass unit which is equal to the mass of the International Prototype Kilogram kept by the BIPM at Svres, France.
13830 UO_kilogram = 300000009,
13831
13832 /// second: A time unit which is equal to the duration of 9 192 631 770 periods of the radiation corresponding to the transition between the two hyperfine levels of the ground state of the caesium 133 atom.
13833 UO_second = 300000010,
13834
13835 /// ampere: An electric current unit which is equal to the constant current which, if maintained in two straight parallel conductors of infinite length, of negligible circular cross-section, and placed 1 m apart in vacuum, would produce between these conductors a force equal to 2 x 10^[-7] newton per meter of length.
13836 UO_ampere = 300000011,
13837
13838 /// kelvin: A thermodynamic temperature unit which is equal to the fraction 1/273.16 of the thermodynamic temperature of the triple point of water.
13839 UO_kelvin = 300000012,
13840
13841 /// mole: A substance unit which is equal to the amount of substance of a molecular system which contains as many elementary entities as there are atoms in 0.012 kilogram of carbon 12.
13842 UO_mole = 300000013,
13843
13844 /// candela: A luminous intensity unit which equal to the luminous intensity, in a given direction, of a source that emits monochromatic radiation of frequency 540 x 1012 hertz and that has a radiant intensity in that direction of 1/683 watt per steradian.
13845 UO_candela = 300000014,
13846
13847 /// centimeter: A length unit which is equal to one hundredth of a meter or 10^[-2] m.
13848 UO_centimeter = 300000015,
13849
13850 /// millimeter: A length unit which is equal to one thousandth of a meter or 10^[-3] m.
13851 UO_millimeter = 300000016,
13852
13853 /// micrometer: A length unit which is equal to one millionth of a meter or 10^[-6] m.
13854 UO_micrometer = 300000017,
13855
13856 /// nanometer: A length unit which is equal to one thousandth of one millionth of a meter or 10^[-9] m.
13857 UO_nanometer = 300000018,
13858
13859 /// angstrom: A length unit which is equal to 10 [-10] m.
13860 UO_angstrom = 300000019,
13861
13862 /// picometer: A length unit which is equal to 10^[-12] m.
13863 UO_picometer = 300000020,
13864
13865 /// gram: A mass unit which is equal to one thousandth of a kilogram or 10^[-3] kg.
13866 UO_gram = 300000021,
13867
13868 /// milligram: A mass unit which is equal to one thousandth of a gram or 10^[-3] g.
13869 UO_milligram = 300000022,
13870
13871 /// microgram: A mass unit which is equal to one millionth of a gram or 10^[-6] g.
13872 UO_microgram = 300000023,
13873
13874 /// nanogram: A mass unit which is equal to one thousandth of one millionth of a gram or 10^[-9] g.
13875 UO_nanogram = 300000024,
13876
13877 /// picogram: A mass unit which is equal to 10^[-12] g.
13878 UO_picogram = 300000025,
13879
13880 /// femtogram: A mass unit which is equal to 10^[-15] g.
13881 UO_femtogram = 300000026,
13882
13883 /// degree Celsius: A temperature unit which is equal to one kelvin degree. However, they have their zeros at different points. The centigrade scale has its zero at 273.15 K.
13885
13886 /// millisecond: A time unit which is equal to one thousandth of a second or 10^[-3] s.
13887 UO_millisecond = 300000028,
13888
13889 /// microsecond: A time unit which is equal to one millionth of a second or 10^[-6] s.
13890 UO_microsecond = 300000029,
13891
13892 /// picosecond: A time unit which is equal to 10^[-12] s.
13893 UO_picosecond = 300000030,
13894
13895 /// minute: A time unit which is equal to 60 seconds.
13896 UO_minute = 300000031,
13897
13898 /// hour: A time unit which is equal to 3600 seconds or 60 minutes.
13899 UO_hour = 300000032,
13900
13901 /// day: A time unit which is equal to 24 hours.
13902 UO_day = 300000033,
13903
13904 /// week: A time unit which is equal to 7 days.
13905 UO_week = 300000034,
13906
13907 /// month: A time unit which is approximately equal to the length of time of one of cycle of the moon's phases which in science is taken to be equal to 30 days.
13908 UO_month = 300000035,
13909
13910 /// year: A time unit which is equal to 12 months which in science is taken to be equal to 365.25 days.
13911 UO_year = 300000036,
13912
13913 /// milliampere: An electric current unit current which is equal to one thousandth of an ampere or 10^[-3] A.
13914 UO_milliampere = 300000037,
13915
13916 /// microampere: An electric current unit current which is equal to one millionth of an ampere or 10^[-6] A.
13917 UO_microampere = 300000038,
13918
13919 /// micromole: A substance unit equal to a millionth of a mol or 10^[-6] mol.
13920 UO_micromole = 300000039,
13921
13922 /// millimole: A substance unit equal to a thousandth of a mol or 10^[-3] mol.
13923 UO_millimole = 300000040,
13924
13925 /// nanomole: A substance unit equal to one thousandth of one millionth of a mole or 10^[-9] mol.
13926 UO_nanomole = 300000041,
13927
13928 /// picomole: A substance unit equal to 10^[-12] mol.
13929 UO_picomole = 300000042,
13930
13931 /// femtomole: A substance unit equal to 10^[-15] mol.
13932 UO_femtomole = 300000043,
13933
13934 /// attomole: A substance unit equal to 10^[-18] mol.
13935 UO_attomole = 300000044,
13936
13937 /// base unit: A unit which is one of a particular measure to which all measures of that type can be related.
13938 UO_base_unit = 300000045,
13939
13940 /// prefix:
13941 UO_prefix = 300000046,
13942
13943 /// area unit: A unit which is a standard measure of the amount of a 2-dimensional flat surface.
13944 UO_area_unit = 300000047,
13945
13946 /// acceleration unit: A unit which is a standard measure of the rate of change of velocity in either speed or direction.
13948
13949 /// angular velocity unit: A unit which is a standard measure of the rate of angular movement about an axis; the angle rotated in a given time.
13951
13952 /// angular acceleration unit: A unit which is a standard measure of the rate of change of angular velocity.
13954
13955 /// concentration unit: A unit which represents a standard measurement of how much of a given substance there is mixed with another substance.
13957
13958 /// mass density unit: A density unit which is a standard measure of the mass of a substance in a given volume.
13960
13961 /// luminance unit: A unit which is a standard measure of the luminous intensity impinging on a given area.
13963
13964 /// area density unit: A density unit which is a standard measure of the mass exerting an influence on a given area.
13966
13967 /// molar mass unit: A unit which is a standard measure of the mass of a homogeneous substance containing 6.02 x 1023 atoms or molecules.
13969
13970 /// molar volume unit: A unit which is a standard measure of the volume of a homogeneous substance containing 6.02 x 1023 atoms or molecules.
13972
13973 /// momentum unit: A unit which is a standard measure of the quantity of motion measured by the product of mass and velocity.
13974 UO_momentum_unit = 300000057,
13975
13976 /// rotational frequency unit: A unit which is a standard measure of the number of rotations in a given time.
13978
13979 /// specific volume unit: A unit which is a standard measure of the volume of a given mass of substance (the reciprocal of density).
13981
13982 /// speed/velocity unit: A unit which is a standard measure of the rate of movement. Speed is measured in the same physical units of measurement as velocity, but does not contain the element of direction that velocity has. Speed is thus the magnitude component of velocity.
13984
13985 /// unit of molarity: A concentration unit which is a standard measure of the number of moles of a given substance per liter of solution.
13987
13988 /// molar: A unit of concentration which expresses a concentration of 1 mole of solute per liter of solution (mol/L).
13989 UO_molar = 300000062,
13990
13991 /// millimolar: A unit of molarity which is equal to one thousandth of a molar or 10^[-3] M.
13992 UO_millimolar = 300000063,
13993
13994 /// micromolar: A unit of molarity which is equal to one millionth of a molar or 10^[-6] M.
13995 UO_micromolar = 300000064,
13996
13997 /// nanomolar: A unit of molarity which is equal to one thousandth of one millionth of a molar or 10^[-9] M.
13998 UO_nanomolar = 300000065,
13999
14000 /// picomolar: A unit of molarity which is equal to 10^[-12] M.
14001 UO_picomolar = 300000066,
14002
14003 /// unit of molality: A concentration unit which is a standard measure of the number of moles of a given substance per kilogram of solvent.
14005
14006 /// molal: A unit of concentration which expresses a concentration of a solution of 1 mole per kilogram of solvent (mol/kg).
14007 UO_molal = 300000068,
14008
14009 /// millimolal: A molality unit which is equal to one thousandth of a molal or 10^[-3] m.
14010 UO_millimolal = 300000069,
14011
14012 /// micromolal: A molality unit which is equal to one millionth of a molal or 10^[-6] m.
14013 UO_micromolal = 300000070,
14014
14015 /// nanomolal: A molality unit which is equal to one thousandth of one millionth of a molal or 10^[-9] m.
14016 UO_nanomolal = 300000071,
14017
14018 /// picomolal: A molality unit which is equal to 10^[-12] m.
14019 UO_picomolal = 300000072,
14020
14021 /// femtomolar: A unit of molarity which is equal to 10^[-15] M.
14022 UO_femtomolar = 300000073,
14023
14024 /// unit of normality: A unit of concentration which highlights the chemical nature of salts.
14026
14027 /// normal: A unit of concentration which is one gram equivalent of a solute per liter of solution. A gram equivalent weight or equivalent is a measure of the reactive capacity of a given molecule.
14028 UO_normal = 300000075,
14029
14030 /// mole fraction: A concentration unit which denotes the number of moles of solute as a proportion of the total number of moles in a solution.
14031 UO_mole_fraction = 300000076,
14032
14033 /// meter per second per second: An acceleration unit which is equal to the acceleration an object changing its velocity by 1meter/s over a time period that equals one second.
14035
14036 /// radian per second per second: An angular unit acceleration which is equal to the angular acceleration of an object changing its angular velocity by 1rad/s over a time period that equals one second.
14038
14039 /// radian per second: An angular unit velocity which is equal to about 9.54930 rpm (revolutions per minute).
14041
14042 /// square meter: An area unit which is equal to an area enclosed by a square with sides each 1 meter long.
14043 UO_square_meter = 300000080,
14044
14045 /// square centimeter: An area unit which is equal to one ten thousandth of a square meter or 10^[-4] m^[2].
14047
14048 /// square millimeter: An area unit which is equal to one millionth of a square meter or 10^[-6] m^[2].
14050
14051 /// kilogram per cubic meter: A mass unit density which is equal to mass of an object in kilograms divided by the volume in cubic meters.
14053
14054 /// gram per cubic centimeter: A mass unit density which is equal to mass of an object in grams divided by the volume in cubic centimeters.
14056
14057 /// candela per square meter: A luminance unit which is equal to a luminous intensity of one candela radiating from a surface whose area is one square meter.
14059
14060 /// kilogram per square meter: An area density unit which is equal to the mass of an object in kilograms divided by the surface area in meters squared.
14062
14063 /// kilogram per mole: A molar mass unit which is equal to one kilogram of mass of one mole of chemical element or chemical compound.
14065
14066 /// gram per mole: A molar mass unit which is equal to one gram of mass of one mole of chemical element or chemical compound.
14067 UO_gram_per_mole = 300000088,
14068
14069 /// cubic meter per mole: A molar volume unit which is equal to 1 cubic meter occupied by one mole of a substance in the form of a solid, liquid, or gas.
14071
14072 /// cubic centimeter per mole: A molar volume unit which is equal to 1 cubic centimeter occupied by one mole of a substance in the form of a solid, liquid, or gas.
14074
14075 /// kilogram meter per second: A momentum unit which is equal to the momentum of a one kilogram mass object with a speed of one meter per second.
14077
14078 /// turns per second: A rotational frequency unit which is equal to the number complete turn in a period of time that equals to 1 second.
14080
14081 /// cubic meter per kilogram: A specific volume unit which is equal to one cubic meter volume occupied by one kilogram of a particular substance.
14083
14084 /// meter per second: A speed/velocity unit which is equal to the speed of an object traveling 1 meter distance in one second.
14086
14087 /// volume unit: A unit which is a standard measure of the amount of space occupied by any substance, whether solid, liquid, or gas.
14088 UO_volume_unit = 300000095,
14089
14090 /// cubic meter: A volume unit which is equal to the volume of a cube with edges one meter in length. One cubic meter equals to 1000 liters.
14091 UO_cubic_meter = 300000096,
14092
14093 /// cubic centimeter: A volume unit which is equal to one millionth of a cubic meter or 10^[-9] m^[3], or to 1 ml.
14095
14096 /// milliliter: A volume unit which is equal to one thousandth of a liter or 10^[-3] L, or to 1 cubic centimeter.
14097 UO_milliliter = 300000098,
14098
14099 /// liter: A volume unit which is equal to one thousandth of a cubic meter or 10^[-3] m^[3], or to 1 decimeter.
14100 UO_liter = 300000099,
14101
14102 /// cubic decimeter: A volume unit which is equal to one thousand of a cubic meter or 10^[-3] m^[3], or to 1 L.
14104
14105 /// microliter: A volume unit which is equal to one millionth of a liter or 10^[-6] L.
14106 UO_microliter = 300000101,
14107
14108 /// nanoliter: A volume unit which is equal to one thousandth of one millionth of a liter or 10^[-9] L.
14109 UO_nanoliter = 300000102,
14110
14111 /// picoliter: A volume unit which is equal to 10^[-12] L.
14112 UO_picoliter = 300000103,
14113
14114 /// femtoliter: A volume unit which is equal to 10^[-15] L.
14115 UO_femtoliter = 300000104,
14116
14117 /// frequency unit: A unit which is a standard measure of the number of repetitive actions in a particular time.
14119
14120 /// hertz: A frequency unit which is equal to 1 complete cycle of a recurring phenomenon in 1 second.
14121 UO_hertz = 300000106,
14122
14123 /// force unit: A unit which is a standard measure of the force is applied when a mass is accelerated.
14124 UO_force_unit = 300000107,
14125
14126 /// newton: A force unit which is equal to the force required to cause an acceleration of 1m/s2 of a mass of 1 Kg in the direction of the force.
14127 UO_newton = 300000108,
14128
14129 /// pressure unit: A unit which is a standard measure of the force applied to a given area.
14130 UO_pressure_unit = 300000109,
14131
14132 /// pascal: A pressure unit which is equal to the pressure or stress on a surface caused by a force of 1 newton spread over a surface of 1 m^[2].
14133 UO_pascal = 300000110,
14134
14135 /// energy unit: A unit which is a standard measure of the work done by a certain force (gravitational, electric, magnetic, force of inertia, etc).
14136 UO_energy_unit = 300000111,
14137
14138 /// joule: An energy unit which is equal to the energy required when a force of 1 newton moves an object 1 meter in the direction of the force.
14139 UO_joule = 300000112,
14140
14141 /// power unit: A unit which is a standard measure power or the rate of doing work.
14142 UO_power_unit = 300000113,
14143
14144 /// watt: A power unit which is equal to the power used when work is done at the rate of 1 joule per second.
14145 UO_watt = 300000114,
14146
14147 /// illuminance unit: A unit which is a standard measure of the luminous flux incident on a unit area.
14149
14150 /// lux: An illuminance unit which is equal to the illuminance produced by 1 lumen evenly spread over an area 1 m^[2].
14151 UO_lux = 300000116,
14152
14153 /// luminous flux unit: A unit which is a standard measure of the flow of radiant energy.
14155
14156 /// lumen: A luminous flux unit which is equal to the luminous flux emitted into 1 steradian by a point source of 1 candela.
14157 UO_lumen = 300000118,
14158
14159 /// catalytic activity unit: A unit which is a standard measure of the amount of the action of a catalyst.
14161
14162 /// katal: A catalytic unit activity which is equal to the activity of a catalyst in moles per second, such as the amount of an enzyme needed to transform one mole of substrate per second.
14163 UO_katal = 300000120,
14164
14165 /// angle unit: A unit which is a standard measure of the figure or space formed by the junction of two lines or planes.
14166 UO_angle_unit = 300000121,
14167
14168 /// plane angle unit: A unit which is a standard measure of the angle formed by two straight lines in the same plane.
14170
14171 /// radian: A plane angle unit which is equal to the angle subtended at the center of a circle by an arc equal in length to the radius of the circle, approximately 57 degrees 17 minutes and 44.6 seconds.
14172 UO_radian = 300000123,
14173
14174 /// solid angle unit: A unit which is a standard measure of the angle formed by three or more planes intersecting at a common point.
14176
14177 /// steradian: A solid angle unit which is equal to the solid angle subtended at the center of a sphere by an area on the surface of the sphere that is equal to the radius squared.
14178 UO_steradian = 300000125,
14179
14180 /// radiation unit: A unit which is a standard measure of the amount of radiation emitted by a given radiation source as well as the amount of radiation absorbed or deposited in a specific material by a radiation source.
14182
14183 /// activity (of a radionuclide) unit: A unit which is a standard measure of the transformation (disintegration) rate of a radioactive substance.
14185
14186 /// absorbed dose unit: A unit which is a standard measure of the energy imparted by ionizing radiation to unit mass of matter such as tissue.
14188
14189 /// dose equivalent unit: A unit which is a standard measure of the expression of dose in terms of its biological effect.
14191
14192 /// exposure unit: A unit which is a standard measure of the quantity that expresses the ability of radiation to ionize air and thereby create electric charges which can be collected and measured.
14193 UO_exposure_unit = 300000131,
14194
14195 /// becquerel: An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioactive material in which one nucleus decays per second or there is one atom disintegration per second (dps).
14196 UO_becquerel = 300000132,
14197
14198 /// curie: An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioactive material in which there are 3.7 x 10^[10] atom disintegration per second (dps).
14199 UO_curie = 300000133,
14200
14201 /// gray: An absorbed dose unit which is equal to the absorption of one joule of radiation energy by one kilogram of matter.
14202 UO_gray = 300000134,
14203
14204 /// rad: An absorbed dose unit which is equal to 0.01 gray (Gy).
14205 UO_rad = 300000135,
14206
14207 /// roentgen: An exposure unit which is equal to the amount of radiation required to liberate positive and negative charges of one electrostatic unit of charge in 1 cm^[3] of air at standard temperature and pressure (STP). This corresponds to the generation of approximately 2.0810^[9] ion pairs.
14208 UO_roentgen = 300000136,
14209
14210 /// sievert: A dose equivalent unit which is equal to the absorption of one joule of radiation energy by one kilogram of matter.
14211 UO_sievert = 300000137,
14212
14213 /// millisievert: A dose equivalent unit which is equal to one thousandth of a sievert or 10^[-3] Sv.
14214 UO_millisievert = 300000138,
14215
14216 /// microsievert: A dose equivalent unit which is equal to one millionth of a sievert or 10^[-6] Sv.
14217 UO_microsievert = 300000139,
14218
14219 /// Roentgen equivalent man: A dose equivalent unit which when multiplied by hundred is equal to one sievert or 1 Sv. 1 Sv is equal to 100 rem.
14221
14222 /// microgray: An absorbed dose unit which is equal to one millionth of a gray or 10^[-6] Gy.
14223 UO_microgray = 300000141,
14224
14225 /// milligray: An absorbed dose unit which is equal to one thousandth of a gray or 10^[-3] Gy.
14226 UO_milligray = 300000142,
14227
14228 /// nanogray: An absorbed dose unit which is equal to one thousandth of a millionth of a gray or 10^[-9] Gy.
14229 UO_nanogray = 300000143,
14230
14231 /// nanosievert: A dose equivalent unit which is equal to one thousandth of a millionth of a sievert or 10^[-9] Sv.
14232 UO_nanosievert = 300000144,
14233
14234 /// millicurie: An activity (of a radionuclide) unit which is equal to one thousandth of a curie or 10^[-3] Ci.
14235 UO_millicurie = 300000145,
14236
14237 /// microcurie: An activity (of a radionuclide) unit which is equal to one millionth of a curie or 10^[-6] Ci.
14238 UO_microcurie = 300000146,
14239
14240 /// disintegrations per minute: An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioactive material in which one nucleus decays per minute or there is one atom disintegration per minute.
14242
14243 /// counts per minute: An activity (of a radionuclide) unit which is equal to the number of light emissions produced by ionizing radiation in one minute.
14245
14246 /// nanosecond: A time unit which is equal to one thousandth of one millionth of a second or 10^[-9] s.
14247 UO_nanosecond = 300000150,
14248
14249 /// century: A time unit which is equal to 100 years.
14250 UO_century = 300000151,
14251
14252 /// half life: A time unit which represents the period over which the activity or concentration of a specified chemical or element falls to half its original activity or concentration.
14253 UO_half_life = 300000152,
14254
14255 /// foot candle: An illuminance unit which is equal to the illuminance produced by 1 lumen evenly spread over an area 1 foot^[2]. One footcandle is equal to 10.76 lux.
14256 UO_foot_candle = 300000153,
14257
14258 /// irradiance unit: A unit which is a standard measure of the power of electromagnetic radiation at a surface, per unit area.
14260
14261 /// watt per square meter: An irradiance unit which is equal to 1 watt of radiant power incident per one square meter surface area.
14263
14264 /// einstein per square meter per second: An irradiance unit which is equal to one einstein per square meter per second. One einstein is one mole of photons, regardless of their frequency. Therefore, the number of photons in an einstein is Avogadro's number.
14266
14267 /// light unit: A unit which is a standard measure of the intensity of light.
14268 UO_light_unit = 300000157,
14269
14270 /// watt per steradian per square meter: A radiance unit which is equal to one watt of radiant power incident per steradian solid angle per one square meter projected area of the source, as viewed from the given direction.
14272
14273 /// radiant intensity unit: A unit which is a standard measure of the intensity of electromagnetic radiation.
14275
14276 /// microeinstein per square meter per second: An irradiance unit which is equal to one microeinstein per square meter per second or 10^[-6] microeinstein/sm^[2].
14278
14279 /// radiance unit: A unit which is a standard measure of the power of electromagnetic radiation through space or through a material medium in the form of electromagnetic waves.
14280 UO_radiance_unit = 300000161,
14281
14282 /// watt per steradian: A radiant intensity unit which is equal to one kilogram meter squared per second cubed per steradian.
14284
14285 /// mass percentage: A dimensionless concentration unit which denotes the mass of a substance in a mixture as a percentage of the mass of the entire mixture.
14287
14288 /// mass volume percentage: A dimensionless concentration unit which denotes the mass of the substance in a mixture as a percentage of the volume of the entire mixture.
14290
14291 /// volume percentage: A dimensionless concentration unit which denotes the volume of the solute in mL per 100 mL of the resulting solution.
14293
14294 /// parts per notation unit: A dimensionless concentration notation which describes the amount of one substance in another. It is the ratio of the amount of the substance of interest to the amount of that substance plus the amount of the substance.
14296
14297 /// parts per hundred: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 100 regardless of the units of measure as long as they are the same.
14299
14300 /// parts per thousand: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1000 regardless of the units of measure as long as they are the same.
14302
14303 /// parts per million: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1,000,000 regardless of the units of measure used as long as they are the same or 1 part in 10^[6].
14305
14306 /// parts per billion: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1,000,000,000 regardless of the units of measure as long as they are the same or 1 part in 10^[9].
14308
14309 /// parts per trillion: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1,000,000,000 regardless of the units of measure used as long as they are the same or 1 part in 10^[12].
14311
14312 /// parts per quadrillion: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1,000,000,000,000 regardless of the units of measure used as long as they are the same or 1 part in 10^[15].
14314
14315 /// gram per milliliter: A mass unit density which is equal to mass of an object in grams divided by the volume in milliliter.
14317
14318 /// kilogram per liter: A mass unit density which is equal to mass of an object in kilograms divided by the volume in liters.
14320
14321 /// gram per liter: A mass unit density which is equal to mass of an object in grams divided by the volume in liters.
14323
14324 /// milligram per milliliter: A mass unit density which is equal to mass of an object in milligrams divided by the volume in milliliters.
14326
14327 /// unit per volume unit: A concentration unit which is a standard measure of the number of units, as an agreed arbitrary amount, of a given substance per a specific volume of solution.
14329
14330 /// unit per milliliter: A unit per milliliter unit which is equal to one unit of an agreed arbitrary amount per one milliliter.
14332
14333 /// unit per liter: A unit per milliliter unit which is equal to one unit of an agreed arbitrary amount per one liter.
14335
14336 /// mass per unit volume: A concentration unit which is a standard measure of the mass of a substance in a given volume (density).
14338
14339 /// enzyme unit: A catalytic unit activity which is equal to the amount of the enzyme that catalyzes the conversion of 1 micro mole of substrate per minute.
14340 UO_enzyme_unit = 300000181,
14341
14342 /// density unit: A unit which is a standard measure of the influence exerted by some mass.
14343 UO_density_unit = 300000182,
14344
14345 /// linear density unit: A density unit which is a standard measure of the mass exerting an influence on a one-dimensional object.
14347
14348 /// kilogram per meter: An area density unit which is equal to the mass of an object in kilograms divided by one meter.
14350
14351 /// degree: A plane angle unit which is equal to 1/360 of a full rotation or 1.7453310^[-2] rad.
14352 UO_degree = 300000185,
14353
14354 /// dimensionless unit: A unit which is a standard measure of physical quantity consisting of only a numerical number without any units.
14356
14357 /// percent: A dimensionless ratio unit which denotes numbers as fractions of 100.
14358 UO_percent = 300000187,
14359
14360 /// pi: A dimensionless unit which denoted an irrational real number, approximately equal to 3.14159 which is the ratio of a circle's circumference to its diameter in Euclidean geometry.
14361 UO_pi = 300000188,
14362
14363 /// count unit: A dimensionless unit which denotes a simple count of things.
14364 UO_count_unit = 300000189,
14365
14366 /// ratio: A dimensionless unit which denotes an amount or magnitude of one quantity relative to another.
14368
14369 /// fraction: A dimensionless ratio unit which relates the part (the numerator) to the whole (the denominator).
14370 UO_fraction = 300000191,
14371
14372 /// molecule count: A dimensionless count unit which denotes the number of molecules.
14374
14375 /// purity percentage: A dimensionless percent unit which denotes the homogeneity of a biomaterial.
14377
14378 /// confluence percentage: A dimensionless percent unit which denotes the density of an attached or monolayer culture (e.g., cell culture).
14380
14381 /// degree Fahrenheit: A temperature unit which is equal to 5/9ths of a kelvin. Negative 40 degrees Fahrenheit is equal to negative 40 degrees Celsius.
14383
14384 /// pH: A dimensionless concentration notation which denotes the acidity of a solution in terms of activity of hydrogen ions (H+).
14385 UO_pH = 300000196,
14386
14387 /// liter per kilogram: A specific volume unit which is equal to one liter volume occupied by one kilogram of a particular substance.
14389
14390 /// milliliter per kilogram: A specific volume unit which is equal to a thousandth of a liter per kilogram or 10^[-3] l/kg.
14392
14393 /// microliter per kilogram: A specific volume unit which is equal to one millionth of a liter per kilogram or 10^[-6] l/kg.
14395
14396 /// cell concentration unit: A concentration unit which denotes the average cell number in a given volume.
14398
14399 /// cells per milliliter: A unit of cell concentration which is equal to one cell in a volume of 1 milliliter.
14401
14402 /// catalytic (activity) concentration unit: A concentration unit which is a standard measure of the amount of the action of a catalyst in a given volume.
14404
14405 /// katal per cubic meter: A catalytic (activity) concentration unit which is equal to 1 katal activity of a catalyst in a given volume of one cubic meter.
14407
14408 /// katal per liter: A catalytic (activity) concentration unit which is equal to 1 katal activity of a catalyst in a given volume of one thousandth of a cubic meter.
14410
14411 /// volume per unit volume: A dimensionless concentration unit which denotes the given volume of the solute in the total volume of the resulting solution.
14413
14414 /// milliliter per cubic meter: A volume per unit volume unit which is equal to one millionth of a liter of solute in one cubic meter of solution.
14416
14417 /// milliliter per liter: A volume per unit volume unit which is equal to one millionth of a liter of solute in one liter of solution.
14419
14420 /// gram per deciliter: A mass density unit which is equal to mass of an object in grams divided by the volume in deciliters.
14422
14423 /// deciliter: A volume unit which is equal to one tenth of a liter or 10^[-1] L.
14424 UO_deciliter = 300000209,
14425
14426 /// colony forming unit: A dimensionless count unit which a measure of viable bacterial numbers.
14428
14429 /// plaque forming unit: A dimensionless count unit which a measure of plague forming units in a given volume.
14431
14432 /// colony forming unit per volume: A concentration unit which a measure of viable bacterial numbers in a given volume.
14434
14435 /// colony forming unit per milliliter: A colony forming unit which a measure of viable bacterial numbers in one milliliter.
14437
14438 /// plaque forming unit per volume: A concentration unit which a measure of plague forming units in a given volume.
14440
14441 /// plaque forming unit per milliliter: A concentration unit which a measure of plague forming units in one milliliter.
14443
14444 /// disintegrations per second: An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioactive material in which one nucleus decays per second or there is one atom disintegration per second.
14446
14447 /// electric potential difference unit: A unit which is a standard measure of the work done per unit charge as a charge is moved between two points in an electric field.
14449
14450 /// volt: An electric potential difference unit which is equal to the work per unit charge. One volt is the potential difference required to move one coulomb of charge between two points in a circuit while using one joule of energy.
14451 UO_volt = 300000218,
14452
14453 /// electric charge: A unit which is a standard measure of the quantity of unbalanced electricity in a body (either positive or negative) and construed as an excess or deficiency of electrons.
14455
14456 /// coulomb: An electrical charge unit which is equal to the amount of charge transferred by a current of 1 ampere in 1 second.
14457 UO_coulomb = 300000220,
14458
14459 /// dalton: An independently to the base SI units defined mass unit which is equal to one twelfth of the mass of an unbound atom of the carbon-12 nuclide, at rest and in its ground state.
14460 UO_dalton = 300000221,
14461
14462 /// kilodalton: A mass unit which is equal to one thousand daltons.
14463 UO_kilodalton = 300000222,
14464
14465 /// watt-hour: An energy unit which is equal to the amount of electrical energy equivalent to a one-watt load drawing power for one hour.
14466 UO_watt_hour = 300000223,
14467
14468 /// kilowatt-hour: An energy unit which is equal to 1,000 watt-hours.
14469 UO_kilowatt_hour = 300000224,
14470
14471 /// magnetic flux unit: A unit which is a standard measure of quantity of magnetism, taking account of the strength and the extent of a magnetic field.
14473
14474 /// weber: A magnetic flux unit which is equal to the amount of flux that when linked with a single turn of wire for an interval of one second will induce an electromotive force of one volt.
14475 UO_weber = 300000226,
14476
14477 /// magnetic flux density unit: A unit which is a standard measure of the strength of a magnetic field.
14479
14480 /// tesla: A magnetic flux density unit which is equal to one weber per square meter.
14481 UO_tesla = 300000228,
14482
14483 /// volt-hour: A magnetic flux unit which is equal to 3600 Wb.
14484 UO_volt_hour = 300000229,
14485
14486 /// kilovolt-hour: A magnetic flux unit which is equal to one thousand volt-hours.
14487 UO_kilovolt_hour = 300000230,
14488
14489 /// information unit: A unit which is a standard measure of the amount of information.
14491
14492 /// bit: An information unit which refers to a digit in the binary numeral system, which consists of base 2 digits (ie there are only 2 possible values: 0 or 1).
14493 UO_bit = 300000232,
14494
14495 /// byte: An information unit which is equal to 8 bits.
14496 UO_byte = 300000233,
14497
14498 /// kilobyte: An information unit which is equal to 1000 bytes.
14499 UO_kilobyte = 300000234,
14500
14501 /// megabyte: An information unit which is equal to 1000 kB.
14502 UO_megabyte = 300000235,
14503
14504 /// image resolution unit: An information unit which is a standard measure of the detail an image holds.
14506
14507 /// chroma sampling unit: An image resolution unit which is a standard measure of the amount of spatial detail in an image.
14509
14510 /// dynamic range unit: An image resolution unit which is a standard measure of the amount of contrast available in a pixel.
14512
14513 /// spatial resolution unit: An image resolution unit which is a standard measure of the way luminance and chrominance may be sampled at different levels.
14515
14516 /// dots per inch: A spatial resolution unit which is a standard measure of the printing resolution, in particular the number of individual dots of ink a printer or toner can produce within a linear one-inch space.
14517 UO_dots_per_inch = 300000240,
14518
14519 /// micron pixel: A spatial resolution unit which is equal to a pixel size of one micrometer.
14520 UO_micron_pixel = 300000241,
14521
14522 /// pixels per inch: A spatial resolution unit which is a standard measure of the resolution of a computer display, related to the size of the display in inches and the total number of pixels in the horizontal and vertical directions.
14524
14525 /// pixels per millimeter: A spatial resolution unit which is a standard measure of the number of pixels in one millimeter length or width of a digital image divided by the physical length or width of a printed image.
14527
14528 /// base pair: A count unit which contains one nucleotide.
14529 UO_base_pair = 300000244,
14530
14531 /// kibibyte: An information unit which is equal to 1024 B.
14532 UO_kibibyte = 300000245,
14533
14534 /// mebibyte: An information unit which is equal to 1024 KiB.
14535 UO_mebibyte = 300000246,
14536
14537 /// millivolt: An electric potential difference unit which is equal to one thousandth of a volt or 10^[-3] V.
14538 UO_millivolt = 300000247,
14539
14540 /// kilovolt: An electric potential difference unit which is equal to one thousand volts or 10^[3] V.
14541 UO_kilovolt = 300000248,
14542
14543 /// microvolt: An electric potential difference unit which is equal to one millionth of a volt or 10^[-6] V.
14544 UO_microvolt = 300000249,
14545
14546 /// nanovolt: An electric potential difference unit which is equal to one billionth of a volt or 10^[-12] V.
14547 UO_nanovolt = 300000250,
14548
14549 /// picovolt: An electric potential difference unit which is equal to one trillionth of a volt or 10^[-12] V.
14550 UO_picovolt = 300000251,
14551
14552 /// megavolt: An electric potential difference unit which is equal to one million volts or 10^[6] V.
14553 UO_megavolt = 300000252,
14554
14555 /// surface tension unit: A unit which is a standard measure of the ability of a liguid to attraction of molecules at its surface as a result of unbalanced molecular cohesive forces.
14557
14558 /// newton per meter: A surface tension unit which is equal to one newton per meter.
14560
14561 /// dyne per cm: A surface tension unit which is equal to one dyne per centimeter.
14562 UO_dyne_per_cm = 300000255,
14563
14564 /// viscosity unit: A unit which is a standard measure of the internal resistance of fluids to flow.
14566
14567 /// pascal second: A viscosity unit which is equal to one pascale per second.
14568 UO_pascal_second = 300000257,
14569
14570 /// poise: A viscosity unit which is equal to one dyne second per square centimeter.
14571 UO_poise = 300000258,
14572
14573 /// decibel: A ratio unit which is an indicator of sound power per unit area.
14574 UO_decibel = 300000259,
14575
14576 /// effective dose unit: A unit which is a standard measure of the estimate of the stochastic effect that a non-uniform radiation dose has on a human.
14578
14579 /// conduction unit: A unit which represents a standard measurement of the transmission of an entity through a medium.
14581
14582 /// electrical conduction unit: A unit which represents a standard measurement of the movement of electrically charged particles through a transmission medium (electrical conductor).
14584
14585 /// heat conduction unit: A unit which represents a standard measurement of the spontaneous transfer of thermal energy through matter, from a region of higher temperature to a region of lower temperature.
14587
14588 /// siemens: An electrical conduction unit which is equal to A/V.
14589 UO_siemens = 300000264,
14590
14591 /// watt per meter kelvin: An heat conduction unit which is equal to one watt divided by meter kelvin.
14593
14594 /// electronvolt: A non-SI unit of energy (eV) defined as the energy acquired by a single unbound electron when it passes through an electrostatic potential difference of one volt. An electronvolt is equal to 1.602 176 53(14) x 10^-19 J.
14595 UO_electronvolt = 300000266,
14596
14597 /// electric field strength unit: The electric field strength is a unit which is a measure of the potential difference between two points some distance apart.
14599
14600 /// volt per meter: The volt per meter is a unit of electric field strength equal to the a potential difference of 1 volt existing between two points that are 1 meter apart.
14602
14603 /// absorbance unit: A dimensionless logarithmic unit assigned to a measure of absorbance of light through a partially absorbing substance, defined as -log10(I/I_0) where I = transmitted light and I_0 = incident light.
14605
14606 /// volumetric flow rate unit: A unit which is a standard measure of the volume of fluid which passes through a given surface per unit time .
14608
14609 /// microliters per minute: A volumetric flow rate unit which is equal to one microliter volume through a given surface in one minute.
14611
14612 /// millimetres of mercury: A unit of pressure equal to the amount of fluid pressure one millimeter deep in mercury at zero degrees centigrade on Earth.
14614
14615 /// milligram per liter: A mass unit density which is equal to mass of an object in milligrams divided by the volume in liters.
14617
14618 /// microgram per milliliter: A mass unit density which is equal to mass of an object in micrograms divided by the volume in millliters.
14620
14621 /// nanogram per milliliter: A mass unit density which is equal to mass of an object in nanograms divided by the volume in milliliters.
14623
14624 /// amount per container: A concentration unit which is a standard measure of the amount of a substance in a given container.
14626
14627 /// ug/disk: A unit which is equal to one microgram per disk, where a disk is some physical surface/container upon which the substance is deposited.
14628 UO_ug_disk = 300000277,
14629
14630 /// nmole/disk: A unit which is equal to one nanomole per disk, where a disk is some physical surface/container upon which the substance is deposited.
14631 UO_nmole_disk = 300000278,
14632
14633 /// milliunits per milliliter: A unit per milliliter unit which is equal to one thousandth of a unit of an agreed arbitrary amount per one milliliter.
14635
14636 /// rate unit: A unit which represents a standard measurement occurrence of a process per unit time.
14637 UO_rate_unit = 300000280,
14638
14639 /// count per nanomolar second: A rate unit which is equal to one over one nanomolar second.
14641
14642 /// count per molar second: A rate unit which is equal to one over one molar second.
14644
14645 /// kilogram per hectare: An area density unit which is equal to the mass of an object in kilograms divided by the surface area in hectares.
14647
14648 /// count per nanomolar: A rate unit which is equal to one over one nanomolar.
14650
14651 /// count per molar: A rate unit which is equal to one over one molar.
14653
14654 /// yotta: A prefix in the metric system denoting a factor of ten to the power of 24.
14655 UO_yotta = 300000286,
14656
14657 /// hecto: A prefix in the metric system denoting a factor of one hundred.
14658 UO_hecto = 300000287,
14659
14660 /// zetta: A prefix in the metric system denoting a factor of ten to the power of 21.
14661 UO_zetta = 300000288,
14662
14663 /// exa: A prefix in the metric system denoting a factor of ten to the power of 18.
14664 UO_exa = 300000289,
14665
14666 /// peta: A prefix in the metric system denoting a factor of ten to the power of 15.
14667 UO_peta = 300000290,
14668
14669 /// tera: A prefix in the metric system denoting a factor of ten to the power of 12.
14670 UO_tera = 300000291,
14671
14672 /// giga: A prefix in the metric system denoting a factor of ten to the power of 9.
14673 UO_giga = 300000292,
14674
14675 /// mega: A prefix in the metric system denoting a factor of million.
14676 UO_mega = 300000293,
14677
14678 /// kilo: A prefix in the metric system denoting a factor of one thousand.
14679 UO_kilo = 300000294,
14680
14681 /// deca: A prefix in the metric system denoting a factor of ten.
14682 UO_deca = 300000295,
14683
14684 /// deci: A prefix in the metric system denoting a factor of one tenth.
14685 UO_deci = 300000296,
14686
14687 /// milli: A prefix in the metric system denoting a factor of one thousand.
14689
14690 /// centi: A prefix in the metric system denoting a factor of one hundred.
14691 UO_centi = 300000298,
14692
14693 /// micro: A prefix in the metric system denoting a factor of 10 to the power of -6.
14694 UO_micro = 300000299,
14695
14696 /// nano: A prefix in the metric system denoting a factor of 10 to the power of -9.
14697 UO_nano = 300000300,
14698
14699 /// microgram per liter: A mass unit density which is equal to mass of an object in micrograms divided by the volume in liters.
14701
14702 /// pico: A prefix in the metric system denoting a factor of 10 to the power of -12.
14703 UO_pico = 300000302,
14704
14705 /// femto: A prefix in the metric system denoting a factor of 10 to the power of -15.
14706 UO_femto = 300000303,
14707
14708 /// atto: A prefix in the metric system denoting a factor of 10 to the power of -18.
14709 UO_atto = 300000304,
14710
14711 /// zepto: A prefix in the metric system denoting a factor of 10 to the power of -21.
14712 UO_zepto = 300000305,
14713
14714 /// yocto: A prefix in the metric system denoting a factor of 10 to the power of -24.
14715 UO_yocto = 300000306,
14716
14717 /// dose unit: A concentration unit which is a standard measure of the amount of a toxic or pharmaceutical substance administered to a recipient subject, expressed in terms of the size of the subject.
14718 UO_dose_unit = 300000307,
14719
14720 /// milligram per kilogram: A dose unit which is equal to 1 milligram of a toxic or pharmaceutical substance per kilogram body weight of the recipient subject.
14722
14723 /// milligram per square meter: A dose unit which is equal to 1 milligram of a toxic or pharmaceutical substance per square meter of surface area of the recipient subject.
14725
14726 /// dosage unit: A concentration unit which is a standard measure of the amount of a toxic or pharmaceutical substance administered over time to a recipient subject, expressed in terms of the size of the subject.
14727 UO_dosage_unit = 300000310,
14728
14729 /// milligram per kilogram per day: A dosage unit which is equal to 1 milligram per day of a toxic or pharmaceutical substance per kilogram body weight of the recipient subject.
14731
14732 /// relative light unit: A derived unit which is a measure of relative light intensity, as typically measured by a luminometer, spectrophotometer, or fluorimeter in biological research applications.
14734
14735 /// relative luminescence unit: A relative light unit which is a measure of relative luminescence intensity.
14737
14738 /// relative fluorescence unit: A relative light unit which is a measure of relative fluorescence intensity.
14740
14741 /// turbidity unit: A unit used to indicate the clarity of water or other solutions or suspensions, as measured by the ability of the solution or suspension to scatter light of a defined wavelength range.
14743
14744 /// cells per microliter: A unit of cell concentration which is equal to one cell in a volume of 1 microliter.
14746
14747 /// cells per well: A unit of cell concentration which is equal to 1 cell in a well or discrete container of arbitrary volume.
14749
14750 /// formazin nephelometric unit: 1000 formazin turbidity units (FNU) on the empirical formazin turbidity scale represents reflectance of insol. reaction products of 0.0725 g hydrazine sulfate with 0.7250 g hexamethylenetetramine diluted to 1 L.
14752
14753 /// radioactivity concentration: A concentration unit which is a standard measure of the amount of radioactivity in a given volume.
14755
14756 /// curie per liter: A unit of radioactivity concentration which is equal to one curie in a volume of 1 liter.
14758
14759 /// microcurie per milliliter: A unit of radioactivity concentration which is equal to one micro curie in a volume of 1 liter.
14761
14762 /// fold dilution: A unit that is the ratio of concentration of two solutions of interest, typically with one solution derived from the other by the addition of solvent.
14763 UO_fold_dilution = 300000322,
14764
14765 /// ton per hectare: An area density unit which is equal to the mass of an object in tons divided by the surface area in hectares.
14767
14768 /// square angstrom: An area unit which is equal to an area enclosed by a square with sides each 1 angstrom long.
14770
14771 /// megaHertz: A frequency unit which is equal to one million hertz or 10^[6] V.
14772 UO_megaHertz = 300000325,
14773
14774 /// centiMorgan: A unit used to express distances on a genetic map. In genetic mapping, distances between markers are determined by measuring the rate of meoitic recombination between them, which increases proportionately with the distance separating them. A cM is defined as the length of an interval in which there is a 1% probability of recombination. On the average, 1 cM is roughly equivalent to 1 megabase (Mb) of DNA, although this can vary widely due to hot and cold spots of recombination.
14775 UO_centiMorgan = 300000326,
14776
14777 /// centiRay: A unit of genetic map distance defined corresponding to an interval in which there is a 1% probability of X-irradiation induced breakage. To be completely specified, the unit must be qualified by the radiation in dosage in rads (e.g. cR8000), because this determines the actual breakage probability.
14778 UO_centiRay = 300000327,
14779
14780 /// kilobasepair: A unit equal to one thousand base pairs.
14781 UO_kilobasepair = 300000328,
14782
14783 /// megabasepair: A unit equal to one million base pairs
14784 UO_megabasepair = 300000329,
14785
14786 /// gigabasepair: A unit equal to one billion base pairs.
14787 UO_gigabasepair = 300000330,
14788
14789 /// gigabyte: An information unit which is equal to 1000000000 bytes.
14790 UO_gigabyte = 300000331,
14791
14792 /// terabyte: An information unit which is equal to 1000 gigabytes.
14793 UO_terabyte = 300000332,
14794
14795 /// square micrometer: An area unit which is equal to an area enclosed by a square with sides each 1 micrometer long.
14797
14798 /// millisiemens: An electrical conduction unit which is equal to one thousandth of a siemen or 10^[-3] siemens.
14799 UO_millisiemens = 300010002,
14800
14801 /// micromole per litre: A specific concentration unit which is equal to 1 micromole in a given volume of one thousandth of a cubic meter.
14803
14804 /// micromole per kilogram: A specific concentration unit which is equal to 1 micromole of a given substance per kilogram of solvent.
14806
14807 /// millimeters per day: A speed/velocity unit which is equal to the speed of an object traveling 1 millimeter distance in one day.
14809
14810 /// ratio: A dimensionless ratio unit which, given a pair of quantities a and b, for which b is a multiple of a, denotes b by giving the multiplier (coefficient) c for a to result in b.
14812
14813 /// volt-second per square centimeter: An electrical mobility unit which is equal to one volt second per square centimeter.
14815
14816 /// kilometer per hour: A speed/velocity unit which is equal to the speed of an object traveling 1 kilometer distance in one hour.
14818
14819 /// milli: A mass unit which is equal to 1/12 the mass of 12C
14821
14822 /// hectare: An area unit which is equal to an area of 10,000 square meters. Equivalent to 2.471 acres.
14823 UO_hectare = 300010010,
14824
14825 /// inch: A length unit which is equal to 0.0254 metres.
14826 UO_inch = 300010011,
14827
14828 /// thou: A length unit which is equal to 0.0254 millimetres.
14829 UO_thou = 300010012,
14830
14831 /// foot: A length unit which is equal to 0.3048 metres, or 12 inches.
14832 UO_foot = 300010013,
14833
14834 /// yard: A length unit which is equal to 0.9144 metres, or 3 feet.
14835 UO_yard = 300010014,
14836
14837 /// chain: A length unit which is equal to 20.1168 metres, 66 feet, or 22 yards.
14838 UO_chain = 300010015,
14839
14840 /// furlong: A length unit which is equal to 20,116.8 metres, 660 feet, or 10 chains.
14841 UO_furlong = 300010016,
14842
14843 /// mile: A length unit which is equal to 1,609.344 metres, or 8 furlongs.
14844 UO_mile = 300010017,
14845
14846 /// league: A length unit which is equal to 3 miles, or 4,828.032 metres
14847 UO_league = 300010018,
14848
14849 /// maritime length unit: A maritime length unit is one used primarily at sea.
14851
14852 /// fathom: A maritime length unit which is equal to 6.08 feet, or 1.853184 metres
14853 UO_fathom = 300010020,
14854
14855 /// cable: A maritime length unit which is equal to 608 feet, 100 fathoms, or 185.3184 metres
14856 UO_cable = 300010021,
14857
14858 /// nautical mile: A maritime length unit which is equal to 6,080 feet, 10 cables, or 1,853.184 metres
14859 UO_nautical_mile = 300010022,
14860
14861 /// perch: An area unit which is equal to an area of 25.292,852,64 square meters, or 1 square rod.
14862 UO_perch = 300010023,
14863
14864 /// rood: An area unit which is equivalent to 1 furlong x 1 rod. This is equal to an area of 1,011.714,1056 square meters, or 40 square rods.
14865 UO_rood = 300010024,
14866
14867 /// acre: An area unit which is equivalent to 1 furlong x 1 chain. This is equal to an area of 4,046.856,4224 square meters, or 43,500 square feet.
14868 UO_acre = 300010025,
14869
14870 /// fluid ounce: An imperial volume unit which is equivalent to 28.413,0625 millilitres.
14871 UO_fluid_ounce = 300010026,
14872
14873 /// gill: An imperial volume unit which is equivalent to 142.065,3125 millilitres.
14874 UO_gill = 300010027,
14875
14876 /// pint: An imperial volume unit which is equivalent to 568.261,25 millilitres.
14877 UO_pint = 300010028,
14878
14879 /// quart: An imperial volume unit which is equivalent to 1,136.5225 millilitres, or two pints.
14880 UO_quart = 300010029,
14881
14882 /// gallon: An imperial volume unit which is equivalent to 4,546.09 millilitres, or 8 pints.
14883 UO_gallon = 300010030,
14884
14885 /// grain: An imperial mass unit which is equivalent to 64.798,91 milligrams.
14886 UO_grain = 300010031,
14887
14888 /// drachm: An imperial mass unit which is equivalent to 1.771,845,195,3125 grams, or 1/256 of 1 pound.
14889 UO_drachm = 300010032,
14890
14891 /// ounce: An imperial mass unit which is equivalent to 28.349,523,125 grams, or 1/16 of 1 pound.
14892 UO_ounce = 300010033,
14893
14894 /// pound: An imperial mass unit which is equivalent to 453.592,37 grams.
14895 UO_pound = 300010034,
14896
14897 /// stone: An imperial mass unit which is equivalent to 6,350.293,18 grams, or 14 pounds.
14898 UO_stone = 300010035,
14899
14900 /// quarter: An imperial mass unit which is equivalent to 12.700,586,36 kilograms, or 28 pounds.
14901 UO_quarter = 300010036,
14902
14903 /// hundredweight: An imperial mass unit which is equivalent to 50.802,345,44 kilograms, 112 pounds, or 8 stone.
14904 UO_hundredweight = 300010037,
14905
14906 /// ton: An imperial mass unit which is equivalent to 1,016.046,9088 kilograms, or 2,240 pounds.
14907 UO_ton = 300010038,
14908
14909 /// slug: An imperial gravitational unit which is equivalent to a mass that accelerates by 1ft/s² when a force of one pound (lbf) is exerted on it.
14910 UO_slug = 300010039
14911}; // enum CVID
14912
14913
14914/// Information about an ontology or CV source and a short 'lookup' tag to refer to.
14916{
14917 /// the short label to be used as a reference tag with which to refer to this particular Controlled Vocabulary source description (e.g., from the cvLabel attribute, in CVParamType elements).
14918 std::string id;
14919
14920 /// the URI for the resource.
14921 std::string URI;
14922
14923 /// the usual name for the resource (e.g. The PSI-MS Controlled Vocabulary).
14924 std::string fullName;
14925
14926 /// the version of the CV from which the referred-to terms are drawn.
14927 std::string version;
14928
14929 /// returns true iff id, URI, fullName, and version are all pairwise equal
14930 bool operator==(const CV& that) const;
14931
14932 /// returns ture iff id, URI, fullName, and version are all empty
14933 bool empty() const;
14934};
14935
14936
14937/// returns a CV object for the specified namespace (prefix);
14938/// currently supported namespaces are: MS UO
14939PWIZ_API_DECL const CV& cv(const std::string& prefix);
14940
14941
14942/// structure for holding CV term info
14944{
14945 CVID cvid;
14946 std::string id;
14947 std::string name;
14948 std::string def;
14950
14951 typedef std::vector<CVID> id_list;
14954 std::multimap<std::string, CVID> otherRelations;
14955 std::vector<std::string> exactSynonyms;
14956 std::multimap<std::string, std::string> propertyValues;
14957
14958 CVTermInfo() : cvid((CVID)-1) {}
14959 const std::string& shortName() const;
14960 std::string prefix() const;
14961};
14962
14963
14964/// returns CV term info for the specified CVID
14966
14967
14968/// returns CV term info for the specified id (accession number)
14969PWIZ_API_DECL const CVTermInfo& cvTermInfo(const char* id);
14970PWIZ_API_DECL const CVTermInfo& cvTermInfo(const std::string& id);
14971
14972
14973/// returns true iff child IsA parent in the CV
14974PWIZ_API_DECL bool cvIsA(CVID child, CVID parent);
14975
14976
14977/// returns vector of all valid CVIDs
14978PWIZ_API_DECL const std::vector<CVID>& cvids();
14979
14980
14981} // namespace cv
14982} // namespace pwiz
14983
14984
14985#endif // _CV_HPP_
14986
14987
#define PWIZ_API_DECL
Definition Export.hpp:32
UNIMOD_Methylthio
Methylthio: Beta-methylthiolation.
Definition cv.hpp:9459
MS_space_charge_effect
space charge effect: The mutual repulsion of particles of like charge that limits the current in a ch...
Definition cv.hpp:1518
MS_Pepitome_MVH
Pepitome:MVH (MyriMatch:MVH): Using the multivariate hypergeometric distribution and a peak list divi...
Definition cv.hpp:5172
MS_ProteomeDiscoverer_WinCyg_source_files
ProteomeDiscoverer:WinCyg source files: Windows pepXML file names.
Definition cv.hpp:5637
UNIMOD_Dicarbamidomethyl
Dicarbamidomethyl: Double Carbamidomethylation.
Definition cv.hpp:12090
UNIMOD_CLIP_TRAQ_2
CLIP_TRAQ_2: CLIP_TRAQ_2.
Definition cv.hpp:10356
MS_PD
PD (plasma desorption): The ionization of material in a solid sample by bombarding it with ionic or n...
Definition cv.hpp:762
MS_H_PINS_retention_time_normalization_standard
H-PINS retention time normalization standard: The de facto standard providing the retention times at ...
Definition cv.hpp:3411
MS_MaxQuant_PTM_Delta_Score
MaxQuant:PTM Delta Score: The PTM Delta Score value from MaxQuant software (Difference between highes...
Definition cv.hpp:6378
UNIMOD_Ala__Gly
Ala->Gly: Ala->Gly substitution.
Definition cv.hpp:10410
MS_Percolator_features
Percolator:features: List of Percolator features that were used in processing the peptide matches....
Definition cv.hpp:5694
UNIMOD_Hex_6_HexNAc_5_
Hex(6)HexNAc(5): Hex(6) HexNAc(5).
Definition cv.hpp:12762
UNIMOD_Pro__Val
Pro->Val: Pro->Val substitution.
Definition cv.hpp:11775
PEFF_ProteoformDb
ProteoformDb: Proteoform database flag.
Definition cv.hpp:171
MS_X_Tandem
X!Tandem: X!Tandem was used to analyze the spectra.
Definition cv.hpp:4833
MS_DiART_reagent_114
DiART reagent 114: The name of the sample labelled with the DiART reagent 114.
Definition cv.hpp:8736
MS_z
z (charge state): The charge state of the ion, single or multiple and positive or negatively charged.
Definition cv.hpp:399
MS_sample_name
sample name: A reference string relevant to the sample under study.
Definition cv.hpp:267
UNIMOD_dHex_1_Hex_5_HexNAc_2_Pent_1_
dHex(1)Hex(5)HexNAc(2)Pent(1): DHex Hex(5) HexNAc(2) Pent.
Definition cv.hpp:12501
MS_CompassXport
CompassXport: Bruker stand-alone software for data conversion.
Definition cv.hpp:2820
MS_analog_digital_converter
analog-digital converter: Analog-to-digital converter (abbreviated ADC, A/D or A to D) is an electron...
Definition cv.hpp:684
MS_Tranche_file_hash
Tranche file hash: Hash assigned by the Tranche resource to an individual file.
Definition cv.hpp:6201
MS_QuantAnalysis
QuantAnalysis: Bruker software for data analysis.
Definition cv.hpp:2877
UNIMOD_dHex_2_Hex_3_HexNAc_5_
dHex(2)Hex(3)HexNAc(5): DHex(2) Hex(3) HexNAc(5).
Definition cv.hpp:13281
MS_Progenesis_peptide_count
Progenesis:peptide count: The data type peptide count produced by Progenesis LC-MS.
Definition cv.hpp:6099
MS_isotope_ratio_mass_spectrometry_OBSOLETE
isotope ratio mass spectrometry: The measurement of the relative quantity of the different isotopes o...
Definition cv.hpp:1272
UNIMOD_Nitro
Nitro: Oxidation to nitro.
Definition cv.hpp:10011
UNIMOD_Hex_6_HexNAc_4_
Hex(6)HexNAc(4): Hex(6) HexNAc(4).
Definition cv.hpp:13380
MS_error_on_peptide_area
error on peptide area: Error on peptide area.
Definition cv.hpp:3852
MS_identification_file_attribute
identification file attribute: Attribute describing an identification file.
Definition cv.hpp:6828
MS_Mascot_MaxProteinHits
Mascot:MaxProteinHits: The number of protein hits to display in the report. If 'Auto',...
Definition cv.hpp:4362
MS_sample_attribute
sample attribute: Sample properties that are associated with a value.
Definition cv.hpp:2253
MS_MassHunter_Mass_Profiler
MassHunter Mass Profiler: Software for quantitation and statistical analysis of TOF and Q-TOF LC/MS d...
Definition cv.hpp:2724
UNIMOD_Pro__Arg
Pro->Arg: Pro->Arg substitution.
Definition cv.hpp:10638
UNIMOD_Glu__Ala
Glu->Ala: Glu->Ala substitution.
Definition cv.hpp:10458
MS_SELDI
SELDI (surface enhanced laser desorption ionization): The formation of ionized species in the gas pha...
Definition cv.hpp:1368
MS_iProX_dataset_identifier
iProX dataset identifier: Dataset identifier issued by the iProX repository. A dataset can refer to e...
Definition cv.hpp:8931
UNIMOD_CarboxymethylDMAP
CarboxymethylDMAP: A fixed +1 charge tag attached to the N-terminus of peptides.
Definition cv.hpp:12204
MS_offset_voltage
offset voltage: The potential difference between two adjacent interface voltages affecting in-source ...
Definition cv.hpp:6051
MS_ProteomeDiscoverer_ZCore_Protein_Score_Cutoff
ProteomeDiscoverer:ZCore:Protein Score Cutoff: Sets a minimum protein score that each protein must ex...
Definition cv.hpp:5505
MS_NoiseFilter_OBSOLETE
NoiseFilter: Removes noise from profile spectra by using different smoothing techniques.
Definition cv.hpp:2955
UO_viscosity_unit
viscosity unit: A unit which is a standard measure of the internal resistance of fluids to flow.
Definition cv.hpp:14565
UO_count_unit
count unit: A dimensionless unit which denotes a simple count of things.
Definition cv.hpp:14364
MS_TopMG_max_shift
TopMG:max shift: Maximum value of the mass shift (in Dalton).
Definition cv.hpp:9237
MS_peptide_level_spectral_count
peptide-level spectral count: The number of MS2 spectra identified for a peptide sequence specified b...
Definition cv.hpp:8619
UNIMOD_Biotin_Thermo_21901_2H2O
Biotin:Thermo-21901+2H2O: Maleimide-Biotin + 2Water.
Definition cv.hpp:12153
MS_mzidLib_CombineSearchEngines
mzidLib:CombineSearchEngines: A tool for combining results analysed in parallel in two or three searc...
Definition cv.hpp:7185
MS_Thermo_Fisher_Scientific_instrument_model
Thermo Fisher Scientific instrument model: Thermo Fisher Scientific instrument model....
Definition cv.hpp:2049
MS_search_engine_specific_input_parameter
search engine specific input parameter: Search engine specific input parameters.
Definition cv.hpp:4308
MS_Morpheus_summed_Morpheus_score
Morpheus:summed Morpheus score: Summed Morpheus score for protein groups.
Definition cv.hpp:8448
UNIMOD_Tyr__Thr
Tyr->Thr: Tyr->Thr substitution.
Definition cv.hpp:11988
MS_SEQUEST_Full
SEQUEST:Full:
Definition cv.hpp:3792
MS_ProteomeDiscoverer_Spectrum_Exporter_Export_Format_OBSOLETE
ProteomeDiscoverer:Spectrum Exporter:Export Format: Format of the exported spectra (dta,...
Definition cv.hpp:5517
MS_preprocessing_software
preprocessing software: Preprocessing software.
Definition cv.hpp:7608
MS_AXIMA_Confidence_MALDI_TOF
AXIMA Confidence MALDI-TOF: Shimadzu Biotech AXIMA Confidence MALDI-TOF (curved field reflectron) MS.
Definition cv.hpp:2493
MS_SpectrumMill_Score
SpectrumMill:Score: Spectrum mill peptide score.
Definition cv.hpp:5115
MS_MALDI_matrix_application
MALDI matrix application: Attributes to describe the technique how the sample is prepared with the ma...
Definition cv.hpp:3192
MS_xi
xi: Search engine for cross-linked peptides.
Definition cv.hpp:8085
MS_phosphoRS_sequence_probability
phosphoRS sequence probability: Probability that the respective isoform is correct.
Definition cv.hpp:6333
MS_protein_identification_confidence_metric
protein identification confidence metric: Identification confidence metric for a protein.
Definition cv.hpp:4029
MS_percolator_PEP
percolator:PEP: Posterior error probability.
Definition cv.hpp:4884
MS_DB_source_EBI
DB source EBI: Database source EBI.
Definition cv.hpp:4182
MS_6130_Quadrupole_LC_MS
6130 Quadrupole LC/MS: The 6130 Quadrupole LC/MS system is a Agilent liquid chromatography instrument...
Definition cv.hpp:2007
MS_TopMG_use_ASF_DIAGONAL
TopMG:use ASF-DIAGONAL: Protein filtering using ASF-DIAGONAL method.
Definition cv.hpp:9270
MS_wavelength_array
wavelength array: A data array of electromagnetic radiation wavelength values.
Definition cv.hpp:2514
UNIMOD_Val__Gly
Val->Gly: Val->Gly substitution.
Definition cv.hpp:10770
UO_gram
gram: A mass unit which is equal to one thousandth of a kilogram or 10^[-3] kg.
Definition cv.hpp:13866
UNIMOD_Hex_3_HexNAc_3_NeuGc_1_
Hex(3)HexNAc(3)NeuGc(1): Hex(3) HexNAc(3) NeuGc.
Definition cv.hpp:13146
UNIMOD_Phe__CamCys
Phe->CamCys: Phe->Cys substitution and carbamidomethylation.
Definition cv.hpp:11094
MS_BP
BP (base peak): The peak in a mass spectrum that has the greatest intensity. This term may be applied...
Definition cv.hpp:1011
UO_catalytic_activity_unit
catalytic activity unit: A unit which is a standard measure of the amount of the action of a catalyst...
Definition cv.hpp:14160
MS_accelerator_mass_spectrometry_OBSOLETE
accelerator mass spectrometry: A mass spectrometry technique in which atoms extracted from a sample a...
Definition cv.hpp:1122
UNIMOD_NIC
NIC: Nicotinic Acid.
Definition cv.hpp:10824
UO_hundredweight
hundredweight: An imperial mass unit which is equivalent to 50.802,345,44 kilograms,...
Definition cv.hpp:14904
UO_femto
femto: A prefix in the metric system denoting a factor of 10 to the power of -15.
Definition cv.hpp:14706
UNIMOD_Hex_6_HexNAc_4_Me_3_Pent_1_
Hex(6)HexNAc(4)Me(3)Pent(1): Hex(6) HexNAc(4) Me(3) Pent.
Definition cv.hpp:12741
MS_genome_reference_version
genome reference version: The reference genome and versioning string as used for mapping....
Definition cv.hpp:8388
UNIMOD_Delta_Hg_1_
Delta:Hg(1): Mercury Mercaptan.
Definition cv.hpp:9879
MS_DiLeu_reagent
DiLeu reagent: Dimethyl leucine labeling reagent.
Definition cv.hpp:8754
MS_OpenXQuest_match_odds
OpenXQuest:match-odds: OpenXQuest's match-odds subscore.
Definition cv.hpp:8511
UNIMOD_Triton
Triton: Triton synthetic polymer terminus.
Definition cv.hpp:13455
MS_EM
EM (electron multiplier): A device to amplify the current of a beam or packet of charged particles or...
Definition cv.hpp:1215
MS_chromosome_strand
chromosome strand: The strand (+ or -) to which the peptide has been mapped.
Definition cv.hpp:8370
UO_count_per_nanomolar
count per nanomolar: A rate unit which is equal to one over one nanomolar.
Definition cv.hpp:14649
UNIMOD_dHex_1_Hex_3_HexNAc_1_
dHex(1)Hex(3)HexNAc(1): DHex Hex(3) HexNAc.
Definition cv.hpp:12864
UNIMOD_Ser__LacticAcid
Ser->LacticAcid: Lactic acid from N-term Ser.
Definition cv.hpp:10128
UO_radiant_intensity_unit
radiant intensity unit: A unit which is a standard measure of the intensity of electromagnetic radiat...
Definition cv.hpp:14274
UNIMOD_OxLysBiotinRed
OxLysBiotinRed: Oxidized lysine biotinylated with biotin-LC-hydrazide, reduced.
Definition cv.hpp:9576
MS_ProteomeDiscoverer_SEQUEST_Std_High_Confidence_XCorr_Charge4
ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge4: Standard high confidence XCorr paramete...
Definition cv.hpp:5535
MS_Orbitrap_Fusion_Lumos
Orbitrap Fusion Lumos: Thermo Scientific Orbitrap Fusion Lumos mass spectrometer with Tribrid archite...
Definition cv.hpp:8616
UO_mole
mole: A substance unit which is equal to the amount of substance of a molecular system which contains...
Definition cv.hpp:13842
UNIMOD_Deoxyhypusine
Deoxyhypusine: Deoxyhypusine.
Definition cv.hpp:11379
UNIMOD_DiLeu4plex117
DiLeu4plex117: Accurate mass for DiLeu 117 isobaric tag.
Definition cv.hpp:12162
UNIMOD_Asn__Asp
Asn->Asp: Asn->Asp substitution.
Definition cv.hpp:10617
UNIMOD_Pro__Met
Pro->Met: Pro->Met substitution.
Definition cv.hpp:11769
MS_activation
activation (precursor activation): Terms to describe the precursor activation.
Definition cv.hpp:1962
UNIMOD_dHex_2_Hex_1_HexNAc_2_Kdn_1_
dHex(2)Hex(1)HexNAc(2)Kdn(1): DHex(2) Hex HexNAc(2) Kdn —OR— Hex(2) HexNAc dHex(2) NeuAc.
Definition cv.hpp:12993
MS_ProteomeDiscoverer_max_number_neutral_loss_modifications
ProteomeDiscoverer:max number neutral loss modifications: Max number of same neutral losses of modifi...
Definition cv.hpp:7425
MS_greylag
greylag: Greylag identification software.
Definition cv.hpp:4782
MS_retention_time_window_upper_offset
retention time window upper offset: The extent of the retention time window in time units above the t...
Definition cv.hpp:3459
UNIMOD_Dihydroxyimidazolidine
Dihydroxyimidazolidine: Dihydroxy methylglyoxal adduct.
Definition cv.hpp:10983
UNIMOD_Xlink_BS2G_113_
Xlink:BS2G[113]: Ammonium-quenched monolink of BS2-G crosslinker.
Definition cv.hpp:13569
MS_database_EST
database EST: Expressed sequence tag nucleotide sequence database.
Definition cv.hpp:3993
MS_collision_gas_pressure
collision gas pressure: The gas pressure of the collision gas used for collisional excitation.
Definition cv.hpp:3309
UNIMOD_Trp__Cys
Trp->Cys: Trp->Cys substitution.
Definition cv.hpp:10776
MS_LCMS_IT_TOF
LCMS-IT-TOF: Shimadzu Scientific Instruments LCMS-IT-TOF MS.
Definition cv.hpp:2472
UO_kilovolt_hour
kilovolt-hour: A magnetic flux unit which is equal to one thousand volt-hours.
Definition cv.hpp:14487
MS_ProteomeDiscoverer_WinCyg_reference_database
ProteomeDiscoverer:WinCyg reference database: Windows full path for database.
Definition cv.hpp:5634
MS_Bruker_software
Bruker software: Bruker software for data acquisition and analysis.
Definition cv.hpp:2745
UNIMOD_Delta_H_6_C_3_O_1_
Delta:H(6)C(3)O(1): Reduced acrolein addition +58.
Definition cv.hpp:12138
UNIMOD_Cyano
Cyano: Cyano.
Definition cv.hpp:10218
MS_Shimadzu_instrument_model
Shimadzu instrument model: Shimadzu corporation instrument model.
Definition cv.hpp:711
UNIMOD_dHex_1_Hex_3_HexNAc_4_Pent_3_
dHex(1)Hex(3)HexNAc(4)Pent(3): DHex Hex(3) HexNAc(4) Pent(3).
Definition cv.hpp:12660
MS_Element_2
Element 2: Thermo Scientific Element 2 HR-ICP-MS.
Definition cv.hpp:2610
MS_product_ion_OBSOLETE
product ion: An ion formed as the product of a reaction involving a particular precursor ion....
Definition cv.hpp:1596
MS_scan_rate
scan rate: Rate in Th/sec for scanning analyzers.
Definition cv.hpp:306
MS_inclusive_high_intensity_threshold
inclusive high intensity threshold: Threshold at or above which some action is taken.
Definition cv.hpp:3051
MS_box_smoothing
box smoothing (moving average smoothing): Reduces intensity spikes by averaging each point with two o...
Definition cv.hpp:3036
UNIMOD_Hex_1_HexNAc_4_dHex_1_Sulf_1_
Hex(1)HexNAc(4)dHex(1)Sulf(1): Sulf dHex Hex HexNAc(4).
Definition cv.hpp:13686
UNIMOD_Lys__Asp
Lys->Asp: Lys->Asp substitution.
Definition cv.hpp:11652
UNIMOD_MeMePhosphorothioate
MeMePhosphorothioate: S-Methyl Methyl phosphorothioate.
Definition cv.hpp:13488
UNIMOD_Cys__Gly
Cys->Gly: Cys->Gly substitution.
Definition cv.hpp:10434
MS_SEQUEST_out_folder
SEQUEST out folder: Source file for this mzIdentML was a SEQUEST folder with its out files.
Definition cv.hpp:4158
MS_CRM_OBSOLETE
CRM (consecutive reaction monitoring): MSn experiment with three or more stages of m/z separation and...
Definition cv.hpp:1161
MS_TOPP_SpectraFilterThresholdMower
TOPP SpectraFilterThresholdMower: Applies a filter of peaks below a given threshold to peak spectra.
Definition cv.hpp:6882
MS_Conventional_ion_OBSOLETE
Conventional ion: A radical cation or anion in which the charge site and the unpaired electron spin a...
Definition cv.hpp:1650
MS_API_100LC
API 100LC: Applied Biosystems/MDS SCIEX API 100LC MS.
Definition cv.hpp:8211
UNIMOD_dHex_3_Hex_2_HexNAc_2_
dHex(3)Hex(2)HexNAc(2): DHex(3) Hex(2) HexNAc(2).
Definition cv.hpp:13023
MS_XCMS_into
XCMS:into: Feature intensity produced by XCMS findPeaks() from integrated peak intensity.
Definition cv.hpp:8910
MS_travelling_wave_ion_mobility_mass_spectrometer_OBSOLETE
travelling wave ion mobility mass spectrometer: An ion mobility mass spectrometry technique based on ...
Definition cv.hpp:5802
UNIMOD_Xlink_B10621
Xlink:B10621: Bis-((N-iodoacetyl)piperazinyl)sulfonerhodamine.
Definition cv.hpp:9948
UNIMOD_dHex_2_Hex_1_HexNAc_2_NeuGc_1_
dHex(2)Hex(1)HexNAc(2)NeuGc(1): DHex(2) Hex HexNAc(2) NeuGc —OR— Hex(2) HexNAc(2) dHex NeuAc —OR— Hex...
Definition cv.hpp:13020
UNIMOD_Myristoyl_Delta_H__4_
Myristoyl+Delta:H(-4): (cis,cis-delta 5, delta 8)-tetradecadienoyl.
Definition cv.hpp:9633
MS_feature_attribute
feature attribute: Attribute describing a feature.
Definition cv.hpp:5898
UO_electric_charge
electric charge: A unit which is a standard measure of the quantity of unbalanced electricity in a bo...
Definition cv.hpp:14454
UO_chroma_sampling_unit
chroma sampling unit: An image resolution unit which is a standard measure of the amount of spatial d...
Definition cv.hpp:14508
MS_8800_Triple_Quadrupole_ICP_MS
8800 Triple Quadrupole ICP-MS: The 8800 Quadrupole ICP-MS system is a Agilent inductively couple plas...
Definition cv.hpp:8835
MS_metabolic_labelling__natural_N__mainly_14N_
metabolic labelling: natural N (mainly 14N): Metabolic labelling: natural N (mainly 14N).
Definition cv.hpp:6636
UNIMOD_Hex_1_HexNAc_1_NeuAc_1_Sulf_1_
Hex(1)HexNAc(1)NeuAc(1)Sulf(1): Hex HexNAc NeuAc Sulf.
Definition cv.hpp:12807
MS_spectrum_identification_statistical_threshold
spectrum identification statistical threshold: Estimated statistical threshold used for spectrum iden...
Definition cv.hpp:8172
MS_charge_stripping_reaction_OBSOLETE
charge stripping reaction: Reaction of a positive ion with a neutral species in which the positive ch...
Definition cv.hpp:1821
MS_onium_ion_OBSOLETE
onium ion: A positively charged hypervalent ion of the nonmetallic elements. Examples are the methoni...
Definition cv.hpp:1689
UNIMOD_pupylation
pupylation: Addition of GGE.
Definition cv.hpp:12042
MS_programmer
programmer: Programmer role.
Definition cv.hpp:4224
MS_peak_intensity_OBSOLETE
peak intensity: The height or area of a peak in a mass spectrum.
Definition cv.hpp:1095
MS_median
median: Median function.
Definition cv.hpp:9072
UNIMOD_Propargylamine
Propargylamine: Propargylamine.
Definition cv.hpp:11211
MS_ProteomeDiscoverer_Mascot_Weight_of_C_Ions
ProteomeDiscoverer:Mascot:Weight of C Ions: Determines if to use C ions for spectrum matching.
Definition cv.hpp:5649
MS_decoy_DB_from_IPI_mouse_OBSOLETE
decoy DB from IPI_mouse: Decoy database from a International Protein Index database for Mus musculus.
Definition cv.hpp:4281
MS_nanoACQUITY_UPLC
nanoACQUITY UPLC: Waters LC-system nanoACQUITY UPLC.
Definition cv.hpp:5712
UNIMOD_Xlink_DMP_122_
Xlink:DMP[122]: Intact DMP crosslinker.
Definition cv.hpp:13584
MS_APEX_value
APEX value: The APEX value of protein abundance, produced from the APEX software.
Definition cv.hpp:6132
UNIMOD_Xlink_SMCC_321_
Xlink:SMCC[321]: Monolink of SMCC terminated with 3-(dimethylamino)-1-propylamine.
Definition cv.hpp:11106
UNIMOD_Hex_1_Pent_2_Me_1_
Hex(1)Pent(2)Me(1): Hex:1 Pent:2 Me:1.
Definition cv.hpp:13641
UNIMOD_Cys__Lys
Cys->Lys: Cys->Lys substitution.
Definition cv.hpp:11436
MS_ProteinExtractor_MaxNumberOfProteins
ProteinExtractor:MaxNumberOfProteins: The maximum number of proteins to consider.
Definition cv.hpp:4680
UO_microsecond
microsecond: A time unit which is equal to one millionth of a second or 10^[-6] s.
Definition cv.hpp:13890
UO_nano
nano: A prefix in the metric system denoting a factor of 10 to the power of -9.
Definition cv.hpp:14697
MS_SIM_spectrum
SIM spectrum: Spectrum obtained with the operation of a mass spectrometer in which the abundances of ...
Definition cv.hpp:2379
MS_gas_laser
gas laser: Laser which is powered by a gaseous medium.
Definition cv.hpp:3246
UO_millicurie
millicurie: An activity (of a radionuclide) unit which is equal to one thousandth of a curie or 10^[-...
Definition cv.hpp:14235
MS_glutamyl_endopeptidase
glutamyl endopeptidase: Enzyme glutamyl endopeptidase (EC 3.4.21.19).
Definition cv.hpp:6165
UNIMOD_Carboxy__Thiocarboxy
Carboxy->Thiocarboxy: Thiocarboxylic acid.
Definition cv.hpp:10170
UNIMOD_dHex_2_Hex_2_HexNAc_2_Kdn_1_
dHex(2)Hex(2)HexNAc(2)Kdn(1): DHex(2) Hex(2) HexNAc(2) Kdn.
Definition cv.hpp:13068
MS_multiple_reaction_monitoring_spectrum
multiple reaction monitoring spectrum (SRM spectrum): Spectrum obtained when data are acquired from s...
Definition cv.hpp:2397
UO_centiMorgan
centiMorgan: A unit used to express distances on a genetic map. In genetic mapping,...
Definition cv.hpp:14775
UO_nanogram
nanogram: A mass unit which is equal to one thousandth of one millionth of a gram or 10^[-9] g.
Definition cv.hpp:13875
MS_SEQUEST_sort_by_Ref
SEQUEST:sort by Ref: Sort order of SEQUEST search results given by the reference.
Definition cv.hpp:3645
UNIMOD_Ala__Val
Ala->Val: Ala->Val substitution.
Definition cv.hpp:10416
MS_MaxQuant_Phospho__STY__Probabilities
MaxQuant:Phospho (STY) Probabilities: The Phospho (STY) Probabilities from MaxQuant software.
Definition cv.hpp:6369
UNIMOD_Phenylisocyanate
Phenylisocyanate: Phenyl isocyanate.
Definition cv.hpp:10146
UO_spatial_resolution_unit
spatial resolution unit: An image resolution unit which is a standard measure of the way luminance an...
Definition cv.hpp:14514
UNIMOD_Hex_4_HexNAc_4_Sulf_2_
Hex(4)HexNAc(4)Sulf(2): Hex(4) HexNAc(4) Sulf(2).
Definition cv.hpp:13245
MS_PIA_protein_score
PIA:protein score: The score given to a protein by any protein inference.
Definition cv.hpp:7632
MS_binary_data_array
binary data array: A data array of values.
Definition cv.hpp:2145
MS_MetaMorpheus
MetaMorpheus: MetaMorpheus search engine.
Definition cv.hpp:8901
MS_Byonic_Peptide_LogProb
Byonic:Peptide LogProb: The log p-value of the PSM. This is the log of the probability that the PSM w...
Definition cv.hpp:7245
MS_mzMLb_format
mzMLb format: mzMLb file format, mzML encapsulated within HDF5.
Definition cv.hpp:8937
MS_TRIZAIC_UPLC_nanoTile
TRIZAIC UPLC nanoTile: Waters LC-system TRIZAIC UPLC nanoTile.
Definition cv.hpp:5721
MS_D_Score_threshold
D-Score threshold: Threshold for D-score PTM site location score.
Definition cv.hpp:8124
UNIMOD_Phe__His
Phe->His: Phe->His substitution.
Definition cv.hpp:11538
UNIMOD_Ala__Asn
Ala->Asn: Ala->Asn substitution.
Definition cv.hpp:11406
MS_quantitation_analysis_summary
quantitation analysis summary: The overall workflow of this quantitation report.
Definition cv.hpp:5913
UNIMOD_DiART6plex117
DiART6plex117: Accurate mass for DiART6plex 117.
Definition cv.hpp:12297
MS_DE
DE (delayed extraction): The application of the accelerating voltage pulse after a time delay in deso...
Definition cv.hpp:1173
MS_PTM_localization_distinct_peptide_level_statistic
PTM localization distinct peptide-level statistic: Statistic to convey the confidence of the localiza...
Definition cv.hpp:8100
UO_angstrom
angstrom: A length unit which is equal to 10 [-10] m.
Definition cv.hpp:13860
UNIMOD_dHex_1_Hex_3_HexNAc_2_Pent_1_
dHex(1)Hex(3)HexNAc(2)Pent(1): DHex Hex(3) HexNAc(2) Pent.
Definition cv.hpp:12447
UNIMOD_Delta_H_3_C_3_O_2_
Delta:H(3)C(3)O(2): Methylglyoxal-derived carboxyethyllysine.
Definition cv.hpp:13620
MS_reservoir
reservoir: A sample inlet method involving a reservoir.
Definition cv.hpp:480
MS_no_combination
no combination: Use this term if only one scan was recorded or there is no information about scans av...
Definition cv.hpp:3072
MS_PEAKS_proteinScore
PEAKS:proteinScore: The PEAKS protein '-10lgP Score'.
Definition cv.hpp:6276
MS_ABI_WIFF_format
ABI WIFF format: Applied Biosystems WIFF file format.
Definition cv.hpp:2295
MS_Phenyx_Turbo_Series
Phenyx:Turbo:Series: The list of ion series considered in the turbo mode of Phenyx.
Definition cv.hpp:4554
UO_nanomolar
nanomolar: A unit of molarity which is equal to one thousandth of one millionth of a molar or 10^[-9]...
Definition cv.hpp:13998
UNIMOD_Label_13C_2_15N_2_
Label:13C(2)15N(2): 13C(2) 15N(2).
Definition cv.hpp:13404
MS_ions_series_considered
ions series considered: The ion series that were used during the calculation of the count (e....
Definition cv.hpp:3825
UNIMOD_DimethylpyrroleAdduct
DimethylpyrroleAdduct: 2,5-dimethypyrrole.
Definition cv.hpp:9936
MS_MRM_OBSOLETE
MRM (multiple reaction monitoring): This term is not recommended. See Selected Reaction Monitoring.
Definition cv.hpp:615
MS_ACQUITY_UPLC_Systems_with_2D_Technology
ACQUITY UPLC Systems with 2D Technology: Waters LC-system ACQUITY UPLC Systems with 2D Technology.
Definition cv.hpp:5709
MS_hydrogen_deuterium_exchange_OBSOLETE
hydrogen/deuterium exchange: Exchange of hydrogen atoms with deuterium atoms in a molecule or pre-for...
Definition cv.hpp:1848
UNIMOD_Label_15N_1_
Label:15N(1): 15N(1).
Definition cv.hpp:11268
MS_mass_limit_OBSOLETE
mass limit: The m/z value above which ions cannot be detected in a mass spectrometer.
Definition cv.hpp:1497
UNIMOD_sulfo_amino
sulfo+amino: Aminotyrosine with sulfation.
Definition cv.hpp:11277
MS_SpectraST_delta
SpectraST:delta: SpectraST normalised difference between dot product of top hit and runner-up.
Definition cv.hpp:4659
UNIMOD_Asn__Lys
Asn->Lys: Asn->Lys substitution.
Definition cv.hpp:10608
MS_scan_polarity
scan polarity: Relative orientation of the electromagnetic field during the selection and detection o...
Definition cv.hpp:1992
MS_group_PSMs_by_sequence
group PSMs by sequence: Group PSMs by distinct peptide sequence ignoring modifications.
Definition cv.hpp:7938
MS_peptide_sequence_level_probability
peptide sequence-level probability: Probability that the reported distinct peptide sequence (irrespec...
Definition cv.hpp:7536
UNIMOD_Xle__Glu
Xle->Glu: Leu/Ile->Glu substitution.
Definition cv.hpp:11637
MS_instrument_serial_number
instrument serial number: Serial Number of the instrument.
Definition cv.hpp:2193
MS_electromagnetic_radiation_spectrum
electromagnetic radiation spectrum: A plot of the relative intensity of electromagnetic radiation as ...
Definition cv.hpp:3105
MS_Trypsin
Trypsin: Enzyme trypsin.
Definition cv.hpp:4179
MS_transmission_quadrupole_mass_spectrometer_OBSOLETE
transmission quadrupole mass spectrometer: A mass spectrometer that consists of four parallel rods wh...
Definition cv.hpp:1470
UNIMOD_Cys__SecNEM_2H_5_
Cys->SecNEM:2H(5): D5 N-ethylmaleimide on selenocysteines.
Definition cv.hpp:11361
MS_Phenyx_Auto
Phenyx:Auto: The value of the automatic peptide acceptance filter in Phenyx.
Definition cv.hpp:4587
MS_Phenyx_AC_Score
Phenyx:AC Score: The minimal protein score required for a protein database entry to be displayed in t...
Definition cv.hpp:4566
MS_DiLeu_reagent_115
DiLeu reagent 115: The name of the sample labelled with the DiLeu reagent 115.
Definition cv.hpp:8757
MS_ProteinExtractor
ProteinExtractor: An algorithm for protein determination/assembly integrated into Bruker's ProteinSca...
Definition cv.hpp:4866
UNIMOD_dHex_1_Hex_6_HexNAc_3_Sulf_1_
dHex(1)Hex(6)HexNAc(3)Sulf(1): DHex Hex(6) HexNAc(3) Sulf.
Definition cv.hpp:12639
MS_proteoform_level_statistical_threshold
proteoform-level statistical threshold: Estimated statistical threshold at proteoform-level.
Definition cv.hpp:9150
UNIMOD_iTRAQ4plex114
iTRAQ4plex114: Accurate mass for 114.
Definition cv.hpp:10374
MS_multiphoton_ionization
multiphoton ionization: Photoionization of an atom or molecule in which in two or more photons are ab...
Definition cv.hpp:1077
MS_TLF
TLF (time lag focusing): Energy focusing in a time-of-flight mass spectrometer that is accomplished b...
Definition cv.hpp:1416
UNIMOD_HN3_mustard
HN3_mustard: Modification by hydroxylated tris-(2-chloroethyl)amine (HN-3).
Definition cv.hpp:12279
MS_AXIMA_Performance_MALDI_TOF_TOF
AXIMA Performance MALDI-TOF/TOF: Shimadzu Biotech AXIMA Performance MALDI-TOF/TOF MS.
Definition cv.hpp:2490
UO_unit_of_molarity
unit of molarity: A concentration unit which is a standard measure of the number of moles of a given ...
Definition cv.hpp:13986
UNIMOD_dHex_1_Hex_2_HexNAc_4_NeuAc_2_
dHex(1)Hex(2)HexNAc(4)NeuAc(2): DHex Hex(2) HexNAc(4) NeuAc(2).
Definition cv.hpp:13305
UNIMOD_Amidated
Amidated: Amidation.
Definition cv.hpp:9375
UNIMOD_ICPL_2H_4_
ICPL:2H(4): Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, medium form.
Definition cv.hpp:10815
MS_ultraflex
ultraflex: Bruker Daltonics' ultraflex: MALDI TOF.
Definition cv.hpp:969
MS_SEQUEST_sort_by_Sf
SEQUEST:sort by Sf: Sort order of SEQUEST search results given by the SEQUEST result 'Sf'.
Definition cv.hpp:3690
MS_Gaussian_smoothing
Gaussian smoothing: Reduces intensity spikes by convolving the data with a one-dimensional Gaussian f...
Definition cv.hpp:3024
MS_MaxQuant_PEP
MaxQuant:PEP: The data type PEP (posterior error probability) produced by MaxQuant.
Definition cv.hpp:6117
UNIMOD_Thr__Ala
Thr->Ala: Thr->Ala substitution.
Definition cv.hpp:10731
MS_Proteios
Proteios: Database application and analysis platform for proteomics.
Definition cv.hpp:2460
MS_PEAKS_inChorusPeptideScore
PEAKS:inChorusPeptideScore: The PEAKS inChorus peptide score.
Definition cv.hpp:7794
MS_Trypsin_P
Trypsin/P: Cleavage agent Trypsin/P.
Definition cv.hpp:4350
UO_unit
unit: A unit of measurement is a standardized quantity of a physical quality.
Definition cv.hpp:13803
UNIMOD_Hex_3_HexNAc_6_Sulf_2_
Hex(3)HexNAc(6)Sulf(2): Hex(3) HexNAc(6) Sulf(2).
Definition cv.hpp:12675
MS_surface_induced_dissociation
surface-induced dissociation: Fragmentation that results from the collision of an ion with a surface.
Definition cv.hpp:771
UO_day
day: A time unit which is equal to 24 hours.
Definition cv.hpp:13902
MS_postacceleration_detector
postacceleration detector: A detector in which the charged particles are accelerated to a high veloci...
Definition cv.hpp:1626
MS_peptide_sharing_details
peptide sharing details: Accessions Containing Sequence - Accessions for each protein containing this...
Definition cv.hpp:3840
MS_scan_direction
scan direction: Direction in terms of m/z of the scan for scanning analyzers (low to high,...
Definition cv.hpp:315
MS_Phenyx_MinPepLength
Phenyx:MinPepLength: The minimal number of residues for a peptide to be considered for a valid identi...
Definition cv.hpp:4557
MS_axial_ejection_linear_ion_trap
axial ejection linear ion trap: A linear ion trap mass spectrometer where ions are ejected along the ...
Definition cv.hpp:531
UNIMOD_Label_13C_6_15N_4__Methyl
Label:13C(6)15N(4)+Methyl: Monomethylated Arg13C(6) 15N(4).
Definition cv.hpp:11292
MS_MS_OBSOLETE
MS (mass spectrometry): The branch of science that deals with all aspects of mass spectrometers and t...
Definition cv.hpp:1308
MS_selected_reaction_monitoring_spectrum
selected reaction monitoring spectrum (SRM spectrum): Spectrum obtained when data are acquired from s...
Definition cv.hpp:2400
MS_CLINPROT_micro
CLINPROT micro: Bruker CLINPROT micro software.
Definition cv.hpp:2796
UNIMOD_His__Xle
His->Xle: His->Leu/Ile substitution.
Definition cv.hpp:10527
MS_Other_type_file_URI
Other type file URI: URI of one file labeled as 'Other', associated to one PX submission.
Definition cv.hpp:8976
UNIMOD_phenylsulfonylethyl
phenylsulfonylethyl: Reaction with phenyl vinyl sulfone.
Definition cv.hpp:12261
UNIMOD_Hep
Hep: Heptose.
Definition cv.hpp:10290
UNIMOD_Hex_1_HexNAc_3_NeuAc_2_
Hex(1)HexNAc(3)NeuAc(2): Hex HexNAc(3) NeuAc(2).
Definition cv.hpp:13119
MS_protein_accession
protein accession: Accession number for a specific protein in a database.
Definition cv.hpp:3357
MS_selected_ion_detection_OBSOLETE
selected ion detection: Please see Single Ion Monitoring.
Definition cv.hpp:588
UNIMOD_Hex_4_HexNAc_4_NeuGc_1_Sulf_2_
Hex(4)HexNAc(4)NeuGc(1)Sulf(2): Hex(4) HexNAc(4) NeuGc Sulf(2).
Definition cv.hpp:13314
MS_top_hat_baseline_reduction
top hat baseline reduction: Top-hat morphological filter based on the basic morphological operations ...
Definition cv.hpp:6411
MS_intensity_array
intensity array: A data array of intensity values.
Definition cv.hpp:2151
MS_ANOVA_test
ANOVA-test: Perform an ANOVA-test (more than two groups). Specify in string value,...
Definition cv.hpp:6663
UNIMOD_His__Asp
His->Asp: His->Asp substitution.
Definition cv.hpp:9996
UNIMOD_AHA_Alkyne
AHA-Alkyne: Azidohomoalanine (AHA) bound to propargylglycine-NH2 (alkyne).
Definition cv.hpp:11280
MS_delayed_extraction
delayed extraction: The application of the accelerating voltage pulse after a time delay in desorptio...
Definition cv.hpp:1170
MS_MSn_OBSOLETE
MSn (multiple stage mass spectrometry): Multiple stages of precursor ion m/z selection followed by pr...
Definition cv.hpp:1320
MS_HCTultra_PTM
HCTultra PTM: Bruker Daltonics' HCTultra PTM: ESI TOF, Nanospray, APCI, APPI, PTR.
Definition cv.hpp:2766
UNIMOD_ADP_Ribosyl
ADP-Ribosyl: ADP Ribose addition.
Definition cv.hpp:9789
MS_SRM_feature_level_quantitation
SRM feature level quantitation: Selected Reaction Monitoring feature level quantitation.
Definition cv.hpp:7290
UO_quart
quart: An imperial volume unit which is equivalent to 1,136.5225 millilitres, or two pints.
Definition cv.hpp:14880
MS_FASTA_format
FASTA format: The sequence database was stored in the FASTA format.
Definition cv.hpp:4452
UNIMOD_O_Et_N_diMePhospho
O-Et-N-diMePhospho: O-ethyl, N-dimethyl phosphate.
Definition cv.hpp:12219
MS_frag__iTRAQ_4plex_reporter_ion
frag: iTRAQ 4plex reporter ion: Standard reporter ion for iTRAQ 4Plex. The value slot holds the integ...
Definition cv.hpp:8463
UO_mass_density_unit
mass density unit: A density unit which is a standard measure of the mass of a substance in a given v...
Definition cv.hpp:13959
MS_radical_ion_OBSOLETE
radical ion: An ion, either a cation or anion, containing unpaired electrons in its ground state....
Definition cv.hpp:1701
MS_t_test_p_value
t-test p-value: P-value of t-Test of two groups.
Definition cv.hpp:5979
MS_UniProtKB_text_sequence_format
UniProtKB text sequence format: Text-based format used by UniProtKB for sequence entries.
Definition cv.hpp:8436
MS_SILAC_quantitation_analysis
SILAC quantitation analysis: SILAC workflow (heavy, light, and sometimes medium peak).
Definition cv.hpp:5919
UNIMOD_dHex_1_Hex_1_HexNAc_3_NeuAc_1_
dHex(1)Hex(1)HexNAc(3)NeuAc(1): DHex Hex HexNAc(3) NeuAc.
Definition cv.hpp:13035
PEFF_NcbiTaxId
NcbiTaxId: NCBI taxonomy identifier.
Definition cv.hpp:183
UNIMOD_3_phosphoglyceryl
3-phosphoglyceryl: 3-phosphoglyceryl.
Definition cv.hpp:12273
MS_Progenesis_protein_raw_abundance
Progenesis:protein raw abundance: The data type raw abundance for proteins produced by Progenesis LC-...
Definition cv.hpp:6090
MS_baseline_array
baseline array: A data array of signal baseline values (the signal in the absence of analytes).
Definition cv.hpp:8043
MS_distributed_normalized_spectral_abundance_factor
distributed normalized spectral abundance factor: A distributed normalized spectral abundance factor ...
Definition cv.hpp:8097
MS_metastable_ion_OBSOLETE
metastable ion: An ion that is formed with internal energy higher than the threshold for dissociation...
Definition cv.hpp:1677
MS_IDMS_OBSOLETE
IDMS (isotope dilution mass spectrometry): A quantitative mass spectrometry technique in which an iso...
Definition cv.hpp:1053
MS_quadratic
quadratic: The mass scan is done in quadratic mode.
Definition cv.hpp:603
UNIMOD_Pro__Trp
Pro->Trp: Pro->Trp substitution.
Definition cv.hpp:11778
MS_peptide_attribute_calculation_software
peptide attribute calculation software: Software used to predict or calculate numerical attributes of...
Definition cv.hpp:3321
MS_Bruker_BAF_format
Bruker BAF format: Bruker BAF raw file format.
Definition cv.hpp:3144
MS_progeny_ion_OBSOLETE
progeny ion: A charged product of a series of consecutive reactions that includes product ions,...
Definition cv.hpp:1602
MS_TagRecon
TagRecon: Tabb Lab software for reconciling sequence tags to a protein database.
Definition cv.hpp:5163
MS_enhanced_multiply_charged_spectrum
enhanced multiply charged spectrum: MS1 spectrum that is enriched in multiply-charged ions compared t...
Definition cv.hpp:3054
MS_EVOQ_Qube
EVOQ Qube: Bruker Daltonics' EVOQ Qube: LC-triple quadrupole.
Definition cv.hpp:7344
MS_ACQUITY_UPLC_H_Class_Bio
ACQUITY UPLC H-Class Bio: Waters LC-system ACQUITY UPLC H-Class Bio.
Definition cv.hpp:5703
MS_group_representative
group representative: An arbitrary and optional flag applied to exactly one protein per group to indi...
Definition cv.hpp:7659
UNIMOD_Hex_3_HexNAc_6_
Hex(3)HexNAc(6): Hex(3) HexNAc(6).
Definition cv.hpp:13371
MS_ionization_cross_section_OBSOLETE
ionization cross section: A measure of the probability that a given ionization process will occur whe...
Definition cv.hpp:1038
UNIMOD_dHex_1_Hex_6_HexNAc_4_
dHex(1)Hex(6)HexNAc(4): DHex Hex(6) HexNAc(4).
Definition cv.hpp:12726
MS______FL__
(?<=[FL]): Regular expression for PepsinA.
Definition cv.hpp:4419
MS_reporter_ion_intensity
reporter ion intensity: Intensity of MS2 reporter ion (e.g. iTraq).
Definition cv.hpp:5955
UNIMOD_Val__Ser
Val->Ser: Val->Ser substitution.
Definition cv.hpp:11913
UNIMOD_Ser__His
Ser->His: Ser->His substitution.
Definition cv.hpp:11847
MS_peptide_labeling_state
peptide labeling state: A state description of how a peptide might be isotopically or isobarically la...
Definition cv.hpp:3372
UNIMOD_s_GlcNAc
s-GlcNAc: O3S1HexNAc1.
Definition cv.hpp:12339
MS_DB_source_UniProt
DB source UniProt: Database source UniProt.
Definition cv.hpp:4188
UNIMOD_Hex_1_Pent_3_Me_1_
Hex(1)Pent(3)Me(1): Hex Pent(3) Me.
Definition cv.hpp:13647
UNIMOD_Hex_3_HexNAc_3_Sulf_1_
Hex(3)HexNAc(3)Sulf(1): Hex(3) HexNAc(3) Sulf.
Definition cv.hpp:13026
MS_high_intensity_threshold
high intensity threshold: Threshold above which some action is taken.
Definition cv.hpp:2565
MS_ProteomeDiscoverer_Spectrum_Selector_Unrecognized_MS_Order_Replacements
ProteomeDiscoverer:Spectrum Selector:Unrecognized MS Order Replacements: Specifies the MS scan order ...
Definition cv.hpp:5271
MS_pymzML
pymzML: Python module to interface mzML Data.
Definition cv.hpp:6156
MS_Q_Exactive_HF
Q Exactive HF: Thermo Scientific Q Exactive.
Definition cv.hpp:8019
UNIMOD_OxArgBiotinRed
OxArgBiotinRed: Oxidized arginine biotinylated with biotin-LC-hydrazide, reduced.
Definition cv.hpp:9591
UNIMOD_Gln__Thr
Gln->Thr: Gln->Thr substitution.
Definition cv.hpp:11808
UNIMOD_Dimethyl
Dimethyl: Di-Methylation.
Definition cv.hpp:9453
MS_Paragon__search_effort
Paragon: search effort: The Paragon method setting that controls the two major modes of search effort...
Definition cv.hpp:7725
UNIMOD_Methyl_2H_3_
Methyl:2H(3): Deuterated methyl ester.
Definition cv.hpp:9894
MS_external_HDF5_dataset
external HDF5 dataset: The HDF5 dataset location containing the binary data, relative to the dataset ...
Definition cv.hpp:8946
MS_Experiment_additional_parameter
Experiment additional parameter: Root node for terms relating to the description of an Experiment in ...
Definition cv.hpp:8955
UNIMOD_Hex_4_HexNAc_4_Me_2_Pent_1_
Hex(4)HexNAc(4)Me(2)Pent(1): Hex(4) HexNAc(4) Me(2) Pent.
Definition cv.hpp:12558
UNIMOD_Dehydro
Dehydro: Half of a disulfide bridge.
Definition cv.hpp:10053
UNIMOD_Glu__pyro_Glu
Glu->pyro-Glu: Pyro-glu from E.
Definition cv.hpp:9432
UO_cells_per_milliliter
cells per milliliter: A unit of cell concentration which is equal to one cell in a volume of 1 millil...
Definition cv.hpp:14400
MS_SEQUEST_LimitTo
SEQUEST:LimitTo: Specify "number of dtas shown" as value of the CVParam.
Definition cv.hpp:3615
MS_modified_nucleic_acid_sequence
modified nucleic acid sequence: Specification of the modified nucleic acid sequence....
Definition cv.hpp:6534
MS_PerSeptive_PKS_format
PerSeptive PKS format: PerSeptive peak list file format.
Definition cv.hpp:4164
UNIMOD_FMNH
FMNH: Flavin mononucleotide.
Definition cv.hpp:10140
UNIMOD_GluGlu
GluGlu: Diglutamyl.
Definition cv.hpp:10251
UNIMOD_Pent_1_HexNAc_1_
Pent(1)HexNAc(1): Pent HexNAc.
Definition cv.hpp:13635
MS_ProteomeDiscoverer_Mascot_Mascot_Server_URL
ProteomeDiscoverer:Mascot:Mascot Server URL: URL (Uniform resource Locator) of the Mascot server.
Definition cv.hpp:5361
UNIMOD_Quinone
Quinone: Quinone.
Definition cv.hpp:10098
MS_raw_data_file
raw data file: Describes the type of file and its content.
Definition cv.hpp:2340
MS______ALIV_____P_
(?<=[ALIV])(?!P): Regular expression for leukocyte elastase.
Definition cv.hpp:6294
MS_resolution_array
resolution array: A data array of resolution values.
Definition cv.hpp:8040
MS_Pegasus_III
Pegasus III: LECO nominal mass resolution time-of-flight GC mass spectrometer.
Definition cv.hpp:7281
MS_ProteomeDiscoverer_SEQUEST_Calculate_Probability_Score
ProteomeDiscoverer:SEQUEST:Calculate Probability Score: Determines whether to calculate a probability...
Definition cv.hpp:5421
MS_ProteinScape_Gel
ProteinScape Gel: Source data for this mzIdentML was a ProteinScape Gel.
Definition cv.hpp:4248
MS_percent_of_base_peak_times_100
percent of base peak times 100: The magnitude of a peak expressed in terms of the percentage of the m...
Definition cv.hpp:3420
PEFF_Length
Length: Sequence length.
Definition cv.hpp:192
MS_three_sample_run
three sample run: The raw file contains the run of three samples (e.g. 3-plex SILAC).
Definition cv.hpp:5874
MS_API_165
API 165: Applied Biosystems/MDS SCIEX API 165 MS.
Definition cv.hpp:8214
UNIMOD_Label_13C_1_2H_3_
Label:13C(1)2H(3): SILAC.
Definition cv.hpp:11022
MS_ASN_1
ASN.1: The sequence database was stored in the Abstract Syntax Notation 1 format.
Definition cv.hpp:4455
MS_SEQUEST_sort_by_TIC
SEQUEST:sort by TIC: Sort order of SEQUEST search results given by the total ion current.
Definition cv.hpp:3681
UNIMOD_Hex_4_HexNAc_3_Pent_1_
Hex(4)HexNAc(3)Pent(1): Hex(4) HexNAc(3) Pent.
Definition cv.hpp:12483
MS_SMILES_string
SMILES string: The simplified molecular input line entry specification or SMILES is a specification f...
Definition cv.hpp:3306
MS_MaxQuant_P_site_localization_probability_threshold
MaxQuant:P-site localization probability threshold: Threshold for MaxQuant:P-site localization probab...
Definition cv.hpp:8145
MS_resolution_measurement_method
resolution measurement method: Which of the available standard measures is used to define whether two...
Definition cv.hpp:297
UNIMOD_Carboxyethyl
Carboxyethyl: Carboxyethyl.
Definition cv.hpp:10065
MS_ultima
ultima: IonSpec Ultima MS.
Definition cv.hpp:966
UO_unit_of_normality
unit of normality: A unit of concentration which highlights the chemical nature of salts.
Definition cv.hpp:14025
UNIMOD_GIST_Quat_2H_3_
GIST-Quat:2H(3): Quaternary amine labeling reagent heavy (+3amu) form, N-term & K.
Definition cv.hpp:9522
MS_frag__TMT_ETD_reporter_ion
frag: TMT ETD reporter ion: Standard reporter ion for TMT with ETD fragmentation. The value slot hold...
Definition cv.hpp:8472
UO_pascal
pascal: A pressure unit which is equal to the pressure or stress on a surface caused by a force of 1 ...
Definition cv.hpp:14133
UNIMOD_MolybdopterinGD_Delta_S__1_Se_1_
MolybdopterinGD+Delta:S(-1)Se(1): L-selenocysteinyl molybdenum bis(molybdopterin guanine dinucleotide...
Definition cv.hpp:10158
MS_Mascot_query_number
Mascot query number: Native format defined by query=xsd:nonNegativeInteger.
Definition cv.hpp:4989
MS_ITQ_1100
ITQ 1100: Thermo Scientific ITQ 1100 GC-MS.
Definition cv.hpp:2583
UNIMOD_Difuran
Difuran: Chemical modification of the diiodinated sites of thyroglobulin by Suzuki reaction.
Definition cv.hpp:12066
UNIMOD_Asn__Tyr
Asn->Tyr: Asn->Tyr substitution.
Definition cv.hpp:10611
MS_TopPIC_proteoform_level_cutoff_value
TopPIC:proteoform-level cutoff value: Proteoform-level cutoff value for filtering identified proteofo...
Definition cv.hpp:9189
UNIMOD_dHex_1_Hex_7_HexNAc_3_Sulf_1_
dHex(1)Hex(7)HexNAc(3)Sulf(1): DHex Hex(7) HexNAc(3) Sulf.
Definition cv.hpp:12744
UNIMOD_dHex_1_Hex_5_HexNAc_4_Pent_1_
dHex(1)Hex(5)HexNAc(4)Pent(1): DHex Hex(5) HexNAc(4) Pent.
Definition cv.hpp:12699
MS_Lipid_Data_Analyzer
Lipid Data Analyzer: Lipid Data Analyzer software for lipid quantification.
Definition cv.hpp:9318
UNIMOD_Trp__Phe
Trp->Phe: Trp->Phe substitution.
Definition cv.hpp:11934
UNIMOD_Glu__Val
Glu->Val: Glu->Val substitution.
Definition cv.hpp:10473
MS_Synapt_HDMS
Synapt HDMS: Waters oa-ToF based Synapt HDMS.
Definition cv.hpp:5757
MS_lipidomics_analysis_software
lipidomics analysis software: Lipidomics analysis software.
Definition cv.hpp:9315
MS_chemical_compound_attribute
chemical compound attribute: A describable property of a chemical compound.
Definition cv.hpp:3279
UNIMOD_Hex_2_HexNAc_2_Sulf_1_
Hex(2)HexNAc(2)Sulf(1): Hex(2) HexNAc(2) Sulf.
Definition cv.hpp:12843
MS_chromatogram_title
chromatogram title: A free-form text title describing a chromatogram.
Definition cv.hpp:3123
MS_iTRAQ_reagent_119
iTRAQ reagent 119: The name of the sample labelled with the iTRAQ reagent 119.
Definition cv.hpp:8340
MS_number_of_decoy_sequences
number of decoy sequences: The number of decoy sequences, if the concatenated target-decoy approach i...
Definition cv.hpp:7761
UO_millisecond
millisecond: A time unit which is equal to one thousandth of a second or 10^[-3] s.
Definition cv.hpp:13887
MS_6310_Ion_Trap_LC_MS
6310 Ion Trap LC/MS: The 6310 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined w...
Definition cv.hpp:2016
UNIMOD_Thr__Trp
Thr->Trp: Thr->Trp substitution.
Definition cv.hpp:11886
UO_tesla
tesla: A magnetic flux density unit which is equal to one weber per square meter.
Definition cv.hpp:14481
MS_electron_energy_obsolete_OBSOLETE
electron energy obsolete: The potential difference through which electrons are accelerated before the...
Definition cv.hpp:1026
MS_ADC
ADC (analog-digital converter): Analog-to-digital converter (abbreviated ADC, A/D or A to D) is an el...
Definition cv.hpp:687
UNIMOD_Thr__Cys
Thr->Cys: Thr->Cys substitution.
Definition cv.hpp:11862
UNIMOD_Glutathione
Glutathione: Glutathione disulfide.
Definition cv.hpp:9507
UNIMOD_Cys__Trp
Cys->Trp: Cys->Trp substitution.
Definition cv.hpp:10425
UO_micromolal
micromolal: A molality unit which is equal to one millionth of a molal or 10^[-6] m.
Definition cv.hpp:14013
UNIMOD_Hydroxycinnamyl
Hydroxycinnamyl: Hydroxycinnamyl.
Definition cv.hpp:10134
UO_kilowatt_hour
kilowatt-hour: An energy unit which is equal to 1,000 watt-hours.
Definition cv.hpp:14469
MS_param__internal_yb_ion
param: internal yb ion: Parameter information, type of product: internal yb ion.
Definition cv.hpp:4617
MS_Isotopologue_ion_OBSOLETE
Isotopologue ion: An ion that differs only in the isotopic composition of one or more of its constitu...
Definition cv.hpp:1671
UNIMOD_Thr__Val
Thr->Val: Thr->Val substitution.
Definition cv.hpp:11883
MS_TopMG_proteoform_level_cutoff_value
TopMG:proteoform-level cutoff value: Proteoform-level cutoff value for filtering identified proteofor...
Definition cv.hpp:9249
MS_Phenyx_Turbo_ErrorTol
Phenyx:Turbo:ErrorTol: The maximal allowed fragment m/z error filter considered in the turbo mode of ...
Definition cv.hpp:4548
UO_micromolar
micromolar: A unit of molarity which is equal to one millionth of a molar or 10^[-6] M.
Definition cv.hpp:13995
MS_msalign_format
msalign format: msalign file format.
Definition cv.hpp:9120
MS_analyzer_type_OBSOLETE
analyzer type: The common name of the particular analyzer stage being described. Synonym of mass anal...
Definition cv.hpp:291
MS_purgatory_OBSOLETE
purgatory: Terms that will likely become obsolete unless there are wails of dissent.
Definition cv.hpp:2037
MS_consecutive_reaction_monitoring_OBSOLETE_1000244
consecutive reaction monitoring: MSn experiment with three or more stages of m/z separation and in wh...
Definition cv.hpp:1158
MS_ion__OBSOLETE
ion?: An atomic or molecular species having a net positive or negative electric charge.
Definition cv.hpp:1668
MS_number_of_matched_peaks
number of matched peaks: The number of peaks that were matched as qualified by the ion series conside...
Definition cv.hpp:3822
UNIMOD_Hex_1_HexNAc_1_NeuAc_1_Ac_1_
Hex(1)HexNAc(1)NeuAc(1)Ac(1): Ac Hex HexNAc NeuAc.
Definition cv.hpp:13401
UO_plane_angle_unit
plane angle unit: A unit which is a standard measure of the angle formed by two straight lines in the...
Definition cv.hpp:14169
MS_ProteinScape_SequestMetaScore
ProteinScape:SequestMetaScore: The SEQUEST meta score calculated by ProteinScape from the original SE...
Definition cv.hpp:4923
UNIMOD_Hex_9_Phos_3_
Hex(9)Phos(3): Hex(9) Phos(3).
Definition cv.hpp:13269
UNIMOD_Pro__Gln
Pro->Gln: Pro->Gln substitution.
Definition cv.hpp:10632
MS_structural_formula
structural formula: A chemical formula showing the number of atoms of each element in a molecule,...
Definition cv.hpp:3303
MS_desorption_ionization
desorption ionization: The formation of ions from a solid or liquid material after the rapid vaporiza...
Definition cv.hpp:1176
UO_kilogram
kilogram: A mass unit which is equal to the mass of the International Prototype Kilogram kept by the ...
Definition cv.hpp:13830
UNIMOD_Sulfo
Sulfo: O-Sulfonation.
Definition cv.hpp:9462
MS_molecular_mass_OBSOLETE
molecular mass: The mass of one mole of a molecular substance (6.022 1415(10) x 10^23 molecules).
Definition cv.hpp:1065
UNIMOD_Hex_1_HexNAc_1_NeuAc_1_
Hex(1)HexNAc(1)NeuAc(1): Hex1HexNAc1NeuAc1.
Definition cv.hpp:9672
UNIMOD_Xle__Ser
Xle->Ser: Leu/Ile->Ser substitution.
Definition cv.hpp:10560
UO_tera
tera: A prefix in the metric system denoting a factor of ten to the power of 12.
Definition cv.hpp:14670
UO_volt_per_meter
volt per meter: The volt per meter is a unit of electric field strength equal to the a potential diff...
Definition cv.hpp:14601
UNIMOD_Gln__Asp
Gln->Asp: Gln->Asp substitution.
Definition cv.hpp:11790
MS_protein_short_name
protein short name: A short name or symbol of a protein (e.g., HSF 1 or HSF1_HUMAN).
Definition cv.hpp:3351
MS_max_peak_picking
max peak picking (height peak picking): Spectral peak processing conducted on the acquired data to co...
Definition cv.hpp:3099
MS_DiLeu_quantitation_analysis
DiLeu quantitation analysis: Quantification analysis using the amine-reactive dimethyl leucine (DiLeu...
Definition cv.hpp:8706
MS_PTMProphet
PTMProphet: A program in the TPP that calculates PTM localization probabilities by re-analyzing the p...
Definition cv.hpp:7326
MS_BIRD
BIRD (blackbody infrared radiative dissociation): A special case of infrared multiphoton dissociation...
Definition cv.hpp:1149
UNIMOD_NHS_LC_Biotin
NHS-LC-Biotin: NHS-LC-Biotin.
Definition cv.hpp:9549
UNIMOD_Hex_4_HexNAc_6_
Hex(4)HexNAc(6): Hex(4) HexNAc(6).
Definition cv.hpp:12681
UO_kilogram_per_meter
kilogram per meter: An area density unit which is equal to the mass of an object in kilograms divided...
Definition cv.hpp:14349
MS_SEQUEST_Chromatogram
SEQUEST:Chromatogram:
Definition cv.hpp:3765
MS_Peer_reviewed_dataset
Peer-reviewed dataset: Dataset has been peer-reviewed somehow.
Definition cv.hpp:8985
MS_ProteomeDiscoverer_Use_Neutral_Loss_b_Ions
ProteomeDiscoverer:Use Neutral Loss b Ions: Determines whether b ions with neutral loss are used for ...
Definition cv.hpp:5469
MS_TOPP_feature_linker
TOPP feature linker: Feature linker component of the TOPP software.
Definition cv.hpp:6969
MS_adduct_ion_formula
adduct ion formula: Adduct formation formula specified by the given value.
Definition cv.hpp:8859
UNIMOD_dHex_1_Hex_1_HexNAc_1_NeuGc_1_
dHex(1)Hex(1)HexNAc(1)NeuGc(1): DHex Hex HexNAc NeuGc —OR— Hex(2) HexNAc NeuAc.
Definition cv.hpp:12855
MS_temperature_array
temperature array: A data array of temperature measurements.
Definition cv.hpp:3165
UO_angle_unit
angle unit: A unit which is a standard measure of the figure or space formed by the junction of two l...
Definition cv.hpp:14166
MS_Q_Exactive
Q Exactive: Thermo Scientific Q Exactive.
Definition cv.hpp:6147
MS_spectrum_type
spectrum type: Spectrum type.
Definition cv.hpp:2286
UO_microgram_per_milliliter
microgram per milliliter: A mass unit density which is equal to mass of an object in micrograms divid...
Definition cv.hpp:14619
UNIMOD_Cation_Al_III_
Cation:Al[III]: Replacement of 3 protons by aluminium.
Definition cv.hpp:13578
MS_Conversion_to_mzData
Conversion to mzData: Conversion of a file format to Proteomics Standards Initiative mzData file form...
Definition cv.hpp:2247
MS_protein_level_statistical_threshold
protein-level statistical threshold: Estimated statistical threshold at protein-level.
Definition cv.hpp:7905
MS_electrospray_ionization
electrospray ionization: A process in which ionized species in the gas phase are produced from an ana...
Definition cv.hpp:507
MS_conversion_dynode
conversion dynode: A surface that is held at high potential such that ions striking the surface produ...
Definition cv.hpp:1611
UNIMOD_Hex_1_HexNAc_1_NeuAc_2_Ac_1_
Hex(1)HexNAc(1)NeuAc(2)Ac(1): Ac Hex HexNAc NeuAc(2).
Definition cv.hpp:12924
UNIMOD_Xle__Lys
Xle->Lys: Leu/Ile->Lys substitution.
Definition cv.hpp:10536
MS_TODOscoring_model_OBSOLETE
TODOscoring model: OBSOLETE: There is Phenyx:ScoringModel for Phenyx! Scoring model (more detailed gr...
Definition cv.hpp:3672
UNIMOD_Met__Lys
Met->Lys: Met->Lys substitution.
Definition cv.hpp:10593
UO_prefix
prefix:
Definition cv.hpp:13941
MS_ProteinExtractor_SequestUniqueScore
ProteinExtractor:SequestUniqueScore: In the final result each protein must have at least one peptide ...
Definition cv.hpp:4710
UNIMOD_Hex_1_NeuGc_1_
Hex(1)NeuGc(1): Hex NeuGc.
Definition cv.hpp:12381
MS_scan_mode_OBSOLETE
scan mode: OBSOLETE.
Definition cv.hpp:372
UNIMOD_dHex_2_Hex_3_HexA_1_HexNAc_1_Sulf_1_
dHex(2)Hex(3)HexA(1)HexNAc(1)Sulf(1): DHex(2) Hex(3) HexA HexNAc Sulf.
Definition cv.hpp:13050
MS_apex_ultra
apex ultra: Bruker Daltonics' apex ultra: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR.
Definition cv.hpp:2754
UNIMOD_Xlink_BMOE
Xlink:BMOE: Intact or monolink BMOE crosslinker.
Definition cv.hpp:10974
MS_precursor_recalculation
precursor recalculation: A process that recalculates existing precursor selected ions with one or mor...
Definition cv.hpp:3012
UNIMOD_Tris
Tris: Tris adduct causes 104 Da addition at asparagine-succinimide intermediate.
Definition cv.hpp:13440
UNIMOD_dHex_3_Hex_3_HexNAc_3_NeuAc_1_
dHex(3)Hex(3)HexNAc(3)NeuAc(1): DHex(3) Hex(3) HexNAc(3) NeuAc.
Definition cv.hpp:13296
MS_sophisticated_numerical_annotation_procedure
sophisticated numerical annotation procedure: It searches for known patterns in the measured spectrum...
Definition cv.hpp:6423
UO_absorbance_unit
absorbance unit: A dimensionless logarithmic unit assigned to a measure of absorbance of light throug...
Definition cv.hpp:14604
MS_ProteomeDiscoverer_Spectrum_Exporter_File_name
ProteomeDiscoverer:Spectrum Exporter:File name: Name of the output file that contains the exported da...
Definition cv.hpp:5520
MS_mass_spectrometry_mass_spectrometry_OBSOLETE
mass spectrometry/mass spectrometry: The acquisition, study and spectra of the electrically charged p...
Definition cv.hpp:1311
MS_charge_permutation_reaction_OBSOLETE
charge permutation reaction: The reaction of an ion with a neutral species with a resulting change in...
Definition cv.hpp:1818
MS_alternate_single_letter_codes
alternate single letter codes: List of standard residue one letter codes which are used to replace a ...
Definition cv.hpp:4488
UNIMOD_dHex_1_Hex_3_
dHex(1)Hex(3): Hex3dHex1.
Definition cv.hpp:12243
MS_TIC
TIC (total ion current): The sum of all the separate ion currents carried by the ions of different m/...
Definition cv.hpp:1410
MS_fringing_field
fringing field: The electric or magnetic field that extends from the edge of a sector,...
Definition cv.hpp:1491
MS_Surveyor_PDA
Surveyor PDA: Surveyor PDA.
Definition cv.hpp:2532
MS_peptide_consensus_m_z
peptide consensus m/z: Peptide consensus mass/charge ratio.
Definition cv.hpp:6645
UNIMOD_Val__Trp
Val->Trp: Val->Trp substitution.
Definition cv.hpp:11919
MS_boxcar_smoothing
boxcar smoothing (moving average smoothing): Reduces intensity spikes by averaging each point with tw...
Definition cv.hpp:3039
MS_CXP
CXP (Collision cell exit potential): Potential difference between Q2 and Q3 in a triple quadrupole in...
Definition cv.hpp:6255
MS_TripleTOF_5600
TripleTOF 5600: SCIEX TripleTOF 5600, a quadrupole - quadrupole - time-of-flight mass spectrometer.
Definition cv.hpp:3504
UNIMOD_Myristoleyl
Myristoleyl: (cis-delta 5)-tetradecaenoyl.
Definition cv.hpp:9630
MS_ProteinLynx_Global_Server
ProteinLynx Global Server: Waters software for data analysis.
Definition cv.hpp:2463
MS_Progenesis_protein_normalised_abundance
Progenesis:protein normalised abundance: The data type normalised abundance for proteins produced by ...
Definition cv.hpp:6084
MS_PSM_level_global_confidence
PSM-level global confidence: Estimation of the global confidence of peptide spectrum matches.
Definition cv.hpp:7845
MS_OMEGA_2001
OMEGA-2001: IonSpec OMEGA-2001 MS.
Definition cv.hpp:912
MS_Xevo_TQ_S_micro
Xevo TQ-S micro: Waters Corporation Xevo TQ-S micro triple quadrupole mass spectrometer.
Definition cv.hpp:8613
MS_FA
FA (flowing afterglow): An ion source immersed in a flow of helium or other inert buffer gas that car...
Definition cv.hpp:1227
UNIMOD_Met_loss
Met-loss: Removal of initiator methionine from protein N-terminus.
Definition cv.hpp:10920
MS_frag__c_ion
frag: c ion: Fragmentation information, type of product: c ion.
Definition cv.hpp:4125
MS_Progenesis_normalization
Progenesis normalization: Normalization as performed by Progenesis LC-MS.
Definition cv.hpp:6015
MS_pep_FDR_threshold
pep:FDR threshold: False-discovery rate threshold for peptides.
Definition cv.hpp:4743
MS_Phenyx_Peptides1
Phenyx:Peptides1: First number of phenyx result "#Peptides".
Definition cv.hpp:4581
UNIMOD_Ser__Phe
Ser->Phe: Ser->Phe substitution.
Definition cv.hpp:10695
MS_Synapt_MS
Synapt MS: Waters oa-ToF based Synapt MS.
Definition cv.hpp:5760
MS_Orbitrap_Fusion_ETD
Orbitrap Fusion ETD: Thermo Scientific Orbitrap Fusion with ETD.
Definition cv.hpp:7701
MS_ProteomeDiscoverer_Xtract_Highest_Charge
ProteomeDiscoverer:Xtract:Highest Charge: Highest charge state that is allowed for the deconvolution ...
Definition cv.hpp:5313
MS_DBImporter
DBImporter: Imports data to an OpenMS database.
Definition cv.hpp:2934
MS_ICPL_reagent
ICPL reagent: Isotope coded protein labeling reagent.
Definition cv.hpp:8271
UNIMOD_Ethyl_Deamidated
Ethyl+Deamidated: Deamidation followed by esterification with ethanol.
Definition cv.hpp:11133
MS_cationized_molecule_OBSOLETE
cationized molecule: An ion formed by the association of a cation with a neutral molecule,...
Definition cv.hpp:1644
MS_frag__x_ion___NH3
frag: x ion - NH3: Fragmentation information, type of product: x ion without ammonia.
Definition cv.hpp:4965
MS_database_UniProtKB_TrEMBL
database UniProtKB/TrEMBL: The name of the UniProtKB/TrEMBL database.
Definition cv.hpp:6630
MS_TopMG_spectral_p_value
TopMG:spectral p-value: TopMG spectrum-level p-value.
Definition cv.hpp:9282
UNIMOD_Asn__Gln
Asn->Gln: Asn->Gln substitution.
Definition cv.hpp:11739
UO_ounce
ounce: An imperial mass unit which is equivalent to 28.349,523,125 grams, or 1/16 of 1 pound.
Definition cv.hpp:14892
UNIMOD_Thiadiazole
Thiadiazole: Thiadiazolydation of Cys.
Definition cv.hpp:11364
MS_Q_Tof_Premier
Q-Tof Premier: Waters oa-ToF based Q-Tof Premier.
Definition cv.hpp:2568
UNIMOD_Carboxyethylpyrrole
Carboxyethylpyrrole: Carboxyethylpyrrole.
Definition cv.hpp:13413
MS_value_between_0_and_1000_inclusive
value between 0 and 1000 inclusive: Value range for scores.
Definition cv.hpp:8679
MS_Bruker_TDF_format
Bruker TDF format: Bruker TDF raw file format.
Definition cv.hpp:8874
MS_param__d_ion
param: d ion: Parameter information, type of product: side chain loss d ion.
Definition cv.hpp:4200
MS_source_potential
source potential: Potential difference at the MS source in volts.
Definition cv.hpp:2058
MS_mass_spectrometer_OBSOLETE
mass spectrometer: An instrument that measures the mass-to-charge ratio and relative abundances of io...
Definition cv.hpp:1440
UNIMOD_Hex_2_HexNAc_2_NeuAc_2_
Hex(2)HexNAc(2)NeuAc(2): Hex(2) HexNAc(2) NeuAc(2).
Definition cv.hpp:13101
MS_DELTAplusXP
DELTAplusXP: ThermoFinnigan DELTAplusXP MS.
Definition cv.hpp:828
MS_anti_aromatic_ion_OBSOLETE
anti-aromatic ion: A planar cyclic ion with 4n ? electrons and is therefore not aromatic.
Definition cv.hpp:1641
MS_API_350
API 350: Applied Biosystems/MDS SCIEX API 350 MS.
Definition cv.hpp:8220
MS_isobaric_label_quantitation_analysis
isobaric label quantitation analysis: Quantitation analysis using an isobaric labelling workflow.
Definition cv.hpp:6468
UNIMOD_Val__Met
Val->Met: Val->Met substitution.
Definition cv.hpp:10761
MS_inlet_type
inlet type: The nature of the sample inlet.
Definition cv.hpp:282
UNIMOD_Pro__Lys
Pro->Lys: Pro->Lys substitution.
Definition cv.hpp:11766
MS_taxonomy__Swiss_Prot_ID
taxonomy: Swiss-Prot ID: This term is used if a swiss prot taxonomy id is specified,...
Definition cv.hpp:4806
UO_milliliter_per_cubic_meter
milliliter per cubic meter: A volume per unit volume unit which is equal to one millionth of a liter ...
Definition cv.hpp:14415
MS_NA_sequence
NA sequence: The sequence is a nucleic acid sequence.
Definition cv.hpp:4437
UNIMOD_dHex_2_Hex_3_HexNAc_3_NeuAc_2_
dHex(2)Hex(3)HexNAc(3)NeuAc(2): DHex(2) Hex(3) HexNAc(3) NeuAc(2).
Definition cv.hpp:13317
MS_thresholding
thresholding (low intensity data point removal): The removal of very low intensity data points that a...
Definition cv.hpp:2436
MS_coated_glass_plate
coated glass plate: Coated glass plate.
Definition cv.hpp:6240
UNIMOD_Succinyl_2H_4_
Succinyl:2H(4): Succinic anhydride labeling reagent, heavy form (+4amu, 4H2), N-term & K.
Definition cv.hpp:9534
UO_decibel
decibel: A ratio unit which is an indicator of sound power per unit area.
Definition cv.hpp:14574
UNIMOD_SulfurDioxide
SulfurDioxide: SulfurDioxide.
Definition cv.hpp:12171
MS_protein_inference_confidence_category
protein inference confidence category: Confidence category of inferred protein (conclusive,...
Definition cv.hpp:5214
UNIMOD_Iminobiotin
Iminobiotin: Iminobiotinylation.
Definition cv.hpp:9540
MS_ProteoAnnotator_non_canonical_gene_model_score
ProteoAnnotator:non-canonical gene model score: The sum of peptide-level scores for peptides mapped o...
Definition cv.hpp:7872
MS_peptide_group_ID
peptide group ID: Peptide group identifier for peptide-level stats.
Definition cv.hpp:8010
UNIMOD_Hex_3_HexNAc_4_NeuAc_2_
Hex(3)HexNAc(4)NeuAc(2): Hex(3) HexNAc(4) NeuAc(2).
Definition cv.hpp:13734
MS_de_facto_standard
de facto standard: A practice or product that has become a standard not because it has been approved ...
Definition cv.hpp:3402
UNIMOD_Gly_loss_Amide
Gly-loss+Amide: Enzymatic glycine removal leaving an amidated C-terminus.
Definition cv.hpp:10971
UNIMOD_Hex_1_HexNAc_2_Pent_1_
Hex(1)HexNAc(2)Pent(1): Hex1HexNAc2Pent1.
Definition cv.hpp:9678
UNIMOD_Hex_4_HexA_1_
Hex(4)HexA(1): Hex(4) HexA.
Definition cv.hpp:13656
MS_Experimental_information_has_been_refined_since_this_experiment_was_originally_made_publicly_available
Experimental information has been refined since this experiment was originally made publicly availabl...
Definition cv.hpp:9024
MS_spectrum_identifier_nativeID_format
spectrum identifier nativeID format: Native format defined by spectrum=xsd:nonNegativeInteger.
Definition cv.hpp:3003
MS_Applied_Biosystems_instrument_model
Applied Biosystems instrument model: Applied Biosystems instrument model.
Definition cv.hpp:2085
MS_photomultiplier
photomultiplier: A detector for conversion of the ion/electron signal into photon(s) which are then a...
Definition cv.hpp:678
UNIMOD_Propionamide
Propionamide: Acrylamide adduct.
Definition cv.hpp:9423
UO_dots_per_inch
dots per inch: A spatial resolution unit which is a standard measure of the printing resolution,...
Definition cv.hpp:14517
MS_sample_batch
sample batch: Sample batch lot identifier.
Definition cv.hpp:435
MS_TOPP_FeatureFinderMetabo
TOPP FeatureFinderMetabo: Detects two-dimensional features in centroided LC-MS data of metabolites.
Definition cv.hpp:6954
MS_data_filtering
data filtering: Filtering out part of the data.
Definition cv.hpp:4863
UNIMOD_LRGG
LRGG: Ubiquitination.
Definition cv.hpp:10383
MS_HCT
HCT: Bruker Daltonics' HCT: ESI Q-TOF, Nanospray, APCI, APPI.
Definition cv.hpp:846
UO_byte
byte: An information unit which is equal to 8 bits.
Definition cv.hpp:14496
UNIMOD_Tyr__Ser
Tyr->Ser: Tyr->Ser substitution.
Definition cv.hpp:10791
MS_microflex
microflex: Bruker Daltonics' microflex: MALDI TOF.
Definition cv.hpp:897
UNIMOD_Cys__methylaminoAla
Cys->methylaminoAla: Carbamidomethylated Cys that undergoes beta-elimination and Michael addition of ...
Definition cv.hpp:11157
MS_ProteinExtractor_ProteinSolverUniqueScore
ProteinExtractor:ProteinSolverUniqueScore: In the final result each protein must have at least one pe...
Definition cv.hpp:4722
MS_contact_URL
contact URL: Uniform Resource Locator related to the contact person or organization.
Definition cv.hpp:2415
UNIMOD_Trp__Lys
Trp->Lys: Trp->Lys substitution.
Definition cv.hpp:11940
UNIMOD_Biotin_Thermo_88317
Biotin:Thermo-88317: Desthiobiotin fluorophosphonate.
Definition cv.hpp:11370
MS_PROTEINEER_dp
PROTEINEER dp: Bruker PROTEINEER dp software.
Definition cv.hpp:2859
MS_unlabeled_peptide
unlabeled peptide: A peptide that has not been labelled with heavier-than-usual isotopes....
Definition cv.hpp:3378
MS_DB_MW_filter
DB MW filter: Filtering applied specifically by protein molecular weight, specified as either a range...
Definition cv.hpp:3564
UNIMOD_Biotin_Invitrogen_M1602
Biotin:Invitrogen-M1602: Nalpha-(3-maleimidylpropionyl)biocytin.
Definition cv.hpp:11313
UNIMOD_Val__His
Val->His: Val->His substitution.
Definition cv.hpp:11895
MS_ATAQS
ATAQS: Software suite used to predict, select, and optimize transitions as well as analyze the result...
Definition cv.hpp:3483
MS_small_molecule_attribute
small molecule attribute: Attribute describing a small molecule.
Definition cv.hpp:6801
MS_curator_keyword
curator keyword: Keyword assigned by a data curator.
Definition cv.hpp:6198
UNIMOD_Hydroxymethyl
Hydroxymethyl: Hydroxymethyl.
Definition cv.hpp:10155
MS_data_stored_in_database
data stored in database: Source file for this mzIdentML was a data set in a database.
Definition cv.hpp:3780
MS_API_365
API 365: Applied Biosystems/MDS SCIEX API 365 MS.
Definition cv.hpp:8223
UNIMOD_dHex_2_Hex_2_HexNAc_3_Sulf_1_
dHex(2)Hex(2)HexNAc(3)Sulf(1): DHex(2) Hex(2) HexNAc(3) Sulf.
Definition cv.hpp:13095
MS_Thermo_nativeID_format
Thermo nativeID format: Native format defined by controllerType=xsd:nonNegativeInteger controllerNumb...
Definition cv.hpp:2976
MS_Q_Exactive_HF_X
Q Exactive HF-X: Thermo Scientific Q Exactive HF-X Hybrid Quadrupole Orbitrap MS.
Definition cv.hpp:9054
MS_PIA_protein_inference
PIA:protein inference: The used algorithm for the protein inference using PIA.
Definition cv.hpp:7635
UO_becquerel
becquerel: An activity (of a radionuclide) unit which is equal to the activity of a quantity of radio...
Definition cv.hpp:14196
MS_FindPairs
FindPairs: Software e.g. for SILAC and 14N/15N workflow, part of the PeakQuant suite.
Definition cv.hpp:6639
MS_open_split
open split: A division of flowing stream of liquid into two streams.
Definition cv.hpp:474
MS_spectrum_from_database_string_nativeID_format
spectrum from database string nativeID format: Native format defined by databasekey=xsd:string.
Definition cv.hpp:5001
UNIMOD_Asp__Met
Asp->Met: Asp->Met substitution.
Definition cv.hpp:11469
MS_MyriMatch
MyriMatch: Tabb Lab software for directly comparing peptides in a database to tandem mass spectra.
Definition cv.hpp:5157
MS_normalized_peptide_value
normalized peptide value: Normalized peptide value.
Definition cv.hpp:5964
UNIMOD_Hex_4_HexNAc_1_
Hex(4)HexNAc(1): Hex(4) HexNAc.
Definition cv.hpp:12873
UNIMOD_HPG
HPG: Hydroxyphenylglyoxal arginine.
Definition cv.hpp:9735
UNIMOD_Formylasparagine
Formylasparagine: In Bachi as Formylaspargine (typo?).
Definition cv.hpp:13599
UNIMOD_Thr__Xle
Thr->Xle: Thr->Leu/Ile substitution.
Definition cv.hpp:10746
MS_param__v_ion
param: v ion: Parameter information, type of product: side chain loss v ion.
Definition cv.hpp:4197
UO_milligram_per_kilogram
milligram per kilogram: A dose unit which is equal to 1 milligram of a toxic or pharmaceutical substa...
Definition cv.hpp:14721
UNIMOD_Label_13C_6__GG
Label:13C(6)+GG: 13C6 labeled ubiquitinylation residue.
Definition cv.hpp:10956
UNIMOD_2_monomethylsuccinyl
2-monomethylsuccinyl: S-(2-monomethylsuccinyl) cysteine.
Definition cv.hpp:12012
MS_TopPIC_spectral_p_value
TopPIC:spectral p-value: TopPIC spectrum-level p-value.
Definition cv.hpp:9216
MS_MS_GF_SpecEValue
MS-GF:SpecEValue: MS-GF spectral E-value.
Definition cv.hpp:6606
MS_aromatic_ion_OBSOLETE
aromatic ion: A planar cyclic ion that obeys the Hueckel (4n + 2) rule where n is a positive integer ...
Definition cv.hpp:1635
UNIMOD_Cys__Met
Cys->Met: Cys->Met substitution.
Definition cv.hpp:11439
MS_DeBunker_score
DeBunker:score: Score specific to DeBunker.
Definition cv.hpp:6345
MS_XCMS_area
XCMS:area: Feature intensity produced by XCMS findPeaks() from feature area that is not normalized by...
Definition cv.hpp:8919
MS_surface_ionization
surface ionization: The ionization of a neutral species when it interacts with a solid surface with a...
Definition cv.hpp:1791
MS_accuracy
accuracy: Accuracy is the degree of conformity of a measured mass to its actual value.
Definition cv.hpp:303
MS_Thermo_Finnigan_instrument_model
Thermo Finnigan instrument model: ThermoFinnigan from Thermo Electron Corporation instrument model.
Definition cv.hpp:714
MS_solariX
solariX: Bruker Daltonics' solariX: ESI, MALDI, Qh-FT_ICR.
Definition cv.hpp:5052
MS_PeptideShaker_PSM_score
PeptideShaker PSM score: The probability based PeptideShaker PSM score.
Definition cv.hpp:7848
UNIMOD_Ala__Asp
Ala->Asp: Ala->Asp substitution.
Definition cv.hpp:10404
MS_MALDI_Synapt_G2_MS
MALDI Synapt G2 MS: Waters oa-ToF based MALDI Synapt G2 MS.
Definition cv.hpp:5730
UO_colony_forming_unit_per_milliliter
colony forming unit per milliliter: A colony forming unit which a measure of viable bacterial numbers...
Definition cv.hpp:14436
UNIMOD_dHex_1_Hex_6_
dHex(1)Hex(6): Hex6dHex1.
Definition cv.hpp:12252
UNIMOD_iodoTMT
iodoTMT: Native iodoacetyl Tandem Mass Tag®.
Definition cv.hpp:12186
UNIMOD_Hex_9_HexNAc_2_
Hex(9)HexNAc(2): Hex(9) HexNAc(2).
Definition cv.hpp:12678
UNIMOD_Gly__Trp
Gly->Trp: Gly->Trp substitution.
Definition cv.hpp:10497
UNIMOD_Gly__Xle
Gly->Xle: Gly->Leu/Ile substitution.
Definition cv.hpp:11571
UNIMOD_Phycoerythrobilin
Phycoerythrobilin: Phycoerythrobilin.
Definition cv.hpp:10086
MS_Bruker_Daltonics_maXis_series
Bruker Daltonics maXis series: Bruker Daltonics' maXis series.
Definition cv.hpp:5046
UNIMOD_Delta_H_5_C_2_
Delta:H(5)C(2): Dimethylation of proline residue.
Definition cv.hpp:10365
MS_ProteomeDiscoverer_Peptide_CTerminus
ProteomeDiscoverer:Peptide CTerminus: Static modification for the C terminal of the peptide used duri...
Definition cv.hpp:5448
MS_ICPL_reagent_0
ICPL reagent 0: The name of the sample labelled with the ICPL reagent 0.
Definition cv.hpp:8274
UO_angular_velocity_unit
angular velocity unit: A unit which is a standard measure of the rate of angular movement about an ax...
Definition cv.hpp:13950
UNIMOD_dHex_1_Hex_1_HexNAc_4_
dHex(1)Hex(1)HexNAc(4): DHex Hex HexNAc(4).
Definition cv.hpp:12996
UNIMOD_Thr__His
Thr->His: Thr->His substitution.
Definition cv.hpp:11877
UNIMOD_LG_lactam_R
LG-lactam-R: Levuglandinyl - arginine lactam adduct.
Definition cv.hpp:10320
MS_Bruker_Agilent_YEP_nativeID_format__combined_spectra
Bruker/Agilent YEP nativeID format, combined spectra: Bruker/Agilent comma separated list of spectra ...
Definition cv.hpp:8409
MS_no_special_processing
no special processing: No special processing performed.
Definition cv.hpp:7935
UO_watt_per_meter_kelvin
watt per meter kelvin: An heat conduction unit which is equal to one watt divided by meter kelvin.
Definition cv.hpp:14592
MS_original_nucleic_acid_sequence
original nucleic acid sequence: Specification of the original nucleic acid sequence,...
Definition cv.hpp:6531
MS_Paragon_confidence
Paragon:confidence: The Paragon result 'Confidence'.
Definition cv.hpp:3960
MS_Gel_image_file_URI
Gel image file URI: URI of one gel image file associated to one PX submission.
Definition cv.hpp:9003
MS_SIC_chromatogram
SIC chromatogram (selected ion current chromatogram): Chromatogram created by creating an array of th...
Definition cv.hpp:2553
MS_electromagnetic_radiation_chromatogram
electromagnetic radiation chromatogram: The measurement of electromagnetic properties as a function o...
Definition cv.hpp:3129
MS_param__y_ion_H2O_DEPRECATED
param: y ion-H2O DEPRECATED:
Definition cv.hpp:3915
MS_Thermo_RAW_format
Thermo RAW format: Thermo Scientific RAW file format.
Definition cv.hpp:2298
MS_product_ion_scan_OBSOLETE
product ion scan: The specific scan function or process that records product ion spectrum.
Definition cv.hpp:621
MS_ProteomeDiscoverer_Number_of_Spectra_Processed_At_Once
ProteomeDiscoverer:Number of Spectra Processed At Once: Number of spectra processed at once in a Prot...
Definition cv.hpp:8160
MS_Morpheus
Morpheus: Morpheus search engine.
Definition cv.hpp:8442
MS_Byonic
Byonic: Byonic search engine from Protein Metrics.
Definition cv.hpp:7230
MS_TOPP_PrecursorMassCorrector
TOPP PrecursorMassCorrector: Correct the precursor entries of tandem MS scans.
Definition cv.hpp:6927
MS_data_processing
data processing (data transformation): Terms used to describe types of data processing.
Definition cv.hpp:1947
MS_proline_endopeptidase
proline endopeptidase: Enzyme proline endopeptidase (EC 3.4.21.26).
Definition cv.hpp:6162
MS_Phenyx_Trust_Parent_Charge
Phenyx:Trust Parent Charge: The parameter in Phenyx that specifies if the experimental charge state i...
Definition cv.hpp:4542
UO_purity_percentage
purity percentage: A dimensionless percent unit which denotes the homogeneity of a biomaterial.
Definition cv.hpp:14376
MS_Mascot_Integra
Mascot Integra: Mascot Integra.
Definition cv.hpp:4872
MS_ProteomeDiscoverer_SEQUEST_Std_High_Confidence_XCorr_Charge3
ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge3: Standard high confidence XCorr paramete...
Definition cv.hpp:5532
MS_iodoTMT_quantitation_analysis
iodoTMT quantitation analysis: Quantitation analysis using the Thermo Fisher sulfhydryl-reactive iodo...
Definition cv.hpp:8688
MS_protein_group_list_attribute
protein group list attribute: Attribute describing a protein group list.
Definition cv.hpp:6783
UNIMOD_Hex_7_HexNAc_2_Phos_1_
Hex(7)HexNAc(2)Phos(1): Hex(7) HexNAc(2) Phos.
Definition cv.hpp:12555
MS_fraction_identifier
fraction identifier: Identier string that describes the sample fraction. This identifier should conta...
Definition cv.hpp:3270
UNIMOD_NEM_2H_5__H2O
NEM:2H(5)+H2O: D5 N-ethylmaleimide+water on cysteines.
Definition cv.hpp:12213
UNIMOD_Label_13C_4_
Label:13C(4): 13C4 Methionine label.
Definition cv.hpp:12045
MS_Synapt_G2_HDMS
Synapt G2 HDMS: Waters oa-ToF based Synapt G2 HDMS.
Definition cv.hpp:5745
PEFF_NumberOfEntries
NumberOfEntries: Number of sequence entries in the database.
Definition cv.hpp:150
MS_retention_time_normalization_standard
retention time normalization standard: A standard providing the retention times at which a set of ref...
Definition cv.hpp:3408
UO_terabyte
terabyte: An information unit which is equal to 1000 gigabytes.
Definition cv.hpp:14793
PEFF_Crc64
Crc64: Sequence checksum in crc64.
Definition cv.hpp:246
MS_TOPP_FeatureFinderRaw
TOPP FeatureFinderRaw: Detects two-dimensional features in uncentroided LC-MS data.
Definition cv.hpp:6948
MS_source_sprayer_manufacturer
source sprayer manufacturer: The source sprayer manufacturer.
Definition cv.hpp:6225
UO_millimetres_of_mercury
millimetres of mercury: A unit of pressure equal to the amount of fluid pressure one millimeter deep ...
Definition cv.hpp:14613
MS_DiART_reagent_119
DiART reagent 119: The name of the sample labelled with the DiART reagent 119.
Definition cv.hpp:8751
MS_ProteinExtractor_input_parameter
ProteinExtractor input parameter: Search engine input parameters specific to ProteinExtractor.
Definition cv.hpp:6744
MS_reflectron_state
reflectron state: Status of the reflectron, turned on or off.
Definition cv.hpp:324
UNIMOD_Cys__Xle
Cys->Xle: Cys->Leu/Ile substitution.
Definition cv.hpp:11433
MS_ProteomeXchange_accession_number_version_number
ProteomeXchange accession number version number: Version number of a ProteomeXchange accession number...
Definition cv.hpp:6180
UNIMOD_Cys__Pro
Cys->Pro: Cys->Pro substitution.
Definition cv.hpp:11445
UNIMOD_HNE_Delta_H_2_O
HNE-Delta:H(2)O: Dehydrated 4-hydroxynonenal.
Definition cv.hpp:10830
MS_GCT_Premier
GCT Premier: Waters oa-ToF based GCT Premier.
Definition cv.hpp:5724
MS_mzTab
mzTab: Tabular result format for proteomics and metabolomics experiments.
Definition cv.hpp:8256
MS_PIA
PIA: PIA - Protein Inference Algorithms, a toolbox for protein inference and identification analysis.
Definition cv.hpp:7611
MS_spectrum_title_OBSOLETE
spectrum title: OBSOLETE: replaced by MS:1000796 (spectrum title): Holds the spectrum title from diff...
Definition cv.hpp:4647
MS_staphylococcal_protease
staphylococcal protease (glutamyl endopeptidase): Enzyme glutamyl endopeptidase (EC 3....
Definition cv.hpp:6168
UNIMOD_Cys__His
Cys->His: Cys->His substitution.
Definition cv.hpp:11430
MS_SpectrumMill_directories
SpectrumMill directories: Source file for this mzIdentML was in Agilent SpectrumMill directory format...
Definition cv.hpp:5100
UNIMOD_Phospho
Phospho: Phosphorylation.
Definition cv.hpp:9417
UNIMOD_ZGB
ZGB: NHS ester linked Green Fluorescent Bodipy Dye.
Definition cv.hpp:11019
MS_param__immonium_ion
param: immonium ion: Parameter information, type of product: immonium ion.
Definition cv.hpp:4203
MS_ProteomeDiscoverer_Target_FDR_Relaxed
ProteomeDiscoverer:Target FDR Relaxed: Specifies the relaxed target false discovery rate (FDR,...
Definition cv.hpp:5403
UNIMOD_Glu__Phe
Glu->Phe: Glu->Phe substitution.
Definition cv.hpp:11493
UNIMOD_Hex_7_Phos_3_
Hex(7)Phos(3): Hex(7) Phos(3).
Definition cv.hpp:13128
MS_peptide_unique_to_one_protein
peptide unique to one protein: A peptide matching only one.
Definition cv.hpp:4497
MS_scan_m_z_range__OBSOLETE
scan m/z range?: The limit of m/z over which a mass spectrometer can detect ions.
Definition cv.hpp:1500
UNIMOD_dHex_1_Hex_1_HexNAc_1_Kdn_1_
dHex(1)Hex(1)HexNAc(1)Kdn(1): DHex Hex HexNAc Kdn —OR— Hex(2) dHex NeuAc.
Definition cv.hpp:12819
UNIMOD_Thiophos_S_S_biotin
Thiophos-S-S-biotin: Thiophosphate labeled with biotin-HPDP.
Definition cv.hpp:9966
MS_Th_s
Th/s: Unit describing the scan rate of a spectrum in Thomson per second.
Definition cv.hpp:3117
MS_cross_linking_attribute
cross-linking attribute: Cross-linking attribute.
Definition cv.hpp:7974
UNIMOD_Pro__Asp
Pro->Asp: Pro->Asp substitution.
Definition cv.hpp:11754
MS_result_list_attribute
result list attribute: General property of an entire result list.
Definition cv.hpp:8553
MS_search_tolerance_specification
search tolerance specification: Specification of the search tolerance.
Definition cv.hpp:4632
MS_search_database_details
search database details: Details about the database searched.
Definition cv.hpp:3531
MS_IE_OBSOLETE
IE (ionization energy): The minimum energy required to remove an electron from an atom or molecule to...
Definition cv.hpp:1047
MS_TOPP_SpectraMerger
TOPP SpectraMerger: Merges spectra from an LC/MS map, either by precursor or by RT blocks.
Definition cv.hpp:6918
UNIMOD_Ammonia_loss
Ammonia-loss: Loss of ammonia.
Definition cv.hpp:10080
UO_degree
degree: A plane angle unit which is equal to 1/360 of a full rotation or 1.7453310^[-2] rad.
Definition cv.hpp:14352
MS_LipidHunter
LipidHunter: Software for identification of phospholipids by high-throughput processing of LC-MS and ...
Definition cv.hpp:9324
UNIMOD_Lys__Ala
Lys->Ala: Lys->Ala substitution.
Definition cv.hpp:11646
MS_Shimadzu_Scientific_Instruments_instrument_model
Shimadzu Scientific Instruments instrument model: Shimadzu Scientific Instruments instrument model.
Definition cv.hpp:2469
PEFF_TaxName
TaxName: Taxonomy name (latin or common name).
Definition cv.hpp:186
MS_simple_ratio_of_two_values
simple ratio of two values: Simple ratio of two values (enumerator and denominator).
Definition cv.hpp:5958
UNIMOD_Hex_7_HexNAc_1_
Hex(7)HexNAc(1): Hex(7) HexNAc.
Definition cv.hpp:12465
MS_MS1_spectrum
MS1 spectrum: Mass spectrum created by a single-stage MS experiment or the first stage of a multi-sta...
Definition cv.hpp:2349
UNIMOD_Hex_5_HexNAc_2_
Hex(5)HexNAc(2): N-linked glycan core.
Definition cv.hpp:9639
MS_ProteomeDiscoverer_Non_Fragment_Filter_Mass_Window_Offset
ProteomeDiscoverer:Non-Fragment Filter:Mass Window Offset: Specifies the size of the mass-to-charge r...
Definition cv.hpp:5280
UNIMOD_His__Gln
His->Gln: His->Gln substitution.
Definition cv.hpp:10521
MS_ProteomeDiscoverer_SEQUEST_Std_High_Confidence_XCorr_Charge1
ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge1: Standard high confidence XCorr paramete...
Definition cv.hpp:5526
MS_tolerance_on_types_OBSOLETE
tolerance on types: OBSOLETE: Tolerance on types.
Definition cv.hpp:3654
UNIMOD_ICAT_G_2H_8_
ICAT-G:2H(8): Gygi ICAT(TM) d8.
Definition cv.hpp:9396
UNIMOD_Biotin_Thermo_33033_H
Biotin:Thermo-33033-H: Sulfo-SBED Label Photoreactive Biotin Crosslinker minus Hydrogen.
Definition cv.hpp:12009
MS_HCD
HCD (beam-type collision-induced dissociation): A collision-induced dissociation process that occurs ...
Definition cv.hpp:1842
PEFF_SpecificKey
SpecificKey: Db specific information (not included in the current list of allowed keys).
Definition cv.hpp:159
MS_TOPP_IDMerger
TOPP IDMerger: Merges several protein/peptide identification files into one file.
Definition cv.hpp:6912
MS_Agilent_software
Agilent software: Agilent software for data acquisition and analysis.
Definition cv.hpp:2736
MS_measurement_method
measurement method: An attribute of resolution when recording the detector response in absence of the...
Definition cv.hpp:2442
MS_Percolator_input_parameter
Percolator input parameter: Search engine input parameters specific to Percolator.
Definition cv.hpp:6768
UNIMOD_Hex_4_HexNAc_3_NeuGc_1_
Hex(4)HexNAc(3)NeuGc(1): Hex(4) HexNAc(3) NeuGc.
Definition cv.hpp:12534
MS_file_format_conversion
file format conversion: Conversion of one file format to another.
Definition cv.hpp:2196
MS_mass_analyzer
mass analyzer: Terms used to describe the Analyzer.
Definition cv.hpp:1938
MS_PinPoint
PinPoint: Thermo Scientific PinPoint SRM analysis software.
Definition cv.hpp:6150
MS_non_identified_ion
non-identified ion: Non-identified ion.
Definition cv.hpp:4152
MS_adduct_ion_mass
adduct ion mass: Mass of an adduct formation specified by the given value.
Definition cv.hpp:8850
UNIMOD_dHex_1_Hex_5_HexNAc_3_NeuAc_1_Sulf_1_
dHex(1)Hex(5)HexNAc(3)NeuAc(1)Sulf(1): DHex Hex(5) HexNAc(3) NeuAc Sulf.
Definition cv.hpp:12729
MS_Phenyx_Scoring_Model
Phenyx:Scoring Model: The selected scoring model in Phenyx.
Definition cv.hpp:4536
MS_positive_mode_adduct_ion
positive mode adduct ion: Adduct ion with positive ionization.
Definition cv.hpp:8841
MS_____K_
(?<=K): Regular expression for Lys-C/P.
Definition cv.hpp:4416
UO_fraction
fraction: A dimensionless ratio unit which relates the part (the numerator) to the whole (the denomin...
Definition cv.hpp:14370
UNIMOD_dHex_3_Hex_2_HexNAc_3_Kdn_1_
dHex(3)Hex(2)HexNAc(3)Kdn(1): DHex(3) Hex(2) HexNAc(3) Kdn —OR— Hex(3) HexNAc(2) dHex(3) NeuAc.
Definition cv.hpp:13248
MS_MaxQuant_feature_intensity
MaxQuant:feature intensity: The data type feature intensity produced by MaxQuant.
Definition cv.hpp:6123
MS_MaxQuant_Phospho__STY__Score_Diffs
MaxQuant:Phospho (STY) Score Diffs: The Phospho (STY) Score Diffs from MaxQuant software.
Definition cv.hpp:6372
MS_SID
SID (surface-induced dissociation): Fragmentation that results from the collision of an ion with a su...
Definition cv.hpp:774
MS_TMT_reagent_128C
TMT reagent 128C: The name of the sample labelled with the TMT reagent 128C.
Definition cv.hpp:8718
UO_mass_per_unit_volume
mass per unit volume: A concentration unit which is a standard measure of the mass of a substance in ...
Definition cv.hpp:14337
UO_degree_Celsius
degree Celsius: A temperature unit which is equal to one kelvin degree. However, they have their zero...
Definition cv.hpp:13884
MS_ProteomeDiscoverer_SEQUEST_FT_Medium_Confidence_XCorr_Charge4
ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge4: FT medium confidence XCorr parameter f...
Definition cv.hpp:5571
MS_ProteinExtractor_GenerateNonRedundant
ProteinExtractor:GenerateNonRedundant: Flag indicating if a non redundant scoring should be generated...
Definition cv.hpp:4674
MS_WIFF_nativeID_format
WIFF nativeID format: Native format defined by sample=xsd:nonNegativeInteger period=xsd:nonNegativeIn...
Definition cv.hpp:2982
UNIMOD_FAD
FAD: Flavin adenine dinucleotide.
Definition cv.hpp:9492
UO_milligram_per_milliliter
milligram per milliliter: A mass unit density which is equal to mass of an object in milligrams divid...
Definition cv.hpp:14325
MS_protein_value__mean_of_peptide_ratios
protein value: mean of peptide ratios: Protein quantification value calculated as mean of peptide rat...
Definition cv.hpp:5994
UNIMOD_Hex_1_HexNAc_2_dHex_2_
Hex(1)HexNAc(2)dHex(2): Hex1HexNAc2dHex2.
Definition cv.hpp:9693
UNIMOD_dHex_1_Hex_4_HexA_1_HexNAc_3_Sulf_1_
dHex(1)Hex(4)HexA(1)HexNAc(3)Sulf(1): DHex Hex(4) HexA HexNAc(3) Sulf.
Definition cv.hpp:13257
MS_MaxQuant_peptide_counts__all_
MaxQuant:peptide counts (all): The data type peptide counts (all) produced by MaxQuant.
Definition cv.hpp:6108
UNIMOD_Cation_Mg_II_
Cation:Mg[II]: Replacement of 2 protons by magnesium.
Definition cv.hpp:11205
MS_PIA_filter
PIA:filter: A filter used for the report generation.
Definition cv.hpp:7650
UNIMOD_GluGluGlu
GluGluGlu: Triglutamyl.
Definition cv.hpp:10254
MS_IRMS_OBSOLETE
IRMS (isotope ratio mass spectrometry): The measurement of the relative quantity of the different iso...
Definition cv.hpp:1275
MS_EMR_spectrum
EMR spectrum (electromagnetic radiation spectrum): A plot of the relative intensity of electromagneti...
Definition cv.hpp:3108
MS_FDRScore_OBSOLETE
FDRScore: A smoothing of the distribution of q-values calculated for PSMs from individual search engi...
Definition cv.hpp:6036
UNIMOD_NEMsulfur
NEMsulfur: N-ethylmaleimideSulfur.
Definition cv.hpp:12168
MS_API_3200
API 3200: SCIEX or Applied Biosystems|MDS SCIEX API 3200 MS.
Definition cv.hpp:2631
MS_multiphoton_dissociation
multiphoton dissociation (photodissociation): A process wherein the reactant ion is dissociated as a ...
Definition cv.hpp:1884
MS_product_ion_intensity_standard_deviation
product ion intensity standard deviation: Standard deviation of product ion intensity in a collection...
Definition cv.hpp:7125
MS_protonated_molecule_OBSOLETE
protonated molecule: An ion formed by interaction of a neutral molecule with a proton and represented...
Definition cv.hpp:1698
MS_decoy_DB_from_UniProtKB_TrEMBL_OBSOLETE
decoy DB from UniProtKB/TrEMBL: Decoy database from a TrEMBL protein sequence database.
Definition cv.hpp:6633
MS_quality_estimation_method_details
quality estimation method details: Method for quality estimation (manually or with decoy database).
Definition cv.hpp:3663
UNIMOD_dHex_1_Hex_5_
dHex(1)Hex(5): Hex5dHex1.
Definition cv.hpp:12249
MS_ProteomeDiscoverer_SEQUEST_Weight_of_a_Ions
ProteomeDiscoverer:SEQUEST:Weight of a Ions: Uses a ions for spectrum matching with this relative fac...
Definition cv.hpp:5478
UNIMOD_Cation_Fe_II_
Cation:Fe[II]: Replacement of 2 protons by iron.
Definition cv.hpp:11193
MS_Paragon_expression_error_factor
Paragon:expression error factor: The Paragon result 'Expression Error Factor'.
Definition cv.hpp:3963
UNIMOD_DNPS
DNPS: 2,4-Dinitrobenzenesulfenyl.
Definition cv.hpp:11163
UNIMOD_Nmethylmaleimide
Nmethylmaleimide: Nmethylmaleimide.
Definition cv.hpp:9933
MS_ESA
ESA (electrostatic energy analyzer): A device consisting of conducting parallel plates,...
Definition cv.hpp:1221
UO_foot
foot: A length unit which is equal to 0.3048 metres, or 12 inches.
Definition cv.hpp:14832
MS_NG_5400
NG-5400: Waters NG-5400 MS.
Definition cv.hpp:906
MS_proteoform_level_local_FDR
proteoform-level local FDR: Estimation of the local false discovery rate of proteoforms.
Definition cv.hpp:9147
MS_MSQuant_PTM_score
MSQuant:PTM-score: The PTM score from MSQuant software.
Definition cv.hpp:6363
MS_Phenyx
Phenyx: The name of the Phenyx search engine.
Definition cv.hpp:4056
MS_co_eluting_ion
co-eluting ion: Co-eluting ion.
Definition cv.hpp:4155
MS_ProteomeDiscoverer_input_parameter
ProteomeDiscoverer input parameter: Search engine input parameters specific to ProteomeDiscoverer.
Definition cv.hpp:6753
UNIMOD_Methyl_Deamidated
Methyl+Deamidated: Deamidation followed by a methylation.
Definition cv.hpp:10362
UNIMOD_NeuGc
NeuGc: N-glycoyl neuraminic acid.
Definition cv.hpp:12126
MS_H_Score
H-Score: H-Score for peptide phosphorylation site location.
Definition cv.hpp:6387
MS_Dataset_with_no_associated_published_manuscript
Dataset with no associated published manuscript: A dataset which does not have an associated publishe...
Definition cv.hpp:8982
PEFF_PName
PName: Protein Name, description.
Definition cv.hpp:180
MS_accelerating_voltage
accelerating voltage: The electrical potential used to impart kinetic energy to ions in a mass spectr...
Definition cv.hpp:1473
UNIMOD_His__Val
His->Val: His->Val substitution.
Definition cv.hpp:11622
MS_Comet_total_ions
Comet:total ions: The Comet result 'Total Ions'.
Definition cv.hpp:7224
UNIMOD_Val__Ala
Val->Ala: Val->Ala substitution.
Definition cv.hpp:10755
MS_MSPathFinder_EValue
MSPathFinder:EValue: MSPathFinder E-value.
Definition cv.hpp:8586
MS_experimental_condition__control_
experimental condition 'control': The experimental condition is 'control' in contrast to 'case'.
Definition cv.hpp:5847
UO_density_unit
density unit: A unit which is a standard measure of the influence exerted by some mass.
Definition cv.hpp:14343
MS_linked_scan_at_constant_b_e_OBSOLETE
linked scan at constant b/e: A linked scan at constant B/E may be performed on a sector mass spectrom...
Definition cv.hpp:1560
MS_DeBunker
DeBunker: DeBunker software.
Definition cv.hpp:6342
MS_TMT_reagent_126
TMT reagent 126: The name of the sample labelled with the TMT reagent 126.
Definition cv.hpp:8301
UNIMOD_Hex_2_NeuAc_1_
Hex(2)NeuAc(1): Hex(2) NeuAc —OR— Hex HexNAc Kdn.
Definition cv.hpp:12417
UO_weber
weber: A magnetic flux unit which is equal to the amount of flux that when linked with a single turn ...
Definition cv.hpp:14475
MS_ICAT_heavy_reagent
ICAT heavy reagent: The name of the sample labelled with the heavy ICAT label.
Definition cv.hpp:8265
UNIMOD_Lys__Arg
Lys->Arg: Lys->Arg substitution.
Definition cv.hpp:10554
MS_Triple_Quad_3500
Triple Quad 3500: SCIEX Triple Quad 3500.
Definition cv.hpp:8226
MS_inlet_temperature
inlet temperature: The temperature of the inlet of a mass spectrometer.
Definition cv.hpp:6567
UO_zetta
zetta: A prefix in the metric system denoting a factor of ten to the power of 21.
Definition cv.hpp:14661
MS_consecutive_reaction_monitoring_OBSOLETE_1000327
consecutive reaction monitoring: A type of MS2 experiments with three or more stages of m/z separatio...
Definition cv.hpp:1551
MS_QSTAR_Elite
QSTAR Elite: SCIEX or Applied Biosystems|MDS SCIEX QSTAR Elite.
Definition cv.hpp:2637
MS_no_compression
no compression: No Compression.
Definition cv.hpp:2337
MS_product_background
product background: The background area for the quantified transition.
Definition cv.hpp:7689
MS_SRM_spectrum
SRM spectrum: Spectrum obtained when data are acquired from specific product ions corresponding to m/...
Definition cv.hpp:2391
MS_electric_field_strength
electric field strength: The magnitude of the force per unit charge at a given point in space.
Definition cv.hpp:1485
MS_BaselineFilter
BaselineFilter: Removes the baseline from profile spectra using a top-hat filter.
Definition cv.hpp:2928
MS_SCIEX_TOF_TOF_T2D_format
SCIEX TOF/TOF T2D format: Applied Biosystems/MDS Analytical Technologies TOF/TOF instrument export fo...
Definition cv.hpp:5079
UNIMOD_dHex_1_Hex_5_HexNAc_4_Sulf_1_
dHex(1)Hex(5)HexNAc(4)Sulf(1): DHex Hex(5) HexNAc(4) Sulf.
Definition cv.hpp:12666
MS_WIFF_nativeID_format__combined_spectra
WIFF nativeID format, combined spectra: WIFF comma separated list of spectra that have been combined ...
Definition cv.hpp:8406
UNIMOD_Butyryl
Butyryl: Butyryl.
Definition cv.hpp:12087
MS_neutral_loss_OBSOLETE
neutral loss: OBSOLETE: replaced by MS:1000336 (neutral loss): Leave this to PSI-MOD.
Definition cv.hpp:3666
MS_iTRAQ_reagent_114
iTRAQ reagent 114: The name of the sample labelled with the iTRAQ reagent 114.
Definition cv.hpp:8325
MS_Bruker_TDF_nativeID_format
Bruker TDF nativeID format: Native format defined by frame=xsd:nonNegativeInteger scan=xsd:nonNegativ...
Definition cv.hpp:8877
MS_error_on_absolute_quantity
error on absolute quantity: Error on absolute quantity.
Definition cv.hpp:3873
MS_ProteomeDiscoverer_Residue_substitution_list
ProteomeDiscoverer:Residue substitution list: Residues considered equivalent when comparing peptides.
Definition cv.hpp:5622
PEFF_ID
ID: UniProtKB specific Protein identifier ID; a UniProtKB term.
Definition cv.hpp:252
UNIMOD_Hex_2_HexNAc_3_NeuAc_1_Sulf_1_
Hex(2)HexNAc(3)NeuAc(1)Sulf(1): Hex(2) HexNAc(3) NeuAc Sulf.
Definition cv.hpp:13092
PEFF_PEFF_CV_term
PEFF CV term: PSI Extended FASTA Format Controlled Vocabulary term.
Definition cv.hpp:120
MS_electron_capture_dissociation
electron capture dissociation: A process in which a multiply protonated molecules interacts with a lo...
Definition cv.hpp:1194
MS_TMT_reagent_129C
TMT reagent 129C: The name of the sample labelled with the TMT reagent 129C.
Definition cv.hpp:8724
MS_lab_head
lab head: The scientist responsible for personnel, grants, and instrumentation in a functional labora...
Definition cv.hpp:7446
UNIMOD_Delta_H_4_C_3_O_1_
Delta:H(4)C(3)O(1): Acrolein addition +56.
Definition cv.hpp:9771
MS_Paragon__FDR_analysis
Paragon: FDR analysis: The Paragon method setting that controls whether FDR analysis is conducted.
Definition cv.hpp:7731
MS_MS1_format
MS1 format: MS1 file format for MS1 spectral data.
Definition cv.hpp:8244
MS_TargetAnalysis
TargetAnalysis: Bruker TargetAnalysis software.
Definition cv.hpp:2883
UNIMOD_TMPP_Ac_13C_9_
TMPP-Ac:13C(9): Heavy tris(2,4,6-trimethoxyphenyl)phosphonium acetic acid N-hydroxysuccinimide ester ...
Definition cv.hpp:13800
UNIMOD_PhosphoHexNAc
PhosphoHexNAc: N-acetylglucosamine-1-phosphoryl.
Definition cv.hpp:10191
MS_MS_GF_PepQValue
MS-GF:PepQValue: MS-GF peptide-level Q-value.
Definition cv.hpp:6615
UNIMOD_Biotin_Thermo_21345
Biotin:Thermo-21345: Was PentylamineBiotin.
Definition cv.hpp:10959
MS_distinct_peptide_level_q_value
distinct peptide-level q-value: Estimation of the q-value for distinct peptides once redundant identi...
Definition cv.hpp:6018
MS_Dionex_instrument_model
Dionex instrument model: Dionex instrument model.
Definition cv.hpp:2073
UNIMOD_Cys__Ser
Cys->Ser: Cys->Ser substitution.
Definition cv.hpp:10422
MS_Mascot_SigThresholdType
Mascot:SigThresholdType: Significance threshold type used in Mascot reporting (either 'identity' or '...
Definition cv.hpp:5688
MS_electrospray_inlet
electrospray inlet: Inlet used for introducing the liquid sample into an electrospray ionization sour...
Definition cv.hpp:450
MS_OMSSA_e_value_threshold
OMSSA e-value threshold: Threshold for OMSSA e-value for quality estimation.
Definition cv.hpp:4746
UNIMOD_PyridoxalPhosphateH2
PyridoxalPhosphateH2: PLP bound to lysine reduced by sodium borohydride (NaBH4) to create amine linka...
Definition cv.hpp:12264
MS_FT_ICR
FT_ICR (fourier transform ion cyclotron resonance mass spectrometer): A mass spectrometer based on th...
Definition cv.hpp:537
UNIMOD_DiLeu4plex115
DiLeu4plex115: Accurate mass for DiLeu 115 isobaric tag.
Definition cv.hpp:12156
MS_area_normalization
area normalization: Normalization of areas below the curves.
Definition cv.hpp:6429
MS_ProLuCID
ProLuCID: The SEQUEST-like sequence search engine ProLuCID, developed in the Yates Lab at the Scripps...
Definition cv.hpp:8241
MS_MS_Numpress_short_logged_float_compression
MS-Numpress short logged float compression: Compression using MS-Numpress short logged float compress...
Definition cv.hpp:7392
MS_MS1_label_based_peptide_level_quantitation
MS1 label-based peptide level quantitation: MS1 label-based peptide level quantitation.
Definition cv.hpp:6438
MS_mzIdentML_format
mzIdentML format: The mzIdentML format for peptide and protein identification data from the PSI....
Definition cv.hpp:6669
UO_perch
perch: An area unit which is equal to an area of 25.292,852,64 square meters, or 1 square rod.
Definition cv.hpp:14862
UNIMOD_Hex_3_HexNAc_2_NeuAc_1_
Hex(3)HexNAc(2)NeuAc(1): Hex(3) HexNAc(2) NeuAc.
Definition cv.hpp:12450
MS_Proteinscape_spectra
Proteinscape spectra: Spectra from Bruker/Protagen Proteinscape database.
Definition cv.hpp:4986
MS_Discoverer_MSF_format
Discoverer MSF format: Source file for this mzIdentML was in Thermo Scientific Discoverer MSF format.
Definition cv.hpp:5091
MS_average_mass_OBSOLETE
average mass: The mass of an ion or molecule calculated using the average mass of each element weight...
Definition cv.hpp:999
MS_Phenyx_Modif
Phenyx:Modif: The expression of the nature and position(s) of modified residue(s) on a matched peptid...
Definition cv.hpp:4602
UNIMOD_Methyl_2H_2_
Methyl:2H(2): Deuterium Methylation of Lysine.
Definition cv.hpp:9861
MS______KR_____P_
(?<=[KR])(?!P): Regular expression for Trypsin.
Definition cv.hpp:3987
MS_GC_IsoLink
GC IsoLink: Thermo Scientific GC IsoLink Isotope Ratio MS.
Definition cv.hpp:2616
UNIMOD_PET
PET: Phosphorylation to pyridyl thiol.
Definition cv.hpp:9825
UO_volt
volt: An electric potential difference unit which is equal to the work per unit charge....
Definition cv.hpp:14451
UNIMOD_Deamidated_18O_1_
Deamidated:18O(1): Deamidation in presence of O18.
Definition cv.hpp:10038
UNIMOD_Ala__Arg
Ala->Arg: Ala->Arg substitution.
Definition cv.hpp:11412
MS_SEQUEST_sort_by_Scan
SEQUEST:sort by Scan: Sort order of SEQUEST search results given by the scan number.
Definition cv.hpp:3684
UNIMOD_Hex_3_HexNAc_2_Pent_1_
Hex(3)HexNAc(2)Pent(1): Hex(3) HexNAc(2) Pent.
Definition cv.hpp:12438
UO_disintegrations_per_second
disintegrations per second: An activity (of a radionuclide) unit which is equal to the activity of a ...
Definition cv.hpp:14445
MS_PepFinder
PepFinder: Thermo Scientific PepFinder BioPharma analysis software.
Definition cv.hpp:8022
UNIMOD_iTRAQ8plex
iTRAQ8plex: Representative mass and accurate mass for 113, 114, 116 & 117.
Definition cv.hpp:10857
UNIMOD_Hex_1_HexNAc_3_NeuAc_1_
Hex(1)HexNAc(3)NeuAc(1): Hex HexNAc(3) NeuAc.
Definition cv.hpp:12969
MS_intermediate_PSM_list
intermediate PSM list: A flag on a list of PSMs (SpectrumIdentificationList) to indicate that this is...
Definition cv.hpp:7770
UNIMOD_NHS_fluorescein
NHS-fluorescein: Fluorescein-hexanoate-NHS hydrolysis.
Definition cv.hpp:12285
UNIMOD_Glu__Met
Glu->Met: Glu->Met substitution.
Definition cv.hpp:11502
UNIMOD_Hex_1_HexNAc_2_NeuAc_2_
Hex(1)HexNAc(2)NeuAc(2): Hex HexNAc(2) NeuAc(2).
Definition cv.hpp:13008
MS_ProteomeDiscoverer_Mascot_Weight_of_A_Ions
ProteomeDiscoverer:Mascot:Weight of A Ions: Determines if to use A ions for spectrum matching.
Definition cv.hpp:5643
MS_Percolator_Validation_based_on
Percolator:Validation based on: Algorithm (e.g. q-value or PEP) used for calculation of the validatio...
Definition cv.hpp:6726
UNIMOD_Hex_2_HexNAc_2_dHex_1_
Hex(2)HexNAc(2)dHex(1): Hex2HexNAc2dHex1.
Definition cv.hpp:9699
UO_pascal_second
pascal second: A viscosity unit which is equal to one pascale per second.
Definition cv.hpp:14568
MS_PEAKS_Node
PEAKS Node: PEAKS Node software for high throughput data analysis.
Definition cv.hpp:6267
UNIMOD_dHex_1_Hex_2_HexNAc_3_NeuAc_1_Sulf_1_
dHex(1)Hex(2)HexNAc(3)NeuAc(1)Sulf(1): DHex Hex(2) HexNAc(3) NeuAc Sulf.
Definition cv.hpp:13176
MS_iTRAQ_reagent
iTRAQ reagent: Isobaric tag for relative and absolute quantitation (iTRAQ or iTRAQH) reagent.
Definition cv.hpp:8319
MS_MPD
MPD (photodissociation): A process wherein the reactant ion is dissociated as a result of absorption ...
Definition cv.hpp:1887
MS_MS_GF_EValue
MS-GF:EValue: MS-GF E-value.
Definition cv.hpp:6609
UNIMOD_Lys__Thr
Lys->Thr: Lys->Thr substitution.
Definition cv.hpp:10539
MS_ProteomeDiscoverer_Max_Precursor_Mass
ProteomeDiscoverer:Max Precursor Mass: Maximum mass limit of a singly charged precursor ion.
Definition cv.hpp:5235
MS_Waters_software
Waters software: Waters software for data acquisition and analysis.
Definition cv.hpp:2751
MS_ProteomeDiscoverer_Mascot_Significance_Middle
ProteomeDiscoverer:Mascot:Significance Middle: Calculated relaxed significance when performing a deco...
Definition cv.hpp:7134
UO_concentration_unit
concentration unit: A unit which represents a standard measurement of how much of a given substance t...
Definition cv.hpp:13956
MS_combined_FDRScore_OBSOLETE
combined FDRScore: FDRScore values specifically obtained for distinct combinations of single,...
Definition cv.hpp:6822
UNIMOD_dHex_2_Hex_2_HexNAc_2_NeuAc_1_Sulf_1_
dHex(2)Hex(2)HexNAc(2)NeuAc(1)Sulf(1): DHex(2) Hex(2) HexNAc(2) NeuAc Sulf.
Definition cv.hpp:13143
MS_energy_unit_OBSOLETE
energy unit: Energy units are represented in either eV or Joules.
Definition cv.hpp:414
MS_Single_Stage_Mass_Spectrometry
Single-Stage Mass Spectrometry (MS1 spectrum): Mass spectrum created by a single-stage MS experiment ...
Definition cv.hpp:2361
MS_ACQUITY_UPLC_I_Class
ACQUITY UPLC I-Class: Waters LC-system ACQUITY UPLC I-Class.
Definition cv.hpp:5706
MS_SEQUEST_sort_by_dCn
SEQUEST:sort by dCn: Sort order of SEQUEST search results by the delta of the normalized correlation ...
Definition cv.hpp:3624
MS_FlexAnalysis
FlexAnalysis: Bruker software for data analysis.
Definition cv.hpp:2211
UNIMOD_Xle__Phe
Xle->Phe: Leu/Ile->Phe substitution.
Definition cv.hpp:10563
MS_spectrum
spectrum: A mass spectrum is an intensity vs m/z (mass-to-charge ratio) plot representing a chemical ...
Definition cv.hpp:1908
UNIMOD_Pro__Gly
Pro->Gly: Pro->Gly substitution.
Definition cv.hpp:11763
UNIMOD_Cation_Fe_III_
Cation:Fe[III]: Replacement of 3 protons by iron.
Definition cv.hpp:13491
MS_associative_ionization
associative ionization: An ionization process in which two excited atoms or molecules react to form a...
Definition cv.hpp:1716
UNIMOD_Asn__Cys
Asn->Cys: Asn->Cys substitution.
Definition cv.hpp:11721
MS_Tide
Tide: Tide open-source sequence search program developed at the University of Washington.
Definition cv.hpp:8178
MS_identification_file_format
identification file format: Attribute describing an identification file format.
Definition cv.hpp:6837
MS_hybrid_mass_spectrometer_OBSOLETE
hybrid mass spectrometer: A mass spectrometer that combines m/z analyzers of different types to perfo...
Definition cv.hpp:1431
MS_DB_composition_target_decoy
DB composition target+decoy: Decoy database composition: database contains original (target) and deco...
Definition cv.hpp:4026
PEFF_Variant
Variant: DEPRECATED in favor of VariantSimple and VariantComplex. Former definition: Sequence variati...
Definition cv.hpp:207
UNIMOD_Trp__Gln
Trp->Gln: Trp->Gln substitution.
Definition cv.hpp:11952
MS_SEQUEST_sort_by_Sequence
SEQUEST:sort by Sequence: Sort order of SEQUEST search results given by the sequence.
Definition cv.hpp:3687
UNIMOD_Hex_1_HexNAc_1_dHex_1_Me_1_
Hex(1)HexNAc(1)dHex(1)Me(1): Hex HexNAc dHex Me.
Definition cv.hpp:12393
MS_Profound_z_value
Profound:z value: The Profound z value.
Definition cv.hpp:4899
UNIMOD_dHex_1_Hex_1_HexNAc_2_NeuAc_1_Sulf_1_
dHex(1)Hex(1)HexNAc(2)NeuAc(1)Sulf(1): DHex Hex HexNAc(2) NeuAc Sulf.
Definition cv.hpp:12978
UNIMOD_Triiodo
Triiodo: Tri-Iodination.
Definition cv.hpp:9627
UNIMOD_Thr__Arg
Thr->Arg: Thr->Arg substitution.
Definition cv.hpp:10749
MS_field_free_region
field-free region: A section of a mass spectrometer in which there are no electric or magnetic fields...
Definition cv.hpp:1032
MS_raw_file_attribute
raw file attribute: Attribute describing a raw file.
Definition cv.hpp:5865
UNIMOD_BITC
BITC: Benzyl isothiocyanate.
Definition cv.hpp:11238
MS_M_LDI_LR
M@LDI LR: Waters oa-ToF based MALDI LR.
Definition cv.hpp:879
MS_DiLeu_reagent_116
DiLeu reagent 116: The name of the sample labelled with the DiLeu reagent 116.
Definition cv.hpp:8760
MS_ProteinExtractor_PhenyxUniqueScore
ProteinExtractor:PhenyxUniqueScore: In the final result each protein must have at least one peptide a...
Definition cv.hpp:4734
MS_decoy_DB_from_nr_OBSOLETE
decoy DB from nr: Decoy database from a non-redundant GenBank sequence database.
Definition cv.hpp:4275
MS_SEQUEST_sort_by_dM
SEQUEST:sort by dM: Sort order of SEQUEST search results by the difference between a theoretically ca...
Definition cv.hpp:3627
UO_peta
peta: A prefix in the metric system denoting a factor of ten to the power of 15.
Definition cv.hpp:14667
MS_selected_ion_flow_tube
selected ion flow tube: A device in which m/z selected ions are entrained in an inert carrier gas and...
Definition cv.hpp:1383
MS_Bruker_Agilent_YEP_format
Bruker/Agilent YEP format: Bruker/Agilent YEP file format.
Definition cv.hpp:2310
UNIMOD_Lys_loss
Lys-loss: Loss of C-terminal K from Heavy Chain of MAb.
Definition cv.hpp:9930
UO_parts_per_trillion
parts per trillion: A dimensionless concentration notation which denotes the amount of a given substa...
Definition cv.hpp:14310
MS_Compass_for_micrOTOF
Compass for micrOTOF: Bruker Compass for micrOTOF software.
Definition cv.hpp:2811
UNIMOD_2_dimethylsuccinyl
2-dimethylsuccinyl: S-(2-dimethylsuccinyl) cysteine.
Definition cv.hpp:12036
UO_minute
minute: A time unit which is equal to 60 seconds.
Definition cv.hpp:13896
MS_ProteomeDiscoverer_SEQUEST_Std_Medium_Confidence_XCorr_Charge3
ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge3: Standard medium confidence XCorr para...
Definition cv.hpp:5544
MS_ProteinExtractor_PhenyxWeighting
ProteinExtractor:PhenyxWeighting: Influence of Phenyx search engine in the process of merging the sea...
Definition cv.hpp:4737
UNIMOD_Ethoxyformyl
Ethoxyformyl: Ethoxyformylation.
Definition cv.hpp:11121
MS_peptide_sequence_level_global_FNR
peptide sequence-level global FNR: Estimation of the global false negative rate for distinct peptides...
Definition cv.hpp:7836
UNIMOD_Gly__His
Gly->His: Gly->His substitution.
Definition cv.hpp:11568
MS_empirical_formula
empirical formula: A chemical formula which expresses the proportions of the elements present in a su...
Definition cv.hpp:3297
MS_Shimadzu_Biotech_nativeID_format
Shimadzu Biotech nativeID format: Native format defined by source=xsd:string start=xsd:nonNegativeInt...
Definition cv.hpp:3495
UNIMOD_Hex_2_Sulf_1_
Hex(2)Sulf(1): Hex(2) O(3) S.
Definition cv.hpp:13638
MS_SEQUEST_spscore
SEQUEST:spscore: The SEQUEST result 'SpScore'.
Definition cv.hpp:7191
MS_liquid_chromatography_separation
liquid chromatography separation: Liquid chromatography (LC) is a separation technique in which the m...
Definition cv.hpp:7260
UNIMOD_Label_13C_6_15N_1_
Label:13C(6)15N(1): 13C(6) 15N(1) Silac label.
Definition cv.hpp:10818
UNIMOD_Thr__Lys
Thr->Lys: Thr->Lys substitution.
Definition cv.hpp:10737
MS_ICAT_reagent
ICAT reagent: Isotope coded affinity tag reagent.
Definition cv.hpp:8262
MS_parent_mass_type_mono
parent mass type mono: Mass type setting for parent mass was monoisotopic.
Definition cv.hpp:4062
UNIMOD_Biotin_Thermo_88310
Biotin:Thermo-88310: Desthiobiotin modification of lysine.
Definition cv.hpp:11352
UO_speed_velocity_unit
speed/velocity unit: A unit which is a standard measure of the rate of movement. Speed is measured in...
Definition cv.hpp:13983
MS_NIST_MSPepSearch
NIST MSPepSearch: Search tool of the NIST (National Institute of Standards and Technology) for spectr...
Definition cv.hpp:8670
MS_Mascot_Instrument
Mascot:Instrument: Type of instrument used to acquire the data in the raw file.
Definition cv.hpp:5382
UNIMOD_Ser__Arg
Ser->Arg: Ser->Arg substitution.
Definition cv.hpp:10719
MS_ProteomeDiscoverer_Spectrum_Selector_Lower_RT_Limit
ProteomeDiscoverer:Spectrum Selector:Lower RT Limit: Lower retention-time limit.
Definition cv.hpp:5229
UO_luminous_flux_unit
luminous flux unit: A unit which is a standard measure of the flow of radiant energy.
Definition cv.hpp:14154
MS_image_current_detector
image current detector (inductive detector): Inductive detector.
Definition cv.hpp:2541
MS_highest_observed_m_z
highest observed m/z: Highest m/z value observed in the m/z array.
Definition cv.hpp:2187
UNIMOD_Hex_5_HexNAc_4_NeuAc_1_Ac_2_
Hex(5)HexNAc(4)NeuAc(1)Ac(2): Hex(5) HexNAc(4) NeuAc Ac(2).
Definition cv.hpp:13749
MS_proteoform_level_local_FDR_threshold
proteoform-level local FDR threshold: Threshold for the local false discovery rate of proteoforms.
Definition cv.hpp:9156
MS_ProteomeDiscoverer_Mascot_X_Static_Modification
ProteomeDiscoverer:Mascot:X Static Modification: Number of attempts to submit the Mascot search.
Definition cv.hpp:5367
MS_ProteomeDiscoverer_SEQUEST_Fragment_Ion_Cutoff_Percentage
ProteomeDiscoverer:SEQUEST:Fragment Ion Cutoff Percentage: Percentage of the theoretical ions that mu...
Definition cv.hpp:5427
MS_membrane_separator
membrane separator: A device to separate carrier molecules from analyte molecules on the basis of eas...
Definition cv.hpp:465
MS_proteoform_level_global_FDR_threshold
proteoform-level global FDR threshold: Threshold for the global false discovery rate of proteoforms.
Definition cv.hpp:9153
MS_SCIEX_instrument_model
SCIEX instrument model: The brand of instruments from the joint venture between Applied Biosystems an...
Definition cv.hpp:702
UNIMOD_Label_2H_7_15N_4_
Label:2H(7)15N(4): Label:2H(7)15N(4).
Definition cv.hpp:12315
MS_percolator_Q_value
percolator:Q value: Percolator:Q value.
Definition cv.hpp:4878
MS_standard_error
standard error: Standard error function.
Definition cv.hpp:9078
UNIMOD_LG_Hlactam_R
LG-Hlactam-R: Levuglandinyl - arginine hydroxylactam adduct.
Definition cv.hpp:10323
MS_peptide_sequence_level_global_confidence
peptide sequence-level global confidence: Estimation of the global confidence for distinct peptides o...
Definition cv.hpp:7839
MS_dilution_series__concentration_X
dilution series, concentration X: The experimental design followed a dilution series design....
Definition cv.hpp:5862
MS_standard
standard: Something, such as a practice or a product, that is widely recognized or employed,...
Definition cv.hpp:3399
MS_PIA_protein_inference_used_score
PIA:protein inference used score: The used base score for the protein inference using PIA.
Definition cv.hpp:7644
UNIMOD_dHex_1_Hex_3_HexNAc_4_
dHex(1)Hex(3)HexNAc(4): Fucosylated biantennary (-2 galactose).
Definition cv.hpp:9909
MS_tube_lens_voltage
tube lens voltage: Potential difference setting of the tube lens in volts.
Definition cv.hpp:3333
MS_PSM_level_result_list_attribute
PSM-level result list attribute: General property of the list of all PSMs.
Definition cv.hpp:8556
MS_ProteomeDiscoverer_Lowest_Charge_State
ProteomeDiscoverer:Lowest Charge State: Minimum charge state below which peptides are filtered out.
Definition cv.hpp:5337
UNIMOD_Hex_4_HexNAc_3_NeuAc_2_
Hex(4)HexNAc(3)NeuAc(2): Hex(4) HexNAc(3) NeuAc(2).
Definition cv.hpp:12657
MS_TOF_Total_Path_Length
TOF Total Path Length: The length of the field free drift space in a time of flight mass spectrometer...
Definition cv.hpp:327
UNIMOD_Thr__Gln
Thr->Gln: Thr->Gln substitution.
Definition cv.hpp:11880
MS_plasma_desorption_ionization
plasma desorption ionization: The ionization of material in a solid sample by bombarding it with ioni...
Definition cv.hpp:1773
MS_pyrolysis_mass_spectrometry
pyrolysis mass spectrometry: A mass spectrometry technique in which the sample is heated to the point...
Definition cv.hpp:1341
MS_assay_attribute
assay attribute: Attribute describing an assay.
Definition cv.hpp:6777
MS_scan_window_lower_limit
scan window lower limit: The upper m/z bound of a mass spectrometer scan window.
Definition cv.hpp:2109
MS_number_of_product_ion_observations
number of product ion observations: The number of times the specific product ion has been observed in...
Definition cv.hpp:7128
UNIMOD_Label_13C_5_15N_1_
Label:13C(5)15N(1): 13C(5) 15N(1) Silac label.
Definition cv.hpp:9831
MS_PIA_Combined_FDRScore_calculated
PIA:Combined FDRScore calculated: Indicates whether the combined FDR score was calculated for the PIA...
Definition cv.hpp:7623
UNIMOD_Xle__Arg
Xle->Arg: Leu/Ile->Arg substitution.
Definition cv.hpp:10584
UNIMOD_QEQTGG
QEQTGG: SUMOylation by SUMO-1.
Definition cv.hpp:11031
MS_local_FLR_at_threshold
local FLR at threshold: Local false localization rate for the bottom item in list of localizations so...
Definition cv.hpp:8535
UNIMOD_Hex_1_HexNAc_3_
Hex(1)HexNAc(3): Hex HexNAc(3).
Definition cv.hpp:12822
UNIMOD_BisANS
BisANS: 4,4\'-dianilino-1,1\'-binaphthyl-5,5\'-disulfonic acid.
Definition cv.hpp:10344
MS_time_unit_OBSOLETE
time unit: Time Unit.
Definition cv.hpp:2259
UNIMOD_Xle__Trp
Xle->Trp: Leu/Ile->Trp substitution.
Definition cv.hpp:10566
MS_OMSSA_csv_format
OMSSA csv format: Source file for this mzIdentML was in OMSSA csv file format.
Definition cv.hpp:4605
MS_Linked_Scan_at_Constant_B2_E_OBSOLETE
Linked Scan at Constant B2/E: A linked scan performed on a sector mass spectrometer that incorporates...
Definition cv.hpp:1566
UNIMOD_Trp__Met
Trp->Met: Trp->Met substitution.
Definition cv.hpp:11943
MS_METLIN
METLIN: Personal Metabolite Database for MassHunter Workstation. Software for identification of human...
Definition cv.hpp:2727
MS_ProteomeDiscoverer_Maximum_Peptides_Output
ProteomeDiscoverer:Maximum Peptides Output: Maximum number of peptide matches reported per spectrum.
Definition cv.hpp:5439
MS_search_engine_specific_score_for_proteoforms
search engine specific score for proteoforms: Search engine specific proteoform scores.
Definition cv.hpp:9141
UNIMOD_dHex_2_Hex_3_HexNAc_3_
dHex(2)Hex(3)HexNAc(3): DHex(2) Hex(3) HexNAc(3).
Definition cv.hpp:13356
MS_SILAC_light_reagent
SILAC light reagent: The name of the sample labelled with the light SILAC label.
Definition cv.hpp:8295
UNIMOD_Xle__Asn
Xle->Asn: Leu/Ile->Asn substitution.
Definition cv.hpp:10533
MS_XCMS
XCMS: Bioconductor package XCMS for preprocessing high-throughput, untargeted analyte profiling data.
Definition cv.hpp:5148
MS_protein_group_level_p_value
protein group-level p-value: Estimation of the p-value for protein groups.
Definition cv.hpp:7563
MS_ELEMENT2_OBSOLETE
ELEMENT2: ThermoFinnigan ELEMENT2 MS.
Definition cv.hpp:831
MS_frag__a_ion___H2O
frag: a ion - H2O: Fragmentation information, type of product: a ion without water.
Definition cv.hpp:4134
MS_SEQUEST_ProcessAll
SEQUEST:ProcessAll:
Definition cv.hpp:3744
UO_electric_field_strength_unit
electric field strength unit: The electric field strength is a unit which is a measure of the potenti...
Definition cv.hpp:14598
MS_activation_energy
activation energy: Activation Energy.
Definition cv.hpp:2133
MS_iTRAQ_reagent_116
iTRAQ reagent 116: The name of the sample labelled with the iTRAQ reagent 116.
Definition cv.hpp:8331
MS_peptide_modification_details
peptide modification details: The children of this term can be used to describe modifications.
Definition cv.hpp:4809
MS_decoy_DB_generation_algorithm
decoy DB generation algorithm: Name of algorithm used for decoy generation.
Definition cv.hpp:4752
UNIMOD_Hex_8_HexNAc_1_
Hex(8)HexNAc(1): Hex(8) HexNAc.
Definition cv.hpp:12504
MS_SIFT
SIFT (selected ion flow tube): A device in which m/z selected ions are entrained in an inert carrier ...
Definition cv.hpp:1386
MS_4000_Series_Explorer_Software
4000 Series Explorer Software: SCIEX or Applied Biosystems software for data acquisition and analysis...
Definition cv.hpp:2649
MS_Acquity_SQD
Acquity SQD: Waters quadrupole based Acquity SQD.
Definition cv.hpp:5775
MS_product_interpretation_rank
product interpretation rank: The integer rank given an interpretation of an observed product ion....
Definition cv.hpp:3486
MS_isotopic_fit_score
isotopic fit score: The isotopic fit confidence score.
Definition cv.hpp:9096
UNIMOD_dHex_1_Hex_5_HexNAc_2_
dHex(1)Hex(5)HexNAc(2): DHex Hex(5) HexNAc(2).
Definition cv.hpp:12471
UNIMOD_dHex_1_Hex_4_HexA_1_HexNAc_2_
dHex(1)Hex(4)HexA(1)HexNAc(2): DHex Hex(4) HexA HexNAc(2).
Definition cv.hpp:13131
MS_protein
protein: A compound composed of one or more chains of amino acids in a specific order determined by t...
Definition cv.hpp:3348
UNIMOD_dHex_1_Hex_5_HexNAc_3_NeuGc_1_Sulf_1_
dHex(1)Hex(5)HexNAc(3)NeuGc(1)Sulf(1): DHex Hex(5) HexNAc(3) NeuGc Sulf.
Definition cv.hpp:12735
MS_6230A_Time_of_Flight_LC_MS
6230A Time-of-Flight LC/MS: The 6230A Time-of-Flight LC/MS is a Agilent liquid chromatography instrum...
Definition cv.hpp:8811
MS_ProteomeDiscoverer_max_peptide_length
ProteomeDiscoverer:max peptide length: Maximum peptide length.
Definition cv.hpp:7419
UNIMOD_dHex_3_Hex_3_HexNAc_2_
dHex(3)Hex(3)HexNAc(2): DHex(3) Hex(3) HexNAc(2).
Definition cv.hpp:13692
MS_Voyager_DE_STR
Voyager-DE STR: Applied Biosystems/MDS SCIEX Voyager-DE STR MS.
Definition cv.hpp:978
MS_SQID_protein_score
SQID:protein score: The SQID result 'protein score'.
Definition cv.hpp:6081
MS_None____OBSOLETE
None ??: None.
Definition cv.hpp:630
MS_TOPP_FeatureLinkerUnlabeled
TOPP FeatureLinkerUnlabeled: Groups corresponding features from multiple maps.
Definition cv.hpp:6975
UNIMOD_CHDH
CHDH: Cis-14-hydroxy-10,13-dioxo-7-heptadecenoic ester.
Definition cv.hpp:10206
UO_normal
normal: A unit of concentration which is one gram equivalent of a solute per liter of solution....
Definition cv.hpp:14028
MS_alpha_cleavage_OBSOLETE
alpha-cleavage: A homolytic cleavage where the bond fission occurs between at the atom adjacent to th...
Definition cv.hpp:1803
MS_multidimensional_chromatography_modulation_description
multidimensional chromatography modulation description: Multidimensional chromatography modulation de...
Definition cv.hpp:6702
UNIMOD_Hex_1_HexA_1_HexNAc_1_
Hex(1)HexA(1)HexNAc(1): Hex HexA HexNAc.
Definition cv.hpp:12402
MS_Resampler
Resampler: Transforms an LC/MS map into a resampled map or a png image.
Definition cv.hpp:2961
MS_IsoProbe
IsoProbe: Waters IsoProbe MS.
Definition cv.hpp:861
MS_ionization_efficiency
ionization efficiency: The ratio of the number of ions formed to the number of electrons,...
Definition cv.hpp:1749
UNIMOD_Nitrosyl
Nitrosyl: S-nitrosylation.
Definition cv.hpp:9846
MS_AA_sequence
AA sequence: The sequence is a amino acid sequence.
Definition cv.hpp:4440
MS_TIC_chromatogram
TIC chromatogram (total ion current chromatogram): Chromatogram obtained by plotting the total ion cu...
Definition cv.hpp:1110
MS_ProteinLynx_Ladder_Score
ProteinLynx:Ladder Score: Waters ProteinLynx Ladder score.
Definition cv.hpp:5112
MS_OMSSA_evalue
OMSSA:evalue: OMSSA E-value.
Definition cv.hpp:4392
UNIMOD_dHex_2_Hex_3_HexNAc_4_
dHex(2)Hex(3)HexNAc(4): DHex(2) Hex(3) HexNAc(4).
Definition cv.hpp:13365
MS_ProteomeDiscoverer_Spectrum_Selector_Upper_RT_Limit
ProteomeDiscoverer:Spectrum Selector:Upper RT Limit: Upper retention-time limit.
Definition cv.hpp:5277
UO_nanomolal
nanomolal: A molality unit which is equal to one thousandth of one millionth of a molal or 10^[-9] m.
Definition cv.hpp:14016
UNIMOD_dHex_1_Hex_1_HexNAc_2_NeuAc_2_
dHex(1)Hex(1)HexNAc(2)NeuAc(2): DHex Hex HexNAc(2) NeuAc(2).
Definition cv.hpp:13086
MS_protein_modifications
protein modifications: Encoding of modifications of the protein sequence from the specified accession...
Definition cv.hpp:3507
MS_SEQUEST_InfoAndLog
SEQUEST:InfoAndLog:
Definition cv.hpp:3768
UNIMOD_mTRAQ
mTRAQ: MTRAQ light.
Definition cv.hpp:11052
MS_Percolator
Percolator: Percolator.
Definition cv.hpp:4875
MS_TSQ_Quantum_Access
TSQ Quantum Access: Thermo Scientific TSQ Quantum Access MS.
Definition cv.hpp:2604
MS_microflex_LT
microflex LT: Bruker Daltonics' microflex LT: MALDI TOF.
Definition cv.hpp:2772
MS_regular_expression
regular expression: Regular expression.
Definition cv.hpp:7887
UNIMOD_Phe__Glu
Phe->Glu: Phe->Glu substitution.
Definition cv.hpp:11532
MS_postprocessing_software
postprocessing software: Postprocessing software.
Definition cv.hpp:7692
MS_LCQ_Advantage
LCQ Advantage: ThermoFinnigan LCQ Advantage MS.
Definition cv.hpp:867
UNIMOD_dHex_1_Hex_3_HexNAc_3_Sulf_1_
dHex(1)Hex(3)HexNAc(3)Sulf(1): DHex Hex(3) HexNAc(3) Sulf.
Definition cv.hpp:13107
MS_OpenXQuest_combined_score
OpenXQuest:combined score: OpenXQuest's combined score for a cross-link spectrum match.
Definition cv.hpp:8502
MS_ProteinExtractor_UseMascot
ProteinExtractor:UseMascot: Flag indicating to include Mascot scoring for calculation of the ProteinE...
Definition cv.hpp:4689
MS_Xcalibur
Xcalibur: Thermo Finnigan software for data acquisition and analysis.
Definition cv.hpp:2202
MS_Laser_Desorption_OBSOLETE
Laser Desorption: The formation of ions through the interaction of a laser with a material or with ga...
Definition cv.hpp:1290
MS_ProteomeDiscoverer_2__Dynamic_Modification_OBSOLETE
ProteomeDiscoverer:2. Dynamic Modification: ProteomeDiscoverer's 2nd dynamic post-translational modif...
Definition cv.hpp:5577
UNIMOD_HCysteinyl
HCysteinyl: S-homocysteinylation.
Definition cv.hpp:12054
UNIMOD_dHex_1_Hex_3_HexNAc_4_Pent_1_
dHex(1)Hex(3)HexNAc(4)Pent(1): DHex Hex(3) HexNAc(4) Pent.
Definition cv.hpp:12540
MS_lower_score_better
lower score better: Indicates that a lower score is better.
Definition cv.hpp:6774
MS_iTRAQ_reagent_118
iTRAQ reagent 118: The name of the sample labelled with the iTRAQ reagent 118.
Definition cv.hpp:8337
MS_TMT_quantitation_analysis
TMT quantitation analysis: Quantitation analysis using the Thermo Fisher amine-reactive tandem mass t...
Definition cv.hpp:6471
MS_ProteinProspector_expectation_value
ProteinProspector:expectation value: The ProteinProspector result 'Expectation value'.
Definition cv.hpp:6582
MS_Channeltron_Detector
Channeltron Detector (channeltron): A horn-shaped (or cone-shaped) continuous dynode particle multipl...
Definition cv.hpp:642
MS_TSQ_Altis
TSQ Altis: Thermo Scientific TSQ Altis Triple Quadrupole MS.
Definition cv.hpp:9045
UNIMOD_dHex_3_Hex_2_HexNAc_3_
dHex(3)Hex(2)HexNAc(3): DHex(3) Hex(2) HexNAc(3).
Definition cv.hpp:13125
MS_PRIDE_Converter2
PRIDE Converter2: Java software designed to convert one of several proteomics identification results ...
Definition cv.hpp:7455
MS_native_spectrum_identifier_format
native spectrum identifier format: Describes how the native spectrum identifiers are formated.
Definition cv.hpp:2970
MS_collision_induced_dissociation
collision-induced dissociation: The dissociation of an ion after collisional excitation....
Definition cv.hpp:747
MS_ProteomeDiscoverer_max_number_neutral_loss
ProteomeDiscoverer:max number neutral loss: Maximum number of same neutral losses.
Definition cv.hpp:7422
MS_charge_array
charge array: A data array of charge values.
Definition cv.hpp:2154
MS_MaxQuant_PTM_Score_threshold
MaxQuant:PTM Score threshold: Threshold for MaxQuant:PTM Score.
Definition cv.hpp:8142
MS_TOPP_SpecLibSearcher
TOPP SpecLibSearcher: Identifies peptide MS2 spectra by spectral matching with a searchable spectral ...
Definition cv.hpp:7008
UNIMOD_dHex_1_Hex_3_HexNAc_2_NeuGc_1_
dHex(1)Hex(3)HexNAc(2)NeuGc(1): DHex Hex(3) HexNAc(2) NeuGc.
Definition cv.hpp:13116
MS_SEQUEST_out_file_format
SEQUEST out file format: Source file for this mzIdentML was in SEQUEST out file format.
Definition cv.hpp:4035
MS_product_ion_m_z
product ion m/z: The m/z of the product ion.
Definition cv.hpp:4101
UO_newton_per_meter
newton per meter: A surface tension unit which is equal to one newton per meter.
Definition cv.hpp:14559
MS_gas_chromatography_separation
gas chromatography separation: Gas chromatography (GC) is a separation technique in which the mobile ...
Definition cv.hpp:7263
MS_____DE__
(?=[DE]): Regular expression for Asp-N-ambic.
Definition cv.hpp:4242
MS_Phenyx_MinPepzscore
Phenyx:MinPepzscore: The minimal peptide z-score for a peptide to be considered for a valid identific...
Definition cv.hpp:4560
MS_PeptideShaker_peptide_score
PeptideShaker peptide score: The probability based PeptideShaker peptide score.
Definition cv.hpp:7854
MS_hr_ms_compound_identification_confidence_level
hr-ms compound identification confidence level: Refined High Resolution mass spectrometry confidence ...
Definition cv.hpp:9288
MS_ProteomeDiscoverer_Maximum_Delta_Cn
ProteomeDiscoverer:Maximum Delta Cn: Delta Cn threshold for filtering out PSM's.
Definition cv.hpp:6723
MS_transition_purported_from_an_MS_MS_spectrum_on_a_different__specified_instrument
transition purported from an MS/MS spectrum on a different, specified instrument: The transition has ...
Definition cv.hpp:3444
MS_clustal_aln
clustal aln: ClustalW ALN (multiple alignment) format.
Definition cv.hpp:4461
UNIMOD_AHA_SS
AHA-SS: Azidohomoalanine coupled to reductively cleaved tag.
Definition cv.hpp:12000
UNIMOD_GNLLFLACYCIGG
GNLLFLACYCIGG: Ubiquitin D (FAT10) leaving after trypsin digestion Gly-Asn-Leu-Leu-Phe-Leu-Ala-Cys-Ty...
Definition cv.hpp:13794
UO_kilogram_per_square_meter
kilogram per square meter: An area density unit which is equal to the mass of an object in kilograms ...
Definition cv.hpp:14061
MS_feature_level_quantification_datatype
feature-level quantification datatype: The data type of the value reported in a QuantLayer for a feat...
Definition cv.hpp:8625
MS_Search_engine_output_file_URI
Search engine output file URI: URI of one search engine output file associated to one PX submission.
Definition cv.hpp:8970
MS_identification_parameter
identification parameter: Identification parameter for the search engine run.
Definition cv.hpp:8433
MS_Progenesis_QI_normalised_abundance
Progenesis QI normalised abundance: The normalised abundance produced by Progenesis QI LC-MS.
Definition cv.hpp:9084
UNIMOD_DiLeu4plex118
DiLeu4plex118: Accurate mass for DiLeu 118 isobaric tag.
Definition cv.hpp:12165
MS_ion_optics_type
ion optics type: The electrical potential used to impart kinetic energy to ions in a mass spectromete...
Definition cv.hpp:2445
UNIMOD_Met__Xle
Met->Xle: Met->Leu/Ile substitution.
Definition cv.hpp:10596
MS_6220_Time_of_Flight_LC_MS
6220 Time-of-Flight LC/MS: The 6220 Time-of-Flight LC/MS is a Agilent liquid chromatography instrumen...
Definition cv.hpp:2694
UNIMOD_dHex_1_Hex_4_HexNAc_3_
dHex(1)Hex(4)HexNAc(3): DHex Hex(4) HexNAc(3).
Definition cv.hpp:12486
MS_zoom_scan
zoom scan: Special scan mode, where data with improved resolution is acquired. This is typically achi...
Definition cv.hpp:2094
MS_Supported_dataset_by_repository
Supported dataset by repository: The PX dataset is supported by and is available through the submissi...
Definition cv.hpp:8991
MS_LTQ_FT
LTQ FT: Finnigan LTQ FT MS.
Definition cv.hpp:1929
MS_Waters_nativeID_format__combined_spectra
Waters nativeID format, combined spectra: Waters comma separated list of spectra that have been combi...
Definition cv.hpp:8403
UNIMOD_Hex_2_HexNAc_3_NeuGc_1_
Hex(2)HexNAc(3)NeuGc(1): Hex(2) HexNAc(3) NeuGc.
Definition cv.hpp:13056
UNIMOD_dHex_1_Hex_5_HexNAc_4_NeuAc_1_
dHex(1)Hex(5)HexNAc(4)NeuAc(1): DHex Hex(5) HexNAc(4) NeuAc.
Definition cv.hpp:12333
UNIMOD_ICAT_C
ICAT-C: Applied Biosystems cleavable ICAT(TM) light.
Definition cv.hpp:9564
MS_journal_article_keyword
journal article keyword: Keyword present in a scientific publication.
Definition cv.hpp:6192
MS_TopMG_fixed_modification
TopMG:fixed modification: Fixed modifications for TopMG searching.
Definition cv.hpp:9228
MS_peptide_attribute
peptide attribute: A nonphysical attribute that can be used to describe a peptide.
Definition cv.hpp:3363
MS_ProteomeDiscoverer_SN_Threshold
ProteomeDiscoverer:SN Threshold: Signal-to-Noise ratio below which peaks are removed.
Definition cv.hpp:5253
UNIMOD_dHex_1_Hex_3_HexA_1_HexNAc_2_
dHex(1)Hex(3)HexA(1)HexNAc(2): DHex Hex(3) HexA HexNAc(2).
Definition cv.hpp:13041
UNIMOD_Methylamine
Methylamine: Michael addition with methylamine.
Definition cv.hpp:9975
MS_non_standard_data_array
non-standard data array: A data array that contains data not covered by any other term in this group....
Definition cv.hpp:3045
MS_microflex_II
microflex II: Bruker Daltonics' microflex II: MALDI TOF.
Definition cv.hpp:5055
MS_SCIEX_TOF_TOF_database
SCIEX TOF/TOF database: Applied Biosystems/MDS Analytical Technologies TOF/TOF instrument database.
Definition cv.hpp:4848
UNIMOD_dHex_1_Hex_3_HexNAc_3_NeuAc_2_
dHex(1)Hex(3)HexNAc(3)NeuAc(2): DHex Hex(3) HexNAc(3) NeuAc(2).
Definition cv.hpp:13293
MS_nier_johnson_geometry_OBSOLETE
nier-johnson geometry: An arrangement for a double-focusing mass spectrometer in which a deflection o...
Definition cv.hpp:1449
UO_count_per_molar_second
count per molar second: A rate unit which is equal to one over one molar second.
Definition cv.hpp:14643
MS_ion_neutral_species_reaction_OBSOLETE
ion/neutral species reaction: A process wherein a charged species interacts with a neutral reactant t...
Definition cv.hpp:1863
UNIMOD_dHex_1_Hex_2_HexNAc_2_NeuGc_2_
dHex(1)Hex(2)HexNAc(2)NeuGc(2): DHex Hex(2) HexNAc(2) NeuGc(2).
Definition cv.hpp:13194
MS_Pro_BLAST
Pro BLAST: Applied Biosystems|MDS SCIEX software for MS-BLAST identification.
Definition cv.hpp:2682
MS_Compass_OpenAccess
Compass OpenAccess: Bruker compass OpenAccess software.
Definition cv.hpp:2814
MS_number_of_molecular_hypothesis_considered
number of molecular hypothesis considered: Number of Molecular Hypothesis Considered - This is the nu...
Definition cv.hpp:3990
MS_scan_attribute
scan attribute: Scan properties that are associated with a value.
Definition cv.hpp:2115
UNIMOD_Gln__Met
Gln->Met: Gln->Met substitution.
Definition cv.hpp:11799
UNIMOD_Label_13C_3_15N_1_
Label:13C(3)15N(1): 13C3 15N1 label for SILAC.
Definition cv.hpp:12105
MS_IMS_OBSOLETE
IMS (ion mobility spectrometry): The separation of ions according to their velocity through a buffer ...
Definition cv.hpp:1263
MS_mass_defect_OBSOLETE
mass defect: The difference between the monoisotopic and nominal mass of a molecule or atom.
Definition cv.hpp:1059
MS_ProteomeDiscoverer_Peptide_NTerminus
ProteomeDiscoverer:Peptide NTerminus: Static modification for the N terminal of the peptide used duri...
Definition cv.hpp:5451
MS_retention_time_window_attribute
retention time window attribute: An attribute of a window in time about which a peptide might elute f...
Definition cv.hpp:3453
MS_ion_molecule_reaction_OBSOLETE
ion/molecule reaction: The reaction of an ion with a neutral molecule. The term ion-molecule reaction...
Definition cv.hpp:1857
MS_Phenyx_input_parameter
Phenyx input parameter: Search engine input parameters specific to Phenyx.
Definition cv.hpp:6741
MS_Empower
Empower: Waters Empower software for liquid chromatography and mass spectrometry acquisition.
Definition cv.hpp:5796
UNIMOD_Ethanolamine
Ethanolamine: Carboxyl modification with ethanolamine.
Definition cv.hpp:10863
MS_apexControl
apexControl: Bruker software for data acquisition.
Definition cv.hpp:2787
MS_TOPP_software
TOPP software: TOPP (The OpenMS proteomics pipeline) software.
Definition cv.hpp:2925
UO_electrical_conduction_unit
electrical conduction unit: A unit which represents a standard measurement of the movement of electri...
Definition cv.hpp:14583
PEFF_DbVersion
DbVersion: Database version (release date) according to database provider.
Definition cv.hpp:144
UNIMOD_Delta_H_4_C_2_O__1_S_1_
Delta:H(4)C(2)O(-1)S(1): S-Ethylcystine from Serine.
Definition cv.hpp:9957
UNIMOD_Label_13C_9_15N_1_
Label:13C(9)15N(1): 13C(9) 15N(1) Silac label.
Definition cv.hpp:9834
MS_ICPL_reagent_6
ICPL reagent 6: The name of the sample labelled with the ICPL reagent 6.
Definition cv.hpp:8280
MS_Reprocessed_subset_dataset
Reprocessed subset dataset: A subset of the raw files included in the original dataset (or group of o...
Definition cv.hpp:9009
MS_text_format
text format: Simple text file format of "m/z [intensity]" values for a PMF (or single MS2) search.
Definition cv.hpp:4515
UNIMOD_Label_13C_9_
Label:13C(9): 13C(9) Silac label.
Definition cv.hpp:9729
MS_MassIVE_dataset_URI
MassIVE dataset URI: URI that allows the access to one dataset in the MassIVE repository....
Definition cv.hpp:7914
UNIMOD_ethylamino
ethylamino: Ethyl amino.
Definition cv.hpp:11127
MS_quadrupole_ion_trap
quadrupole ion trap: Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional ion t...
Definition cv.hpp:546
UNIMOD_SMA
SMA: N-Succinimidyl-2-morpholine acetate.
Definition cv.hpp:9438
MS_B
B (magnetic field strength): A property of space that produces a force on a charged particle equal to...
Definition cv.hpp:339
MS_Voyager_DE_PRO
Voyager-DE PRO: Applied Biosystems/MDS SCIEX Voyager-DE PRO MS.
Definition cv.hpp:975
UNIMOD_Asp__His
Asp->His: Asp->His substitution.
Definition cv.hpp:10440
UNIMOD_dHex_1_Hex_2_HexNAc_2_NeuGc_1_
dHex(1)Hex(2)HexNAc(2)NeuGc(1): DHex Hex(2) HexNAc(2) NeuGc —OR— Hex(3) HexNAc(2) NeuAc.
Definition cv.hpp:13032
MS_nanoACQUITY_UPLC_with_HDX_Technology
nanoACQUITY UPLC with HDX Technology: Waters LC-system nanoACQUITY UPLC with HDX Technology.
Definition cv.hpp:5718
UO_radioactivity_concentration
radioactivity concentration: A concentration unit which is a standard measure of the amount of radioa...
Definition cv.hpp:14754
MS_param__z_1_ion
param: z+1 ion: Parameter information, type of product: z+1 ion.
Definition cv.hpp:4623
MS_decoy_DB_from_IPI_chicken_OBSOLETE
decoy DB from IPI_chicken: Decoy database from a International Protein Index database for Gallus gall...
Definition cv.hpp:4296
UNIMOD_Xlink_BuUrBu_196_
Xlink:BuUrBu[196]: Intact BuUrBu crosslinker.
Definition cv.hpp:13551
MS_neptune
neptune: ThermoFinnigan NEPTUNE MS.
Definition cv.hpp:903
UO_momentum_unit
momentum unit: A unit which is a standard measure of the quantity of motion measured by the product o...
Definition cv.hpp:13974
UNIMOD_Thr__Asp
Thr->Asp: Thr->Asp substitution.
Definition cv.hpp:11865
MS_microTOF_LC
microTOF LC: Bruker Daltonics' microTOF LC: ESI TOF, Nanospray, APCI, APPI.
Definition cv.hpp:900
UNIMOD_BDMAPP
BDMAPP: Mass Defect Tag on lysine e-amino.
Definition cv.hpp:10806
UNIMOD_Trp__His
Trp->His: Trp->His substitution.
Definition cv.hpp:11937
UNIMOD_Sulfo_NHS_LC_LC_Biotin
Sulfo-NHS-LC-LC-Biotin: Biot_LC_LC.
Definition cv.hpp:10353
MS_dissociation_method
dissociation method: Fragmentation method used for dissociation or fragmentation.
Definition cv.hpp:408
UNIMOD_LG_anhyropyrrole
LG-anhyropyrrole: Levuglandinyl-lysine anhyropyrrole adduct.
Definition cv.hpp:11181
UNIMOD_Hydroxyheme
Hydroxyheme: Hydroxyheme.
Definition cv.hpp:10212
MS_PDA
PDA (photodiode array detector): An array detector used to record spectra in the ultraviolet and visi...
Definition cv.hpp:2529
MS_instrument
instrument: Description of the instrument or the mass spectrometer.
Definition cv.hpp:1983
UO_millivolt
millivolt: An electric potential difference unit which is equal to one thousandth of a volt or 10^[-3...
Definition cv.hpp:14538
MS______EZ_____P_
(?<=[EZ])(?!P): Regular expression for V8-E.
Definition cv.hpp:4431
UNIMOD_dHex_2_Hex_4_HexNAc_3_Pent_1_
dHex(2)Hex(4)HexNAc(3)Pent(1): DHex(2) Hex(4) HexNAc(3) Pent.
Definition cv.hpp:12579
MS_dalton_OBSOLETE
dalton: A non-SI unit of mass (symbol Da) that is equal to the unified atomic mass unit: 1....
Definition cv.hpp:1017
UNIMOD_Met__Phe
Met->Phe: Met->Phe substitution.
Definition cv.hpp:11691
UNIMOD_Asp__Ser
Asp->Ser: Asp->Ser substitution.
Definition cv.hpp:11481
UNIMOD_dHex_1_Hex_2_HexNAc_2_NeuAc_1_Sulf_1_
dHex(1)Hex(2)HexNAc(2)NeuAc(1)Sulf(1): DHex Hex(2) HexNAc(2) NeuAc Sulf.
Definition cv.hpp:13059
MS_TOPP_MapRTTransformer
TOPP MapRTTransformer: Applies retention time transformations to maps.
Definition cv.hpp:6966
PEFF_Prefix
Prefix: Sequence Database Prefix.
Definition cv.hpp:132
UNIMOD_dHex_2_Hex_3_HexNAc_3_NeuAc_1_
dHex(2)Hex(3)HexNAc(3)NeuAc(1): DHex(2) Hex(3) HexNAc(3) NeuAc —OR— Hex(2) HexNAc(4) dHex(2) Kdn.
Definition cv.hpp:13263
MS_spectra_data_details
spectra data details: Child-terms contain information to map the results back to spectra.
Definition cv.hpp:4992
UO_mole_fraction
mole fraction: A concentration unit which denotes the number of moles of solute as a proportion of th...
Definition cv.hpp:14031
MS_mathieu_stability_diagram_OBSOLETE
mathieu stability diagram: A graphical representation expressed in terms of reduced coordinates that ...
Definition cv.hpp:1509
PEFF_KW
KW: Entry associated keyword(s).
Definition cv.hpp:225
MS_ProteinLynx_Global_Server_mass_spectrum_XML_format
ProteinLynx Global Server mass spectrum XML format: Peak list file format used by ProteinLynx Global ...
Definition cv.hpp:2502
UO_volume_per_unit_volume
volume per unit volume: A dimensionless concentration unit which denotes the given volume of the solu...
Definition cv.hpp:14412
UNIMOD_TMAB_2H_9_
TMAB:2H(9): D9-4-trimethyllammoniumbutyryl-.
Definition cv.hpp:10278
UNIMOD_Xle__Asp
Xle->Asp: Leu/Ile->Asp substitution.
Definition cv.hpp:11634
UNIMOD_Gln__Gly
Gln->Gly: Gln->Gly substitution.
Definition cv.hpp:11796
PEFF_Domain
Domain: Sequence range of a domain.
Definition cv.hpp:249
MS_spectrum_interpretation
spectrum interpretation: Collection of terms from the PSI Proteome Informatics standards describing t...
Definition cv.hpp:3513
UO_half_life
half life: A time unit which represents the period over which the activity or concentration of a spec...
Definition cv.hpp:14253
MS_proteogenomics_search
proteogenomics search: Proteogenomics search performed.
Definition cv.hpp:8361
MS_ProteoWizard_msaccess
ProteoWizard msaccess: Filters, processes, and displays mass spectrometry data in a variety of ways.
Definition cv.hpp:7071
MS_study_variable_variation_function
study variable variation function: Function used to calculate the study variable quantification varia...
Definition cv.hpp:9075
MS_quantile_normalization__peptides
quantile normalization, peptides: Normalization of peptide values to approach the same distribution.
Definition cv.hpp:6006
UNIMOD_dHex_2_Hex_2_HexNAc_2_Sulf_2_
dHex(2)Hex(2)HexNAc(2)Sulf(2): DHex(2) Hex(2) HexNAc(2) Sulf(2).
Definition cv.hpp:13029
UNIMOD_Farnesyl
Farnesyl: Farnesylation.
Definition cv.hpp:9474
UNIMOD_MG_H1
MG-H1: Methylglyoxal-derived hydroimidazolone.
Definition cv.hpp:11013
MS_Exactive
Exactive: Thermo Scientific Exactive MS.
Definition cv.hpp:2619
MS_liquid_sample_state
liquid sample state: State if the sample is in liquid form.
Definition cv.hpp:423
MS_Bruker_Daltonics_amaZon_series
Bruker Daltonics amaZon series: Bruker Daltonics' amaZon series.
Definition cv.hpp:5040
MS_Phenyx_Pepzscore
Phenyx:Pepzscore: The z-score value of a peptide sequence match in Phenyx.
Definition cv.hpp:4593
MS_residual_gas_analyzer_OBSOLETE
residual gas analyzer: A mass spectrometer used to measure the composition and pressure of gasses in ...
Definition cv.hpp:1359
MS_Triple_Quad_5500
Triple Quad 5500: SCIEX Triple Quad 5500.
Definition cv.hpp:8232
MS_regular_expression_for_modification_localization_scoring
).
Definition cv.hpp:7965
UO_unit_per_liter
unit per liter: A unit per milliliter unit which is equal to one unit of an agreed arbitrary amount p...
Definition cv.hpp:14334
MS_cyclotron_motion_OBSOLETE
cyclotron motion: The circular motion of a charged particle moving at velocity v in a magnetic field ...
Definition cv.hpp:1476
MS_ALEX
ALEX: Analysis of lipid experiments, a calculator for m/z values of intact lipid molecules (MS1).
Definition cv.hpp:9351
MS_small_molecule_analysis_software
small molecule analysis software: Software for the analysis of small molecules.
Definition cv.hpp:9057
UNIMOD_dHex_2_Hex_4_HexNAc_4_Pent_1_
dHex(2)Hex(4)HexNAc(4)Pent(1): DHex(2) Hex(4) HexNAc(4) Pent.
Definition cv.hpp:12690
MS_Trypsin_K
Trypsin/K (Lys-C): Endoproteinase Lys-C.
Definition cv.hpp:4338
MS_non_leading_protein
non-leading protein: Zero to many proteins within each group should be annotated as non-leading to in...
Definition cv.hpp:7656
MS_PolarisQ
PolarisQ: ThermoFinnigan PolarisQ MS.
Definition cv.hpp:921
MS_second_pass_peptide_identification
second-pass peptide identification: A putative identified peptide found in a second-pass search of pr...
Definition cv.hpp:7473
UNIMOD_HexNAc_1_NeuGc_2_
HexNAc(1)NeuGc(2): HexNAc NeuGc(2).
Definition cv.hpp:12852
MS_linear_OBSOLETE
linear: The mass scan is done in linear mode.
Definition cv.hpp:600
MS_free_electron_laser
free electron laser: Free electron laser uses a relativistic electron beam as the lasing medium which...
Definition cv.hpp:3255
MS_Shimadzu_MALDI_TOF_instrument_model
Shimadzu MALDI-TOF instrument model: Shimadzu MALDI-TOF instrument model.
Definition cv.hpp:2466
MS_PAnalyzer_ambiguous_group_member
PAnalyzer:ambiguous group member: A protein sharing at least one peptide not matched to either conclu...
Definition cv.hpp:7095
UO_microsievert
microsievert: A dose equivalent unit which is equal to one millionth of a sievert or 10^[-6] Sv.
Definition cv.hpp:14217
MS_ion_mobility_spectrometry_OBSOLETE
ion mobility spectrometry: The separation of ions according to their velocity through a buffer gas un...
Definition cv.hpp:1260
MS_SEQUEST_CleavesAt
SEQUEST:CleavesAt:
Definition cv.hpp:3516
MS_marginally_distinguished_protein
marginally distinguished protein: Assigned to a non-leading protein that has some independent evidenc...
Definition cv.hpp:7677
MS_Byonic_Delta_Score
Byonic:Delta Score: The drop in Byonic score from the top-scoring peptide to the next peptide with di...
Definition cv.hpp:7236
UNIMOD_Lys
Lys: Addition of lysine due to transpeptidation.
Definition cv.hpp:12117
MS_nativeID_format__combined_spectra
nativeID format, combined spectra (native spectrum identifier format, combined spectra): Describes ho...
Definition cv.hpp:8397
MS_TopPIC_input_parameter
TopPIC input parameter: Search engine input parameters specific to TopPIC.
Definition cv.hpp:9159
UNIMOD_dHex_2_Hex_3_HexNAc_2_
dHex(2)Hex(3)HexNAc(2): DHex(2) Hex(3) HexNAc(2).
Definition cv.hpp:13338
UO_atto
atto: A prefix in the metric system denoting a factor of 10 to the power of -18.
Definition cv.hpp:14709
PEFF_GeneralComment
GeneralComment: PEFF file general comment.
Definition cv.hpp:168
UO_micro
micro: A prefix in the metric system denoting a factor of 10 to the power of -6.
Definition cv.hpp:14694
MS_fourier_transform_ion_cyclotron_resonance_mass_spectrometer
fourier transform ion cyclotron resonance mass spectrometer: A mass spectrometer based on the princip...
Definition cv.hpp:534
MS_basepeak_chromatogram
basepeak chromatogram: Chromatogram created by creating an array of the most intense peaks at each ti...
Definition cv.hpp:2556
MS_signal_to_noise_array
signal to noise array: A data array of signal-to-noise values.
Definition cv.hpp:2157
MS_MSQuant_PTM_score_threshold
MSQuant:PTM-score threshold: Threshold for MSQuant:PTM-score.
Definition cv.hpp:8139
MS_collision_quadrupole
collision quadrupole: A transmission quadrupole to which an oscillating potential is applied so as to...
Definition cv.hpp:1347
UNIMOD_Xlink_DSSO_104_
Xlink:DSSO[104]: Sulfenic acid fragment of DSSO crosslinker.
Definition cv.hpp:13524
MS_PSM_level_search_engine_specific_statistic
PSM-level search engine specific statistic: Search engine specific peptide spectrum match scores.
Definition cv.hpp:3888
UNIMOD_Tyr__Xle
Tyr->Xle: Tyr->Leu/Ile substitution.
Definition cv.hpp:11997
MS_ISQ
ISQ: Thermo Scientific ISQ single quadrupole MS with the ExtractraBrite source.
Definition cv.hpp:6138
MS_Unsupported_dataset_by_repository
Unsupported dataset by repository: The PX dataset is not fully supported by the submission repository...
Definition cv.hpp:8994
MS_IT
IT (ion trap): A device for spatially confining ions using electric and magnetic fields alone or in c...
Definition cv.hpp:1281
UNIMOD_TMPP_Ac
TMPP-Ac: Tris(2,4,6-trimethoxyphenyl)phosphonium acetic acid N-hydroxysuccinimide ester derivative.
Definition cv.hpp:10980
UNIMOD_BHT
BHT: Michael addition of BHT quinone methide to Cysteine and Lysine.
Definition cv.hpp:9723
MS_SEQUEST_NormalizeXCorrValues
SEQUEST:NormalizeXCorrValues:
Definition cv.hpp:3576
UNIMOD_Hex_2_HexNAc_1_Pent_1_HexA_1_
Hex(2)HexNAc(1)Pent(1)HexA(1): Hex(2) HexNAc Pent HexA.
Definition cv.hpp:13659
UNIMOD_Xle__Val
Xle->Val: Leu/Ile->Val substitution.
Definition cv.hpp:10572
UNIMOD_maleimide3
maleimide3: Maleimide-3-saccharide.
Definition cv.hpp:11226
MS_6538_Q_TOF_LC_MS
6538 Q-TOF LC/MS: The 6538 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrum...
Definition cv.hpp:8784
PEFF_Conversion
Conversion: Description of the conversion from original format to this current one.
Definition cv.hpp:153
UNIMOD_Iodoacetanilide_13C_6_
Iodoacetanilide:13C(6): 13C labelled iodoacetanilide derivative.
Definition cv.hpp:12306
UNIMOD_Myristoyl
Myristoyl: Myristoylation.
Definition cv.hpp:9477
MS_ProteomeDiscoverer_Spectrum_Selector_Unrecognized_Polarity_Replacements
ProteomeDiscoverer:Spectrum Selector:Unrecognized Polarity Replacements: Specifies the polarity of th...
Definition cv.hpp:5274
MS_FileFilter
FileFilter: Extracts or manipulates portions of data from peak, feature or consensus feature files.
Definition cv.hpp:2940
MS_Mascot_matched_ions
Mascot:matched ions: The Mascot result 'Matched ions'.
Definition cv.hpp:3978
MS_multi_collector
multi-collector: A detector system commonly used in inductively coupled plasma mass spectrometers.
Definition cv.hpp:675
MS_ms_ms_search
ms-ms search: An MS2 search (with fragment ions).
Definition cv.hpp:3708
UNIMOD_Hex_2_HexNAc_4_NeuAc_1_
Hex(2)HexNAc(4)NeuAc(1): Hex(2) HexNAc(4) NeuAc.
Definition cv.hpp:13158
UNIMOD_CLIP_TRAQ_3
CLIP_TRAQ_3: CLIP_TRAQ_3.
Definition cv.hpp:10386
UNIMOD_Tween80
Tween80: Tween 80 synthetic polymer terminus.
Definition cv.hpp:13452
MS_PRIDE_project_URI
PRIDE project URI: URI that allows the access to one project in the PRIDE database.
Definition cv.hpp:6210
UO_nanomole
nanomole: A substance unit equal to one thousandth of one millionth of a mole or 10^[-9] mol.
Definition cv.hpp:13926
MS_param__internal_ya_ion
param: internal ya ion: Parameter information, type of product: internal ya ion.
Definition cv.hpp:4620
UNIMOD_Glu__Asp
Glu->Asp: Glu->Asp substitution.
Definition cv.hpp:10464
UNIMOD_Hex_1_HexNAc_2_Sulf_1_
Hex(1)HexNAc(2)Sulf(1): Hex HexNAc(2) Sulf.
Definition cv.hpp:12426
MS_Byonic_Score
Byonic:Score: The Byonic score is the primary indicator of PSM correctness. The Byonic score reflects...
Definition cv.hpp:7233
MS_ProteomeDiscoverer_Xtract_Highest_MZ_OBSOLETE
ProteomeDiscoverer:Xtract:Highest MZ: Highest mass-to-charge (mz) value for spectral peaks in the mea...
Definition cv.hpp:5316
UNIMOD_Arg__Npo
Arg->Npo: Arginine replacement by Nitropyrimidyl ornithine.
Definition cv.hpp:10995
UNIMOD_Bodipy
Bodipy: Bodipy modifications onto cysteine.
Definition cv.hpp:11037
MS_translation_frame
translation frame: The translated open reading frames from a nucleotide database considered in the se...
Definition cv.hpp:3570
UNIMOD_ethylsulfonylethyl
ethylsulfonylethyl: Reaction with ethyl vinyl sulfone.
Definition cv.hpp:12258
MS_ProteomeDiscoverer_Mascot_Weight_of_D_Ions
ProteomeDiscoverer:Mascot:Weight of D Ions: Determines if to use D ions for spectrum matching.
Definition cv.hpp:5652
MS_ProteomeDiscoverer_Reporter_Ions_Quantizer_Quantitation_Method
ProteomeDiscoverer:Reporter Ions Quantizer:Quantitation Method: Quantitation method for isobarically ...
Definition cv.hpp:5514
UO_electronvolt
electronvolt: A non-SI unit of energy (eV) defined as the energy acquired by a single unbound electro...
Definition cv.hpp:14595
UO_dose_equivalent_unit
dose equivalent unit: A unit which is a standard measure of the expression of dose in terms of its bi...
Definition cv.hpp:14190
MS_laser
laser: Device that emits light (electromagnetic radiation) through a process called stimulated emissi...
Definition cv.hpp:3216
UNIMOD_Palmitoyl
Palmitoyl: Palmitoylation.
Definition cv.hpp:9483
MS_CLINPROT
CLINPROT: Bruker CLINPROT software.
Definition cv.hpp:2793
UNIMOD_Biotin_phenacyl
Biotin-phenacyl: Alkylation by biotinylated form of phenacyl bromide.
Definition cv.hpp:10941
MS_TOPP_SpectraFilterNLargest
TOPP SpectraFilterNLargest: Retains the n largest peaks of a peak spectra.
Definition cv.hpp:6867
UNIMOD_NEIAA
NEIAA: N-ethyl iodoacetamide-d0.
Definition cv.hpp:9783
MS_Xevo_TQ_S
Xevo TQ-S: Waters quadrupole based Xevo TQ-S.
Definition cv.hpp:5790
MS_unimolecular_dissociation_OBSOLETE
unimolecular dissociation: Fragmentation reaction in which the molecularity is treated as one,...
Definition cv.hpp:1902
UNIMOD_Ethyl
Ethyl: Ethylation.
Definition cv.hpp:9855
MS_Citius_HRT
Citius HRT: LECO high resolution time-of-flight LC mass spectrometer.
Definition cv.hpp:5820
UNIMOD_Lys__Gly
Lys->Gly: Lys->Gly substitution.
Definition cv.hpp:11658
MS_peptide_ion_level_spectral_count
peptide ion-level spectral count: The number of MS2 spectra identified for a molecular ion defined by...
Definition cv.hpp:8622
MS_peak_area_OBSOLETE
peak area: Area of MS1 peak (e.g. SILAC, 15N).
Definition cv.hpp:5949
MS_solid_sample_state
solid sample state: State if the sample is in solid form.
Definition cv.hpp:426
MS_reflectron_on
reflectron on: Reflectron is on.
Definition cv.hpp:636
MS_micrOTOFcontrol
micrOTOFcontrol: Bruker software for data acquisition.
Definition cv.hpp:2847
MS_Paragon_expression_change_p_value
Paragon:expression change p-value: The Paragon result 'Expression change P-value'.
Definition cv.hpp:3966
MS_dye_laser
dye-laser: Dye lasers use an organic dye as the gain medium.
Definition cv.hpp:3252
UO_grain
grain: An imperial mass unit which is equivalent to 64.798,91 milligrams.
Definition cv.hpp:14886
UNIMOD_ExacTagAmine
ExacTagAmine: ExacTag Amine label mass for 2-4-7-10 plex.
Definition cv.hpp:10884
MS_____BD__
(?=[BD]): Regular expression for Asp-N.
Definition cv.hpp:4239
MS_beta_cleavage_OBSOLETE
beta-cleavage: A homolytic cleavage where the bond fission occurs between at an atom removed from the...
Definition cv.hpp:1806
MS_Agilent_MassHunter_nativeID_format
Agilent MassHunter nativeID format: Native format defined by scanId=xsd:nonNegativeInteger.
Definition cv.hpp:4929
UNIMOD_Glycerophospho
Glycerophospho: Glycerophospho.
Definition cv.hpp:10167
MS_FD
FD (field desorption): The formation of gas-phase ions from a material deposited on a solid surface i...
Definition cv.hpp:1239
UNIMOD_Arg__Met
Arg->Met: Arg->Met substitution.
Definition cv.hpp:10683
UNIMOD_Asn__Val
Asn->Val: Asn->Val substitution.
Definition cv.hpp:11745
MS_biological_replicate
biological replicate: The study variable is 'biological replicate'. This means, the run was generated...
Definition cv.hpp:5841
MS_peptide_sequence_level_e_value
peptide sequence-level e-value: Estimation of the e-value for distinct peptides once redundant identi...
Definition cv.hpp:6030
MS_modification_rescoring_false_localization_rate
modification rescoring:false localization rate: Mod position score: false localization rate.
Definition cv.hpp:7971
UNIMOD_Cation_Zn_II_
Cation:Zn[II]: Replacement of 2 protons by zinc.
Definition cv.hpp:11199
MS_BioTOF_III
BioTOF III: Bruker Daltonics' BioTOF III: ESI TOF.
Definition cv.hpp:5019
UNIMOD_HexNAc_1_NeuAc_1_
HexNAc(1)NeuAc(1): HexNAc NeuAc.
Definition cv.hpp:12387
MS_Bruker_Daltonics_BioTOF_series
Bruker Daltonics BioTOF series: Bruker Daltonics' BioTOF series.
Definition cv.hpp:5010
UNIMOD_Hex_3_HexNAc_5_Sulf_1_
Hex(3)HexNAc(5)Sulf(1): Hex(3) HexNAc(5) Sulf.
Definition cv.hpp:12543
UNIMOD_Cys__Arg
Cys->Arg: Cys->Arg substitution.
Definition cv.hpp:10431
MS_ECD
ECD (electron capture dissociation): A process in which a multiply protonated molecules interacts wit...
Definition cv.hpp:1197
MS_Shimadzu_MALDI_7090
Shimadzu MALDI-7090: Shimadzu MALDI-7090: MALDI-TOF-TOF.
Definition cv.hpp:7596
MS_ProteomeDiscoverer_SEQUEST_FT_High_Confidence_XCorr_Charge2
ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge2: FT high confidence XCorr parameter for c...
Definition cv.hpp:5553
MS_protein_group_level_identification_statistic
protein group-level identification statistic: Identification confidence metric for a protein group.
Definition cv.hpp:7494
MS_frag__b_ion___NH3
frag: b ion - NH3: Ion b-NH3 fragmentation information, type of product: b ion without ammonia.
Definition cv.hpp:4128
MS_Collision_cell_exit_potential
Collision cell exit potential: Potential difference between Q2 and Q3 in a triple quadrupole instrume...
Definition cv.hpp:6252
MS_static_field
static field: An electric or magnetic field that does not change in time.
Definition cv.hpp:1521
MS_UNIFY
UNIFY: Waters UNIFY software for liquid chromatography and mass spectrometry acquisition.
Definition cv.hpp:5799
MS_detector_type
detector type: Type of detector used in the mass spectrometer.
Definition cv.hpp:342
MS_external_array_length
external array length: Describes how many fields an array contains.
Definition cv.hpp:8952
MS_ProteoGrouper_PDH_score
ProteoGrouper:PDH score: A score assigned to a single protein accession (modelled as ProteinDetection...
Definition cv.hpp:7152
MS_low_intensity_data_point_removal
low intensity data point removal: The removal of very low intensity data points that are likely to be...
Definition cv.hpp:2433
UNIMOD_dHex_2_Hex_2_HexNAc_3_NeuGc_1_
dHex(2)Hex(2)HexNAc(3)NeuGc(1): DHex(2) Hex(2) HexNAc(3) NeuGc —OR— Hex(3) HexNAc(3) dHex NeuAc —OR— ...
Definition cv.hpp:13215
MS_intensity_of_precursor_ion
intensity of precursor ion: The intensity of the precursor ion.
Definition cv.hpp:3882
MS_ProteomeDiscoverer_SEQUEST_Peptide_Relevance_Factor
ProteomeDiscoverer:SEQUEST:Peptide Relevance Factor: Specifies a factor to apply to the protein score...
Definition cv.hpp:5454
MS_proton_affinity_OBSOLETE
proton affinity: The proton affinity of a species M is defined as the negative of the enthalpy change...
Definition cv.hpp:1098
MS_distonic_ion_OBSOLETE
distonic ion: A radical cation or anion in which the charge site and the unpaired electron spin canno...
Definition cv.hpp:1659
MS_tandem_mass_spectrometer_OBSOLETE
tandem mass spectrometer: A mass spectrometer designed for mass spectrometry/mass spectrometry.
Definition cv.hpp:1467
MS_SpectraST_dot
SpectraST:dot: SpectraST dot product of two spectra, measuring spectral similarity.
Definition cv.hpp:4650
MS_MS_Amanda_csv_format
MS Amanda csv format: MS Amanda csv output format.
Definition cv.hpp:7827
MS_MapAligner_OBSOLETE
MapAligner: Corrects retention time distortions between maps.
Definition cv.hpp:2949
MS_SEQUEST_sortCV
SEQUEST:sortCV: SEQUEST View / Sort Input Parameters.
Definition cv.hpp:3612
MS_maXis_4G
maXis 4G: Bruker Daltonics' maXis 4G: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.
Definition cv.hpp:7284
MS_protein_cluster_identification_attribute
protein cluster identification attribute: An attribute of the protein cluster concept as used in mzId...
Definition cv.hpp:8550
UNIMOD_Diphthamide
Diphthamide: Diphthamide.
Definition cv.hpp:10056
MS_SCIEX_TOF_TOF_nativeID_format
SCIEX TOF/TOF nativeID format: Native format defined by jobRun=xsd:nonNegativeInteger spotLabel=xsd:s...
Definition cv.hpp:4845
MS_6520B_Q_TOF_LC_MS
6520B Q-TOF LC/MS: The 6520B Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instr...
Definition cv.hpp:8775
UNIMOD_NO_SMX_SMCT
NO_SMX_SMCT: Nitroso Sulfamethoxazole semimercaptal thiol adduct.
Definition cv.hpp:10893
PEFF_SeqStatus
SeqStatus: Sequence Status. Complete or Fragment.
Definition cv.hpp:219
MS_AAIndex_mass_table
AAIndex mass table: The masses used in the mass table are taken from AAIndex.
Definition cv.hpp:4446
MS_possible_charge_state
possible charge state: A possible charge state of the ion in a situation where the charge of an ion i...
Definition cv.hpp:2571
UNIMOD_ICPL
ICPL: Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, light form.
Definition cv.hpp:10035
UNIMOD_Hex_6_Phos_3_
Hex(6)Phos(3): Hex(6) Phos(3).
Definition cv.hpp:13038
MS_autoflex_TOF_TOF
autoflex TOF/TOF: Bruker Daltonics' autoflex TOF/TOF MS: MALDI TOF.
Definition cv.hpp:813
UO_curie_per_liter
curie per liter: A unit of radioactivity concentration which is equal to one curie in a volume of 1 l...
Definition cv.hpp:14757
UNIMOD_Thrbiotinhydrazide
Thrbiotinhydrazide: Oxidized Threonine biotinylated with biotin hydrazide.
Definition cv.hpp:10023
MS_FileConverter
FileConverter: Converts between different MS file formats.
Definition cv.hpp:2937
UO_nanosecond
nanosecond: A time unit which is equal to one thousandth of one millionth of a second or 10^[-9] s.
Definition cv.hpp:14247
MS_mass_spectrometry_imaging
mass spectrometry imaging: A technique in which mass spectra are acquired in a spatially resolved man...
Definition cv.hpp:8013
UO_candela
candela: A luminous intensity unit which equal to the luminous intensity, in a given direction,...
Definition cv.hpp:13845
MS_CRM_chromatogram_OBSOLETE
CRM chromatogram (consecutive reaction monitoring chromatogram): Chromatogram created by creating an ...
Definition cv.hpp:4827
MS_MSnbase
MSnbase: Bioconductor package MSnbase provides infrastructure for manipulation, processing and visual...
Definition cv.hpp:9033
MS_q
q (collision quadrupole): A transmission quadrupole to which an oscillating potential is applied so a...
Definition cv.hpp:1350
MS_SRM_chromatogram
SRM chromatogram (selected reaction monitoring chromatogram): Chromatogram created by creating an arr...
Definition cv.hpp:4821
MS_FAIMS_OBSOLETE
FAIMS (high-field asymmetric waveform ion mobility spectrometry): The separation of ions between two ...
Definition cv.hpp:1233
MS_ProteomeDiscoverer_Non_Fragment_Filter_Remove_Only_Known_Masses
ProteomeDiscoverer:Non-Fragment Filter:Remove Only Known Masses: Determines whether overtone peaks ar...
Definition cv.hpp:5292
MS_ultraflex_III_TOF_TOF
ultraflex III TOF/TOF: Bruker Daltonics' ultraflex III TOF/TOF: MALDI TOF.
Definition cv.hpp:2784
MS_ProteomeDiscoverer_SEQUEST_FT_Medium_Confidence_XCorr_Charge3
ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge3: FT medium confidence XCorr parameter f...
Definition cv.hpp:5568
UO_kilovolt
kilovolt: An electric potential difference unit which is equal to one thousand volts or 10^[3] V.
Definition cv.hpp:14541
MS_ProteinScape_second_round_Phenyx
ProteinScape:second round Phenyx: Flag indicating a second round search with Phenyx.
Definition cv.hpp:6318
MS_sequence_subsumable_protein
sequence subsumable protein: A sequence same-set or sequence sub-set protein where the matches are di...
Definition cv.hpp:5208
UNIMOD_mTRAQ_13C_3_15N_1_
mTRAQ:13C(3)15N(1): MTRAQ medium.
Definition cv.hpp:11055
MS_Andi_CHROM_format
Andi-CHROM format: AIA Analytical Data Interchange file format for chromatography data.
Definition cv.hpp:7779
MS_percent_collision_energy_ramp_end
percent collision energy ramp end: Collision energy at the end of the collision energy ramp in percen...
Definition cv.hpp:7104
MS_enhanced_resolution_scan
enhanced resolution scan (zoom scan): Special scan mode, where data with improved resolution is acqui...
Definition cv.hpp:2097
MS_decoy_DB_from_IPI_rat_OBSOLETE
decoy DB from IPI_rat: Decoy database from a International Protein Index database for Rattus norvegic...
Definition cv.hpp:4278
MS_Agilent_MassHunter_format
Agilent MassHunter format: A data file format found in an Agilent MassHunter directory which contains...
Definition cv.hpp:4932
MS_ProteomeDiscoverer_Initial_minimal_peptide_probability
ProteomeDiscoverer:Initial minimal peptide probability: Minimal initial peptide probability to contri...
Definition cv.hpp:5589
MS_iProphet
iProphet: A program in the TPP that calculates distinct peptide probabilities based on several lines ...
Definition cv.hpp:7314
MS_ultraflex_TOF_TOF
ultraflex TOF/TOF: Bruker Daltonics' ultraflex TOF/TOF: MALDI TOF.
Definition cv.hpp:972
MS_manual_validation
manual validation: Result of quality estimation: decision of a manual validation.
Definition cv.hpp:3834
MS_frag__y_ion___NH3
frag: y ion - NH3: Ion y-NH3 fragmentation information, type of product: y ion without ammonia.
Definition cv.hpp:4131
MS_generic_experimental_condition
generic experimental condition: The experimental condition is given in the value of this term.
Definition cv.hpp:5856
UNIMOD_Label_13C_4_15N_2__GG
Label:13C(4)15N(2)+GG: 13C(4) 15N(2) Lysine glygly.
Definition cv.hpp:11124
MS_TopPIC_thread_number
TopPIC:thread number: Number of threads used in TopPIC.
Definition cv.hpp:9201
UNIMOD_Glu
Glu: Monoglutamyl.
Definition cv.hpp:10248
UNIMOD_Pro__Thr
Pro->Thr: Pro->Thr substitution.
Definition cv.hpp:10635
UO_turbidity_unit
turbidity unit: A unit used to indicate the clarity of water or other solutions or suspensions,...
Definition cv.hpp:14742
MS_scan
scan: Function or process of the mass spectrometer where it records a spectrum.
Definition cv.hpp:1905
MS_LipidBlast
LipidBlast: LC-MS-based lipidomics and automated identification of lipids using the LipidBlast in-sil...
Definition cv.hpp:9336
MS_numerator_data_type_attribute
numerator data type attribute: Attribute describing the data type of the numerator of a ratio.
Definition cv.hpp:6900
MS_protein_detection_statistical_threshold
protein detection statistical threshold: Estimated statistical threshold used for protein detection.
Definition cv.hpp:8169
MS_MRM_spectrum
MRM spectrum (SRM spectrum): Spectrum obtained when data are acquired from specific product ions corr...
Definition cv.hpp:2394
UNIMOD_Hex_2_HexNAc_3_Sulf_1_
Hex(2)HexNAc(3)Sulf(1): Hex(2) HexNAc(3) Sulf.
Definition cv.hpp:12942
UNIMOD_probiotinhydrazide
probiotinhydrazide: Oxidized proline biotinylated with biotin hydrazide.
Definition cv.hpp:10014
MS_mzidLib_FalseDiscoveryRate
mzidLib:FalseDiscoveryRate: A routine for calculating local FDR, q-value and FDRScore for mzIdentML f...
Definition cv.hpp:7179
UNIMOD_dHex_3_Hex_3_HexNAc_3_Pent_1_
dHex(3)Hex(3)HexNAc(3)Pent(1): DHex(3) Hex(3) HexNAc(3) Pent.
Definition cv.hpp:12576
MS_PAnalyzer
PAnalyzer: PAnalyzer software for getting protein evidence categories.
Definition cv.hpp:6678
MS_quadrupole
quadrupole: A mass spectrometer that consists of four parallel rods whose centers form the corners of...
Definition cv.hpp:543
MS_ProteomeDiscoverer_Mascot_Decoy_Search_OBSOLETE
ProteomeDiscoverer:Mascot:Decoy Search: Determines whether the Proteome Discoverer application search...
Definition cv.hpp:5352
UNIMOD_iTRAQ4plex115
iTRAQ4plex115: Accurate mass for 115.
Definition cv.hpp:10377
MS_charge_inversion_mass_spectrum
charge inversion mass spectrum: The measurement of the relative abundance of ions that result from a ...
Definition cv.hpp:1527
MS_TOPP_IDPosteriorErrorProbability
TOPP IDPosteriorErrorProbability: Estimates posterior error probabilities using a mixture model.
Definition cv.hpp:7023
MS_MarkerView_Software
MarkerView Software: Applied Biosystems|MDS SCIEX software for metabolomics and biomarker profiling.
Definition cv.hpp:2664
UNIMOD_Xlink_DSS_259_
Xlink:DSS[259]: Tris-quenched monolink of DSS/BS3 crosslinker.
Definition cv.hpp:13506
MS_ion_reaction_OBSOLETE
ion reaction: Chemical transformation involving an ion.
Definition cv.hpp:1893
UNIMOD_dHex_2_Hex_2_HexNAc_4_
dHex(2)Hex(2)HexNAc(4): DHex(2) Hex(2) HexNAc(4).
Definition cv.hpp:13161
UNIMOD_Hex_2_HexNAc_2_
Hex(2)HexNAc(2): Hex2HexNAc2.
Definition cv.hpp:9684
UO_relative_luminescence_unit
relative luminescence unit: A relative light unit which is a measure of relative luminescence intensi...
Definition cv.hpp:14736
MS_TOPP_NoiseFilterGaussian
TOPP NoiseFilterGaussian: Removes noise from profile spectra by using a gaussian smoothing.
Definition cv.hpp:6843
MS_LTQ_Orbitrap
LTQ Orbitrap: Finnigan LTQ Orbitrap MS.
Definition cv.hpp:1932
UO_conduction_unit
conduction unit: A unit which represents a standard measurement of the transmission of an entity thro...
Definition cv.hpp:14580
MS_DLI
DLI (direct liquid introduction): The delivery of a liquid sample into a mass spectrometer for spray ...
Definition cv.hpp:1191
MS_Tranche_project_hash
Tranche project hash: Hash assigned by the Tranche resource to a whole project.
Definition cv.hpp:6204
MS_suface_ionization_OBSOLETE
suface ionization: The ionization of a neutral species when it interacts with a solid surface with an...
Definition cv.hpp:1377
MS_amaZon_Speed_ETD
amaZon Speed ETD: Bruker Daltonics' amaZon Speed ETD: ESI quadrupole ion trap, Nanospray,...
Definition cv.hpp:7350
MS_Comet
Comet: Comet open-source sequence search engine developed at the University of Washington.
Definition cv.hpp:7200
MS_lowest_observed_m_z
lowest observed m/z: Lowest m/z value observed in the m/z array.
Definition cv.hpp:2190
MS_peptide_start_positions_on_chromosome
peptide start positions on chromosome: A comma separated list of start positions within exons to whic...
Definition cv.hpp:8385
MS_full_scan_OBSOLETE
full scan: Feature of the ion trap mass spectrometer where MS data is acquired over a mass range.
Definition cv.hpp:2100
UNIMOD_Label_13C_6_
Label:13C(6): 13C(6) Silac label.
Definition cv.hpp:9741
MS_TMT_reagent_131
TMT reagent 131: The name of the sample labelled with the TMT reagent 131.
Definition cv.hpp:8316
MS_counts_per_second
counts per second: The number of counted events observed per second in one or a group of elements of ...
Definition cv.hpp:3141
MS_ion_selection_attribute
ion selection attribute: Ion selection properties that are associated with a value.
Definition cv.hpp:1956
MS_ProteomeDiscoverer_SEQUEST_Weight_of_d_Ions
ProteomeDiscoverer:SEQUEST:Weight of d Ions: Uses c ions for spectrum matching with this relative fac...
Definition cv.hpp:5487
MS_Thermo_nativeID_format__combined_spectra
Thermo nativeID format, combined spectra: Thermo comma separated list of spectra that have been combi...
Definition cv.hpp:8400
MS_4800_Proteomics_Analyzer
4800 Proteomics Analyzer: Applied Biosystems|MDS SCIEX 4800 Proteomics Analyzer.
Definition cv.hpp:2646
MS_TOPP_OpenSwathChromatogramExtractor
TOPP OpenSwathChromatogramExtractor: Extract chromatograms (XIC) from a MS2 map file.
Definition cv.hpp:7044
UNIMOD_IMID_2H_4_
IMID:2H(4): IMID d4.
Definition cv.hpp:9558
MS_GC_Quantum
GC Quantum: GC Quantum.
Definition cv.hpp:2283
MS_command_line_parameters
command-line parameters: Parameters string passed to a command-line interface software application,...
Definition cv.hpp:6069
MS_BioTOF
BioTOF: Bruker Daltonics' BioTOF: ESI TOF.
Definition cv.hpp:5016
MS_flexImaging
flexImaging: Bruker software for data analysis.
Definition cv.hpp:2835
UNIMOD_dHex_1_Hex_5_HexA_1_HexNAc_3_Sulf_1_
dHex(1)Hex(5)HexA(1)HexNAc(3)Sulf(1): DHex Hex(5) HexA HexNAc(3) Sulf.
Definition cv.hpp:12645
UNIMOD_Microcin
Microcin: Microcin E492 siderophore ester from serine.
Definition cv.hpp:10242
MS_p_value__protein_diff_from_1_randomly__OBSOLETE
p-value (protein diff from 1 randomly): P-value (protein diff from 1 randomly).
Definition cv.hpp:3867
UNIMOD_Ub_Br2
Ub-Br2: Ub Bromide probe addition.
Definition cv.hpp:12024
MS_e_2_mass_spectrum
e/2 mass spectrum: A mass spectrum obtained using a sector mass spectrometer in which the electric se...
Definition cv.hpp:1554
MS_Mascot_UseUnigeneClustering
Mascot:UseUnigeneClustering: If true, then the search results are against a nucleic acid database and...
Definition cv.hpp:4380
MS_ProteomeDiscoverer_Mascot_Weight_of_Y_Ions
ProteomeDiscoverer:Mascot:Weight of Y Ions: Determines if to use Y ions for spectrum matching.
Definition cv.hpp:5664
UNIMOD_ICAT_C_13C_9_
ICAT-C:13C(9): Applied Biosystems cleavable ICAT(TM) heavy.
Definition cv.hpp:9567
MS_MALDI_Synapt_HDMS
MALDI Synapt HDMS: Waters oa-ToF based MALDI Synapt HDMS.
Definition cv.hpp:5739
UNIMOD_Arg__Thr
Arg->Thr: Arg->Thr substitution.
Definition cv.hpp:10668
MS_ProteomeDiscoverer_Highest_Charge_State
ProteomeDiscoverer:Highest Charge State: Maximum charge above which peptides are filtered out.
Definition cv.hpp:5340
MS_5800_TOF_TOF
5800 TOF/TOF: SCIEX 5800 TOF-TOF Analyzer.
Definition cv.hpp:4851
MS_emulsion
emulsion: State if the sample is in emulsion form.
Definition cv.hpp:417
UNIMOD_TMT2plex
TMT2plex: Duplex Tandem Mass Tag®.
Definition cv.hpp:10875
UO_milli_300000297
milli: A prefix in the metric system denoting a factor of one thousand.
Definition cv.hpp:14688
MS_param__a_ion
param: a ion: Parameter information, type of product: a ion with charge on the N-terminal side.
Definition cv.hpp:3783
MS_OMSSA
OMSSA: Open Mass Spectrometry Search Algorithm was used to analyze the spectra.
Definition cv.hpp:4830
MS_nth_generation_product_ion_spectrum_OBSOLETE
nth generation product ion spectrum: The mass spectrum recorded from any mass spectrometer in which t...
Definition cv.hpp:1587
MS_TopPIC_proteoform_level_FDR
TopPIC:proteoform-level FDR: TopPIC proteoform-level FDR.
Definition cv.hpp:9213
MS_BioTools
BioTools: Bruker software for data analysis.
Definition cv.hpp:2790
UNIMOD_Delta_Se_1_
Delta:Se(1): Selenyl.
Definition cv.hpp:10179
UNIMOD_Isopropylphospho
Isopropylphospho: O-Isopropylphosphorylation.
Definition cv.hpp:10029
MS_minimum_information_standard
minimum information standard: A specification of a minimum amount of information needed to reproduce ...
Definition cv.hpp:3405
UNIMOD_Unknown_210
Unknown:210: Unidentified modification of 210.1616 found in open search.
Definition cv.hpp:13758
MS_Multiple_Ion_Monitoring
Multiple Ion Monitoring (selected ion monitoring): The operation of a mass spectrometer in which the ...
Definition cv.hpp:984
MS_product_ion_m_z_delta
product ion m/z delta: The difference in m/z of the predicted m/z based on the assigned product ion m...
Definition cv.hpp:3417
MS_internal_peptide_reference_used
internal peptide reference used: States whether an internal peptide reference is used or not in absol...
Definition cv.hpp:7995
MS_TRACE_DSQ
TRACE DSQ: ThermoFinnigan TRACE DSQ MS.
Definition cv.hpp:957
UO_volumetric_flow_rate_unit
volumetric flow rate unit: A unit which is a standard measure of the volume of fluid which passes thr...
Definition cv.hpp:14607
MS_mean
mean: The arithmetic mean.
Definition cv.hpp:9309
UNIMOD_Fluorescein
Fluorescein: 5-Iodoacetamidofluorescein (Molecular Probe, Eugene, OR).
Definition cv.hpp:9618
UNIMOD_LG_Hlactam_K
LG-Hlactam-K: Levuglandinyl - lysine hydroxylactam adduct.
Definition cv.hpp:10317
MS_thermospray_inlet
thermospray inlet: A method for generating gas phase ions from a solution of an analyte by rapid heat...
Definition cv.hpp:486
UNIMOD_Asn__Ser
Asn->Ser: Asn->Ser substitution.
Definition cv.hpp:10602
MS_printed_MALDI_matrix_preparation
printed MALDI matrix preparation: Printed MALDI matrix preparation.
Definition cv.hpp:3207
MS_TOPP_SpectraFilterNormalizer
TOPP SpectraFilterNormalizer: Applies a TIC/maximal intensity normalization to peak spectra.
Definition cv.hpp:6870
MS_low_energy_collisions_OBSOLETE
low energy collisions: A collision between an ion and neutral species with translational energy appro...
Definition cv.hpp:1872
MS_MS_GF_DeNovoScore
MS-GF:DeNovoScore: MS-GF de novo score.
Definition cv.hpp:6600
MS_ProteomeDiscoverer_Use_Neutral_Loss_y_Ions
ProteomeDiscoverer:Use Neutral Loss y Ions: Determines whether y ions with neutral loss are used for ...
Definition cv.hpp:5472
MS_Phenyx_XML_format
Phenyx XML format: Phenyx open XML file format.
Definition cv.hpp:4788
MS_analyzer
analyzer (mass analyzer): Terms used to describe the Analyzer.
Definition cv.hpp:1941
MS_SEQUEST_SequencePartialFilter
SEQUEST:SequencePartialFilter:
Definition cv.hpp:3594
PEFF_XRef
XRef: Cross-reference to an external resource.
Definition cv.hpp:231
MS_FlexControl
FlexControl: Bruker software for data acquisition.
Definition cv.hpp:2229
MS_2E_Mass_Spectrum_OBSOLETE
2E Mass Spectrum: A mass spectrum obtained by setting the electric sector field E to twice the value ...
Definition cv.hpp:1524
UO_pint
pint: An imperial volume unit which is equivalent to 568.261,25 millilitres.
Definition cv.hpp:14877
MS_ProteomeDiscoverer_SEQUEST_Std_High_Confidence_XCorr_Charge2
ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge2: Standard high confidence XCorr paramete...
Definition cv.hpp:5529
MS_value_between_0_and_1_inclusive
value between 0 and 1 inclusive: Value range for probabilities.
Definition cv.hpp:7365
UNIMOD_Thr__Gly
Thr->Gly: Thr->Gly substitution.
Definition cv.hpp:11874
MS_Phenyx_ID
Phenyx:ID: A secondary sequence database identifier of a protein in Phenyx.
Definition cv.hpp:4575
MS_modification_motif
modification motif: The regular expression describing the sequence motif for a modification.
Definition cv.hpp:6039
MS_Scaffold__Minimum_Protein_Probability
Scaffold: Minimum Protein Probability: Minimum protein probability a protein must have to be accepted...
Definition cv.hpp:5127
UNIMOD_Met__Pro
Met->Pro: Met->Pro substitution.
Definition cv.hpp:11703
MS_6540_Q_TOF_LC_MS
6540 Q-TOF LC/MS: The 6540 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrum...
Definition cv.hpp:8787
UNIMOD_Hex_5_HexNAc_4_NeuAc_1_
Hex(5)HexNAc(4)NeuAc(1): Hex(5) HexNAc(4) NeuAc.
Definition cv.hpp:12330
UNIMOD_Hex_3_HexNAc_3_NeuAc_2_Sulf_1_
Hex(3)HexNAc(3)NeuAc(2)Sulf(1): Hex(3) HexNAc(3) NeuAc(2) Sulf.
Definition cv.hpp:13278
MS_solid_state_laser
solid-state laser: Solid state laser materials are commonly made by doping a crystalline solid host w...
Definition cv.hpp:3249
UNIMOD_CoenzymeA
CoenzymeA: Cysteine modified Coenzyme A.
Definition cv.hpp:9858
MS_unified_atomic_mass_unit_OBSOLETE
unified atomic mass unit: A non-SI unit of mass (u) defined as one twelfth of ^12 C in its ground sta...
Definition cv.hpp:1116
UNIMOD_Nmethylmaleimide_water
Nmethylmaleimide+water: Nmethylmaleimidehydrolysis.
Definition cv.hpp:10308
UO_dyne_per_cm
dyne per cm: A surface tension unit which is equal to one dyne per centimeter.
Definition cv.hpp:14562
MS_multiple_stage_mass_spectrometry_spectrum
multiple-stage mass spectrometry spectrum (MSn spectrum): MSn refers to multi-stage MS2 experiments d...
Definition cv.hpp:2367
MS_Pegasus_HRT
Pegasus HRT: LECO high resolution time-of-flight GC mass spectrometer.
Definition cv.hpp:5817
UNIMOD_Hex_2_HexNAc_1_NeuGc_4_
Hex(2)HexNAc(1)NeuGc(4): Hex(2) HexNAc NeuGc(4).
Definition cv.hpp:13275
UNIMOD_IodoU_AMP
IodoU-AMP: (Iodo)-uracil MP.
Definition cv.hpp:9882
MS_negative_ion_mode_OBSOLETE
negative ion mode: OBSOLETE.
Definition cv.hpp:525
UNIMOD_Diethyl
Diethyl: Diethylation, analogous to Dimethylation.
Definition cv.hpp:10341
UO_relative_fluorescence_unit
relative fluorescence unit: A relative light unit which is a measure of relative fluorescence intensi...
Definition cv.hpp:14739
MS_cross_linking_score
cross-linking score: Cross-linking scoring value.
Definition cv.hpp:7986
UNIMOD_Val__Phe
Val->Phe: Val->Phe substitution.
Definition cv.hpp:10752
UNIMOD_Delta_H_4_C_6_
Delta:H(4)C(6): Acrolein addition +76.
Definition cv.hpp:9777
MS_FFR
FFR (field-free region): A section of a mass spectrometer in which there are no electric or magnetic ...
Definition cv.hpp:1035
MS_software_input_parameter
software input parameter: Software input parameters.
Definition cv.hpp:6756
MS_delta_m_z
delta m/z: The difference between a theoretically calculated m/z and the corresponding experimentally...
Definition cv.hpp:6348
UNIMOD_AHA_Alkyne_KDDDD
AHA-Alkyne-KDDDD: Azidohomoalanine (AHA) bound to DDDDK-propargylglycine-NH2 (alkyne).
Definition cv.hpp:11283
UNIMOD_EGCG1
EGCG1: (-)-epigallocatechin-3-gallate.
Definition cv.hpp:11286
MS_percent_of_base_peak
percent of base peak: The magnitude of a peak or measurement element expressed in terms of the percen...
Definition cv.hpp:744
MS_predicted_pI
predicted pI (predicted isoelectric point): The pH of a solution at which a charged molecule would no...
Definition cv.hpp:3291
MS_Surveyor_MSQ
Surveyor MSQ: ThermoFinnigan Surveyor MSQ MS.
Definition cv.hpp:945
MS_SSMS_OBSOLETE
SSMS (Spark Source Mass Spectrometry): Mass spectrometry using spark ionization.
Definition cv.hpp:1398
MS_ProCon
ProCon: Java software designed to convert one of several proteomics identification results formats in...
Definition cv.hpp:7452
UO_picoliter
picoliter: A volume unit which is equal to 10^[-12] L.
Definition cv.hpp:14112
UO_gram_per_milliliter
gram per milliliter: A mass unit density which is equal to mass of an object in grams divided by the ...
Definition cv.hpp:14316
MS_two_dimensional_liquid_chromatography_with_discrete_modulation_time_steps
two-dimensional liquid chromatography with discrete modulation time steps: Two-dimensional liquid chr...
Definition cv.hpp:6714
UNIMOD_Lys__AminoadipicAcid
Lys->AminoadipicAcid: Alpha-amino adipic acid.
Definition cv.hpp:10074
PEFF_Decoy
Decoy: Specifies whether the Sequence Database is a Decoy.
Definition cv.hpp:138
MS_peptide_MD_Score
peptide:MD-Score: MD-Score for PTM site location at the peptide-level.
Definition cv.hpp:8115
MS_____M_
(?<=M): Regular expression for CNBr.
Definition cv.hpp:4407
MS_Synapt_G2_S_MS
Synapt G2-S MS: Waters oa-ToF based Synapt G2-S MS.
Definition cv.hpp:5754
UNIMOD_NeuAc
NeuAc: N-acetyl neuraminic acid.
Definition cv.hpp:12123
UNIMOD_Biotin_Thermo_21911
Biotin:Thermo-21911: Biotin-PEG11-maleimide.
Definition cv.hpp:12183
UO_area_density_unit
area density unit: A density unit which is a standard measure of the mass exerting an influence on a ...
Definition cv.hpp:13965
MS_static_supply_electrospray
static supply electrospray: The sprayer is loaded with sample once.
Definition cv.hpp:6246
MS_PAnalyzer_indistinguishable_protein
PAnalyzer:indistinguishable protein: A member of a group of proteins sharing all peptides that are ex...
Definition cv.hpp:7089
UNIMOD_HexNAc_2_NeuAc_1_
HexNAc(2)NeuAc(1): HexNAc(2) NeuAc.
Definition cv.hpp:12789
UNIMOD_dHex_1_Hex_6_HexNAc_2_
dHex(1)Hex(6)HexNAc(2): DHex Hex(6) HexNAc(2).
Definition cv.hpp:12516
MS_consensus_result
consensus result: Indicates a consensus result from several search engine runs.
Definition cv.hpp:7395
MS_SEQUEST_PeptideNumber
SEQUEST:PeptideNumber: The SEQUEST result '#' in out file (peptide).
Definition cv.hpp:4080
MS_quality_estimation_with_decoy_database
quality estimation with decoy database: Quality estimation by decoy database.
Definition cv.hpp:4017
MS_monoisotopic_mass_OBSOLETE
monoisotopic mass: The mass of an ion or molecule calculated using the mass of the most abundant isot...
Definition cv.hpp:1068
MS_global_FLR
global FLR: Global false localization rate for all localizations in a dataset.
Definition cv.hpp:8532
MS_m_z_calibration
m/z calibration: Calibration of data point m/z positions.
Definition cv.hpp:4860
UNIMOD_Hex_3_HexNAc_3_Pent_1_
Hex(3)HexNAc(3)Pent(1): Hex(3) HexNAc(3) Pent.
Definition cv.hpp:12456
MS_SEQUEST_sort_by_Ions
SEQUEST:sort by Ions: Sort order of SEQUEST search results given by the ions.
Definition cv.hpp:3630
MS_decoy_DB_type_reverse
decoy DB type reverse: Decoy type: Amino acids of protein sequences are used in reverse order.
Definition cv.hpp:4020
MS_PeptideShaker_PSM_confidence
PeptideShaker PSM confidence: The probability based PeptideShaker PSM confidence.
Definition cv.hpp:7851
MS_number_of_spectra_searched
number of spectra searched: Number of spectra in a search.
Definition cv.hpp:7752
UNIMOD_Hex_5_HexNAc_4_NeuAc_1_Ac_1_
Hex(5)HexNAc(4)NeuAc(1)Ac(1): Hex(5) HexNAc(4) NeuAc Ac.
Definition cv.hpp:13743
UNIMOD_Hex_1_HexNAc_1_NeuGc_5_
Hex(1)HexNAc(1)NeuGc(5): Hex HexNAc NeuGc(5).
Definition cv.hpp:13308
UNIMOD_Thyroxine
Thyroxine: Tetraiodo.
Definition cv.hpp:10116
MS_scan_window_upper_limit
scan window upper limit: The lower m/z bound of a mass spectrometer scan window.
Definition cv.hpp:2106
MS_single_ion_monitoring_OBSOLETE
single ion monitoring: The operation of a mass spectrometer to monitor a single ion rather than scann...
Definition cv.hpp:624
UNIMOD_GluGluGluGlu
GluGluGluGlu: Tetraglutamyl.
Definition cv.hpp:10257
MS_m_z_difference
m/z difference (delta m/z): The difference between a theoretically calculated m/z and the correspondi...
Definition cv.hpp:6351
MS_number_of_unmatched_peaks
number of unmatched peaks: The number of unmatched peaks.
Definition cv.hpp:4494
UO_bit
bit: An information unit which refers to a digit in the binary numeral system, which consists of base...
Definition cv.hpp:14493
MS_No_fixed_modifications_searched
No fixed modifications searched: No fixed modifications are included as a parameter for the search,...
Definition cv.hpp:7809
UNIMOD_Hex_2_HexNAc_3_NeuAc_3_
Hex(2)HexNAc(3)NeuAc(3): Hex(2) HexNAc(3) NeuAc(3).
Definition cv.hpp:13290
MS_SILAC_heavy_reagent
SILAC heavy reagent: The name of the sample labelled with the heavy SILAC label.
Definition cv.hpp:8289
UNIMOD_Hex_1_HexNAc_1_NeuAc_2_
Hex(1)HexNAc(1)NeuAc(2): Hex HexNAc NeuAc(2) —OR— Hex HexNAc(3) HexA.
Definition cv.hpp:9705
UNIMOD_Leu__MetOx
Leu->MetOx: Leu->Met substitution and sulfoxidation.
Definition cv.hpp:11097
MS_Phenyx_User
Phenyx:User: The value of the user-defined peptide acceptance filter in Phenyx.
Definition cv.hpp:4590
UNIMOD_Hex_2_HexNAc_2_NeuAc_1_Sulf_1_
Hex(2)HexNAc(2)NeuAc(1)Sulf(1): Hex(2) HexNAc(2) NeuAc Sulf.
Definition cv.hpp:12987
MS_charge_transfer_reaction_OBSOLETE
charge transfer reaction: The reaction of an ion with a neutral species in which some or all of the c...
Definition cv.hpp:1824
MS_resolution_type_OBSOLETE
resolution type: Specify the nature of resolution for the mass analyzer. Resolution is usually either...
Definition cv.hpp:300
MS_search_type
search type: Enumeration of type of search value (i.e. from PMF, sequence tag, MS2).
Definition cv.hpp:3699
MS_metabolic_labelling_purity
metabolic labelling purity: Metabolic labelling: Description of labelling purity. Usually the purity ...
Definition cv.hpp:6657
MS_TOPP_EICExtractor
TOPP EICExtractor: Quantifies signals at given positions in (raw or picked) LC/MS maps.
Definition cv.hpp:6939
MS_einzel_lens
einzel lens: Three element charged particle lens in which the first and third elements are held at th...
Definition cv.hpp:1482
UO_millimole
millimole: A substance unit equal to a thousandth of a mol or 10^[-3] mol.
Definition cv.hpp:13923
MS_unlabeled_sample
unlabeled sample: A sample that has not been labelled or modified. This is often referred to as "ligh...
Definition cv.hpp:6558
PEFF_DbSource
DbSource: Source of the database file.
Definition cv.hpp:141
UNIMOD_TNBS
TNBS: Tri nitro benzene.
Definition cv.hpp:10908
MS_retention_time_s__OBSOLETE
retention time(s): Retention time of the spectrum from the source file.
Definition cv.hpp:3801
UNIMOD_Hex_1_HexNAc_1_NeuGc_2_
Hex(1)HexNAc(1)NeuGc(2): Hex HexNAc NeuGc(2).
Definition cv.hpp:12921
UNIMOD_Cholesterol
Cholesterol: Cholesterol ester.
Definition cv.hpp:10200
MS_calibration_spectrum
calibration spectrum: A spectrum derived from a special calibration source, rather than from the prim...
Definition cv.hpp:3492
MS_sum_of_spectra
sum of spectra: Spectra Sum.
Definition cv.hpp:2322
PEFF_CustomTag
CustomTag: A tag (short string) used to categorize a sequence annotation (variant or modification).
Definition cv.hpp:174
UO_watt_per_square_meter
watt per square meter: An irradiance unit which is equal to 1 watt of radiant power incident per one ...
Definition cv.hpp:14262
UNIMOD_Hex_3_HexNAc_1_HexA_1_
Hex(3)HexNAc(1)HexA(1): Hex(3) HexNAc HexA.
Definition cv.hpp:13662
MS_nucleic_acid_base_modification
nucleic acid base modification: Nucleic acid base modification (substitution, insertion or deletion).
Definition cv.hpp:6528
MS_featureXML
featureXML: OpenMS feature file format.
Definition cv.hpp:8895
MS_Auto_Spec_Ultima_NT
Auto Spec Ultima NT: Waters magnetic sector based AutoSpec Ultima NT MS.
Definition cv.hpp:816
UNIMOD_Trioxidation
Trioxidation: Cysteine oxidation to cysteic acid.
Definition cv.hpp:9990
MS_amaZon_ETD
amaZon ETD: Bruker Daltonics' amaZon ETD: ESI quadrupole ion trap, Nanospray, APCI,...
Definition cv.hpp:5031
MS_spectral_count_proteingroup_level_quantitation
spectral count proteingroup level quantitation: Spectral count proteingroup level quantitation.
Definition cv.hpp:6495
MS_charge_stripping
charge stripping: The reaction of a positive ion with an atom or molecule that results in the removal...
Definition cv.hpp:1164
UNIMOD_Xlink_DST_114_
Xlink:DST[114]: Intact DST crosslinker.
Definition cv.hpp:13557
MS_ProteinScape_SearchEvent
ProteinScape SearchEvent: Source data for this mzIdentML was a ProteinScape SearchEvent.
Definition cv.hpp:4245
UNIMOD_Hex_1_HexNAc_2_dHex_1_
Hex(1)HexNAc(2)dHex(1): Hex1HexNAc2dHex1.
Definition cv.hpp:9681
MS_taxonomy__common_name
taxonomy: common name: This term is used if a common name is specified, e.g. human....
Definition cv.hpp:4800
MS_Shimadzu_Biotech_QTOF_nativeID_format
Shimadzu Biotech QTOF nativeID format: Native format defined by scan=xsd:nonNegativeInteger.
Definition cv.hpp:9117
MS_MAT95XP
MAT95XP: ThermoFinnigan MAT95XP MS.
Definition cv.hpp:891
UNIMOD_Hex_3_HexNAc_5_
Hex(3)HexNAc(5): Hex(3) HexNAc(5).
Definition cv.hpp:13359
MS_Comet_sprank
Comet:sprank: The Comet result 'SpRank'.
Definition cv.hpp:7215
MS_nth_generation_product_ion_spectrum
nth generation product ion spectrum (MSn spectrum): MSn refers to multi-stage MS2 experiments designe...
Definition cv.hpp:2370
MS______FYWL_____P_
(?<=[FYWL])(?!P): Regular expression for Chymotrypsin.
Definition cv.hpp:4404
MS_full_spectrum
full spectrum (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stag...
Definition cv.hpp:2352
UNIMOD_dHex_1_Hex_3_HexA_1_HexNAc_2_Sulf_1_
dHex(1)Hex(3)HexA(1)HexNAc(2)Sulf(1): DHex Hex(3) HexA HexNAc(2) Sulf.
Definition cv.hpp:13083
MS_database_file_formats
database file formats: The children of this term define file formats of the sequence database used.
Definition cv.hpp:4449
MS_product_ion_mobility
product ion mobility: The mobility of an MS2 product ion, as measured by ion mobility mass spectromet...
Definition cv.hpp:6321
MS_TEMPUS_TOF
TEMPUS TOF: ThermoFinnigan TEMPUS TOF MS.
Definition cv.hpp:954
UO_microcurie_per_milliliter
microcurie per milliliter: A unit of radioactivity concentration which is equal to one micro curie in...
Definition cv.hpp:14760
UNIMOD_Phosphoguanosine
Phosphoguanosine: Phospho-guanosine.
Definition cv.hpp:10152
MS_quantification_object_attribute
quantification object attribute: Attributes describing the details of an object relevant for reportin...
Definition cv.hpp:5832
MS_TOPP_FeatureLinkerLabeled
TOPP FeatureLinkerLabeled: Groups corresponding isotope-labeled features in a feature map.
Definition cv.hpp:6972
UNIMOD_Pro__Tyr
Pro->Tyr: Pro->Tyr substitution.
Definition cv.hpp:11781
MS_ProteomeDiscoverer_Amanda_middle_confidence_threshold
ProteomeDiscoverer:Amanda:middle confidence threshold: Relaxed confidence probability score.
Definition cv.hpp:7401
MS_Mascot_homology_threshold
Mascot:homology threshold: The Mascot result 'homology threshold'.
Definition cv.hpp:4518
UNIMOD_Hex_2_HexNAc_2_NeuAc_2_Sulf_1_
Hex(2)HexNAc(2)NeuAc(2)Sulf(1): Hex(2) HexNAc(2) NeuAc(2) Sulf.
Definition cv.hpp:13140
UNIMOD_Gln__Tyr
Gln->Tyr: Gln->Tyr substitution.
Definition cv.hpp:11817
UNIMOD_Asn__Phe
Asn->Phe: Asn->Phe substitution.
Definition cv.hpp:11727
MS_theoretical_mass
theoretical mass: The theoretical mass of the molecule (e.g. the peptide sequence and its modificatio...
Definition cv.hpp:3810
MS_isotopomer_peak_OBSOLETE
isotopomer peak: Identifies a peak when no de-isotoping has been performed. The value slot reports th...
Definition cv.hpp:9114
UNIMOD_Lys__MetOx
Lys->MetOx: Lys->Met substitution and sulfoxidation.
Definition cv.hpp:11100
MS_PRIDE_XML
PRIDE XML: Internal data and submission format of the PRIDE database.
Definition cv.hpp:8253
UNIMOD_BEMAD_C
BEMAD_C: Beta elimination of alkylated Cys followed by Michael addition of DTT.
Definition cv.hpp:10869
MS_peptide_Ascore
peptide:Ascore: A-score for PTM site location at the peptide-level.
Definition cv.hpp:8106
UNIMOD_Asn__Xle
Asn->Xle: Asn->Leu/Ile substitution.
Definition cv.hpp:10620
MS_small_molecule_confidence_measure
small molecule confidence measure: The confidence score produced by a small molecule analysis softwar...
Definition cv.hpp:9087
UNIMOD_Dipyrrolylmethanemethyl
Dipyrrolylmethanemethyl: Dipyrrolylmethanemethyl.
Definition cv.hpp:10161
MS_direct_inlet
direct inlet: The sample is directly inserted into the ion source, usually on the end of a heatable p...
Definition cv.hpp:447
MS_SRM_software
SRM software: Software used to predict, select, or optimize transitions or analyze the results of sel...
Definition cv.hpp:3315
MS_TOPP_DTAExtractor
TOPP DTAExtractor: Extracts spectra of an MS run file to several files in DTA format.
Definition cv.hpp:6909
UNIMOD_CarbamidomethylDTT
CarbamidomethylDTT: Carbamidomethylated DTT modification of cysteine.
Definition cv.hpp:11064
MS_4700_Proteomics_Analyzer
4700 Proteomics Analyzer: Applied Biosystems/MDS SCIEX 4700 Proteomics Analyzer MS.
Definition cv.hpp:786
MS_small_molecule_identification_attribute
small molecule identification attribute: Compound identification information.
Definition cv.hpp:9108
MS_Bruker_FID_nativeID_format
Bruker FID nativeID format: Native format defined by file=xsd:IDREF.
Definition cv.hpp:2991
MS_combined_pmf___ms_ms_search
combined pmf + ms-ms search: Search that includes data from Peptide Mass Fingerprint (PMF) and MS2 (a...
Definition cv.hpp:5154
MS_PeptideShaker
PeptideShaker: PeptideShaker is a software for the interpretation of proteomics identification result...
Definition cv.hpp:7824
UO_rood
rood: An area unit which is equivalent to 1 furlong x 1 rod. This is equal to an area of 1,...
Definition cv.hpp:14865
UNIMOD_Met__Aha
Met->Aha: Methionine replacement by azido homoalanine.
Definition cv.hpp:11073
MS_ProteomeDiscoverer_Mascot_Weight_of_V_Ions
ProteomeDiscoverer:Mascot:Weight of V Ions: Determines if to use V ions for spectrum matching.
Definition cv.hpp:5655
MS_add_others_OBSOLETE
add_others: OBSOLETE.
Definition cv.hpp:4389
MS_TSQ_7000
TSQ 7000: ThermoFinnigan TSQ 7000 MS.
Definition cv.hpp:2916
MS_IonSpec_instrument_model
IonSpec instrument model: IonSpec corporation instrument model.
Definition cv.hpp:708
MS_peptide_exon_nucleotide_sizes
peptide exon nucleotide sizes: A comma separated list of the number of DNA bases within each exon to ...
Definition cv.hpp:8382
UNIMOD_Phosphopantetheine
Phosphopantetheine: Phosphopantetheine.
Definition cv.hpp:9489
UO_image_resolution_unit
image resolution unit: An information unit which is a standard measure of the detail an image holds.
Definition cv.hpp:14505
MS_ProteomeDiscoverer_Reporter_Ions_Quantizer_Integration_Method
ProteomeDiscoverer:Reporter Ions Quantizer:Integration Method: Specifies which peak to select if more...
Definition cv.hpp:5508
UNIMOD_EGCG2
EGCG2: (-)-dehydroepigallocatechin.
Definition cv.hpp:11289
UO_gram_per_liter
gram per liter: A mass unit density which is equal to mass of an object in grams divided by the volum...
Definition cv.hpp:14322
UNIMOD_DyLight_maleimide
DyLight-maleimide: Thiol-reactive dye for fluorescence labelling of proteins.
Definition cv.hpp:11058
MS_SEQUEST_expectation_value
SEQUEST:expectation value: The SEQUEST result 'Expectation value'.
Definition cv.hpp:3936
MS_experimental_condition__healthy_
experimental condition 'healthy': The experimental condition is 'healthy' in contrast to 'disease'.
Definition cv.hpp:5853
UNIMOD_dHex_2_Hex_3_HexNAc_2_NeuGc_1_
dHex(2)Hex(3)HexNAc(2)NeuGc(1): DHex(2) Hex(3) HexNAc(2) NeuGc —OR— Hex(4) HexNAc(2) dHex NeuAc.
Definition cv.hpp:13197
MS_acquisition_software
acquisition software: Acquisition software.
Definition cv.hpp:4764
MS_LTQ_Orbitrap_Elite
LTQ Orbitrap Elite: Thermo Scientific second generation Velos and Orbitrap.
Definition cv.hpp:6144
MS_mzML_format
mzML format: Proteomics Standards Inititative mzML file format.
Definition cv.hpp:2403
MS_Morpheus_Morpheus_score
Morpheus:Morpheus score: Morpheus score for PSMs.
Definition cv.hpp:8445
UNIMOD_FTC
FTC: Fluorescein-5-thiosemicarbazide.
Definition cv.hpp:10281
MS_Bruker_Daltonics_EVOQ_series
Bruker Daltonics EVOQ series: Bruker Daltonics' EVOQ series.
Definition cv.hpp:7332
UNIMOD_GIST_Quat_2H_6_
GIST-Quat:2H(6): Quaternary amine labeling reagent heavy form (+6amu), N-term & K.
Definition cv.hpp:9525
UNIMOD_Hex_2_HexNAc_3_NeuAc_1_NeuGc_1_
Hex(2)HexNAc(3)NeuAc(1)NeuGc(1): Hex(2) HexNAc(3) NeuAc NeuGc.
Definition cv.hpp:13212
UNIMOD_dHex_1_Hex_6_HexNAc_3_
dHex(1)Hex(6)HexNAc(3): DHex Hex(6) HexNAc(3).
Definition cv.hpp:12612
UNIMOD_Glu__Cys
Glu->Cys: Glu->Cys substitution.
Definition cv.hpp:11490
UO_square_angstrom
square angstrom: An area unit which is equal to an area enclosed by a square with sides each 1 angstr...
Definition cv.hpp:14769
MS_ChromaTOF_software
ChromaTOF software: Software for acquisition, processing and analysis of data for LECO instruments.
Definition cv.hpp:5811
MS_MS_Numpress_linear_prediction_compression
MS-Numpress linear prediction compression: Compression using MS-Numpress linear prediction compressio...
Definition cv.hpp:7386
UNIMOD_EQAT
EQAT: EAPTA d0.
Definition cv.hpp:9756
MS_TopPIC_mod_file
TopPIC:mod file: The text file containing the information of common PTMs.
Definition cv.hpp:9198
MS_Accela_PDA
Accela PDA: Accela PDA.
Definition cv.hpp:2535
UNIMOD_VIEVYQEQTGG
VIEVYQEQTGG: SUMOylation by SUMO-1 (formic acid cleavage).
Definition cv.hpp:11139
UNIMOD_AEBS
AEBS: Aminoethylbenzenesulfonylation.
Definition cv.hpp:9849
MS_Synapt_G2_MS
Synapt G2 MS: Waters oa-ToF based Synapt G2 MS.
Definition cv.hpp:5748
MS_family_member_protein
family member protein: A protein with significant homology to another protein, but some distinguishin...
Definition cv.hpp:5190
MS_Progenesis_protein_group_normalised_abundance
Progenesis:protein group normalised abundance: The data type normalised abundance for protein groups ...
Definition cv.hpp:8004
MS_software
software: Software related to the recording or transformation of spectra.
Definition cv.hpp:2199
PEFF_SequenceType
SequenceType: Molecular type of the sequences.
Definition cv.hpp:156
UNIMOD_Cation_Ca_II_
Cation:Ca[II]: Replacement of 2 protons by calcium.
Definition cv.hpp:11190
MS_ESI
ESI (electrospray ionization): A process in which ionized species in the gas phase are produced from ...
Definition cv.hpp:510
MS_Progeny_Fragment_Ion_OBSOLETE
Progeny Fragment Ion (progeny ion): A charged product of a series of consecutive reactions that inclu...
Definition cv.hpp:1605
UNIMOD_Label_2H_10_
Label:2H(10): 2H(10) label.
Definition cv.hpp:12111
UNIMOD_Oxidation
Oxidation: Oxidation or Hydroxylation.
Definition cv.hpp:9450
MS_LTQ_FT_Ultra
LTQ FT Ultra: LTQ FT Ultra.
Definition cv.hpp:2280
MS_PQD
PQD (pulsed q dissociation): A process that involves precursor ion activation at high Q,...
Definition cv.hpp:2457
MS_peptide_sequence_level_global_FDR
peptide sequence-level global FDR: Estimation of the global false discovery rate for distinct peptide...
Definition cv.hpp:4500
MS_modification_specificity_protein_N_term
modification specificity protein N-term: As parameter for search engine: apply the modification only ...
Definition cv.hpp:6621
MS_TissueView_Software
TissueView Software: Applied Biosystems|MDS SCIEX software for tissue imaging.
Definition cv.hpp:2661
MS_isotopomer_MS_peak
isotopomer MS peak: The described isotopomer mass spectrometric signal. The value slot contains a des...
Definition cv.hpp:9294
MS_LCQ_Deca_XP_Plus
LCQ Deca XP Plus: ThermoFinnigan LCQ Deca XP Plus MS.
Definition cv.hpp:873
UO_percent
percent: A dimensionless ratio unit which denotes numbers as fractions of 100.
Definition cv.hpp:14358
MS_metabolic_labeling_14N___15N_quantitation_analysis
metabolic labeling 14N / 15N quantitation analysis: Metabolic labeling workflow (heavy and light vers...
Definition cv.hpp:5931
UNIMOD_dHex_2_Hex_4_HexNAc_4_
dHex(2)Hex(4)HexNAc(4): DHex(2) Hex(4) HexNAc(4) —OR— Hex(4) HexNAc(4) dHex Pent Me.
Definition cv.hpp:13377
MS_collision_energy
collision energy: Energy for an ion experiencing collision with a stationary gas particle resulting i...
Definition cv.hpp:411
UNIMOD_Hex_1_HexNAc_2_dHex_1_Pent_1_
Hex(1)HexNAc(2)dHex(1)Pent(1): Hex1HexNAc2dHex1Pent1.
Definition cv.hpp:9690
UNIMOD_Dioxidation
Dioxidation: Dihydroxy.
Definition cv.hpp:10185
MS_ProteomeDiscoverer_Spectrum_Selector_Precursor_Clipping_Range_Before
ProteomeDiscoverer:Spectrum Selector:Precursor Clipping Range Before: Precursor clipping range before...
Definition cv.hpp:6690
UNIMOD_Met__Hsl
Met->Hsl: Homoserine lactone.
Definition cv.hpp:9402
MS_Q1_spectrum
Q1 spectrum (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stage ...
Definition cv.hpp:2355
UO_acceleration_unit
acceleration unit: A unit which is a standard measure of the rate of change of velocity in either spe...
Definition cv.hpp:13947
MS_moving_wire
moving wire: Continuous moving surface in the form of a wire which passes through an ion source carry...
Definition cv.hpp:471
MS_ionizing_collision_OBSOLETE
ionizing collision: The reaction of an ion with a neutral species in which one or more electrons are ...
Definition cv.hpp:1854
UO_megavolt
megavolt: An electric potential difference unit which is equal to one million volts or 10^[6] V.
Definition cv.hpp:14553
MS_MassIVE_dataset_identifier
MassIVE dataset identifier: Dataset identifier issued by the MassIVE repository. A dataset can refer ...
Definition cv.hpp:7911
MS_spark_ionization
spark ionization: The formation of ions from a solid material by an intermittent electrical discharge...
Definition cv.hpp:1785
MS_pressure_array
pressure array: A data array of pressure measurements.
Definition cv.hpp:3162
UNIMOD_Gly__Thr
Gly->Thr: Gly->Thr substitution.
Definition cv.hpp:11589
MS_sequence_level_spectral_count
sequence-level spectral count: The number of MS2 spectra identified for a raw peptide sequence withou...
Definition cv.hpp:5940
MS_frag__c_ion___NH3
frag: c ion - NH3: Fragmentation information, type of product: c ion without ammonia.
Definition cv.hpp:4953
MS_EVOQ_Elite
EVOQ Elite: Bruker Daltonics' EVOQ Elite: LC-triple quadrupole.
Definition cv.hpp:7341
MS_spectrum_from_database_integer_nativeID_format
spectrum from database integer nativeID format: Native format defined by databasekey=xsd:long.
Definition cv.hpp:4983
UO_exposure_unit
exposure unit: A unit which is a standard measure of the quantity that expresses the ability of radia...
Definition cv.hpp:14193
MS_CF_FAB
CF-FAB (continuous flow fast atom bombardment): Fast atom bombardment ionization in which the analyte...
Definition cv.hpp:444
MS_inverse_reduced_ion_mobility
inverse reduced ion mobility: Ion mobility measurement for an ion or spectrum of ions as measured in ...
Definition cv.hpp:8868
MS_distinct_peptide_level_combined_FDRScore
distinct peptide-level combined FDRScore: Combined FDRScore for peptides once redundant identificatio...
Definition cv.hpp:7533
UNIMOD_dHex_1_Hex_3_HexNAc_4_Sulf_1_
dHex(1)Hex(3)HexNAc(4)Sulf(1): DHex Hex(3) HexNAc(4) Sulf.
Definition cv.hpp:12513
MS_constant_neutral_gain_scan_OBSOLETE
constant neutral gain scan: Spectrum of all precursor ions that undergo a selected m/z increment.
Definition cv.hpp:1533
MS_LECO_instrument_model
LECO instrument model: LECO instrument model.
Definition cv.hpp:5814
UO_katal_per_liter
katal per liter: A catalytic (activity) concentration unit which is equal to 1 katal activity of a ca...
Definition cv.hpp:14409
UNIMOD_Lys__Phe
Lys->Phe: Lys->Phe substitution.
Definition cv.hpp:11655
MS_7800_Quadrupole_ICP_MS
7800 Quadrupole ICP-MS: The 7800 Quadrupole ICP-MS system is a Agilent inductively couple plasma inst...
Definition cv.hpp:8832
UNIMOD_Delta_H_2_C_5_
Delta:H(2)C(5): MDA adduct +62.
Definition cv.hpp:9939
MS_protein_group_level_confidence
protein group-level confidence: Estimation of the global confidence of protein groups.
Definition cv.hpp:7833
MS_MzWiff
MzWiff: A software program for converting Applied Biosystems wiff file format to the mzXML or mzML fo...
Definition cv.hpp:2424
MS_TOPP_FeatureFinderIsotopeWavelet
TOPP FeatureFinderIsotopeWavelet: Detects two-dimensional features in uncentroided LC-MS data with a ...
Definition cv.hpp:6951
MS_max_fold_change
max fold change: Global datatype: Maximum of all pair-wise fold changes of group means (e....
Definition cv.hpp:5973
MS_SCiLS_Lab
SCiLS Lab: SCiLS Lab software.
Definition cv.hpp:7602
MS_LTQ_XL
LTQ XL: Thermo Scientific LTQ XL MS.
Definition cv.hpp:3258
UNIMOD_LRGG_dimethyl
LRGG+dimethyl: LeudimethylArgGlyGly.
Definition cv.hpp:13434
UNIMOD_Lys__CamCys
Lys->CamCys: Lys->Cys substitution and carbamidomethylation.
Definition cv.hpp:11091
UNIMOD_dHex_1_Hex_4_HexNAc_3_NeuGc_1_
dHex(1)Hex(4)HexNAc(3)NeuGc(1): DHex Hex(4) HexNAc(3) NeuGc —OR— Hex(5) HexNAc(3) NeuAc.
Definition cv.hpp:12603
MS_Byonic_Best_Score
Byonic:Best Score: Best (largest) Byonic score of a PSM.
Definition cv.hpp:7254
MS_param__b_ion_H2O_DEPRECATED
param: b ion-H2O DEPRECATED: Ion b-H2O if b significant and fragment includes STED.
Definition cv.hpp:3909
UNIMOD_Arg__Tyr
Arg->Tyr: Arg->Tyr substitution.
Definition cv.hpp:11835
UNIMOD_Ethylphosphate
Ethylphosphate: O-Ethylphosphorylation.
Definition cv.hpp:10845
MS_no_cleavage
no cleavage: No cleavage.
Definition cv.hpp:6288
UNIMOD_Arg__Lys
Arg->Lys: Arg->Lys substitution.
Definition cv.hpp:10674
MS_Bruker_Daltonics_apex_series
Bruker Daltonics apex series: Bruker Daltonics' apex series.
Definition cv.hpp:5067
MS_6530A_Q_TOF_LC_MS
6530A Q-TOF LC/MS: The 6530A Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instr...
Definition cv.hpp:8778
MS_TopMG_spectral_FDR
TopMG:spectral FDR: TopMG spectrum-level FDR.
Definition cv.hpp:9276
UNIMOD_Hex_10_HexNAc_1_
Hex(10)HexNAc(1): Hex(10) HexNAc(1).
Definition cv.hpp:13728
MS_LipidFinder
LipidFinder: A computational workflow for the discovery of lipids for the identification of eicosanoi...
Definition cv.hpp:9342
MS_translation_table
translation table: The translation table used to translate the nucleotides to amino acids.
Definition cv.hpp:3573
MS_first_column_elution_time
first column elution time: The time of elution from the first chromatographic column in the chromatog...
Definition cv.hpp:6696
UO_microcurie
microcurie: An activity (of a radionuclide) unit which is equal to one millionth of a curie or 10^[-6...
Definition cv.hpp:14238
UNIMOD_Glu__Thr
Glu->Thr: Glu->Thr substitution.
Definition cv.hpp:11517
MS_time_delayed_fragmentation_spectrum
time-delayed fragmentation spectrum: MSn spectrum in which the product ions are collected after a tim...
Definition cv.hpp:3057
MS_TOPP_MascotAdapter
TOPP MascotAdapter: Identifies MS2 spectra using the external program Mascot.
Definition cv.hpp:6993
MS_data_processing_parameter
data processing parameter: Data processing parameter used in the data processing performed on the dat...
Definition cv.hpp:2562
MS_adduct_ion
adduct ion: Ion formed by the interaction of an ion with one or more atoms or molecules to form an io...
Definition cv.hpp:1632
UNIMOD_Dansyl
Dansyl: 5-dimethylaminonaphthalene-1-sulfonyl.
Definition cv.hpp:9642
UO_parts_per_quadrillion
parts per quadrillion: A dimensionless concentration notation which denotes the amount of a given sub...
Definition cv.hpp:14313
MS_MAT253
MAT253: ThermoFinnigan MAT253 MS.
Definition cv.hpp:882
MS_DB_sequence_filter_pattern
DB sequence filter pattern: DB sequence filter pattern.
Definition cv.hpp:4944
MS_quality_estimation_with_implicite_decoy_sequences
quality estimation with implicite decoy sequences: Decoy entries are generated during the search,...
Definition cv.hpp:4761
MS_OpenXQuest_xcorr_common
OpenXQuest:xcorr common: OpenXQuest's cross-correlation of unlinked ions subscore.
Definition cv.hpp:8508
MS_Panorama_Public_dataset_identifier
Panorama Public dataset identifier: Dataset identifier issued by the Panorama Public repository....
Definition cv.hpp:9039
MS_MS_GFDB
MS-GFDB (MS-GF+): MS-GF+ software used to analyze the spectra.
Definition cv.hpp:6594
MS_ProteomeDiscoverer_Mascot_Please_Do_not_Touch_this
ProteomeDiscoverer:Mascot:Please Do not Touch this: Unknown Mascot parameter which ProteomeDiscoverer...
Definition cv.hpp:5676
UNIMOD_Phe__Val
Phe->Val: Phe->Val substitution.
Definition cv.hpp:10488
UNIMOD_Methyl
Methyl: Methylation.
Definition cv.hpp:9447
MS_source_sprayer_model
source sprayer model: The source sprayer model.
Definition cv.hpp:6228
MS_pepXML_format
pepXML format: The XML-based pepXML file format for encoding PSM information, created and maintained ...
Definition cv.hpp:4662
MS_Paragon_score
Paragon:score: The Paragon result 'Score'.
Definition cv.hpp:3957
MS_CAMERA
CAMERA: Bioconductor package CAMERA for annotation of peak lists generated by xcms,...
Definition cv.hpp:9036
UNIMOD_Asn__Glu
Asn->Glu: Asn->Glu substitution.
Definition cv.hpp:11724
PEFF_DbDescription
DbDescription: Sequence Database Short description.
Definition cv.hpp:135
MS_Panorama_Public_dataset_URI
Panorama Public dataset URI: URI that allows the access to one dataset in the Panorama Public reposit...
Definition cv.hpp:9042
MS_PMT
PMT (photomultiplier): A detector for conversion of the ion/electron signal into photon(s) which are ...
Definition cv.hpp:681
UO_linear_density_unit
linear density unit: A density unit which is a standard measure of the mass exerting an influence on ...
Definition cv.hpp:14346
PEFF_DbDate_OBSOLETE
DbDate: Database date (release or file date of the source) according to database provider.
Definition cv.hpp:147
MS_IdentityE_Score
IdentityE Score: Waters IdentityE peptide score.
Definition cv.hpp:5106
MS_TOPP_ProteinInference
TOPP ProteinInference: Infer proteins from a list of (high-confidence) peptides.
Definition cv.hpp:7056
MS_smoothing
smoothing: A process of reducing spikes of intensity in order to reduce noise while preserving real p...
Definition cv.hpp:2427
UNIMOD_RNPXL
RNPXL: Simulate peptide-RNA conjugates.
Definition cv.hpp:13422
MS_ProteomeDiscoverer_Non_Fragment_Filter_Remove_Charge_Reduced_Precursor
ProteomeDiscoverer:Non-Fragment Filter:Remove Charge Reduced Precursor: Determines whether the charge...
Definition cv.hpp:5286
MS_Maui
Maui: The Maltcms Graphical User Interface.
Definition cv.hpp:7806
MS_QSTAR
QSTAR: Applied Biosystems/MDS SCIEX QSTAR MS.
Definition cv.hpp:936
MS_LCQ_Classic
LCQ Classic: ThermoFinnigan LCQ Classic MS.
Definition cv.hpp:870
UNIMOD_HexNAc_2_NeuAc_1_Sulf_1_
HexNAc(2)NeuAc(1)Sulf(1): HexNAc(2) NeuAc Sulf.
Definition cv.hpp:12825
MS_PeptideShaker_peptide_confidence_type
PeptideShaker peptide confidence type: PeptideShaker quality criteria for the confidence of peptide i...
Definition cv.hpp:8076
MS_autoflex_III_smartbeam
autoflex III smartbeam: Bruker Daltonics' autoflex III smartbeam: MALDI TOF.
Definition cv.hpp:2757
MS_ProteomeDiscoverer_SEQUEST_Low_resolution_spectra_contained
ProteomeDiscoverer:SEQUEST:Low resolution spectra contained: Flag indicating if low-resolution spectr...
Definition cv.hpp:7146
MS_scan_number_only_nativeID_format
scan number only nativeID format: Native format defined by scan=xsd:nonNegativeInteger.
Definition cv.hpp:3000
MS_ICPL_reagent_10
ICPL reagent 10: The name of the sample labelled with the ICPL reagent 10.
Definition cv.hpp:8283
MS_wolf
wolf (massWolf): A software for converting Waters raw directory format to mzXML or mzML....
Definition cv.hpp:2223
MS_pre_ionization_state_OBSOLETE
pre-ionization state: An electronic state capable of undergoing auto-Ionization.
Definition cv.hpp:1776
MS_autoionization
autoionization: The formation of an ion when an atom or molecule in a discrete state with an energy g...
Definition cv.hpp:1725
MS_proteogenomics_attribute
proteogenomics attribute: Proteogenomics attribute.
Definition cv.hpp:8364
UNIMOD_Tyr__Asn
Tyr->Asn: Tyr->Asn substitution.
Definition cv.hpp:10794
MS_ion_to_photon_detector
ion-to-photon detector: A detector in which ions strike a conversion dynode to produce electrons that...
Definition cv.hpp:1620
UNIMOD_dHex_1_Hex_5_HexNAc_5_
dHex(1)Hex(5)HexNAc(5): DHex Hex(5) HexNAc(5).
Definition cv.hpp:12750
UNIMOD_Gly__Met
Gly->Met: Gly->Met substitution.
Definition cv.hpp:11577
MS_TOFCalibration
TOFCalibration: Applies time of flight calibration.
Definition cv.hpp:2967
MS_beam_type_collision_induced_dissociation
beam-type collision-induced dissociation: A collision-induced dissociation process that occurs in a b...
Definition cv.hpp:1839
UNIMOD_Unknown_162
Unknown:162: Unidentified modification of 162.1258 found in open search.
Definition cv.hpp:13752
MS_BioTOF_Q
BioTOF-Q: Bruker Daltonics' BioTOF-Q: ESI Q-TOF.
Definition cv.hpp:822
MS_CNBr
CNBr: Cyanogen bromide.
Definition cv.hpp:4329
UNIMOD_Xlink_DTSSP_192_
Xlink:DTSSP[192]: Water quenched monolink of DSP/DTSSP crosslinker.
Definition cv.hpp:11340
UNIMOD_Lys__Gln
Lys->Gln: Lys->Gln substitution.
Definition cv.hpp:10548
MS_TMT_reagent_130
TMT reagent 130: The name of the sample labelled with the TMT reagent 130.
Definition cv.hpp:8313
UNIMOD_dHex_3_Hex_2_HexNAc_4_
dHex(3)Hex(2)HexNAc(4): DHex(3) Hex(2) HexNAc(4).
Definition cv.hpp:13236
UO_lux
lux: An illuminance unit which is equal to the illuminance produced by 1 lumen evenly spread over an ...
Definition cv.hpp:14151
MS_exponential
exponential: The mass scan is done in exponential mode.
Definition cv.hpp:597
UNIMOD_dHex_1_Hex_4_HexNAc_1_Pent_1_
dHex(1)Hex(4)HexNAc(1)Pent(1): DHex Hex(4) HexNAc Pent.
Definition cv.hpp:12444
MS_4800_Plus_MALDI_TOF_TOF
4800 Plus MALDI TOF/TOF: SCIEX or Applied Biosystems|MDS SCIEX 4800 Plus MALDI TOF-TOF Analyzer.
Definition cv.hpp:2628
MS_MassHunter_Data_Acquisition
MassHunter Data Acquisition: Software for data acquisition of 6000 series instruments.
Definition cv.hpp:2703
MS_TOPP_IDRTCalibration
TOPP IDRTCalibration: Calibrate Retention times of peptide hits to standards.
Definition cv.hpp:7026
MS_modified_peptide_sequence
modified peptide sequence: A sequence of letter symbols denoting the order of amino acids that compos...
Definition cv.hpp:3369
MS_SEQUEST_sort_by_XCorr
SEQUEST:sort by XCorr: Sort order of SEQUEST search results by the correlation score.
Definition cv.hpp:3717
UNIMOD_Hex_1_HexNAc_2_NeuAc_1_
Hex(1)HexNAc(2)NeuAc(1): Hex HexNAc(2) NeuAc.
Definition cv.hpp:12876
UNIMOD_Puromycin
Puromycin: Puromycin.
Definition cv.hpp:11232
UNIMOD_Asp__Tyr
Asp->Tyr: Asp->Tyr substitution.
Definition cv.hpp:10449
MS_ProteomeDiscoverer_SRF_File_Selector_SRF_File_Path_OBSOLETE
ProteomeDiscoverer:SRF File Selector:SRF File Path: Path and name of the .srf (SEQUEST Result Format)...
Definition cv.hpp:5220
MS_Electron_Transfer_Higher_Energy_Collision_Dissociation__EThcD_
Electron-Transfer/Higher-Energy Collision Dissociation (EThcD): A dissociation process combining elec...
Definition cv.hpp:8346
MS_TopPIC_shift_num
TopPIC:shift num: Maximum number of unexpected modifications in a proteoform spectrum match.
Definition cv.hpp:9177
UO_milligram
milligram: A mass unit which is equal to one thousandth of a gram or 10^[-3] g.
Definition cv.hpp:13869
UNIMOD_Hex_3_HexNAc_6_NeuAc_1_
Hex(3)HexNAc(6)NeuAc(1): Hex(3) HexNAc(6) NeuAc.
Definition cv.hpp:12768
UNIMOD_Xlink_DSSO_279_
Xlink:DSSO[279]: Tris-quenched monolink of DSSO crosslinker.
Definition cv.hpp:13515
MS_6495B_Triple_Quadrupole_LC_MS
6495B Triple Quadrupole LC/MS: The 6495B Quadrupole LC/MS system is a Agilent liquid chromatography i...
Definition cv.hpp:8823
MS_LTQ_Orbitrap_Velos
LTQ Orbitrap Velos: Finnigan LTQ Orbitrap Velos MS.
Definition cv.hpp:5640
MS_ms_level
ms level: Stages of ms achieved in a multi stage mass spectrometry experiment.
Definition cv.hpp:2139
UNIMOD_Ala__Gln
Ala->Gln: Ala->Gln substitution.
Definition cv.hpp:11409
UNIMOD_Iodo
Iodo: Iodination.
Definition cv.hpp:9621
MS_TOPP_MzTabExporter
TOPP MzTabExporter: Exports various XML formats to an mzTab file.
Definition cv.hpp:6921
MS_TOPP_PepNovoAdapter
TOPP PepNovoAdapter: Identifies MS2 spectra using the external program PepNovo.
Definition cv.hpp:7002
MS_ProteinLynx_Log_Likelihood
ProteinLynx:Log Likelihood: ProteinLynx log likelihood score.
Definition cv.hpp:5109
MS_Bruker_BAF_nativeID_format
Bruker BAF nativeID format: Native format defined by scan=xsd:nonNegativeInteger.
Definition cv.hpp:2988
MS_ProteomeDiscoverer_3__Dynamic_Modification_OBSOLETE
ProteomeDiscoverer:3. Dynamic Modification: ProteomeDiscoverer's 3rd dynamic post-translational modif...
Definition cv.hpp:5580
UNIMOD_dHex_2_Hex_4_HexNAc_4_Sulf_1_
dHex(2)Hex(4)HexNAc(4)Sulf(1): DHex(2) Hex(4) HexNAc(4) Sulf.
Definition cv.hpp:12654
MS_LTQ_XL_ETD
LTQ XL ETD: Thermo Scientific LTQ XL MS with ETD.
Definition cv.hpp:2586
MS_SSQ_7000
SSQ 7000: ThermoFinnigan SSQ 7000 MS.
Definition cv.hpp:2913
MS_Bruker_Daltonics_flex_series
Bruker Daltonics flex series: Bruker Daltonics' flex series.
Definition cv.hpp:5007
MS_ProteomeDiscoverer_Enzyme_Name_OBSOLETE
ProteomeDiscoverer:Enzyme Name: Specifies the enzyme reagent used for protein digestion.
Definition cv.hpp:5376
MS_compact
compact: Bruker Daltonics' compact: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.
Definition cv.hpp:7287
UO_volume_unit
volume unit: A unit which is a standard measure of the amount of space occupied by any substance,...
Definition cv.hpp:14088
UNIMOD_Tyr__Gly
Tyr->Gly: Tyr->Gly substitution.
Definition cv.hpp:11970
MS_FAIMS_CV
FAIMS CV (FAIMS compensation voltage): The DC potential applied to the asymmetric waveform in FAIMS t...
Definition cv.hpp:5145
UO_radiance_unit
radiance unit: A unit which is a standard measure of the power of electromagnetic radiation through s...
Definition cv.hpp:14280
MS_dissociative_ionization
dissociative ionization: The reaction of a gas-phase molecule that results in its decomposition to fo...
Definition cv.hpp:1737
MS_study_variable_attribute
study variable attribute: Attribute describing a study variable.
Definition cv.hpp:5835
MS_MALDI
MALDI (matrix-assisted laser desorption ionization): The formation of gas-phase ions from molecules t...
Definition cv.hpp:522
MS_intermediate_analysis_format
intermediate analysis format: Type of the source file, the mzIdentML was created from.
Definition cv.hpp:3609
UNIMOD_Hex_3_HexNAc_1_Pent_1_
Hex(3)HexNAc(1)Pent(1): Hex3HexNAc1Pent1.
Definition cv.hpp:9687
UO_square_centimeter
square centimeter: An area unit which is equal to one ten thousandth of a square meter or 10^[-4] m^[...
Definition cv.hpp:14046
UNIMOD_Hex_1_HexNAc_3_NeuGc_1_
Hex(1)HexNAc(3)NeuGc(1): Hex HexNAc(3) NeuGc.
Definition cv.hpp:12975
MS_cross_linking_search
cross-linking search: Cross-linking search performed.
Definition cv.hpp:7932
MS_MSPathFinder_RawScore
MSPathFinder:RawScore: MSPathFinder raw score.
Definition cv.hpp:8595
MS_TSQ_Quantiva
TSQ Quantiva: Thermo Scientific TSQ Quantiva MS.
Definition cv.hpp:7704
MS_RGA_OBSOLETE
RGA (residual gas analyzer): A mass spectrometer used to measure the composition and pressure of gass...
Definition cv.hpp:1362
MS_Acquity_TQD
Acquity TQD: Waters quadrupole based Acquity TQD.
Definition cv.hpp:5778
MS_u_OBSOLETE
u (unified atomic mass unit): A non-SI unit of mass (u) defined as one twelfth of ^12 C in its ground...
Definition cv.hpp:1119
UNIMOD_biotinAcrolein298
biotinAcrolein298: Biotin hydrazide labeled acrolein addition +298.
Definition cv.hpp:12144
MS_frag__z_1_ion
frag: z+1 ion: Fragmentation information, type of product: z+1 ion.
Definition cv.hpp:4509
UNIMOD_Ser__Trp
Ser->Trp: Ser->Trp substitution.
Definition cv.hpp:10701
UO_quarter
quarter: An imperial mass unit which is equivalent to 12.700,586,36 kilograms, or 28 pounds.
Definition cv.hpp:14901
MS_data_file_checksum_type
data file checksum type: Checksum is a form of redundancy check, a simple way to protect the integrit...
Definition cv.hpp:2292
MS_embl_em
embl em: EMBL entry format.
Definition cv.hpp:4464
MS_ProteomeDiscoverer_Mascot_Peptide_CutOff_Score
ProteomeDiscoverer:Mascot:Peptide CutOff Score: Minimum score in the IonScore column that each peptid...
Definition cv.hpp:5388
MS_DiART_reagent_117
DiART reagent 117: The name of the sample labelled with the DiART reagent 117.
Definition cv.hpp:8745
UNIMOD_Xlink_DTSSP_174_
Xlink:DTSSP[174]: Intact DSP/DTSSP crosslinker.
Definition cv.hpp:13560
MS_mzidLib_Thresholder
mzidLib:Thresholder: A routine for keeping only identifications passing a given threshold or setting ...
Definition cv.hpp:7173
MS_sample_plate_type
sample plate type: The sample plate type.
Definition cv.hpp:6234
MS_Phenyx_Conflict_Resolution
Phenyx:Conflict Resolution: The parameter in Phenyx that specifies if the conflict resolution algorit...
Definition cv.hpp:4569
MS_Bruker_Daltonics_instrument_model
Bruker Daltonics instrument model: Bruker Daltonics' instrument model.
Definition cv.hpp:705
MS_ProteomeDiscoverer_SEQUEST_NTerminal_Modification
ProteomeDiscoverer:SEQUEST:NTerminal Modification: Dynamic N-terminal modification that is used durin...
Definition cv.hpp:5445
UO_millimeters_per_day
millimeters per day: A speed/velocity unit which is equal to the speed of an object traveling 1 milli...
Definition cv.hpp:14808
MS_Comet_matched_ions
Comet:matched ions: The Comet result 'Matched Ions'.
Definition cv.hpp:7221
UNIMOD_Hex_1_NeuAc_1_
Hex(1)NeuAc(1): Hex NeuAc —OR— HexNAc Kdn.
Definition cv.hpp:12378
MS_no_modification_threshold
no modification threshold: No statistical threshold for accepting or rejecting that a modification po...
Definition cv.hpp:8475
UNIMOD_dHex_1_Hex_4_HexNAc_2_Pent_1_
dHex(1)Hex(4)HexNAc(2)Pent(1): DHex Hex(4) HexNAc(2) Pent.
Definition cv.hpp:12462
MS_TSQ
TSQ: ThermoFinnigan TSQ MS.
Definition cv.hpp:2919
MS_Mascot_Parser
Mascot Parser: Mascot Parser was used to analyze the spectra.
Definition cv.hpp:4839
UNIMOD_Asp__Val
Asp->Val: Asp->Val substitution.
Definition cv.hpp:10455
UNIMOD_Cytopiloyne
Cytopiloyne: Nucleophilic addtion to cytopiloyne.
Definition cv.hpp:9837
MS_Expect_value
Expect value: Result of quality estimation: Expect value.
Definition cv.hpp:4011
MS_X_Tandem_hyperscore
X!Tandem:hyperscore: The X!Tandem hyperscore.
Definition cv.hpp:4401
UNIMOD_BEMAD_ST_2H_6_
BEMAD_ST:2H(6): Beta elimination of modified S or T followed by Michael addition of labelled DTT.
Definition cv.hpp:10914
UNIMOD_Thiazolidine
Thiazolidine: Formaldehyde adduct.
Definition cv.hpp:11307
MS_TopPIC_generating_function
TopPIC:generating function: P-value and E-value estimation using generating function.
Definition cv.hpp:9192
UO_absorbed_dose_unit
absorbed dose unit: A unit which is a standard measure of the energy imparted by ionizing radiation t...
Definition cv.hpp:14187
UNIMOD_Acetyl_2H_3_
Acetyl:2H(3): Acetate labeling reagent (N-term & K) (heavy form, +3amu).
Definition cv.hpp:9510
MS_Constant_Neutral_Mass_Gain_Scan_OBSOLETE
Constant Neutral Mass Gain Scan (constant neutral gain scan): Spectrum of all precursor ions that und...
Definition cv.hpp:1536
UNIMOD_Val__Cys
Val->Cys: Val->Cys substitution.
Definition cv.hpp:11892
MS_Phenyx_Default_Parent_Charge
Phenyx:Default Parent Charge: The default parent charge value in Phenyx.
Definition cv.hpp:4539
UNIMOD_Pro__Xle
Pro->Xle: Pro->Leu/Ile substitution.
Definition cv.hpp:10641
UNIMOD_Asn__Trp
Asn->Trp: Asn->Trp substitution.
Definition cv.hpp:11748
MS_electrostatic_energy_analyzer
electrostatic energy analyzer: A device consisting of conducting parallel plates, concentric cylinder...
Definition cv.hpp:1218
MS_DIP
DIP (direct insertion probe): A device for introducing a solid or liquid sample into a mass spectrome...
Definition cv.hpp:1185
UNIMOD_GeranylGeranyl
GeranylGeranyl: Geranyl-geranyl.
Definition cv.hpp:9486
MS_TOPP_PeptideIndexer
TOPP PeptideIndexer: Refreshes the protein references for all peptide hits.
Definition cv.hpp:7029
UNIMOD_Hex_3_HexNAc_3_NeuAc_1_
Hex(3)HexNAc(3)NeuAc(1): Hex(3) HexNAc(3) NeuAc —OR— Hex(2) HexNAc(3) dHex NeuGc —OR— Hex(2) HexNAc(4...
Definition cv.hpp:13134
MS_SEQUEST_selectCV
SEQUEST:selectCV: SEQUEST Select Input Parameters.
Definition cv.hpp:3843
MS_multiple_ion_monitoring_OBSOLETE
multiple ion monitoring: Data acquired when monitoring the ion current of a few specific m/z values....
Definition cv.hpp:609
MS______KR__
(?<=[KR]): Regular expression for Trypsin/P.
Definition cv.hpp:4425
MS_TopMG_variable_PTM_number_in_proteoform_graph_gap
TopMG:variable PTM number in proteoform graph gap: Maximum number of variable PTMs in a proteoform gr...
Definition cv.hpp:9267
MS_channeltron
channeltron: A horn-shaped (or cone-shaped) continuous dynode particle multiplier....
Definition cv.hpp:639
MS_6490_Triple_Quadrupole_LC_MS
6490 Triple Quadrupole LC/MS: The 6490 Quadrupole LC/MS system is a Agilent liquid chromatography ins...
Definition cv.hpp:7788
UNIMOD_Thr__Ser
Thr->Ser: Thr->Ser substitution.
Definition cv.hpp:10728
MS_XPRESS
XPRESS: A program in the TPP that calculates PSM-level abundances based on 2-channel isotope-labelled...
Definition cv.hpp:7320
UNIMOD_Glu__His
Glu->His: Glu->His substitution.
Definition cv.hpp:11496
UNIMOD_mTRAQ_13C_6_15N_2_
mTRAQ:13C(6)15N(2): MTRAQ heavy.
Definition cv.hpp:12120
MS_electron_volt_OBSOLETE
electron volt: A non-SI unit of energy (eV) defined as the energy acquired by a particle containing o...
Definition cv.hpp:777
MS_6150_Quadrupole_LC_MS
6150 Quadrupole LC/MS: The 6150 Quadrupole LC/MS system is a Agilent liquid chromatography instrument...
Definition cv.hpp:8805
UNIMOD_Hex_5_Phos_1_
Hex(5)Phos(1): Hex(5) Phos.
Definition cv.hpp:12882
UO_kibibyte
kibibyte: An information unit which is equal to 1024 B.
Definition cv.hpp:14532
UO_newton
newton: A force unit which is equal to the force required to cause an acceleration of 1m/s2 of a mass...
Definition cv.hpp:14127
MS_data_file_content
data file content: Describes the data content on the file.
Definition cv.hpp:2178
MS_TOPP_MassTraceExtractor
TOPP MassTraceExtractor: Annotates mass traces in centroided LC/MS maps.
Definition cv.hpp:6924
MS_QSTAR_Pulsar
QSTAR Pulsar: Applied Biosystems|MDS SCIEX QSTAR Pulsar.
Definition cv.hpp:2640
UNIMOD_cGMP_RMP_loss
cGMP+RMP-loss: S-guanylation-2.
Definition cv.hpp:11007
MS_32_bit_float
32-bit float: 32-bit precision little-endian floating point conforming to IEEE-754.
Definition cv.hpp:2169
MS_product_ion_spectrum_OBSOLETE
product ion spectrum: A mass spectrum recorded from any spectrometer in which the appropriate m/z sep...
Definition cv.hpp:1599
MS_SEQUEST_Consensus
SEQUEST:Consensus: Specify depth as value of the CVParam.
Definition cv.hpp:3606
MS_impact
impact: Bruker Daltonics' impact: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.
Definition cv.hpp:6681
MS_modification_specificity_rule
modification specificity rule: The specificity rules for the modifications applied by the search engi...
Definition cv.hpp:3651
UNIMOD_Xlink_BuUrBu_214_
Xlink:BuUrBu[214]: Water quenched monolink of BuUrBu crosslinker.
Definition cv.hpp:13536
MS_Pepitome
Pepitome: Tabb Lab software for spectral library searches on tandem mass spectra.
Definition cv.hpp:5166
MS_LTQ_Orbitrap_Classic
LTQ Orbitrap Classic: Thermo Fisher Scientific LTQ Orbitrap Classic.
Definition cv.hpp:8928
MS_TopPIC_spectral_FDR
TopPIC:spectral FDR: TopPIC spectrum-level FDR.
Definition cv.hpp:9210
UO_rotational_frequency_unit
rotational frequency unit: A unit which is a standard measure of the number of rotations in a given t...
Definition cv.hpp:13977
MS_ProteomeDiscoverer_Spectrum_Selector_Total_Intensity_Threshold
ProteomeDiscoverer:Spectrum Selector:Total Intensity Threshold: Used to filter out tandem mass spectr...
Definition cv.hpp:5259
MS_surface_enhanced_neat_desorption
surface enhanced neat desorption: Matrix-assisted laser desorption ionization in which the matrix is ...
Definition cv.hpp:1371
MS_ProteinExtractor_Score
ProteinExtractor:Score: The score calculated by ProteinExtractor.
Definition cv.hpp:4926
UO_liter
liter: A volume unit which is equal to one thousandth of a cubic meter or 10^[-3] m^[3],...
Definition cv.hpp:14100
MS_MALDI_LTQ_Orbitrap
MALDI LTQ Orbitrap: Thermo Scientific MALDI LTQ Orbitrap MS.
Definition cv.hpp:2601
MS_frag__z_ion
frag: z ion: Fragmentation information, type of product: z ion.
Definition cv.hpp:4122
UNIMOD_dHex_1_Hex_5_HexNAc_3_Sulf_1_
dHex(1)Hex(5)HexNAc(3)Sulf(1): DHex Hex(5) HexNAc(3) Sulf.
Definition cv.hpp:12564
UNIMOD_Succinyl_13C_4_
Succinyl:13C(4): Succinic anhydride labeling reagent, heavy form (+4amu, 4C13), N-term & K.
Definition cv.hpp:9537
UO_stone
stone: An imperial mass unit which is equivalent to 6,350.293,18 grams, or 14 pounds.
Definition cv.hpp:14898
MS_fragment_ion_m_z
fragment ion m/z (product ion m/z): The m/z of the product ion.
Definition cv.hpp:4104
MS_PA_OBSOLETE
PA (proton affinity): The proton affinity of a species M is defined as the negative of the enthalpy c...
Definition cv.hpp:1101
MS_TOPP_IDFilter
TOPP IDFilter: Filters results from protein or peptide identification engines based on different crit...
Definition cv.hpp:7017
MS_magnetic_deflection
magnetic deflection: The deflection of charged particles in a magnetic field due to a force equal to ...
Definition cv.hpp:1056
MS_TripleTOF_4600
TripleTOF 4600: SCIEX TripleTOF 4600 time-of-flight mass spectrometer.
Definition cv.hpp:8202
UNIMOD_Xle__His
Xle->His: Leu/Ile->His substitution.
Definition cv.hpp:10575
MS_isotopic_ion_MS_peak
isotopic ion MS peak: A mass spectrometry peak that represents one or more isotopic ions....
Definition cv.hpp:9291
UNIMOD_dHex_1_Hex_4_HexNAc_3_NeuAc_1_Sulf_1_
dHex(1)Hex(4)HexNAc(3)NeuAc(1)Sulf(1): DHex Hex(4) HexNAc(3) NeuAc Sulf.
Definition cv.hpp:12630
MS_PeptideShaker_peptide_confidence
PeptideShaker peptide confidence: The probability based PeptideShaker peptide confidence.
Definition cv.hpp:7857
MS_TopMG_spectral_E_value
TopMG:spectral E-value: TopMG spectrum-level E-value.
Definition cv.hpp:9273
UNIMOD_Hex_6_HexNAc_3_Phos_1_
Hex(6)HexNAc(3)Phos(1): Hex(6) HexNAc(3) Phos.
Definition cv.hpp:12570
MS_ProteomeDiscoverer_Xtract_Lowest_Charge
ProteomeDiscoverer:Xtract:Lowest Charge: Lowest charge state that is allowed for the deconvolution of...
Definition cv.hpp:5319
MS_Exactive_Plus
Exactive Plus: Thermo Scientific Exactive Plus MS.
Definition cv.hpp:8028
UNIMOD_dHex_4_Hex_3_HexNAc_2_NeuAc_1_
dHex(4)Hex(3)HexNAc(2)NeuAc(1): DHex(4) Hex(3) HexNAc(2) NeuAc(1).
Definition cv.hpp:13722
MS_statistical_threshold
statistical threshold: Estimated statistical threshold.
Definition cv.hpp:7896
MS_Greazy
Greazy: Open-source software for automated phospholipid tandem mass spectrometry identification.
Definition cv.hpp:9333
MS_LCMS_2010A
LCMS-2010A: Shimadzu Scientific Instruments LCMS-2010A MS.
Definition cv.hpp:2478
MS_double_focusing_mass_spectrometer_OBSOLETE
double-focusing mass spectrometer: A mass spectrometer that uses a magnetic sector for m/z focusing a...
Definition cv.hpp:1428
MS_Byonic_DeltaMod_Score
Byonic:DeltaMod Score: The drop in Byonic score from the top-scoring peptide to the next peptide diff...
Definition cv.hpp:7239
UNIMOD_Hex_3_HexNAc_3_NeuAc_2_
Hex(3)HexNAc(3)NeuAc(2): Hex(3) HexNAc(3) NeuAc(2).
Definition cv.hpp:13260
MS_SpectrumMill_SPI
SpectrumMill:SPI: SpectrumMill SPI score (%).
Definition cv.hpp:5118
UNIMOD_Carbamyl
Carbamyl: Carbamylation.
Definition cv.hpp:9384
MS_6330_Ion_Trap_LC_MS
6330 Ion Trap LC/MS: The 6330 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined w...
Definition cv.hpp:2022
MS_H_Score_threshold
H-Score threshold: Threshold for H-score PTM site location score.
Definition cv.hpp:8130
MS_TMT_reagent_127N
TMT reagent 127N: The name of the sample labelled with the TMT reagent 127N.
Definition cv.hpp:8709
MS_partial_charge_transfer_reaction_OBSOLETE
partial charge transfer reaction: Reaction of an ion with a neutral species in which some but not all...
Definition cv.hpp:1890
UNIMOD_Xlink_BS2G_96_
Xlink:BS2G[96]: Intact BS2-G crosslinker.
Definition cv.hpp:13566
UNIMOD_NA_LNO2
NA-LNO2: Nitroalkylation by Nitro Linoleic Acid.
Definition cv.hpp:10809
MS_peak_targeting_suitability_rank
peak targeting suitability rank: Ordinal specifying the rank of a peak in a spectrum in terms of suit...
Definition cv.hpp:3426
UNIMOD_glucosone
glucosone: Condensation product of glucosone.
Definition cv.hpp:11244
UO_micrometer
micrometer: A length unit which is equal to one millionth of a meter or 10^[-6] m.
Definition cv.hpp:13854
MS_TopMG_variable_PTM_number
TopMG:variable PTM number: Maximum number of variable PTMs.
Definition cv.hpp:9264
UNIMOD_Hex_5_HexNAc_2_Phos_1_
Hex(5)HexNAc(2)Phos(1): Hex(5) HexNAc(2) Phos.
Definition cv.hpp:12459
MS_kinetic_energy_analyzer
kinetic energy analyzer: A device for measuring the kinetic energy of charged particles using a retar...
Definition cv.hpp:1494
MS_ProteomeDiscoverer_Mascot_Significance_High
ProteomeDiscoverer:Mascot:Significance High: Calculated relaxed significance when performing a decoy ...
Definition cv.hpp:7137
MS_instrument_model
instrument model: Instrument model name not including the vendor's name.
Definition cv.hpp:357
UNIMOD_MesitylOxide
MesitylOxide: Acetone chemical artifact.
Definition cv.hpp:13500
MS_resonance_enhanced_multiphoton_ionization
resonance enhanced multiphoton ionization: Multiphoton ionization in which the ionization cross secti...
Definition cv.hpp:1353
UNIMOD_Cation_Li
Cation:Li: Replacement of proton by lithium.
Definition cv.hpp:11187
UNIMOD_Biotin_Thermo_21360
Biotin:Thermo-21360: Was Biotin-PEO4-hydrazide.
Definition cv.hpp:10965
UNIMOD_Lys__Allysine
Lys->Allysine: Lysine oxidation to aminoadipic semialdehyde.
Definition cv.hpp:10005
UO_centimeter
centimeter: A length unit which is equal to one hundredth of a meter or 10^[-2] m.
Definition cv.hpp:13848
MS_NICI
NICI (Negative Ion chemical ionization): Chemical ionization that results in the formation of negativ...
Definition cv.hpp:1326
UNIMOD_Cys__Thr
Cys->Thr: Cys->Thr substitution.
Definition cv.hpp:11451
MS_isolation_window_attribute
isolation window attribute: Isolation window parameter.
Definition cv.hpp:3063
MS_Pro_ID
Pro ID: Applied Biosystems|MDS SCIEX software for protein identification.
Definition cv.hpp:2673
MS_matrix_assisted_laser_desorption_ionization
matrix-assisted laser desorption ionization: The formation of gas-phase ions from molecules that are ...
Definition cv.hpp:519
UNIMOD_thioacylPA
thioacylPA: Membrane protein extraction.
Definition cv.hpp:11223
UNIMOD_Xlink_BS2G_217_
Xlink:BS2G[217]: Tris-quenched monolink of BS2-G crosslinker.
Definition cv.hpp:13575
MS_flow_rate_array
flow rate array: A data array of flow rate measurements.
Definition cv.hpp:3159
UNIMOD_Hex_1_HexNAc_1_
Hex(1)HexNAc(1): Hex1HexNAc1.
Definition cv.hpp:10953
MS_Associated_file_URI
Associated file URI: URI of one external file associated to the PRIDE experiment (maybe through a PX ...
Definition cv.hpp:8958
MS_MSPathFinder_PepQValue
MSPathFinder:PepQValue: MSPathFinder peptide-level Q-value.
Definition cv.hpp:8592
MS_1200_series_LC_MSD_VL
1200 series LC/MSD VL: The LC/MSD VL ion trap is part of the family of Agilent ion trap mass spectrom...
Definition cv.hpp:2034
MS_Xevo_G2_Tof
Xevo G2 Tof: Waters oa-ToF based Xevo G2 Tof.
Definition cv.hpp:5766
MS_ABI
ABI (Applied Biosystems instrument model): Applied Biosystems instrument model.
Definition cv.hpp:2088
MS_detector_resolution
detector resolution: The resolving power of the detector to detect the smallest difference between tw...
Definition cv.hpp:348
MS_ChromaTOF_HRT_software
ChromaTOF HRT software: Software for acquisition, processing and analysis of data for LECO instrument...
Definition cv.hpp:6045
MS_Linked_Scan_at_Constant_E2_V_OBSOLETE
Linked Scan at Constant E2/V: A linked scan performed on a sector instrument that incorporates at lea...
Definition cv.hpp:1563
MS_Spectrum_Mill_for_MassHunter_Workstation
Spectrum Mill for MassHunter Workstation: Software for protein identification and characterization of...
Definition cv.hpp:2730
MS_ICPL_reagent_4
ICPL reagent 4: The name of the sample labelled with the ICPL reagent 4.
Definition cv.hpp:8277
MS_gaseous_sample_state
gaseous sample state: State if the sample is in gaseous form.
Definition cv.hpp:420
MS_Hitachi_instrument_model
Hitachi instrument model: Hitachi instrument model.
Definition cv.hpp:2064
MS_pulsed_q_dissociation
pulsed q dissociation: A process that involves precursor ion activation at high Q,...
Definition cv.hpp:2454
UNIMOD_Gly__Arg
Gly->Arg: Gly->Arg substitution.
Definition cv.hpp:10512
MS_QTRAP_6500_
QTRAP 6500+: SCIEX QTRAP 6500+.
Definition cv.hpp:8199
MS_precursor_ion_OBSOLETE
precursor ion: An ion that reacts to form particular product ions. The reaction can be unimolecular d...
Definition cv.hpp:1590
MS_group_PSMs_by_sequence_with_modifications_and_charge
group PSMs by sequence with modifications and charge: Group PSMs by distinct peptide sequence with ta...
Definition cv.hpp:7944
UNIMOD_Arg__Val
Arg->Val: Arg->Val substitution.
Definition cv.hpp:11832
MS_prolate_traochoidal_mass_spectrometer_OBSOLETE
prolate traochoidal mass spectrometer: A mass spectrometer in which the ions of different m/z are sep...
Definition cv.hpp:1455
UNIMOD_Hex_4_HexNAc_2_NeuAc_1_
Hex(4)HexNAc(2)NeuAc(1): Hex(4) HexNAc(2) NeuAc —OR— Hex(3) HexNAc(2) dHex NeuGc.
Definition cv.hpp:12468
MS_ProteomeDiscoverer_SEQUEST_Maximum_Peptides_Considered
ProteomeDiscoverer:SEQUEST:Maximum Peptides Considered: Maximum number of peptides that are searched ...
Definition cv.hpp:5436
UNIMOD_dHex_3_Hex_3_HexNAc_1_
dHex(3)Hex(3)HexNAc(1): DHex(3) Hex(3) HexNAc.
Definition cv.hpp:13680
UNIMOD_Pro__Glu
Pro->Glu: Pro->Glu substitution.
Definition cv.hpp:11757
MS_sequence_same_set_protein
sequence same-set protein: A protein which is indistinguishable or equivalent to another protein,...
Definition cv.hpp:5196
MS_MZmine
MZmine: A framework for differential analysis of mass spectrometry data.
Definition cv.hpp:7476
MS_spectrum_representation
spectrum representation: Way in which the spectrum is represented, either with regularly spaced data ...
Definition cv.hpp:2181
MS_ProteomeDiscoverer_Mascot_Time_interval_between_attempts_to_submit_a_search
ProteomeDiscoverer:Mascot:Time interval between attempts to submit a search: Time interval between at...
Definition cv.hpp:5373
MS_Andromeda_score
Andromeda:score: The probability based score of the Andromeda search engine.
Definition cv.hpp:7464
UNIMOD_dHex_3_Hex_2_HexNAc_4_Sulf_2_
dHex(3)Hex(2)HexNAc(4)Sulf(2): DHex(3) Hex(2) HexNAc(4) Sulf(2).
Definition cv.hpp:13716
MS_cross_link_spectrum_identification_item
cross-link spectrum identification item: Cross-linked spectrum identification item.
Definition cv.hpp:7983
UNIMOD_Xlink_BuUrBu_111_
Xlink:BuUrBu[111]: BuUr fragment of BuUrBu crosslinker.
Definition cv.hpp:13527
MS_TopPIC_spectral_cutoff_type
TopPIC:spectral cutoff type: Spectrum-level cutoff type for filtering identified proteoform spectrum ...
Definition cv.hpp:9180
UNIMOD_dHex_2_Hex_5_HexNAc_4_
dHex(2)Hex(5)HexNAc(4): DHex(2) Hex(5) HexNAc(4).
Definition cv.hpp:12708
UNIMOD_Trp__Kynurenin
Trp->Kynurenin: Tryptophan oxidation to kynurenin.
Definition cv.hpp:10002
MS_x_Tracker
x-Tracker: X-Tracker generic tool for quantitative proteomics.
Definition cv.hpp:6816
UNIMOD_Delta_H_4_C_2_
Delta:H(4)C(2): Acetaldehyde +28.
Definition cv.hpp:9804
MS_contact_phone_number
contact phone number: Phone number of the contact person or organization.
Definition cv.hpp:5679
UNIMOD_Unknown_302
Unknown:302: Unidentified modification of 301.9864 found in open search.
Definition cv.hpp:13773
UNIMOD_methylsulfonylethyl
methylsulfonylethyl: Reaction with methyl vinyl sulfone.
Definition cv.hpp:12255
UNIMOD_dHex_1_Hex_2_HexNAc_1_Sulf_1_
dHex(1)Hex(2)HexNAc(1)Sulf(1): DHex Hex(2) HexNAc Sulf.
Definition cv.hpp:12813
UNIMOD_ESP_2H_10_
ESP:2H(10): ESP-Tag heavy d10.
Definition cv.hpp:9546
MS_number_of_peptide_seqs_compared_to_each_spectrum
number of peptide seqs compared to each spectrum: Number of peptide seqs compared to each spectrum.
Definition cv.hpp:3588
MS_param__c_ion
param: c ion: Parameter information, type of product: c ion with charge on the N-terminal side.
Definition cv.hpp:3816
MS_orbitrap
orbitrap: An ion trapping device that consists of an outer barrel-like electrode and a coaxial inner ...
Definition cv.hpp:2052
UNIMOD_cysTMT6plex
cysTMT6plex: Cysteine-reactive Sixplex Tandem Mass Tag®.
Definition cv.hpp:11250
MS_MALDI_LTQ_XL
MALDI LTQ XL: Thermo Scientific MALDI LTQ XL MS.
Definition cv.hpp:2598
MS_cyclotron
cyclotron: A device that uses an oscillating electric field and magnetic field to accelerate charged ...
Definition cv.hpp:1425
UO_radian_per_second
radian per second: An angular unit velocity which is equal to about 9.54930 rpm (revolutions per minu...
Definition cv.hpp:14040
MS_nth_generation_product_ion_OBSOLETE
nth generation product ion: Serial product ions from dissociation of selected precursor ions where n ...
Definition cv.hpp:1581
MS_TOPP_IDConflictResolver
TOPP IDConflictResolver: Resolves ambiguous annotations of features with peptide identifications.
Definition cv.hpp:7014
UNIMOD_4_ONE_Delta_H__2_O__1_
4-ONE+Delta:H(-2)O(-1): Dehydrated 4-Oxononenal Michael adduct.
Definition cv.hpp:10887
MS_LTQ_Orbitrap_Discovery
LTQ Orbitrap Discovery: LTQ Orbitrap Discovery.
Definition cv.hpp:2274
MS_quantification_datatype
quantification datatype: The data type of the value reported in a QuantLayer.
Definition cv.hpp:5829
UNIMOD_Label_15N_4_
Label:15N(4): SILAC 15N(4).
Definition cv.hpp:11076
UO_square_millimeter
square millimeter: An area unit which is equal to one millionth of a square meter or 10^[-6] m^[2].
Definition cv.hpp:14049
UNIMOD_Unknown_420
Unknown:420: Unidentified modification of 420.0506 found in open search.
Definition cv.hpp:13779
UNIMOD_2_hydroxyisobutyrylation
2-hydroxyisobutyrylation: 2-hydroxyisobutyrylation.
Definition cv.hpp:13485
PEFF_File_Header_Section_term
File Header Section term: CV term that may appear in a PEFF File Header Section.
Definition cv.hpp:123
MS_ProteomeDiscoverer_Delta_Score
ProteomeDiscoverer:Delta Score: The Delta Score reported by Proteome Discoverer version 2.
Definition cv.hpp:8925
MS_6550_iFunnel_Q_TOF_LC_MS
6550 iFunnel Q-TOF LC/MS: The 6550 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography...
Definition cv.hpp:8769
MS_label_free_proteingroup_level_quantitation
label-free proteingroup level quantitation: Label-free proteingroup level quantitation.
Definition cv.hpp:6510
MS_count_of_identified_clusters
count of identified clusters: The number of protein clusters that have been identified,...
Definition cv.hpp:7668
UO_furlong
furlong: A length unit which is equal to 20,116.8 metres, 660 feet, or 10 chains.
Definition cv.hpp:14841
UNIMOD_NBS
NBS: Shimadzu NBS-12C.
Definition cv.hpp:9720
MS_database_UniProtKB
database UniProtKB: The name of the UniProtKB knowledgebase.
Definition cv.hpp:6825
MS_mass_analyzer_type
mass analyzer type: Mass analyzer separates the ions according to their mass-to-charge ratio.
Definition cv.hpp:1911
MS_REMPI
REMPI (resonance enhanced multiphoton ionization): Multiphoton ionization in which the ionization cro...
Definition cv.hpp:1356
MS_ProteomeDiscoverer_SEQUEST_CTerminal_Modification
ProteomeDiscoverer:SEQUEST:CTerminal Modification: Dynamic C-terminal modification that is used durin...
Definition cv.hpp:5424
MS_MassHunter_Easy_Access
MassHunter Easy Access: Software for open access data acquisition.
Definition cv.hpp:2706
PEFF_AltAC
AltAC: Alternative Accession Code.
Definition cv.hpp:216
MS_iTRAQ_reagent_117
iTRAQ reagent 117: The name of the sample labelled with the iTRAQ reagent 117.
Definition cv.hpp:8334
UO_fold_dilution
fold dilution: A unit that is the ratio of concentration of two solutions of interest,...
Definition cv.hpp:14763
MS_scan_law
scan law: Describes the function in control of the m/z scan (for scanning instruments)....
Definition cv.hpp:318
MS_Quattro_Ultima
Quattro Ultima: Waters (triple) quadrupole based Ultima.
Definition cv.hpp:942
MS_2000_QTRAP
2000 QTRAP: SCIEX 2000 QTRAP.
Definition cv.hpp:8184
MS_mean_inverse_reduced_ion_mobility_array
mean inverse reduced ion mobility array: Array of drift times or inverse reduced ion mobilities,...
Definition cv.hpp:8871
MS_MALDI_SYNAPT_G2_Si
MALDI SYNAPT G2-Si: Waters Corporation MALDI SYNAPT G2-Si orthogonal acceleration time-of-flight mass...
Definition cv.hpp:8601
MS_doi
doi (Digital Object Identifier (DOI)): DOI unique identifier of a publication.
Definition cv.hpp:6186
MS_peptide_sequence_level_identification_statistic
peptide sequence-level identification statistic: Identification confidence metric for a peptide.
Definition cv.hpp:3735
UNIMOD_Gln__pyro_Glu
Gln->pyro-Glu: Pyro-glu from Q.
Definition cv.hpp:9435
MS_negative_mode_adduct_ion
negative mode adduct ion: Adduct ion with negative ionization.
Definition cv.hpp:8844
MS_ProteomeDiscoverer_Minimal_peptide_weight
ProteomeDiscoverer:Minimal peptide weight: Minimum peptide weight contributing to protein probability...
Definition cv.hpp:5595
UNIMOD_dHex_1_Hex_4_HexNAc_4_
dHex(1)Hex(4)HexNAc(4): DHex Hex(4) HexNAc(4) —OR— Hex(4) HexNAc(4) Pent Me.
Definition cv.hpp:9912
MS_MS1_label_based_protein_level_quantitation
MS1 label-based protein level quantitation: MS1 label-based protein level quantitation.
Definition cv.hpp:6441
UNIMOD_Hex_1_HexNAc_2_NeuAc_2_Sulf_1_
Hex(1)HexNAc(2)NeuAc(2)Sulf(1): Hex HexNAc(2) NeuAc(2) Sulf.
Definition cv.hpp:13047
MS_Bruker_U2_format
Bruker U2 format: Bruker HyStar U2 file format.
Definition cv.hpp:3147
MS_4700_Explorer
4700 Explorer: Applied Biosystems software for data acquisition and analysis.
Definition cv.hpp:2217
MS_OpenMS_file_format
OpenMS file format: File format developed by the OpenMS team.
Definition cv.hpp:8889
UNIMOD_Arg__Ala
Arg->Ala: Arg->Ala substitution.
Definition cv.hpp:11820
MS_TOPP_MascotAdapterOnline
TOPP MascotAdapterOnline: Identifies MS2 spectra using the online version of the external program Mas...
Definition cv.hpp:6996
UNIMOD_IASD
IASD: Iodoacetamide derivative of stilbene (reaction product with thiol).
Definition cv.hpp:13443
UNIMOD_Diacylglycerol
Diacylglycerol: Diacylglycerol.
Definition cv.hpp:10062
MS_molecular_ion_OBSOLETE
molecular ion: An ion formed by the removal of one or more electrons to form a positive ion or the ad...
Definition cv.hpp:1680
MS_LC_MS_feature_intensity
LC-MS feature intensity: Maximum peak intensity of the LC-MS feature.
Definition cv.hpp:5934
MS_SNAP
SNAP (sophisticated numerical annotation procedure): It searches for known patterns in the measured s...
Definition cv.hpp:6426
UNIMOD_Pentose
Pentose: Pentose.
Definition cv.hpp:12360
UNIMOD_dHex_1_Hex_3_HexNAc_5_NeuAc_1_
dHex(1)Hex(3)HexNAc(5)NeuAc(1): DHex Hex(3) HexNAc(5) NeuAc.
Definition cv.hpp:13395
MS_protein_level_PSM_counts
protein level PSM counts: The number of spectra identified for this protein in spectral counting.
Definition cv.hpp:6906
UNIMOD_LRGG_methyl
LRGG+methyl: LeumethylArgGlyGly.
Definition cv.hpp:13431
MS_centroid_spectrum
centroid spectrum: Processing of profile data to produce spectra that contains discrete peaks of zero...
Definition cv.hpp:720
MS_Paragon_input_parameter
Paragon input parameter: Search engine input parameters specific to Paragon.
Definition cv.hpp:7713
UNIMOD_Cytopiloyne_water
Cytopiloyne+water: Nucleophilic addition to cytopiloyne+H2O.
Definition cv.hpp:9840
UNIMOD_Arg__Pro
Arg->Pro: Arg->Pro substitution.
Definition cv.hpp:10671
MS_Anubis
Anubis: Anubis software for selected reaction monitoring data.
Definition cv.hpp:7680
MS_DI
DI (desorption ionization): The formation of ions from a solid or liquid material after the rapid vap...
Definition cv.hpp:1179
UNIMOD_Label_13C_6_15N_4__Dimethyl
Label:13C(6)15N(4)+Dimethyl: Dimethylated Arg13C(6) 15N(4).
Definition cv.hpp:11295
MS_TOPP_OpenSwathRTNormalizer
TOPP OpenSwathRTNormalizer: Generates a transformation file for retention time space into normalized ...
Definition cv.hpp:7053
MS_Bruker_FID_format
Bruker FID format: Bruker FID file format.
Definition cv.hpp:3174
MS_TOPP_feature_finder
TOPP feature finder: Feature finder component of the TOPP software.
Definition cv.hpp:6942
PEFF_Chain
Chain: Sequence range of active processed polypeptide.
Definition cv.hpp:234
MS_MALDI_Solutions
MALDI Solutions: Shimadzu Biotech software for data acquisition, processing, and analysis.
Definition cv.hpp:5073
MS_total_ion_current_chromatogram
total ion current chromatogram: Chromatogram obtained by plotting the total ion current detected in e...
Definition cv.hpp:1107
UNIMOD_dHex_1_Hex_2_HexNAc_4_
dHex(1)Hex(2)HexNAc(4): DHex Hex(2) HexNAc(4).
Definition cv.hpp:13074
UNIMOD_Propiophenone
Propiophenone: Propiophenone.
Definition cv.hpp:12135
MS_MALDI_Synapt_G2_HDMS
MALDI Synapt G2 HDMS: Waters oa-ToF based MALDI Synapt G2 HDMS.
Definition cv.hpp:5727
UNIMOD_HexNAc_1_Kdn_2_
HexNAc(1)Kdn(2): HexNAc Kdn(2) —OR— Hex(2) HexNAc HexA.
Definition cv.hpp:12792
MS_PSM_level_global_FNR
PSM-level global FNR: Estimation of the global false negative rate of peptide spectrum matches.
Definition cv.hpp:7842
MS_sprayed_MALDI_matrix_preparation
sprayed MALDI matrix preparation: Sprayed MALDI matrix preparation.
Definition cv.hpp:3210
UNIMOD_Hex_3_HexNAc_3_NeuAc_1_Sulf_1_
Hex(3)HexNAc(3)NeuAc(1)Sulf(1): Hex(3) HexNAc(3) NeuAc Sulf.
Definition cv.hpp:13185
MS_Mascot_DAT_format
Mascot DAT format: Source file for this mzIdentML was in Mascot DAT file format.
Definition cv.hpp:4032
MS_ProteomeDiscoverer_Mascot_Weight_of_X_Ions
ProteomeDiscoverer:Mascot:Weight of X Ions: Determines if to use X ions for spectrum matching.
Definition cv.hpp:5661
MS_protein_rank
protein rank: The rank of the protein in a list sorted by the search engine.
Definition cv.hpp:4305
UNIMOD_azole
azole: Formation of five membered aromatic heterocycle.
Definition cv.hpp:12207
MS_inductively_coupled_plasma
inductively coupled plasma: A gas discharge ion source in which the energy to the plasma is supplied ...
Definition cv.hpp:456
UNIMOD_Hex_1_HexNAc_3_Sulf_1_
Hex(1)HexNAc(3)Sulf(1): Hex HexNAc(3) Sulf.
Definition cv.hpp:12870
MS_DB_filter_on_accession_numbers
DB filter on accession numbers: Filtering applied specifically by accession number pattern.
Definition cv.hpp:3561
MS_SEQUEST_sort_by_PreviousAminoAcid
SEQUEST:sort by PreviousAminoAcid: Sort order of SEQUEST search results given by the previous amino a...
Definition cv.hpp:3642
MS_group_PSMs_by_sequence_with_modifications
group PSMs by sequence with modifications: Group PSMs by distinct peptide sequence with taking modifi...
Definition cv.hpp:7941
PEFF_SpecificValue
SpecificValue: PEFF specific values for a defined key.
Definition cv.hpp:162
MS_phosphoRS_score_threshold
phosphoRS score threshold: Threshold for phosphoRS score.
Definition cv.hpp:8154
MS_SRM_quantitation_analysis
SRM quantitation analysis: Selected Reaction Monitoring workflow (XIC quantitation of precursor / fra...
Definition cv.hpp:5928
MS_PROTEINEER_fc
PROTEINEER fc: Bruker PROTEINEER fc software.
Definition cv.hpp:2862
UO_roentgen
roentgen: An exposure unit which is equal to the amount of radiation required to liberate positive an...
Definition cv.hpp:14208
MS_de_novo_search
de novo search: A de novo sequencing search (without database).
Definition cv.hpp:3528
UNIMOD_spermine
spermine: Spermine adduct.
Definition cv.hpp:12351
MS_spectrum_descriptions
spectrum descriptions: Descriptions of the input spectra.
Definition cv.hpp:4476
UNIMOD_Hex_4_Phos_1_
Hex(4)Phos(1): Hex(4) Phos.
Definition cv.hpp:12804
UNIMOD_Iodoacetanilide
Iodoacetanilide: Iodoacetanilide derivative.
Definition cv.hpp:12303
MS_MSPathFinder_QValue
MSPathFinder:QValue: MSPathFinder Q-value.
Definition cv.hpp:8589
MS_esquireControl
esquireControl: Bruker software for data acquisition.
Definition cv.hpp:2832
MS_database_IPI_chicken
database IPI_chicken: International Protein Index database for Gallus gallus sequences.
Definition cv.hpp:4266
UO_gram_per_mole
gram per mole: A molar mass unit which is equal to one gram of mass of one mole of chemical element o...
Definition cv.hpp:14067
UNIMOD_dHex_1_Hex_7_HexNAc_3_Phos_1_
dHex(1)Hex(7)HexNAc(3)Phos(1): DHex Hex(7) HexNAc(3) Phos.
Definition cv.hpp:12747
MS_SEQUEST_sf
SEQUEST:sf: The SEQUEST result 'Sf'.
Definition cv.hpp:3939
UNIMOD_Phosphopropargyl
Phosphopropargyl: Phospho-propargylamine.
Definition cv.hpp:11214
MS_64_bit_float
64-bit float: 64-bit precision little-endian floating point conforming to IEEE-754.
Definition cv.hpp:2175
MS_constant_neutral_loss_scan_OBSOLETE
constant neutral loss scan: Spectrum of all precursor ions that undergo a selected m/z decrement.
Definition cv.hpp:1530
UNIMOD_Glu__Trp
Glu->Trp: Glu->Trp substitution.
Definition cv.hpp:11520
MS_protXML_format
protXML format: The XML-based protXML file format for encoding protein identifications,...
Definition cv.hpp:4665
UNIMOD_C8_QAT
C8-QAT: [3-(2,5)-Dioxopyrrolidin-1-yloxycarbonyl)-propyl]dimethyloctylammonium.
Definition cv.hpp:10332
UO_milligray
milligray: An absorbed dose unit which is equal to one thousandth of a gray or 10^[-3] Gy.
Definition cv.hpp:14226
MS_light_labeled_sample
light labeled sample (unlabeled sample): A sample that has not been labelled or modified....
Definition cv.hpp:6561
MS_peak_intensity_rank
peak intensity rank: Ordinal specifying the rank in intensity of a peak in a spectrum....
Definition cv.hpp:3423
UNIMOD_dHex_3_Hex_4_HexNAc_4_Sulf_1_
dHex(3)Hex(4)HexNAc(4)Sulf(1): DHex(3) Hex(4) HexNAc(4) Sulf.
Definition cv.hpp:12756
UNIMOD_Amino
Amino: Tyrosine oxidation to 2-aminotyrosine.
Definition cv.hpp:9981
MS_contact_affiliation
contact affiliation: Home institution of the contact person.
Definition cv.hpp:2421
MS_QTRAP_6500
QTRAP 6500: SCIEX QTRAP 6500.
Definition cv.hpp:8196
UNIMOD_Lys__Trp
Lys->Trp: Lys->Trp substitution.
Definition cv.hpp:11673
MS_sampled_noise_m_z_array
sampled noise m/z array: A data array of parallel, independent m/z values for a sampling of noise acr...
Definition cv.hpp:8649
UNIMOD_Hex_3_HexNAc_4_Sulf_1_
Hex(3)HexNAc(4)Sulf(1): Hex(3) HexNAc(4) Sulf.
Definition cv.hpp:12477
MS_IRMPD
IRMPD (infrared multiphoton dissociation): Multiphoton ionization where the reactant ion dissociates ...
Definition cv.hpp:1269
UNIMOD_Tyr__Trp
Tyr->Trp: Tyr->Trp substitution.
Definition cv.hpp:11994
MS_prot_FDR_threshold
prot:FDR threshold: False-discovery rate threshold for proteins.
Definition cv.hpp:4740
UNIMOD_Pro__Cys
Pro->Cys: Pro->Cys substitution.
Definition cv.hpp:11751
UO_kilogram_per_liter
kilogram per liter: A mass unit density which is equal to mass of an object in kilograms divided by t...
Definition cv.hpp:14319
MS_HCTultra_ETD_II
HCTultra ETD II: Bruker Daltonics' HCTultra ETD II: ESI Q-TOF, Nanospray, APCI, APPI,...
Definition cv.hpp:2769
MS_even_electron_ion_OBSOLETE
even-electron ion: An ion containing no unpaired electrons in its ground electronic state,...
Definition cv.hpp:1200
UO_microgram
microgram: A mass unit which is equal to one millionth of a gram or 10^[-6] g.
Definition cv.hpp:13872
MS_ProteinExtractor_ProteinSolverWeighting
ProteinExtractor:ProteinSolverWeighting: Influence of ProteinSolver search engine in the process of m...
Definition cv.hpp:4725
MS_Triple_Quad_6500
Triple Quad 6500: SCIEX Triple Quad 6500.
Definition cv.hpp:8235
UNIMOD_maleimide5
maleimide5: Maleimide-5-saccharide.
Definition cv.hpp:11229
UO_cells_per_microliter
cells per microliter: A unit of cell concentration which is equal to one cell in a volume of 1 microl...
Definition cv.hpp:14745
MS_ProteinExtractor_IncludeIdentified
ProteinExtractor:IncludeIdentified: Flag indicating if identified proteins should be included.
Definition cv.hpp:4677
UNIMOD_dHex_1_Hex_4_HexA_1_
dHex(1)Hex(4)HexA(1): DHex Hex(4) HexA.
Definition cv.hpp:13671
MS_protein_group_or_subset_relationship
protein group or subset relationship: Protein group or subset relationships.
Definition cv.hpp:3762
UNIMOD_Ala__Pro
Ala->Pro: Ala->Pro substitution.
Definition cv.hpp:10407
UNIMOD_Ala__Thr
Ala->Thr: Ala->Thr substitution.
Definition cv.hpp:10401
MS_GCT
GCT: Waters oa-ToF based GCT.
Definition cv.hpp:843
MS_PIA_PSM_sets_created
PIA:PSM sets created: Indicates whether PSM sets were created.
Definition cv.hpp:7626
MS_peptide_spectrum_match_scoring_algorithm
peptide spectrum match scoring algorithm: Algorithm used to score the match between a spectrum and a ...
Definition cv.hpp:6306
MS_Xevo_TQ_MS
Xevo TQ MS: Waters quadrupole based Xevo TQ MS.
Definition cv.hpp:5784
MS_median_baseline_reduction
median baseline reduction: The spectrum that will be baseline subtracted is divided into a number of ...
Definition cv.hpp:6417
MS_ProteomeDiscoverer_Max_Modifications_Per_Peptide
ProteomeDiscoverer:Max Modifications Per Peptide: Maximum number of different modifications that a pe...
Definition cv.hpp:5433
UNIMOD_Tyr__His
Tyr->His: Tyr->His substitution.
Definition cv.hpp:10797
MS_6410_Triple_Quad_LC_MS
6410 Triple Quad LC/MS (6410 Triple Quadrupole LC/MS): The 6410 Quadrupole LC/MS system is a Agilent ...
Definition cv.hpp:2031
MS_unknown_modification
unknown modification: This term should be given if the modification was unknown.
Definition cv.hpp:4779
UNIMOD_Dimethylaminoethyl
Dimethylaminoethyl: Cys alkylation by dimethylaminoethyl halide.
Definition cv.hpp:13479
MS_ProteomeDiscoverer_4__Dynamic_Modification_OBSOLETE
ProteomeDiscoverer:4. Dynamic Modification: ProteomeDiscoverer's 4th dynamic post-translational modif...
Definition cv.hpp:5583
MS_confident_distinct_peptide_sequences
confident distinct peptide sequences: This counts the number of distinct peptide sequences....
Definition cv.hpp:3753
MS_p_value
p-value: P-value as result of one of the processing steps described. Specify in the description,...
Definition cv.hpp:6666
MS_Bruker_Daltonics_solarix_series
Bruker Daltonics solarix series: Bruker Daltonics' solarix: ESI quadrupole ion trap,...
Definition cv.hpp:5049
UNIMOD_Label_2H_4_
Label:2H(4): 4,4,5,5-D4 Lysine.
Definition cv.hpp:10284
MS_chemical_compound_formula
chemical compound formula: A combination of symbols used to express the chemical composition of a com...
Definition cv.hpp:3294
UNIMOD_Gluratylation
Gluratylation: Glutarylation.
Definition cv.hpp:13482
PEFF_SV
SV: Sequence version.
Definition cv.hpp:195
MS_ProteomeDiscoverer_SEQUEST_Weight_of_x_Ions
ProteomeDiscoverer:SEQUEST:Weight of x Ions: Uses x ions for spectrum matching with this relative fac...
Definition cv.hpp:5496
MS_EMR_radiation_chromatogram
EMR radiation chromatogram (electromagnetic radiation chromatogram): The measurement of electromagnet...
Definition cv.hpp:3132
UNIMOD_Asn__Pro
Asn->Pro: Asn->Pro substitution.
Definition cv.hpp:11736
UNIMOD_ExacTagThiol
ExacTagThiol: ExacTag Thiol label mass for 2-4-7-10 plex.
Definition cv.hpp:10881
MS_____R____P_
(?<=R)(?!P): Regular expression for Arg-C.
Definition cv.hpp:4236
MS_PSD
PSD (post-source decay): A technique specific to reflectron time-of-flight mass spectrometers where p...
Definition cv.hpp:768
UNIMOD_dHex_2_Hex_3_HexNAc_4_Pent_2_
dHex(2)Hex(3)HexNAc(4)Pent(2): DHex(2) Hex(3) HexNAc(4) Pent(2).
Definition cv.hpp:12669
UNIMOD_Trp__Asp
Trp->Asp: Trp->Asp substitution.
Definition cv.hpp:11928
MS_kinetic_method_OBSOLETE
kinetic method: An approach to determination of ion thermodynamic quantities by a bracketing procedur...
Definition cv.hpp:1869
MS_Non_peer_reviewed_dataset
Non peer-reviewed dataset: Dataset that has not been peer-reviewed by any means.
Definition cv.hpp:8988
MS_spectrum_sub_set_protein
spectrum sub-set protein: A protein with a sub-set of the matched spectra for another protein,...
Definition cv.hpp:5205
MS_absorption_chromatogram
absorption chromatogram: The measurement of light absorbed by the sample as a function of the retenti...
Definition cv.hpp:3135
MS_transition
transition: A set of two m/z values corresponding to the precursor m/z and a fragment m/z that in com...
Definition cv.hpp:3429
MS_Bruker_Container_nativeID_format
Bruker Container nativeID format: Native identifier (UUID).
Definition cv.hpp:7359
MS_ProteinExtractor_MascotWeighting
ProteinExtractor:MascotWeighting: Influence of Mascot search engine in the process of merging the sea...
Definition cv.hpp:4701
MS_Triple_Quad_4500
Triple Quad 4500: SCIEX Triple Quad 4500.
Definition cv.hpp:8229
MS_protein_level_q_value
protein-level q-value: Estimation of the q-value for proteins.
Definition cv.hpp:6021
MS_Continuum_Mass_Spectrum
Continuum Mass Spectrum (profile spectrum): A profile mass spectrum is created when data is recorded ...
Definition cv.hpp:732
UNIMOD_dHex_2_Hex_5_HexNAc_3_Pent_1_
dHex(2)Hex(5)HexNAc(3)Pent(1): DHex(2) Hex(5) HexNAc(3) Pent.
Definition cv.hpp:12663
MS_ten_percent_valley
ten percent valley: An attribute of resolution when the ratio between adjacent signals is 10% of the ...
Definition cv.hpp:576
MS_selected_reaction_monitoring
selected reaction monitoring: Data acquired from specific product ions corresponding to m/z selected ...
Definition cv.hpp:990
MS_Accepted_manuscript
Accepted manuscript: A dataset has one associated manuscript, which has been accepted but no PubMedID...
Definition cv.hpp:9018
UO_specific_volume_unit
specific volume unit: A unit which is a standard measure of the volume of a given mass of substance (...
Definition cv.hpp:13980
MS_mzidLib_ProteoGrouper
mzidLib:ProteoGrouper: A generic and parameterizable protein inference algorithm for mzIdentML files.
Definition cv.hpp:7170
MS_frag__v_ion
frag: v ion: Fragmentation information, type of product: v ion.
Definition cv.hpp:4143
UNIMOD_Label_13C_6_15N_4__Dimethyl_2H_6_13C_2_
Label:13C(6)15N(4)+Dimethyl:2H(6)13C(2): 2H(6) 13C(2) Dimethylated Arg13C(6) 15N(4).
Definition cv.hpp:11301
UNIMOD_MolybdopterinGD
MolybdopterinGD: Molybdenum bis(molybdopterin guanine dinucleotide).
Definition cv.hpp:10182
UNIMOD_Hex_3_HexNAc_2_
Hex(3)HexNAc(2): Hex3HexNAc2.
Definition cv.hpp:9702
MS_microflex_LRF
microflex LRF: Bruker Daltonics' microflex LRF: MALDI TOF.
Definition cv.hpp:5034
MS_second_column_elution_time
second column elution time: The time of elution from the second chromatographic column in the chromat...
Definition cv.hpp:6699
MS_SEQUEST_PeptideRankSp
SEQUEST:PeptideRankSp: The SEQUEST result 'Sp' of 'Rank/Sp' in out file (peptide)....
Definition cv.hpp:4077
MS_SEQUEST_ProcessCV
SEQUEST:ProcessCV: SEQUEST View / Process Input Parameters.
Definition cv.hpp:3720
MS_Reference
Reference: Literature reference associated with one dataset (including the authors,...
Definition cv.hpp:9021
MS_constant_neutral_mass_loss_spectrum
constant neutral mass loss spectrum (constant neutral loss spectrum): A spectrum formed of all produc...
Definition cv.hpp:1548
MS_PolyTools
PolyTools: Bruker PolyTools software.
Definition cv.hpp:2850
UNIMOD_AMTzHexNAc2
AMTzHexNAc2: Photocleavable Biotin + GalNAz on O-GlcNAc.
Definition cv.hpp:11142
UNIMOD_Label_13C_6_15N_4__Methyl_2H_3_13C_1_
Label:13C(6)15N(4)+Methyl:2H(3)13C(1): 2H(3) 13C(1) monomethylated Arg13C(6) 15N(4).
Definition cv.hpp:11298
MS_confident_peptide_qualification
confident peptide qualification: The point of this entry is to define what is meant by confident for ...
Definition cv.hpp:3756
MS_MD_Score_threshold
MD-Score threshold: Threshold for MD-score PTM site location score.
Definition cv.hpp:8127
MS_TMT_reagent_128N
TMT reagent 128N: The name of the sample labelled with the TMT reagent 128N.
Definition cv.hpp:8715
MS_Linked_Scan_at_Constant_B_1__E_E0___1_2___E_OBSOLETE
Linked Scan at Constant B[1-(E/E0)]^1/2 / E: A linked scan performed on a sector instrument that inco...
Definition cv.hpp:1569
MS_modification_index
modification index: The order of modifications to be referenced elsewhere in the document.
Definition cv.hpp:7962
MS_mass_spectrograph_obsolete_OBSOLETE
mass spectrograph obsolete: An instrument that separates a beam of ions according to their mass-to-ch...
Definition cv.hpp:1437
MS_constant_OBSOLETE
constant: When resolution is constant with respect to m/z.
Definition cv.hpp:579
MS_Electronic_Ionization_OBSOLETE
Electronic Ionization: The ionization of an atom or molecule by electrons that are typically accelera...
Definition cv.hpp:501
UO_ton
ton: An imperial mass unit which is equivalent to 1,016.046,9088 kilograms, or 2,240 pounds.
Definition cv.hpp:14907
MS_normalization_to_mean_of_sum_of_all_proteins
normalization to mean of sum of all proteins: Normalization of protein values to the mean of the sum ...
Definition cv.hpp:6000
UNIMOD_Val__Asn
Val->Asn: Val->Asn substitution.
Definition cv.hpp:11901
UO_molal
molal: A unit of concentration which expresses a concentration of a solution of 1 mole per kilogram o...
Definition cv.hpp:14007
MS_2500_QTRAP
2500 QTRAP: SCIEX 2500 QTRAP.
Definition cv.hpp:8187
MS_sample_plate
sample plate: Plate where the sample solution is spotted in a MALDI or similar instrument.
Definition cv.hpp:6231
MS_OpenXQuest_xcorr_xlink
OpenXQuest:xcorr xlink: OpenXQuest's cross-correlation of cross-linked ions subscore.
Definition cv.hpp:8505
MS_ProteoGrouper_PAG_score
ProteoGrouper:PAG score: A score assigned to a protein group (modelled as ProteinAmbiguityGroup in mz...
Definition cv.hpp:7155
MS_detector
detector: The device that detects ions.
Definition cv.hpp:1950
MS_unmapped_protein
unmapped protein: Within the context of a proteogenomics approach, a protein sequence that has not be...
Definition cv.hpp:8643
MS_ProteomeDiscoverer_use_flanking_ions
ProteomeDiscoverer:use flanking ions: Flag for usage of flanking ions.
Definition cv.hpp:7428
MS_protein_group_level_combined_FDRScore
protein group-level combined FDRScore: mzidLibrary Combined FDRScore for proteins specifically obtain...
Definition cv.hpp:7575
MS_isotope_dilution_mass_spectrometry_OBSOLETE
isotope dilution mass spectrometry: A quantitative mass spectrometry technique in which an isotopical...
Definition cv.hpp:1050
MS_Calculate_Probability_Scores
Calculate Probability Scores: Flag indicating that a probability score for the assessment that a repo...
Definition cv.hpp:6720
MS_xi_score
xi:score: The xi result 'Score'.
Definition cv.hpp:8088
MS_PSM_level_quantification_datatype
PSM-level quantification datatype: The data type of the value reported in a QuantLayer for a PSM.
Definition cv.hpp:8628
MS_electron_induced_excitation_in_organics_OBSOLETE
electron-induced excitation in organics: The reaction of an ion with an electron in which the transla...
Definition cv.hpp:1206
MS_tag_search
tag search: A sequence tag search.
Definition cv.hpp:3705
MS_MS1_label_based_raw_feature_quantitation
MS1 label-based raw feature quantitation: MS1 label-based raw feature quantitation.
Definition cv.hpp:6435
UNIMOD_dHex_1_Hex_4_HexNAc_3_Sulf_1_
dHex(1)Hex(4)HexNAc(3)Sulf(1): DHex Hex(4) HexNAc(3) Sulf.
Definition cv.hpp:12498
MS_Progenesis_peptide_normalised_abundance
Progenesis:peptide normalised abundance: The data type normalised abundance for peptides produced by ...
Definition cv.hpp:6087
MS_ProteomeDiscoverer_Xtract_Lowest_MZ_OBSOLETE
ProteomeDiscoverer:Xtract:Lowest MZ: Lowest mass-to-charge (mz) value for spectral peaks in the measu...
Definition cv.hpp:5322
MS_ion_neutral_species_exchange_reaction_OBSOLETE
ion/neutral species exchange reaction: In this reaction an association reaction is accompanied by the...
Definition cv.hpp:1866
MS_PSM_level_probability
PSM-level probability: Probability that the reported peptide ion is truly responsible for some or all...
Definition cv.hpp:7521
MS_CRM_spectrum
CRM spectrum: Spectrum generated from MSn experiment with three or more stages of m/z separation and ...
Definition cv.hpp:2376
UNIMOD_Asp__Xle
Asp->Xle: Asp->Leu/Ile substitution.
Definition cv.hpp:11463
UNIMOD_Triiodothyronine
Triiodothyronine: Triiodo.
Definition cv.hpp:10113
MS_TOPP_FalseDiscoveryRate
TOPP FalseDiscoveryRate: Estimates the false discovery rate on peptide and protein level using decoy ...
Definition cv.hpp:7059
UNIMOD_Propionyl
Propionyl: Propionate labeling reagent light form (N-term & K).
Definition cv.hpp:9513
MS_spin_coating_MALDI_sample_preparation
spin coating MALDI sample preparation: Spin coating MALDI sample preparation method.
Definition cv.hpp:6405
UNIMOD_Glu__Gly
Glu->Gly: Glu->Gly substitution.
Definition cv.hpp:10470
UNIMOD_Ala__Trp
Ala->Trp: Ala->Trp substitution.
Definition cv.hpp:11415
MS_TMT_reagent_128
TMT reagent 128: The name of the sample labelled with the TMT reagent 128.
Definition cv.hpp:8307
MS_external_reference_identifier
external reference identifier: An identifier/accession number to an external reference database.
Definition cv.hpp:3336
MS_TopMG_use_TopFD_feature
TopMG:use TopFD feature: Proteoform identification using TopFD feature file.
Definition cv.hpp:9258
UNIMOD_Piperidine
Piperidine: Piperidination.
Definition cv.hpp:10347
UO_micromole
micromole: A substance unit equal to a millionth of a mol or 10^[-6] mol.
Definition cv.hpp:13920
MS_Genespring_MS
Genespring MS: Software for quantitation and statistical analysis of TOF and Q-TOF LC/MS data.
Definition cv.hpp:2721
MS_Paragon__bias_correction
Paragon: bias correction: The Paragon method setting that controls whether 'Bias Correction' is invok...
Definition cv.hpp:7740
MS_TopMG_mod_file
TopMG:mod file: The text file containing the information of common PTMs.
Definition cv.hpp:9252
UNIMOD_SUMO3549
SUMO3549: SUMOylation by SUMO-2/3 after tryptic cleavage.
Definition cv.hpp:11220
UNIMOD_Maleimide_PEO2_Biotin
Maleimide-PEO2-Biotin: Maleimide-Biotin.
Definition cv.hpp:10350
UNIMOD_dHex_3_Hex_3_HexNAc_4_Pent_1_
dHex(3)Hex(3)HexNAc(4)Pent(1): DHex(3) Hex(3) HexNAc(4) Pent.
Definition cv.hpp:12684
UNIMOD_Carbofuran
Carbofuran: 2,3-dihydro-2,2-dimethyl-7-benzofuranol N-methyl carbamate.
Definition cv.hpp:11235
MS_DB_source_NCBI
DB source NCBI: Database source NCBI.
Definition cv.hpp:4185
MS_Q3_spectrum
Q3 spectrum (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stage ...
Definition cv.hpp:2358
UNIMOD_Amidino
Amidino: Amidino.
Definition cv.hpp:10224
MS_6420_Triple_Quadrupole_LC_MS
6420 Triple Quadrupole LC/MS: The 6420 Quadrupole LC/MS system is a Agilent liquid chromatography ins...
Definition cv.hpp:7782
MS_TopPIC_fixed_modification
TopPIC:fixed modification: Fixed modifications for TopPIC searching.
Definition cv.hpp:9162
UNIMOD_Val__Pro
Val->Pro: Val->Pro substitution.
Definition cv.hpp:11904
UNIMOD_Label_13C_4__Oxidation
Label:13C(4)+Oxidation: Oxidised 13C4 labelled Methionine.
Definition cv.hpp:12048
MS_ProteomeDiscoverer_Use_Neutral_Loss_a_Ions
ProteomeDiscoverer:Use Neutral Loss a Ions: Determines whether a ions with neutral loss are used for ...
Definition cv.hpp:5466
UNIMOD_Arg__Xle
Arg->Xle: Arg->Leu/Ile substitution.
Definition cv.hpp:10689
UNIMOD_dHex_1_Hex_1_HexNAc_2_NeuAc_1_
dHex(1)Hex(1)HexNAc(2)NeuAc(1): DHex Hex HexNAc(2) NeuAc.
Definition cv.hpp:12936
MS_chromatogram_attribute
chromatogram attribute: Chromatogram properties that are associated with a value.
Definition cv.hpp:3120
UNIMOD_Dap_DSP
Dap-DSP: Diaminopimelic acid-DSP monolinked.
Definition cv.hpp:12309
MS_peptide_level_statistical_threshold
peptide-level statistical threshold: Estimated statistical threshold at peptide-level.
Definition cv.hpp:7902
MS_peptide_start_on_chromosome_OBSOLETE
peptide start on chromosome: The overall start position on the chromosome to which a peptide has been...
Definition cv.hpp:8373
MS_micrOTOF_II
micrOTOF II: Bruker Daltonics' micrOTOF II: ESI TOF, Nanospray, APCI, APPI.
Definition cv.hpp:5025
MS_Applied_Biosystems_software
Applied Biosystems software: Applied Biosystems|MDS SCIEX software for data acquisition and analysis.
Definition cv.hpp:2742
MS_MSn_spectrum
MSn spectrum: MSn refers to multi-stage MS2 experiments designed to record product ion spectra where ...
Definition cv.hpp:2364
UNIMOD_Xlink_DTBP_172_
Xlink:DTBP[172]: Intact DTBP crosslinker.
Definition cv.hpp:13554
MS_6210_Time_of_Flight_LC_MS
6210 Time-of-Flight LC/MS: The 6210 Time-of-Flight LC/MS is a Agilent liquid chromatography instrumen...
Definition cv.hpp:2013
MS_param__b_ion_H3PO4_DEPRECATED
param: b ion-H3PO4 DEPRECATED: Ion b-H3PO4: b ion with lost phosphoric acid.
Definition cv.hpp:7800
MS_OBSOLETE_charge_number_OBSOLETE
OBSOLETE charge number: The total charge on an ion divided by the electron charge e....
Definition cv.hpp:1014
MS_isotopic_pattern_area
isotopic pattern area: Area of all peaks belonging to the isotopic pattern of light or heavy peak (e....
Definition cv.hpp:5952
UNIMOD_dHex_1_Hex_3_HexNAc_3_Pent_1_
dHex(1)Hex(3)HexNAc(3)Pent(1): DHex Hex(3) HexNAc(3) Pent.
Definition cv.hpp:12474
UNIMOD_DiART6plex
DiART6plex: Representative mass and accurate mass for 114.
Definition cv.hpp:12288
MS_MS1_feature_area
MS1 feature area: Area of MS1 feature.
Definition cv.hpp:5946
MS_Waters_nativeID_format
Waters nativeID format: Native format defined by function=xsd:positiveInteger process=xsd:nonNegative...
Definition cv.hpp:2979
MS_frag__w_ion
frag: w ion: Fragmentation information, type of product: w ion.
Definition cv.hpp:4146
MS_ProteomeDiscoverer_Min_Precursor_Mass
ProteomeDiscoverer:Min Precursor Mass: Minimum mass limit of a singly charged precursor ion.
Definition cv.hpp:5238
MS_no_PSM_threshold
no PSM threshold: Indicating that no PSM threshold was used.
Definition cv.hpp:7953
MS_peptide_level_score_OBSOLETE
peptide level score: Peptide level score.
Definition cv.hpp:7947
MS_fragment_neutral_loss
fragment neutral loss: This term can describe a neutral loss m/z value that is lost from an ion.
Definition cv.hpp:4977
MS_ProteomeDiscoverer_SEQUEST_Weight_of_w_Ions
ProteomeDiscoverer:SEQUEST:Weight of w Ions: Uses c ions for spectrum matching with this relative fac...
Definition cv.hpp:5493
MS_scan_number_only_nativeID_format__combined_spectra
scan number only nativeID format, combined spectra: Comma separated list of spectra that have been co...
Definition cv.hpp:8424
MS_Q_Tof_micro
Q-Tof micro: Waters oa-ToF based Q-Tof micro.
Definition cv.hpp:930
UO_einstein_per_square_meter_per_second
einstein per square meter per second: An irradiance unit which is equal to one einstein per square me...
Definition cv.hpp:14265
MS_LTQ_Orbitrap_XL
LTQ Orbitrap XL: LTQ Orbitrap XL.
Definition cv.hpp:2277
UNIMOD_dHex_4_Hex_1_HexNAc_2_Kdn_1_
dHex(4)Hex(1)HexNAc(2)Kdn(1): DHex(4) Hex HexNAc(2) Kdn.
Definition cv.hpp:13149
MS_highest_observed_wavelength
highest observed wavelength: Highest wavelength observed in an EMR spectrum.
Definition cv.hpp:2517
MS_3500_QTRAP
3500 QTRAP: SCIEX 3500 QTRAP.
Definition cv.hpp:8190
UO_plaque_forming_unit
plaque forming unit: A dimensionless count unit which a measure of plague forming units in a given vo...
Definition cv.hpp:14430
MS_translation_table_description
translation table description: A URL that describes the translation table used to translate the nucle...
Definition cv.hpp:4668
MS_GENOLINK
GENOLINK: Bruker GENOLINK software.
Definition cv.hpp:2838
MS_MassHunter_Metabolite_ID
MassHunter Metabolite ID: Software for identification of metabolites.
Definition cv.hpp:2715
MS_database_version_OBSOLETE
database version: OBSOLETE: Use attribute in mzIdentML instead. Version of the search database.
Definition cv.hpp:3546
UNIMOD_Hex_5_HexNAc_4_NeuGc_1_
Hex(5)HexNAc(4)NeuGc(1): Hex(5) HexNAc(4) NeuGc.
Definition cv.hpp:12720
UNIMOD_DiART6plex115
DiART6plex115: Accurate mass for DiART6plex 115.
Definition cv.hpp:12291
MS_EE_OBSOLETE
EE (even-electron ion): An ion containing no unpaired electrons in its ground electronic state,...
Definition cv.hpp:1203
UNIMOD_Hex
Hex: Hexose.
Definition cv.hpp:9465
UNIMOD_dHex_2_Hex_2_HexNAc_3_
dHex(2)Hex(2)HexNAc(3): DHex(2) Hex(2) HexNAc(3).
Definition cv.hpp:13344
MS_ProteomeDiscoverer_Spectrum_Selector_Use_New_Precursor_Reevaluation
ProteomeDiscoverer:Spectrum Selector:Use New Precursor Reevaluation: Determines if to use precursor r...
Definition cv.hpp:5670
UNIMOD_Deoxy
Deoxy: Reduction.
Definition cv.hpp:10239
MS_ProteomeDiscoverer_Mascot_Protein_Relevance_Factor
ProteomeDiscoverer:Mascot:Protein Relevance Factor: Specifies a factor that is used in calculating a ...
Definition cv.hpp:5400
MS_light_labeled_peptide
light labeled peptide (unlabeled peptide): A peptide that has not been labelled with heavier-than-usu...
Definition cv.hpp:3381
UNIMOD_DMPO
DMPO: DMPO spin-trap nitrone adduct.
Definition cv.hpp:11322
MS_database_name
database name: The name of the search database (nr, SwissProt or est_human).
Definition cv.hpp:3537
MS_chromosome_name
chromosome name: The name or number of the chromosome to which a given peptide has been mapped.
Definition cv.hpp:8367
MS_ProteomeDiscoverer_Spectrum_Selector_Unrecognized_Mass_Analyzer_Replacements
ProteomeDiscoverer:Spectrum Selector:Unrecognized Mass Analyzer Replacements: Specifies the mass spec...
Definition cv.hpp:5268
UNIMOD_dHex_1_Hex_2_HexNAc_2_NeuAc_2_
dHex(1)Hex(2)HexNAc(2)NeuAc(2): DHex Hex(2) HexNAc(2) NeuAc(2).
Definition cv.hpp:13179
MS_Paul_Ion_trap
Paul Ion trap (quadrupole ion trap): Quadrupole Ion Trap mass analyzer captures the ions in a three d...
Definition cv.hpp:549
UNIMOD_dHex_1_Hex_3_HexNAc_4_NeuAc_1_
dHex(1)Hex(3)HexNAc(4)NeuAc(1): DHex Hex(3) HexNAc(4) NeuAc.
Definition cv.hpp:12615
UNIMOD_maleimide
maleimide: Maleimide.
Definition cv.hpp:10938
MS_TOPP_FeatureLinkerUnlabeledQT
TOPP FeatureLinkerUnlabeledQT: Groups corresponding features from multiple maps using a quality thres...
Definition cv.hpp:6978
MS_ProteinExtractor_UseSequest
ProteinExtractor:UseSequest: Flag indicating to include SEQUEST scoring for calculation of the Protei...
Definition cv.hpp:4704
MS_peptide_consensus_RT
peptide consensus RT: Peptide consensus retention time.
Definition cv.hpp:6642
UO_count_per_nanomolar_second
count per nanomolar second: A rate unit which is equal to one over one nanomolar second.
Definition cv.hpp:14640
UNIMOD_Gln__Lys
Gln->Lys: Gln->Lys substitution.
Definition cv.hpp:10647
UNIMOD_Atto495Maleimide
Atto495Maleimide: High molecular absorption maleimide label for proteins.
Definition cv.hpp:11145
PEFF_DatabaseDescription
DatabaseDescription: Short Description of the PEFF.
Definition cv.hpp:165
UO_cubic_centimeter_per_mole
cubic centimeter per mole: A molar volume unit which is equal to 1 cubic centimeter occupied by one m...
Definition cv.hpp:14073
MS_Profound_ClusterRank
Profound:ClusterRank: The Profound cluster rank.
Definition cv.hpp:4905
MS_protein_group_level_global_FDR
protein group-level global FDR: Estimation of the global false discovery rate of protein groups.
Definition cv.hpp:7557
MS_total_XIC_area
total XIC area: Summed area of all the extracted ion chromatogram for the peptide (e....
Definition cv.hpp:7686
MS_Paragon__modified_data_dictionary_or_parameter_translation
Paragon: modified data dictionary or parameter translation: This metric detects if any changes have b...
Definition cv.hpp:7749
MS______D_______D__
((?<=D))|((?=D)): Regular expression for formic acid.
Definition cv.hpp:4410
MS_ProteomeDiscoverer_SEQUEST_Weight_of_y_Ions
ProteomeDiscoverer:SEQUEST:Weight of y Ions: Uses y ions for spectrum matching with this relative fac...
Definition cv.hpp:5499
UNIMOD_Hex_4_HexNAc_2_Pent_1_
Hex(4)HexNAc(2)Pent(1): Hex(4) HexNAc(2) Pent.
Definition cv.hpp:12453
MS_mzidLib_Csv2Mzid
mzidLib:Csv2Mzid: A converter for CSV files (following OMSSA CSV style) to mzIdentML.
Definition cv.hpp:7167
UNIMOD_His__Ala
His->Ala: His->Ala substitution.
Definition cv.hpp:11595
MS_AXIMA_Assurance_Linear_MALDI_TOF
AXIMA Assurance Linear MALDI-TOF: Shimadzu Biotech AXIMA Assurance Linear MALDI-TOF MS.
Definition cv.hpp:2496
UNIMOD_Gly__Lys
Gly->Lys: Gly->Lys substitution.
Definition cv.hpp:11574
MS_MALDI_Solutions_Microbial_Identification
MALDI Solutions Microbial Identification: Shimadzu Biotech software for data acquisition,...
Definition cv.hpp:6048
MS_protein_level_global_FDR
protein-level global FDR: Estimation of the global false discovery rate of proteins.
Definition cv.hpp:4071
UNIMOD_Met__Ser
Met->Ser: Met->Ser substitution.
Definition cv.hpp:11709
UNIMOD_His__Ser
His->Ser: His->Ser substitution.
Definition cv.hpp:11616
UNIMOD_FMN
FMN: O3-(riboflavin phosphoryl).
Definition cv.hpp:10227
UNIMOD_Methylmalonylation
Methylmalonylation: Methylmalonylation on Serine.
Definition cv.hpp:11118
MS_decoy_DB_type_shuffle
decoy DB type shuffle: Decoy type: Amino acids of protein sequences are used in a random order.
Definition cv.hpp:4755
MS_mzidLib_Omssa2Mzid
mzidLib:Omssa2Mzid: A converter for OMSSA OMX to mzIdentML.
Definition cv.hpp:7161
UNIMOD_Ser__Asp
Ser->Asp: Ser->Asp substitution.
Definition cv.hpp:11841
MS_isotopologue
isotopologue: A molecular entity that differs only in isotopic composition (number of isotopic substi...
Definition cv.hpp:9306
MS_spectrum_identification_result_details
spectrum identification result details: This subsection describes terms which can describe details of...
Definition cv.hpp:4614
MS_PSM_level_global_FDR
PSM-level global FDR: Estimation of the global false discovery rate of peptide spectrum matches.
Definition cv.hpp:7500
MS_MassHunter_Quantitative_Analysis
MassHunter Quantitative Analysis: Software for quantitation of Triple Quadrupole and Quadrupole Time-...
Definition cv.hpp:2712
MS_profile_spectrum
profile spectrum: A profile mass spectrum is created when data is recorded with ion current (counts p...
Definition cv.hpp:726
MS_Cliquid
Cliquid: SCIEX Cliquid software for data analysis and quantitation.
Definition cv.hpp:2685
MS_unspecific_cleavage
unspecific cleavage: Unspecific cleavage.
Definition cv.hpp:6291
UO_milligram_per_square_meter
milligram per square meter: A dose unit which is equal to 1 milligram of a toxic or pharmaceutical su...
Definition cv.hpp:14724
UNIMOD_Gln__Val
Gln->Val: Gln->Val substitution.
Definition cv.hpp:11811
UNIMOD_Hex_2_HexNAc_1_
Hex(2)HexNAc(1): Hex(2) HexNAc.
Definition cv.hpp:12399
UNIMOD_Asp__Gly
Asp->Gly: Asp->Gly substitution.
Definition cv.hpp:10446
MS_sample_mass
sample mass: Total mass of sample used.
Definition cv.hpp:273
UNIMOD_FP_Biotin
FP-Biotin: 10-ethoxyphosphinyl-N-(biotinamidopentyl)decanamide.
Definition cv.hpp:9954
UNIMOD_Carboxymethyl
Carboxymethyl: Iodoacetic acid derivative.
Definition cv.hpp:9387
MS_CID
CID (collision-induced dissociation): The dissociation of an ion after collisional excitation....
Definition cv.hpp:750
MS_Profound_Cluster
Profound:Cluster: The Profound cluster score.
Definition cv.hpp:4902
MS_PIA_protein_inference_filter
PIA:protein inference filter: A filter used by PIA for the protein inference.
Definition cv.hpp:7638
MS_Peak_list_file_URI
Peak list file URI: URI of one of one search engine output file associated to one PX submission.
Definition cv.hpp:8973
UO_picovolt
picovolt: An electric potential difference unit which is equal to one trillionth of a volt or 10^[-12...
Definition cv.hpp:14550
MS_field_ionization
field ionization: The removal of electrons from any species by interaction with a high electric field...
Definition cv.hpp:1242
UO_microliter_per_kilogram
microliter per kilogram: A specific volume unit which is equal to one millionth of a liter per kilogr...
Definition cv.hpp:14394
MS_value_greater_than_zero
value greater than zero: Positive value range.
Definition cv.hpp:7368
MS_sampling_frequency
sampling frequency: The rate of signal sampling (measurement) with respect to time.
Definition cv.hpp:351
MS_PEAKS_Online
PEAKS Online: PEAKS Online software for high throughput data analysis.
Definition cv.hpp:6264
UNIMOD_Hex_2_HexNAc_3_
Hex(2)HexNAc(3): Hex(2) HexNAc(3).
Definition cv.hpp:12897
MS_direct_liquid_introduction
direct liquid introduction: The delivery of a liquid sample into a mass spectrometer for spray or des...
Definition cv.hpp:1188
MS_ProteinExtractor_SequestPeptideScoreThreshold
ProteinExtractor:SequestPeptideScoreThreshold: Only peptides with scores higher than that threshold a...
Definition cv.hpp:4707
UNIMOD_Archaeol
Archaeol: S-diphytanylglycerol diether.
Definition cv.hpp:10143
MS_common_software_input_parameter
common software input parameter: Software input parameter that is shared by more than one software.
Definition cv.hpp:6759
MS_count_of_identified_proteins
count of identified proteins: The number of proteins that have been identified, which must match the ...
Definition cv.hpp:7662
MS_nanoelectrospray
nanoelectrospray: Electrospray ionization at a flow rate less than ~25 nL/min. Nanoelectrospray is sy...
Definition cv.hpp:1764
MS_Spark_Source_Mass_Spectrometry_OBSOLETE
Spark Source Mass Spectrometry: Mass spectrometry using spark ionization.
Definition cv.hpp:1395
MS_MPI
MPI (multiphoton ionization): Photoionization of an atom or molecule in which in two or more photons ...
Definition cv.hpp:1080
MS_high_field_asymmetric_waveform_ion_mobility_spectrometry_OBSOLETE
high-field asymmetric waveform ion mobility spectrometry: The separation of ions between two concentr...
Definition cv.hpp:1230
MS_analysis_attribute
analysis attribute: Attribute of an item in the result of mass spectrometry proteomics data analysis.
Definition cv.hpp:8520
MS_ProteinScape
ProteinScape: Bruker ProteinScape software.
Definition cv.hpp:2871
MS_autoflex
autoflex: Bruker Daltonics' autoflex: MALDI TOF.
Definition cv.hpp:5064
MS_7000B_Triple_Quadrupole_GC_MS
7000B Triple Quadrupole GC/MS: The 7000B Quadrupole GC/MS system is a Agilent gas chromatography inst...
Definition cv.hpp:8829
MS_MD5
MD5: MD5 (Message-Digest algorithm 5) is a cryptographic hash function with a 128-bit hash value used...
Definition cv.hpp:2313
MS_6570_Q_TOF_LC_MS
6570 Q-TOF LC/MS: The 6570 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrum...
Definition cv.hpp:8799
UNIMOD_Pro__Asn
Pro->Asn: Pro->Asn substitution.
Definition cv.hpp:11772
MS_time_array
time array: A data array of relative time offset values from a reference time.
Definition cv.hpp:2439
UNIMOD_Ub_VME
Ub-VME: Ubiquitin vinylmethylester.
Definition cv.hpp:12027
UNIMOD_HexA_2_HexNAc_3_
HexA(2)HexNAc(3): HexA(2) HexNAc(3).
Definition cv.hpp:13668
MS_Trans_Proteomic_Pipeline_software
Trans-Proteomic Pipeline software: A software program that is a component of the Trans-Proteomic Pipe...
Definition cv.hpp:7308
MS_combined_ms_ms___spectral_library_search
combined ms-ms + spectral library search: A combined MS2 (with fragment ions) and spectral library se...
Definition cv.hpp:8685
UNIMOD_dHex_1_Hex_4_HexNAc_2_
dHex(1)Hex(4)HexNAc(2): DHex Hex(4) HexNAc(2).
Definition cv.hpp:13341
MS_ProLuCID_xcorr
ProLuCID:xcorr: The ProLuCID result 'XCorr'.
Definition cv.hpp:8055
UNIMOD_Xle__Ala
Xle->Ala: Leu/Ile->Ala substitution.
Definition cv.hpp:11628
MS_PeptideShaker_PTM_confidence_type
PeptideShaker PTM confidence type: PeptideShaker quality criteria for the confidence of PTM localizat...
Definition cv.hpp:8070
MS_Laser_Ionization_MERGE_OBSOLETE
Laser Ionization MERGE (Laser Desorption): The formation of ions through the interaction of a laser w...
Definition cv.hpp:1293
MS_sum_peak_picking
sum peak picking (area peak picking): Spectral peak processing conducted on the acquired data to conv...
Definition cv.hpp:3093
MS_FIB
FIB (fast ion bombardment): The ionization of any species by the interaction of a focused beam of ion...
Definition cv.hpp:1923
MS_alternating_polarity_mode
alternating polarity mode: Polarities of the scans of a run are alternating, i.e. both positive and n...
Definition cv.hpp:8922
MS_conversion_software
conversion software: Computer software primarily designed to convert data represented in one format t...
Definition cv.hpp:7449
UNIMOD_HN2_mustard
HN2_mustard: Modification by hydroxylated mechloroethamine (HN-2).
Definition cv.hpp:12276
MS_CRF_OBSOLETE
CRF (charge-remote fragmentation): A fragmentation of an even-electron ion in which the cleaved bond ...
Definition cv.hpp:1155
MS_MS2_tag_based_proteingroup_level_quantitation
MS2 tag-based proteingroup level quantitation: MS2 tag-based proteingroup level quantitation.
Definition cv.hpp:6525
MS_QSTAR_XL
QSTAR XL: Applied Biosystems|MDS SCIEX QSTAR XL.
Definition cv.hpp:2643
UNIMOD_Methylphosphonate
Methylphosphonate: Methylphosphonylation.
Definition cv.hpp:10851
MS_fragment_mass_type_average
fragment mass type average: Mass type setting for fragment mass was average isotopic.
Definition cv.hpp:4191
UNIMOD_Met__AspSA
Met->AspSA: Methionine oxidation to aspartic semialdehyde.
Definition cv.hpp:13590
UO_illuminance_unit
illuminance unit: A unit which is a standard measure of the luminous flux incident on a unit area.
Definition cv.hpp:14148
UNIMOD_dHex_3_HexNAc_3_Kdn_1_
dHex(3)HexNAc(3)Kdn(1): DHex(3) HexNAc(3) Kdn.
Definition cv.hpp:13089
MS_mass_spectrum
mass spectrum: A plot of the relative abundance of a beam or other collection of ions as a function o...
Definition cv.hpp:1443
UNIMOD_Octanoyl
Octanoyl: Octanoyl.
Definition cv.hpp:10188
UNIMOD_Nethylmaleimide
Nethylmaleimide: N-ethylmaleimide on cysteines.
Definition cv.hpp:9573
MS_MapNormalizer
MapNormalizer: Normalizes peak intensities in an MS run.
Definition cv.hpp:2952
MS_Agilent_instrument_model
Agilent instrument model: Agilent instrument model.
Definition cv.hpp:2070
UNIMOD_Phe__Lys
Phe->Lys: Phe->Lys substitution.
Definition cv.hpp:11541
UNIMOD_Xlink_DSSO_176_
Xlink:DSSO[176]: Water-quenched monolink of DSSO crosslinker.
Definition cv.hpp:13509
MS_micrOTOF_Q
micrOTOF-Q: Bruker Daltonics' micrOTOF-Q: ESI Q-TOF, Nanospray, APCI, APPI.
Definition cv.hpp:2778
UNIMOD_Ala__His
Ala->His: Ala->His substitution.
Definition cv.hpp:11394
MS_domain_range
domain range: Domain range of a numerical value.
Definition cv.hpp:7362
PEFF_PE
PE: Protein Evidence; A UniprotKB code.
Definition cv.hpp:201
UO_heat_conduction_unit
heat conduction unit: A unit which represents a standard measurement of the spontaneous transfer of t...
Definition cv.hpp:14586
MS_OMSSA_input_parameter
OMSSA input parameter: Search engine input parameters specific to OMSSA.
Definition cv.hpp:6747
UNIMOD_dHex_1_HexNAc_5_
dHex(1)HexNAc(5): DHex HexNAc(5).
Definition cv.hpp:13017
UNIMOD_Trp__Ser
Trp->Ser: Trp->Ser substitution.
Definition cv.hpp:10773
MS_Xevo_TQD
Xevo TQD: Waters quadrupole based Xevo TQD.
Definition cv.hpp:5787
UNIMOD_IMEHex_2_NeuAc_1_
IMEHex(2)NeuAc(1): Glycosylation with IME linked Hex(2) NeuAc.
Definition cv.hpp:12078
MS_Mascot_MinMSMSThreshold
Mascot:MinMSMSThreshold: Mascot peptide match ion score threshold. If between 0 and 1,...
Definition cv.hpp:4368
MS_ion_role_OBSOLETE
ion role: Ion Role.
Definition cv.hpp:2124
MS_ProteinProspector
ProteinProspector: ProteinProspector software for data acquisition and analysis.
Definition cv.hpp:6576
MS_confident_peptide_sequence_number
confident peptide sequence number: This counts the number of peptide sequences without regard to whet...
Definition cv.hpp:3759
UNIMOD_HexNAc_2_
HexNAc(2): HexNAc2.
Definition cv.hpp:9654
UNIMOD_HexNAc_2_dHex_2_
HexNAc(2)dHex(2): HexNAc2dHex2.
Definition cv.hpp:9675
MS_analyzer_scan_offset
analyzer scan offset: Offset between two analyzers in a constant neutral loss or neutral gain scan....
Definition cv.hpp:3102
MS_search_engine_specific_score
search engine specific score: Search engine specific scores.
Definition cv.hpp:3918
UNIMOD_dNIC
dNIC: Deuterated Nicotinic Acid.
Definition cv.hpp:10827
UNIMOD_Unknown_248
Unknown:248: Unidentified modification of 248.1986 found in open search.
Definition cv.hpp:13767
MS_6224_Time_of_Flight_LC_MS
6224 Time-of-Flight LC/MS: The 6224 Time-of-Flight LC/MS is a Agilent liquid chromatography instrumen...
Definition cv.hpp:8808
UO_kilogram_per_cubic_meter
kilogram per cubic meter: A mass unit density which is equal to mass of an object in kilograms divide...
Definition cv.hpp:14052
MS_PSM_level_combined_FDRScore
PSM-level combined FDRScore: mzidLibrary Combined FDRScore for peptide spectrum matches specifically ...
Definition cv.hpp:7518
MS_V8_DE
V8-DE: Cleavage agent V8-DE.
Definition cv.hpp:4353
MS_peptide_consensus_attribute
peptide consensus attribute: Attribute describing a peptide consensus.
Definition cv.hpp:6795
UNIMOD_Hex_6_HexNAc_3_
Hex(6)HexNAc(3): Hex(6) HexNAc(3).
Definition cv.hpp:12546
MS_decoy_DB_from_IPI_cow_OBSOLETE
decoy DB from IPI_cow: Decoy database from a International Protein Index database for Bos taurus.
Definition cv.hpp:4299
MS_MaRiMba
MaRiMba: Software used to predict transitions for selected reaction monitoring experiments based on o...
Definition cv.hpp:3318
MS_MassHunter_BioConfirm
MassHunter BioConfirm: Software for protein characterization.
Definition cv.hpp:2718
UO_deciliter
deciliter: A volume unit which is equal to one tenth of a liter or 10^[-1] L.
Definition cv.hpp:14424
MS_small_molecule_modification_attribute
small molecule modification attribute: Attribute describing a small molecule modification.
Definition cv.hpp:6804
MS_peptide_sequence_level_result_list_attribute
peptide sequence-level result list attribute: General property of all peptide sequences in the list.
Definition cv.hpp:8562
UNIMOD_Hex_2_HexNAc_1_NeuGc_3_
Hex(2)HexNAc(1)NeuGc(3): Hex(2) HexNAc NeuGc(3).
Definition cv.hpp:13170
MS_Acquity_UPLC_PDA
Acquity UPLC PDA: Acquity UPLC Photodiode Array Detector.
Definition cv.hpp:3153
MS_database_source
database source: The organisation, project or laboratory from where the database is obtained (UniProt...
Definition cv.hpp:3534
UO_milli_300010009
milli: A mass unit which is equal to 1/12 the mass of 12C
Definition cv.hpp:14820
UNIMOD_CAMthiopropanoyl
CAMthiopropanoyl: 3-(carbamidomethylthio)propanoyl.
Definition cv.hpp:9885
MS_peak_picking
peak picking: Spectral peak processing conducted on the acquired data to convert profile data to cent...
Definition cv.hpp:369
MS_TOPP_OpenSwathFeatureXMLToTSV
TOPP OpenSwathFeatureXMLToTSV: Converts a featureXML to a mProphet tsv (tab separated values).
Definition cv.hpp:7050
UO_nanogram_per_milliliter
nanogram per milliliter: A mass unit density which is equal to mass of an object in nanograms divided...
Definition cv.hpp:14622
MS_TOPP_FeatureFinderCentroided
TOPP FeatureFinderCentroided: Detects two-dimensional features in centroided LC-MS data.
Definition cv.hpp:6945
UO_microgray
microgray: An absorbed dose unit which is equal to one millionth of a gray or 10^[-6] Gy.
Definition cv.hpp:14223
MS_retention_time_window_width
retention time window width: The full width of a retention time window for a chromatographic peak.
Definition cv.hpp:6135
UO_watt
watt: A power unit which is equal to the power used when work is done at the rate of 1 joule per seco...
Definition cv.hpp:14145
UNIMOD_LG_anhydrolactam
LG-anhydrolactam: Levuglandinyl-lysine anhydrolactam adduct.
Definition cv.hpp:11175
UNIMOD_Asp__Gln
Asp->Gln: Asp->Gln substitution.
Definition cv.hpp:11475
MS_MAT900XP
MAT900XP: ThermoFinnigan MAT900XP MS.
Definition cv.hpp:885
MS_local_retention_time
local retention time: A time interval from the start of chromatography when an analyte exits an unspe...
Definition cv.hpp:3390
MS_splash_key
splash key: Spectral Hash key, an unique identifier for spectra.
Definition cv.hpp:8250
MS_micrOTOF_Q_II
micrOTOF-Q II: Bruker Daltonics' micrOTOF-Q II: ESI Q-TOF, Nanospray, APCI, APPI.
Definition cv.hpp:2781
MS_IPTL_quantitation_analysis
IPTL quantitation analysis: Quantification analysis using a labelling strategy where both peptide ter...
Definition cv.hpp:7083
MS_intensity_normalization
intensity normalization: Normalization of data point intensities.
Definition cv.hpp:4857
UNIMOD_Label_13C_6_15N_4_
Label:13C(6)15N(4): 13C(6) 15N(4) Silac label.
Definition cv.hpp:9828
MS_PTM_localization_attribute
PTM localization attribute: Statistic derived from a post-translational modification localization ana...
Definition cv.hpp:8523
UNIMOD_Hex_4_HexNAc_4_Sulf_1_
Hex(4)HexNAc(4)Sulf(1): Hex(4) HexNAc(4) Sulf.
Definition cv.hpp:12522
MS_MRMaid
MRMaid: A web-based SRM assay design tool whose transitions are generated by mining the millions of i...
Definition cv.hpp:7107
MS_PEAKS_peptideScore
PEAKS:peptideScore: The PEAKS peptide '-10lgP Score'.
Definition cv.hpp:6273
UNIMOD_Gln__Arg
Gln->Arg: Gln->Arg substitution.
Definition cv.hpp:10656
MS_mzidLib_Tandem2Mzid
mzidLib:Tandem2Mzid: A converter for Tandem XML to mzIdentML.
Definition cv.hpp:7164
MS_MS_Numpress_short_logged_float_compression_followed_by_zlib_compression
MS-Numpress short logged float compression followed by zlib compression: Compression using MS-Numpres...
Definition cv.hpp:8664
MS_low_intensity_threshold
low intensity threshold: Threshold below which some action is taken.
Definition cv.hpp:2559
MS_diagnostic_ion_OBSOLETE
diagnostic ion: A product ion whose formation reveals structural or compositional information of its ...
Definition cv.hpp:1653
MS_TMT_reagent_130N
TMT reagent 130N: The name of the sample labelled with the TMT reagent 130N.
Definition cv.hpp:8727
MS_adduct_ion_isotope
adduct ion isotope: Isotope of the matrix molecule M of an adduct formation.
Definition cv.hpp:8853
MS_raw_files_group_attribute
raw files group attribute: Attribute describing, how raw files build a raw file group.
Definition cv.hpp:5883
MS_variation_coefficient
variation coefficient: The coefficient of variation.
Definition cv.hpp:9312
UNIMOD_Benzoyl
Benzoyl: Labeling reagent light form (N-term & K).
Definition cv.hpp:9636
MS_peptide_passes_threshold
peptide passes threshold: A Boolean attribute to determine whether the peptide has passed the thresho...
Definition cv.hpp:7950
UNIMOD_Hex_8_HexNAc_2_
Hex(8)HexNAc(2): Hex(8) HexNAc(2).
Definition cv.hpp:12597
UNIMOD_Hex_4_HexNAc_4_Pent_1_
Hex(4)HexNAc(4)Pent(1): Hex(4) HexNAc(4) Pent.
Definition cv.hpp:12552
MS_ProteoWizard_SeeMS
ProteoWizard SeeMS: An interactive GUI application to view and filter mass spectrometry data in a var...
Definition cv.hpp:7074
UNIMOD_Label_2H_3_
Label:2H(3): Trideuteration.
Definition cv.hpp:9822
MS_SQ_Detector_2
SQ Detector 2: Waters quadrupole based SQ Detector 2.
Definition cv.hpp:7269
UNIMOD_Hex_10_Phos_3_
Hex(10)Phos(3): Hex(10) Phos(3).
Definition cv.hpp:13302
MS_CLINPROT_robot
CLINPROT robot: Bruker CLINPROT robot software.
Definition cv.hpp:2799
MS_MyCompoundID
MyCompoundID: Metabolite identification tool MyCompoundID.
Definition cv.hpp:9066
MS_32_bit_integer
32-bit integer: Signed 32-bit little-endian integer.
Definition cv.hpp:2163
MS_second_OBSOLETE
second: Acquisition time in seconds.
Definition cv.hpp:381
MS_blackbody_infrared_radiative_dissociation
blackbody infrared radiative dissociation: A special case of infrared multiphoton dissociation wherei...
Definition cv.hpp:1146
UNIMOD_Hex_2_Pent_2_Me_1_
Hex(2)Pent(2)Me(1): Hex(2) Pent(2) Me.
Definition cv.hpp:13653
UNIMOD_Acetyl_13C_2_
Acetyl:13C(2): Heavy acetylation.
Definition cv.hpp:12237
MS_SEQUEST_PeptideSp
SEQUEST:PeptideSp: The SEQUEST result 'Sp' in out file (peptide).
Definition cv.hpp:4074
UNIMOD_lapachenole
lapachenole: Lapachenole photochemically added to cysteine.
Definition cv.hpp:10932
MS_mean_charge_array
mean charge array: Array of mean charge values where the mean charge is calculated as a weighted mean...
Definition cv.hpp:7884
MS_compound_identification_confidence_level
compound identification confidence level: Confidence level for annotation of identified compounds as ...
Definition cv.hpp:9111
MS_Sequence_database_filter_types
Sequence database filter types: Filter types which are used to filter a sequence database.
Definition cv.hpp:4938
MS_TOPP_MapAlignerIdentification
TOPP MapAlignerIdentification: Corrects retention time distortions between maps based on common pepti...
Definition cv.hpp:6891
MS_Sequence_database_filters
Sequence database filters: Sequence database filters which actually can contains values,...
Definition cv.hpp:4941
MS_senior_author
senior author: The last of a set of authors associated with a publication or release....
Definition cv.hpp:6549
MS_instrument_specific_scan_attribute
instrument specific scan attribute: Instrument specific scan properties that are associated with a va...
Definition cv.hpp:8031
MS_SymBiot_I
SymBiot I: Applied Biosystems/MDS SCIEX SymBiot I MS.
Definition cv.hpp:948
UNIMOD_Gly__Cys
Gly->Cys: Gly->Cys substitution.
Definition cv.hpp:10509
UNIMOD_Hex_3_HexNAc_1_
Hex(3)HexNAc(1): Hex(3) HexNAc.
Definition cv.hpp:12783
MS_TMT_reagent_130C
TMT reagent 130C: The name of the sample labelled with the TMT reagent 130C.
Definition cv.hpp:8730
MS_DiART_reagent_118
DiART reagent 118: The name of the sample labelled with the DiART reagent 118.
Definition cv.hpp:8748
UNIMOD_Xlink_DMP_140_
Xlink:DMP[140]: Water quenched monolink of DMP crosslinker.
Definition cv.hpp:11346
MS_excludes_supersede_includes
excludes supersede includes: A priority setting specifying that excluded targets have priority over t...
Definition cv.hpp:3471
UO_inch
inch: A length unit which is equal to 0.0254 metres.
Definition cv.hpp:14826
MS_Mascot_ShowDecoyMatches
Mascot:ShowDecoyMatches: If true, then the search results are against an automatically generated deco...
Definition cv.hpp:4386
MS_ProteomeXchange_accession_number
ProteomeXchange accession number: Main identifier of a ProteomeXchange dataset.
Definition cv.hpp:6177
MS_normalized_spectral_abundance_factor
normalized spectral abundance factor: A normalized spectral abundance factor (NSAF).
Definition cv.hpp:8094
MS_TDC
TDC (time-digital converter): A device for converting a signal of sporadic pluses into a digital repr...
Definition cv.hpp:696
MS_SEQUEST_sort_by_RSp
SEQUEST:sort by RSp: Sort order of SEQUEST search results given by the result 'Sp' of 'Rank/Sp' in th...
Definition cv.hpp:3660
UNIMOD_Cys__Oxoalanine
Cys->Oxoalanine: Oxoalanine.
Definition cv.hpp:10125
UNIMOD_Arg__Asn
Arg->Asn: Arg->Asn substitution.
Definition cv.hpp:11829
UNIMOD_Hex_3_HexNAc_2_NeuAc_2_
Hex(3)HexNAc(2)NeuAc(2): Hex(3) HexNAc(2) NeuAc(2).
Definition cv.hpp:13188
UNIMOD_dHex_2_Hex_2_
dHex(2)Hex(2): Hex2 dHex2.
Definition cv.hpp:12420
MS_scanning_method_OBSOLETE
scanning method: Describes the acquisition data type produced by a tandem mass spectrometry experimen...
Definition cv.hpp:321
UO_millisiemens
millisiemens: An electrical conduction unit which is equal to one thousandth of a siemen or 10^[-3] s...
Definition cv.hpp:14799
MS_6320_Ion_Trap_LC_MS
6320 Ion Trap LC/MS: The 6320 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined w...
Definition cv.hpp:2019
UNIMOD_dHex_2_Hex_3_HexA_1_HexNAc_3_Sulf_1_
dHex(2)Hex(3)HexA(1)HexNAc(3)Sulf(1): DHex(2) Hex(3) HexA HexNAc(3) Sulf.
Definition cv.hpp:13254
UO_picosecond
picosecond: A time unit which is equal to 10^[-12] s.
Definition cv.hpp:13893
UO_giga
giga: A prefix in the metric system denoting a factor of ten to the power of 9.
Definition cv.hpp:14673
MS_source_interface_model
source interface model: The source interface model.
Definition cv.hpp:6216
MS_NoEnzyme_OBSOLETE
NoEnzyme:
Definition cv.hpp:3732
MS_ProteomeDiscoverer_Mascot_Weight_of_W_Ions
ProteomeDiscoverer:Mascot:Weight of W Ions: Determines if to use W ions for spectrum matching.
Definition cv.hpp:5658
MS_feature_format
feature format: TopFD feature file format.
Definition cv.hpp:9123
UNIMOD_Lys__His
Lys->His: Lys->His substitution.
Definition cv.hpp:11661
MS_param__y_ion
param: y ion: Parameter information, type of product: y ion with charge on the C-terminal side.
Definition cv.hpp:4212
MS_ProteomeDiscoverer_Number_of_input1_spectra
ProteomeDiscoverer:Number of input1 spectra: Number of spectra from 1+ precursor ions.
Definition cv.hpp:5598
MS_first_stability_region
first stability region: The region of a Mathieu stability diagram closest to the origin....
Definition cv.hpp:1488
MS_Byonic_Protein_LogProb
Byonic:Protein LogProb: The log p-value of the protein.
Definition cv.hpp:7248
UO_yard
yard: A length unit which is equal to 0.9144 metres, or 3 feet.
Definition cv.hpp:14835
MS_SpectraST
SpectraST: SpectraST was used to analyze the spectra.
Definition cv.hpp:4836
MS_dwell_time
dwell time: The time spent gathering data across a peak.
Definition cv.hpp:2112
MS_Phenyx_Turbo_Coverage
Phenyx:Turbo:Coverage: The minimal peptide sequence coverage value, expressed in percent,...
Definition cv.hpp:4551
MS_APPI_OBSOLETE
APPI (Atmostpheric Pressure Photoionization): Atmospheric pressure chemical ionization in which the r...
Definition cv.hpp:1143
MS_residue_pair_level_global_FDR
residue-pair-level global FDR: Estimation of the global false discovery rate of residue-pairs in cros...
Definition cv.hpp:8490
MS_Phenyx_Peptides2
Phenyx:Peptides2: Second number of phenyx result "#Peptides".
Definition cv.hpp:4584
MS_SRM_transition_attribute
SRM transition attribute: Attribute associated with a SRM transition.
Definition cv.hpp:7113
MS_Weierstrass_transform
Weierstrass transform (Gaussian smoothing): Reduces intensity spikes by convolving the data with a on...
Definition cv.hpp:3030
MS_DTASelect_format
DTASelect format: DTASelect file format.
Definition cv.hpp:4791
MS_Scaffold_Peptide_Probability
Scaffold:Peptide Probability: Scaffold peptide probability score.
Definition cv.hpp:5103
UNIMOD_Delta_S__1_Se_1_
Delta:S(-1)Se(1): Selenium replaces sulfur.
Definition cv.hpp:9711
UNIMOD_dHex_2_Hex_2_HexNAc_2_NeuGc_1_
dHex(2)Hex(2)HexNAc(2)NeuGc(1): DHex(2) Hex(2) HexNAc(2) NeuGc —OR— Hex(3) HexNAc(2) dHex NeuAc —OR— ...
Definition cv.hpp:13110
MS_API_100
API 100: Applied Biosystems/MDS SCIEX API 100 MS.
Definition cv.hpp:8208
MS_PAnalyzer_non_conclusive_protein
PAnalyzer:non-conclusive protein: A protein sharing all its matched peptides with either conclusive o...
Definition cv.hpp:7092
MS_quantitation_software_version_OBSOLETE
quantitation software version: Quantitation software version.
Definition cv.hpp:3879
PEFF_DbName
DbName: Sequence Database Name.
Definition cv.hpp:129
MS_target_list
target list: A list of peptides or compounds and their expected m/z coordinates that can be used to c...
Definition cv.hpp:3462
MS_OpenXQuest_intsum
OpenXQuest:intsum: OpenXQuest's sum of matched peak intensity subscore.
Definition cv.hpp:8514
MS_precursor_ion_spectrum
precursor ion spectrum: Spectrum generated by scanning precursor m/z while monitoring a fixed product...
Definition cv.hpp:1593
UNIMOD_methylol
methylol: Formaldehyde induced modifications.
Definition cv.hpp:13503
UNIMOD_Thr__Phe
Thr->Phe: Thr->Phe substitution.
Definition cv.hpp:11871
MS_ITRAQAnalyzer
ITRAQAnalyzer: Software for iTRAQ workflow. Extracts and normalizes iTRAQ information from an MS expe...
Definition cv.hpp:6834
UNIMOD_dHex_1_HexNAc_3_
dHex(1)HexNAc(3): DHex HexNAc(3).
Definition cv.hpp:12816
MS_data_processing_action
data processing action: Data processing attribute used to describe the type of data processing perfor...
Definition cv.hpp:2238
MS_ProteomeDiscoverer_Non_Fragment_Filter_Remove_Precursor_Overtones
ProteomeDiscoverer:Non-Fragment Filter:Remove Precursor Overtones: Determines whether precursor overt...
Definition cv.hpp:5295
UNIMOD_dHex_2_Hex_4_HexNAc_3_NeuAc_1_Sulf_1_
dHex(2)Hex(4)HexNAc(3)NeuAc(1)Sulf(1): DHex(2) Hex(4) HexNAc(3) NeuAc Sulf.
Definition cv.hpp:12711
MS_vendor_OBSOLETE
vendor: Name of instrument vendor.
Definition cv.hpp:354
MS_SRM_peptide_level_quantitation
SRM peptide level quantitation: Selected Reaction Monitoring peptide level quantitation.
Definition cv.hpp:7293
MS_decoy_DB_from_UniProtKB_Swiss_Prot_OBSOLETE
decoy DB from UniProtKB/Swiss-Prot: Decoy database from a Swiss-Prot protein sequence database.
Definition cv.hpp:4293
UO_microampere
microampere: An electric current unit current which is equal to one millionth of an ampere or 10^[-6]...
Definition cv.hpp:13917
MS_Platform_ICP
Platform ICP: Waters Platform ICP MS.
Definition cv.hpp:918
UNIMOD_Lys__Asn
Lys->Asn: Lys->Asn substitution.
Definition cv.hpp:10542
UNIMOD_DiLeu4plex
DiLeu4plex: Accurate mass for DiLeu 116 isobaric tag.
Definition cv.hpp:12159
MS_DiLeu_reagent_118
DiLeu reagent 118: The name of the sample labelled with the DiLeu reagent 118.
Definition cv.hpp:8766
UNIMOD_O_Methylphosphate
O-Methylphosphate: O-Methylphosphorylation.
Definition cv.hpp:10839
MS_MS_GF_PEP
MS-GF:PEP: MS-GF posterior error probability.
Definition cv.hpp:6618
MS_PSM_level_q_value
PSM-level q-value: Estimation of the q-value for peptide spectrum matches.
Definition cv.hpp:7512
MS_intensity_unit
intensity unit: Intensity units are commonly arbitrary. Detected in counts per second (cps) when usin...
Definition cv.hpp:405
MS_sample
sample: Terms to describe the sample.
Definition cv.hpp:1965
MS_study_variable_average_function
study variable average function: Function used to calculate the study variable quantification value.
Definition cv.hpp:9069
UNIMOD_Ser__Xle
Ser->Xle: Ser->Leu/Ile substitution.
Definition cv.hpp:10722
MS_ProteomeDiscoverer_Use_Average_Precursor_Mass_OBSOLETE
ProteomeDiscoverer:Use Average Precursor Mass: Use average mass for the precursor.
Definition cv.hpp:5412
MS_SRM_proteingroup_level_quantitation
SRM proteingroup level quantitation: Selected Reaction Monitoring proteingroup level quantitation.
Definition cv.hpp:7299
UNIMOD_Cation_Ag
Cation:Ag: Replacement of proton by silver.
Definition cv.hpp:11202
UNIMOD_HexN
HexN: Hexosamine.
Definition cv.hpp:10260
UNIMOD_DimethylamineGMBS
DimethylamineGMBS: Modified GMBS X linker.
Definition cv.hpp:11169
UNIMOD_dHex_1_Hex_5_HexNAc_3_
dHex(1)Hex(5)HexNAc(3): DHex Hex(5) HexNAc(3).
Definition cv.hpp:12537
MS_ProteomeDiscoverer_Use_Neutral_Loss_z_Ions
ProteomeDiscoverer:Use Neutral Loss z Ions: Determines whether z ions with neutral loss are used for ...
Definition cv.hpp:5475
MS_ProteomeDiscoverer_min_peptide_length
ProteomeDiscoverer:min peptide length: Minimum peptide length.
Definition cv.hpp:7416
MS_spectral_counting_quantitation_analysis
spectral counting quantitation analysis: Spectral counting workflow (number of identified MS2 spectra...
Definition cv.hpp:5922
MS_spectrum_generation_information
spectrum generation information: Vocabularies describing the spectrum generation information.
Definition cv.hpp:4773
UO_amount_per_container
amount per container: A concentration unit which is a standard measure of the amount of a substance i...
Definition cv.hpp:14625
MS_XCMS_maxo
XCMS:maxo: Feature intensity produced by XCMS findPeaks() from maximum peak intensity.
Definition cv.hpp:8916
MS_sequence_coverage
sequence coverage: The percent coverage for the protein based upon the matched peptide sequences (can...
Definition cv.hpp:3738
MS_focal_plane_collector
focal plane collector: A detector for spatially disperse ion beams in which all ions simultaneously i...
Definition cv.hpp:1617
UO_micron_pixel
micron pixel: A spatial resolution unit which is equal to a pixel size of one micrometer.
Definition cv.hpp:14520
MS_DBExporter
DBExporter: Exports data from an OpenMS database to a file.
Definition cv.hpp:2931
UNIMOD_Trp__Gly
Trp->Gly: Trp->Gly substitution.
Definition cv.hpp:10782
MS_mass_type_settings
mass type settings: The type of mass difference value to be considered by the search engine (monoisot...
Definition cv.hpp:4059
MS_SEQUEST_SequenceHeaderFilter
SEQUEST:SequenceHeaderFilter: String in the header of a sequence entry for that entry to be searched.
Definition cv.hpp:3582
UNIMOD_Sulfide
Sulfide: Persulfide.
Definition cv.hpp:10173
MS_Conversion_to_mzML
Conversion to mzML: Conversion of a file format to Proteomics Standards Initiative mzML file format.
Definition cv.hpp:2241
MS_run_attribute
run attribute: Properties of the described run.
Definition cv.hpp:3267
UO_candela_per_square_meter
candela per square meter: A luminance unit which is equal to a luminous intensity of one candela radi...
Definition cv.hpp:14058
UNIMOD_Tripalmitate
Tripalmitate: N-acyl diglyceride cysteine.
Definition cv.hpp:9495
UO_unit_of_molality
unit of molality: A concentration unit which is a standard measure of the number of moles of a given ...
Definition cv.hpp:14004
UNIMOD_Asp__Pro
Asp->Pro: Asp->Pro substitution.
Definition cv.hpp:11472
MS_quantification_file_format
quantification file format: File format containing quantification results.
Definition cv.hpp:6672
MS_translation_start_codons
translation start codons: The translation start codons used to translate the nucleotides to amino aci...
Definition cv.hpp:4629
UNIMOD_dHex_3_Hex_2_HexA_1_HexNAc_2_Sulf_1_
dHex(3)Hex(2)HexA(1)HexNAc(2)Sulf(1): DHex(3) Hex(2) HexA HexNAc(2) Sulf.
Definition cv.hpp:13155
UNIMOD_Can_FP_biotin
Can-FP-biotin: 6-N-biotinylaminohexyl isopropyl phosphate.
Definition cv.hpp:9969
MS_SEQUEST_DescriptionLines
SEQUEST:DescriptionLines: Number of full protein descriptions to show for top N peptides.
Definition cv.hpp:3525
MS_negative_ion_OBSOLETE
negative ion: An atomic or molecular species having a net negative electric charge.
Definition cv.hpp:1683
MS_6410_Triple_Quadrupole_LC_MS
6410 Triple Quadrupole LC/MS: The 6410 Quadrupole LC/MS system is a Agilent liquid chromatography ins...
Definition cv.hpp:2028
UNIMOD_Gln__Asn
Gln->Asn: Gln->Asn substitution.
Definition cv.hpp:11802
MS_flow_injection_analysis
flow injection analysis: Sample is directly injected or infused into the ionization source.
Definition cv.hpp:453
UNIMOD_Label_13C_9__Phospho
Label:13C(9)+Phospho: C13 label (Phosphotyrosine).
Definition cv.hpp:9732
MS_Data_derived_from_previous_dataset
Data derived from previous dataset: One dataset is a reanalysis of previously published data.
Definition cv.hpp:9012
MS_higher_energy_beam_type_collision_induced_dissociation
higher energy beam-type collision-induced dissociation: A collision-induced dissociation process wher...
Definition cv.hpp:7893
MS_ProteomeDiscoverer_Non_Fragment_Filter_Remove_Precursor_Peak
ProteomeDiscoverer:Non-Fragment Filter:Remove Precursor Peak: Determines whether precursor artifact p...
Definition cv.hpp:5298
MS_Analyst
Analyst: SCIEX or Applied Biosystems|MDS SCIEX software for data acquisition.
Definition cv.hpp:2262
MS_small_molecule_quantification_datatype
small molecule quantification datatype: The value reported in a small molecule quantification.
Definition cv.hpp:9081
MS_InChIKey
InChIKey: Unique chemical structure identifier for chemical compounds.
Definition cv.hpp:9105
MS_ProteomeDiscoverer_Strict_Score_Threshold
ProteomeDiscoverer:Strict Score Threshold: Specifies the threshold value for strict scoring.
Definition cv.hpp:7584
UNIMOD_dHex_1_Hex_1_HexNAc_3_NeuAc_1_Sulf_1_
dHex(1)Hex(1)HexNAc(3)NeuAc(1)Sulf(1): DHex Hex HexNAc(3) NeuAc Sulf.
Definition cv.hpp:13080
UNIMOD_Hex_6_Phos_1_
Hex(6)Phos(1): Hex(6) Phos.
Definition cv.hpp:12960
MS_fed_supply_electrospray
fed supply electrospray: The sprayer is continuously fed with sample.
Definition cv.hpp:6249
MS_ultrafleXtreme
ultrafleXtreme: Bruker Daltonics' ultrafleXtreme: MALDI TOF.
Definition cv.hpp:5037
UNIMOD_Hex_1_Pent_1_
Hex(1)Pent(1): Hex Pent.
Definition cv.hpp:12363
MS_custom_unreleased_software_tool
custom unreleased software tool: A software tool that has not yet been released. The value should des...
Definition cv.hpp:3084
MS_PSM_level_identification_statistic
PSM-level identification statistic: Identification confidence metric for a peptide spectrum match.
Definition cv.hpp:7491
MS_TOPP_spectra_filter
TOPP spectra filter: Spectra filter component of the TOPP software.
Definition cv.hpp:6858
UNIMOD_BADGE
BADGE: Bisphenol A diglycidyl ether derivative.
Definition cv.hpp:10293
MS_TopMG_input_parameter
TopMG input parameter: Search engine input parameters specific to TopMG.
Definition cv.hpp:9225
CVID_Unknown
Definition cv.hpp:114
MS_HCTcontrol
HCTcontrol: Bruker software for data acquisition.
Definition cv.hpp:2844
UNIMOD_Decanoyl
Decanoyl: Lipid.
Definition cv.hpp:10245
MS_n_terminal_flanking_residue
n-terminal flanking residue: The residue preceding the first amino acid in the peptide sequence as it...
Definition cv.hpp:3795
UNIMOD_dichlorination
dichlorination: Dichlorination.
Definition cv.hpp:11151
MS_TOPP_OMSSAAdapter
TOPP OMSSAAdapter: Identifies MS2 spectra using the external program OMSSA.
Definition cv.hpp:6999
MS_selected_ion_current_chromatogram
selected ion current chromatogram: Chromatogram created by creating an array of the measurements of a...
Definition cv.hpp:2550
MS_thermal_ionization
thermal ionization: The ionization of a neutral species through contact with a high temperature surfa...
Definition cv.hpp:1794
UO_pi
pi: A dimensionless unit which denoted an irrational real number, approximately equal to 3....
Definition cv.hpp:14361
UNIMOD_Acetyl
Acetyl: Acetylation.
Definition cv.hpp:9372
MS_quattro_micro
quattro micro: Waters (triple) quadrupole based micro.
Definition cv.hpp:939
MS_molecule
molecule: A molecules is a fundamental component of a chemical compound that is the smallest part of ...
Definition cv.hpp:3273
MS_ProteomeDiscoverer_Peptide_Without_Protein_XCorr_Threshold
ProteomeDiscoverer:Peptide Without Protein XCorr Threshold: XCorr threshold for storing peptides that...
Definition cv.hpp:6717
MS_orthogonal_extraction_OBSOLETE
orthogonal extraction: The pulsed acceleration of ions perpendicular to their direction of travel int...
Definition cv.hpp:1512
MS_isotopologue_MS_peak
isotopologue MS peak: The described isotopologue mass spectrometric signal. The value slot contains a...
Definition cv.hpp:9297
MS_SEQUEST_CullTo
SEQUEST:CullTo: Specify cull string as value of the CVParam.
Definition cv.hpp:3786
UNIMOD_DiART6plex116_119
DiART6plex116/119: Accurate mass for DiART6plex 116 and 119.
Definition cv.hpp:12294
UNIMOD_dHex_4_HexNAc_3_Kdn_1_
dHex(4)HexNAc(3)Kdn(1): DHex(4) HexNAc(3) Kdn.
Definition cv.hpp:13167
MS_TopPIC_proteoform_level_cutoff_type
TopPIC:proteoform-level cutoff type: Proteoform-level cutoff type for filtering identified proteoform...
Definition cv.hpp:9186
MS_impact_HD
impact HD: Bruker Daltonics' impact HD.
Definition cv.hpp:8460
UNIMOD_Hex_2_HexNAc_2_NeuGc_1_
Hex(2)HexNAc(2)NeuGc(1): Hex(2) HexNAc(2) NeuGc.
Definition cv.hpp:12954
MS_InternalCalibration
InternalCalibration: Applies an internal calibration.
Definition cv.hpp:2946
UNIMOD_Pro__Phe
Pro->Phe: Pro->Phe substitution.
Definition cv.hpp:11760
MS_PeakPicker_OBSOLETE
PeakPicker: Finds mass spectrometric peaks in profile mass spectra.
Definition cv.hpp:2958
MS_ProteoWizard_software
ProteoWizard software: ProteoWizard software for data processing and analysis. Primarily developed by...
Definition cv.hpp:2505
MS_ProteomeDiscoverer_Spectrum_Grouper_Allow_MS_Order_Mismatch
ProteomeDiscoverer:Spectrum Grouper:Allow MS Order Mismatch: Determines whether spectra from differen...
Definition cv.hpp:5304
MS_binomial_smoothing
binomial smoothing (Gaussian smoothing): Reduces intensity spikes by convolving the data with a one-d...
Definition cv.hpp:3027
UNIMOD_MDCC
MDCC: Covalent linkage of maleimidyl coumarin probe (Molecular Probes D-10253).
Definition cv.hpp:11049
UNIMOD_2_nitrobenzyl
2-nitrobenzyl: Tyrosine caged with 2-nitrobenzyl (ONB).
Definition cv.hpp:11355
MS_ProteomeDiscoverer_SEQUEST_Weight_of_c_Ions
ProteomeDiscoverer:SEQUEST:Weight of c Ions: Uses c ions for spectrum matching with this relative fac...
Definition cv.hpp:5484
UNIMOD_Glu__Arg
Glu->Arg: Glu->Arg substitution.
Definition cv.hpp:11511
MS_spectral_library_search
spectral library search: A search using a library of spectra.
Definition cv.hpp:3591
UNIMOD_Phytochromobilin
Phytochromobilin: Phytochromobilin.
Definition cv.hpp:10089
UO_month
month: A time unit which is approximately equal to the length of time of one of cycle of the moon's p...
Definition cv.hpp:13908
MS_msmsEval_quality
msmsEval quality: This term reports the quality of the spectrum assigned by msmsEval.
Definition cv.hpp:4482
MS_SEQUEST_Sum
SEQUEST:Sum:
Definition cv.hpp:4530
UO_nanogray
nanogray: An absorbed dose unit which is equal to one thousandth of a millionth of a gray or 10^[-9] ...
Definition cv.hpp:14229
UNIMOD_Hex_1_HexA_1_
Hex(1)HexA(1): Hex HexA.
Definition cv.hpp:12366
UNIMOD_dHex_1_Hex_3_HexNAc_3_
dHex(1)Hex(3)HexNAc(3): DHex Hex(3) HexNAc(3).
Definition cv.hpp:13347
MS_frag__y_ion
frag: y ion: Fragmentation information, type of product: y ion.
Definition cv.hpp:4086
MS_SEQUEST_summary
SEQUEST summary: Source file for this mzIdentML was a SEQUEST summary page (proteins).
Definition cv.hpp:4161
UNIMOD_Label_18O_2_
Label:18O(2): O18 label at both C-terminal oxygens.
Definition cv.hpp:9744
MS_normalized_protein_value
normalized protein value: Normalized protein value.
Definition cv.hpp:5970
MS_PeptideShaker_protein_confidence_type
PeptideShaker protein confidence type: PeptideShaker quality criteria for the confidence of protein i...
Definition cv.hpp:8079
MS_mean_of_spectra
mean of spectra: Spectra is combined by calculating the mean of the spectra.
Definition cv.hpp:2334
UO_parts_per_thousand
parts per thousand: A dimensionless concentration notation which denotes the amount of a given substa...
Definition cv.hpp:14301
UNIMOD_cGMP
cGMP: S-guanylation.
Definition cv.hpp:11004
MS_ProteinExtractor_MascotUseIdentityScore
ProteinExtractor:MascotUseIdentityScore:
Definition cv.hpp:4698
UNIMOD_MM_diphenylpentanone
MM-diphenylpentanone: 3-methyl-5-(methylamino)-1,3-diphenylpentan-1-one.
Definition cv.hpp:12147
MS_DataAnalysis
DataAnalysis: Bruker software for data analysis.
Definition cv.hpp:2826
MS_ProteomeDiscoverer_max_differential_modifications
ProteomeDiscoverer:max differential modifications: Maximum dynamic modifications per PSM.
Definition cv.hpp:7410
MS_Clostripain
Clostripain (Arg-C): Endoproteinase Arg-C.
Definition cv.hpp:4317
MS_PeptideShaker_protein_group_score
PeptideShaker protein group score: The probability based PeptideShaker protein group score.
Definition cv.hpp:7860
UNIMOD_Diisopropylphosphate
Diisopropylphosphate: O-Diisopropylphosphorylation.
Definition cv.hpp:10026
UNIMOD_Homocysteic_acid
Homocysteic_acid: Methionine oxidation to homocysteic acid.
Definition cv.hpp:12267
UNIMOD_dHex_3_Hex_1_HexNAc_2_Kdn_1_
dHex(3)Hex(1)HexNAc(2)Kdn(1): DHex(3) Hex HexNAc(2) Kdn.
Definition cv.hpp:13062
MS_PIA_FDRScore_calculated
PIA:FDRScore calculated: Indicates whether the FDR score was calculated for the input file.
Definition cv.hpp:7620
MS_site_global_FDR
site:global FDR: Estimation of global false discovery rate of peptides with a post-translational modi...
Definition cv.hpp:7467
MS_frag__internal_ya_ion
frag: internal ya ion: Fragmentation information, type of product: internal ya ion.
Definition cv.hpp:4506
MS_Mascot_ProteinScoringMethod
Mascot:ProteinScoringMethod: Mascot protein scoring method; either 'Standard' or 'MudPIT'.
Definition cv.hpp:4365
MS_leukocyte_elastase
leukocyte elastase: Enzyme leukocyte elastase (EC 3.4.21.37).
Definition cv.hpp:6159
UNIMOD_Hydroxytrimethyl
Hydroxytrimethyl: 5-hydroxy-N6,N6,N6-trimethyl.
Definition cv.hpp:10236
MS_SCIEX_API_III_format
SCIEX API III format: PE SCIEX peak list file format.
Definition cv.hpp:4167
UO_yotta
yotta: A prefix in the metric system denoting a factor of ten to the power of 24.
Definition cv.hpp:14655
MS_TOPP_InspectAdapter
TOPP InspectAdapter: Identifies MS2 spectra using the external program Inspect.
Definition cv.hpp:6990
UNIMOD_Cation_K
Cation:K: Replacement of proton by potassium.
Definition cv.hpp:10368
MS_product_ion_attribute
product ion attribute: Fragmentation information like ion types.
Definition cv.hpp:4089
MS_radial_ejection_linear_ion_trap
radial ejection linear ion trap: A linear ion trap mass spectrometer where ions are ejected along the...
Definition cv.hpp:558
UNIMOD_Label_18O_1_
Label:18O(1): O18 Labeling.
Definition cv.hpp:9810
MS_ALEX123
ALEX123: Analysis of lipid experiments 123, a calculator with m/z values of intact lipid molecules (M...
Definition cv.hpp:9354
UNIMOD_dHex_4_Hex_3_HexNAc_3_
dHex(4)Hex(3)HexNAc(3): DHex(4) Hex(3) HexNAc(3).
Definition cv.hpp:13266
MS_ProteomeDiscoverer_Default_FDR_calculator
ProteomeDiscoverer:Default FDR calculator: The default FDR calculator as globally unique identifier (...
Definition cv.hpp:7143
MS_experimental_condition__disease_
experimental condition 'disease': The experimental condition is 'disease' in contrast to 'healthy'.
Definition cv.hpp:5850
UNIMOD_4_ONE
4-ONE: 4-Oxononenal (ONE).
Definition cv.hpp:10833
UO_femtomolar
femtomolar: A unit of molarity which is equal to 10^[-15] M.
Definition cv.hpp:14022
MS_PureDisk
PureDisk: BrukerPureDisk software.
Definition cv.hpp:2874
MS_Bruker_Daltonics_micrOTOF_series
Bruker Daltonics micrOTOF series: Bruker Daltonics' micrOTOF series.
Definition cv.hpp:5013
MS_TOPP_PeakPickerWavelet
TOPP PeakPickerWavelet: Finds mass spectrometric peaks with a wavelet algorithm in low-resoluted prof...
Definition cv.hpp:6855
MS_neutralization_reionization_mass_spectrometry
neutralization reionization mass spectrometry: With this technique, m/z selected ions form neutrals b...
Definition cv.hpp:1329
MS_spControl
spControl: Bruker software for data acquisition.
Definition cv.hpp:2880
MS_X_Tandem_xml_format
X!Tandem xml format: Source file for this mzIdentML was in X!Tandem xml file format.
Definition cv.hpp:4611
MS_Pegasus
Pegasus: LECO GC time-of-flight mass spectrometer.
Definition cv.hpp:5823
MS_Xevo_G2_Q_Tof
Xevo G2 Q-Tof: Waters oa-ToF based Xevo G2 Q-Tof.
Definition cv.hpp:5763
UNIMOD_GGQ
GGQ: SUMOylation leaving GlyGlyGln.
Definition cv.hpp:12096
MS_MALDI_Synapt_G2_S_MS
MALDI Synapt G2-S MS: Waters oa-ToF based MALDI Synapt G2-S MS.
Definition cv.hpp:5736
MS_continuous_mass_spectrum
continuous mass spectrum (profile spectrum): A profile mass spectrum is created when data is recorded...
Definition cv.hpp:729
MS_Lipid_Pro
Lipid-Pro: A computational lipid identification solution for untargeted lipidomics on data-independen...
Definition cv.hpp:9339
MS_Paragon__sample_type
Paragon: sample type: The Paragon method setting indicating the type of sample at the high level,...
Definition cv.hpp:7716
MS_ProteomeDiscoverer_2__Static_Modification_OBSOLETE
ProteomeDiscoverer:2. Static Modification: ProteomeDiscoverer's 2nd static post-translational modific...
Definition cv.hpp:6687
MS_feature_list_attribute
feature list attribute: Attribute describing a feature list.
Definition cv.hpp:5889
MS_PIA_protein_inference_scoring
PIA:protein inference scoring: The used scoring method for the protein inference using PIA.
Definition cv.hpp:7641
MS_modification_parameters
modification parameters: Modification parameters for the search engine run.
Definition cv.hpp:3648
MS_mass_table_options
mass table options: Root node for options for the mass table used.
Definition cv.hpp:4470
MS_MAT95XP_Trap
MAT95XP Trap: ThermoFinnigan MAT95XP Trap MS.
Definition cv.hpp:894
MS_Th
Th (m/z): Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an...
Definition cv.hpp:390
MS_protein_pair_level_global_FDR
protein-pair-level global FDR: Estimation of the global false discovery rate of proteins-pairs in cro...
Definition cv.hpp:8487
MS_TopMG_proteoform_level_FDR
TopMG:proteoform-level FDR: TopMG proteoform-level FDR.
Definition cv.hpp:9279
MS_AutoSpec_Premier
AutoSpec Premier: Waters AutoSpec Premier magnetic sector instrument.
Definition cv.hpp:7278
UNIMOD_FNEM
FNEM: Fluorescein-5-maleimide.
Definition cv.hpp:10338
MS_single_reaction_monitoring_OBSOLETE
single reaction monitoring: This term is not recommended. See Selected Reaction Monitoring.
Definition cv.hpp:627
MS_target_SRM_transition
target SRM transition: A transition used to target a specific compound that may be in the sample.
Definition cv.hpp:6456
UO_sievert
sievert: A dose equivalent unit which is equal to the absorption of one joule of radiation energy by ...
Definition cv.hpp:14211
MS_MS_GF_Energy
MS-GF:Energy: MS-GF energy score.
Definition cv.hpp:6603
MS_6520A_Quadrupole_Time_of_Flight_LC_MS
6520A Quadrupole Time-of-Flight LC/MS: The 6520A Quadrupole Time-of-Flight LC/MS is a Agilent liquid ...
Definition cv.hpp:2700
MS_peptide_level_scoring
peptide-level scoring: Peptide-level scoring performed.
Definition cv.hpp:7920
MS_SEQUEST_consensus_score
SEQUEST:consensus score: The SEQUEST result 'Consensus Score'.
Definition cv.hpp:3948
MS_fast_evaporation_MALDI_sample_preparation
fast evaporation MALDI sample preparation: Fast-evaporation MALDI sample preparation method.
Definition cv.hpp:6396
MS_frag__b_ion
frag: b ion: Fragmentation information, type of product: b ion.
Definition cv.hpp:4098
MS_6510_Quadrupole_Time_of_Flight_LC_MS
6510 Quadrupole Time-of-Flight LC/MS: The 6510 Quadrupole Time-of-Flight LC/MS is a Agilent liquid ch...
Definition cv.hpp:2697
UNIMOD_Trp__Hydroxykynurenin
Trp->Hydroxykynurenin: Tryptophan oxidation to hydroxykynurenin.
Definition cv.hpp:9999
MS_appearance_energy_OBSOLETE
appearance energy: The minimum energy that must be imparted to an atom or molecule to produce a speci...
Definition cv.hpp:1002
MS_noise_array
noise array: A data array of noise values.
Definition cv.hpp:8646
UNIMOD_His__Phe
His->Phe: His->Phe substitution.
Definition cv.hpp:11604
MS_modification_specificity_peptide_N_term
modification specificity peptide N-term: As parameter for search engine: apply the modification only ...
Definition cv.hpp:4002
MS_septum
septum: A disc composed of a flexible material that seals the entrance to the reservoir....
Definition cv.hpp:483
UNIMOD_Hex_3_
Hex(3): Hex3.
Definition cv.hpp:9657
UNIMOD_Tyr__Gln
Tyr->Gln: Tyr->Gln substitution.
Definition cv.hpp:11982
MS_MaxQuant_PTM_Score
MaxQuant:PTM Score: The PTM score from MaxQuant software.
Definition cv.hpp:6366
MS_ACQUITY_UPLC_H_Class
ACQUITY UPLC H-Class: Waters LC-system ACQUITY UPLC H-Class.
Definition cv.hpp:5700
UNIMOD_Hex_2_HexNAc_1_Sulf_1_
Hex(2)HexNAc(1)Sulf(1): Hex(2) HexNAc Sulf.
Definition cv.hpp:12414
MS_peptide_descriptions
peptide descriptions: Descriptions of peptides.
Definition cv.hpp:4473
MS_analysis_software
analysis software: Analysis software.
Definition cv.hpp:4767
UNIMOD_dHex_3_Hex_4_HexNAc_4_
dHex(3)Hex(4)HexNAc(4): DHex(3) Hex(4) HexNAc(4).
Definition cv.hpp:13392
UNIMOD_AEC_MAEC
AEC-MAEC: Aminoethylcysteine.
Definition cv.hpp:10272
UNIMOD_Ser__Pro
Ser->Pro: Ser->Pro substitution.
Definition cv.hpp:10710
UNIMOD_Label_15N_2_2H_9_
Label:15N(2)2H(9): SILAC label.
Definition cv.hpp:11172
MS_mass_trace_reporting__polygons
mass trace reporting: polygons: The mass trace of the features of this feature list specifies polygon...
Definition cv.hpp:5895
UNIMOD_Hex_3_HexNAc_6_Sulf_1_
Hex(3)HexNAc(6)Sulf(1): Hex(3) HexNAc(6) Sulf.
Definition cv.hpp:12636
UNIMOD_Asn__Arg
Asn->Arg: Asn->Arg substitution.
Definition cv.hpp:11742
UNIMOD_Cation_Cu_I_
Cation:Cu[I]: Replacement of proton by copper.
Definition cv.hpp:10371
MS_ProteomeDiscoverer_Mass_Analyzer_OBSOLETE
ProteomeDiscoverer:Mass Analyzer: Type of mass spectrometer used (ITMS, FTMS, TOFMS,...
Definition cv.hpp:5232
UNIMOD_dHex_2_Hex_3_HexNAc_3_Sulf_1_
dHex(2)Hex(3)HexNAc(3)Sulf(1): Sulf dHex(2) Hex(3) HexNAc(3).
Definition cv.hpp:13704
MS_V8_E
V8-E: Cleavage agent V8-E.
Definition cv.hpp:4356
UO_league
league: A length unit which is equal to 3 miles, or 4,828.032 metres
Definition cv.hpp:14847
MS_ProteomeDiscoverer_1__Static_Terminal_Modification
ProteomeDiscoverer:1. Static Terminal Modification: Determine 1st static terminal post-translational ...
Definition cv.hpp:8016
UNIMOD_QAT
QAT: APTA-d0.
Definition cv.hpp:9750
MS_MetaMorpheus_protein_score
MetaMorpheus:protein score: MetaMorpheus score for protein groups.
Definition cv.hpp:8907
MS_transient_recorder
transient recorder: A detector acquisition mode used for detecting transient signals.
Definition cv.hpp:699
MS_LOWESS_smoothing
LOWESS smoothing: Reduces intensity spikes by applying a modelling method known as locally weighted p...
Definition cv.hpp:3021
MS_source_interface_manufacturer
source interface manufacturer: The source interface manufacturer.
Definition cv.hpp:6282
MS_mean_drift_time_array
mean drift time array: Array of drift times, averaged from a matrix of binned m/z and drift time valu...
Definition cv.hpp:7881
UNIMOD_Xlink_DFDNB
Xlink:DFDNB: Intact DFDNB crosslinker.
Definition cv.hpp:10977
MS_c_terminal_flanking_residue
c-terminal flanking residue: The residue following the last amino acid in the peptide sequence as it ...
Definition cv.hpp:3798
MS_TOF
TOF (time-of-flight): Instrument that separates ions by m/z in a field-free region after acceleration...
Definition cv.hpp:564
MS_AMS_OBSOLETE
AMS (accelerator mass spectrometry): A mass spectrometry technique in which atoms extracted from a sa...
Definition cv.hpp:1125
MS_mzidLib_InsertMetaDataFromFasta
mzidLib:InsertMetaDataFromFasta: A tool for adding additional meta data from a FASTA file to DBSequen...
Definition cv.hpp:7188
MS_decoy_DB_from_IPI_zebrafish_OBSOLETE
decoy DB from IPI_zebrafish: Decoy database from a International Protein Index database for Danio rer...
Definition cv.hpp:4290
MS_data_processing_start_time
data processing start time: The time that a data processing action was started.
Definition cv.hpp:7755
MS_Q_Exactive_Plus
Q Exactive Plus: Thermo Scientific Q Exactive Plus.
Definition cv.hpp:8358
MS_isolation_window_lower_offset
isolation window lower offset: The extent of the isolation window in m/z below the isolation window t...
Definition cv.hpp:3183
MS_DB_accession_filter_string
DB accession filter string: DB accession filter string.
Definition cv.hpp:4947
MS_Phenyx_MaxPepPvalue
Phenyx:MaxPepPvalue: The maximal peptide p-value for a peptide to be considered for a valid identific...
Definition cv.hpp:4563
MS_TOPP_SpectraFilterSqrtMower
TOPP SpectraFilterSqrtMower: Applies a filter to peak spectra after intensity scaling to the square r...
Definition cv.hpp:6879
MS_MassHunter_Qualitative_Analysis
MassHunter Qualitative Analysis: Software for data analysis of data from 6000 series instruments.
Definition cv.hpp:2709
MS_SEQUEST_deltacnstar
SEQUEST:deltacnstar: The SEQUEST result 'DeltaCnStar'.
Definition cv.hpp:7197
UNIMOD_UgiJoullieProGly
UgiJoullieProGly: Side reaction of PG with Side chain of aspartic or glutamic acid.
Definition cv.hpp:12072
UNIMOD_Carbamidomethyl
Carbamidomethyl: Iodoacetamide derivative.
Definition cv.hpp:9381
MS_SCiLS_Lab_format
SCiLS Lab format: SCiLS Lab file format.
Definition cv.hpp:7605
MS_unmodified_peptide_sequence
unmodified peptide sequence: A sequence of letter symbols denoting the order of amino acids that comp...
Definition cv.hpp:3366
MS_ETD
ETD (electron transfer dissociation): A process to fragment ions in a mass spectrometer by inducing f...
Definition cv.hpp:2451
MS_ProteinExtractor_UsePhenyx
ProteinExtractor:UsePhenyx: Flag indicating to include Phenyx scoring for calculation of the ProteinE...
Definition cv.hpp:4728
MS_constant_neutral_gain_spectrum
constant neutral gain spectrum: A spectrum formed of all product ions that have been produced by gain...
Definition cv.hpp:1539
UNIMOD_IBTP
IBTP: Thio Ether Formation - BTP Adduct.
Definition cv.hpp:9597
UO_relative_light_unit
relative light unit: A derived unit which is a measure of relative light intensity,...
Definition cv.hpp:14733
MS_Progenesis_peptide_raw_abundance
Progenesis:peptide raw abundance: The data type raw abundance for peptide produced by Progenesis LC-M...
Definition cv.hpp:6093
MS_Cleavage_agent_regular_expression
Cleavage agent regular expression: Regular expressions for cleavage enzymes.
Definition cv.hpp:3996
UO_colony_forming_unit_per_volume
colony forming unit per volume: A concentration unit which a measure of viable bacterial numbers in a...
Definition cv.hpp:14433
MS_ProteinScape_PFFSolverScore
ProteinScape:PFFSolverScore: The ProteinSolver score stored by ProteinScape.
Definition cv.hpp:4917
UNIMOD_bisANS_sulfonates
bisANS-sulfonates: BisANS with loss of both sulfonates.
Definition cv.hpp:12177
MS_m_z_array
m/z array: A data array of m/z values.
Definition cv.hpp:2148
MS_ion_attribute_OBSOLETE
ion attribute: Ion properties that are associated with a value.
Definition cv.hpp:2127
UNIMOD_Hex_3_HexNAc_7_Sulf_1_
Hex(3)HexNAc(7)Sulf(1): Hex(3) HexNAc(7) Sulf.
Definition cv.hpp:12759
UNIMOD_GEE
GEE: Transamidation of glycine ethyl ester to glutamine.
Definition cv.hpp:13419
MS_attenuation
attenuation: Describes the reduction of the intensity of the laser beam energy.
Definition cv.hpp:3240
UNIMOD_O_pinacolylmethylphosphonate
O-pinacolylmethylphosphonate: O-pinacolylmethylphosphonylation.
Definition cv.hpp:10848
UNIMOD_Hex_1_HexNAc_1_NeuGc_4_
Hex(1)HexNAc(1)NeuGc(4): Hex HexNAc NeuGc(4).
Definition cv.hpp:13239
MS_PTM_localization_confidence_metric
PTM localization confidence metric: Localization confidence metric for a post translational modificat...
Definition cv.hpp:8067
MS_Progenesis_MetaScope_score
Progenesis MetaScope score: The confidence score produced by Progenesis QI.
Definition cv.hpp:9090
MS_NH3_neutral_loss_OBSOLETE
NH3 neutral loss: Neutral loss of ammonia.
Definition cv.hpp:7818
MS_sequence_multiply_subsumable_protein
sequence multiply subsumable protein: A protein for which the matched peptide sequences are the same,...
Definition cv.hpp:8163
MS_assay_label_attribute
assay label attribute: Attribute describing an assay label.
Definition cv.hpp:6780
UO_yocto
yocto: A prefix in the metric system denoting a factor of 10 to the power of -24.
Definition cv.hpp:14715
MS_ProteoSuite
ProteoSuite: ProteoSuite software for the analysis of quantitative proteomics data.
Definition cv.hpp:6819
UNIMOD_Hex_9_HexNAc_1_
Hex(9)HexNAc(1): Hex(9) HexNAc.
Definition cv.hpp:13713
MS_coefficient_of_variation
coefficient of variation: Variation of a set of signal measurements calculated as the standard deviat...
Definition cv.hpp:6063
MS_MaxQuant_sequence_length
MaxQuant:sequence length: The data type sequence length produced by MaxQuant.
Definition cv.hpp:6114
MS_no_threshold
no threshold: In case no threshold was used.
Definition cv.hpp:4887
MS_negative_scan
negative scan: Polarity of the scan is negative.
Definition cv.hpp:735
UO_watt_per_steradian
watt per steradian: A radiant intensity unit which is equal to one kilogram meter squared per second ...
Definition cv.hpp:14283
UO_microliter
microliter: A volume unit which is equal to one millionth of a liter or 10^[-6] L.
Definition cv.hpp:14106
MS_mass_scan_OBSOLETE
mass scan: A variation of instrument where a selected mass is scanned.
Definition cv.hpp:585
MS_ratio_calculation_method
ratio calculation method: Method used to calculate the ratio.
Definition cv.hpp:6648
UO_rad
rad: An absorbed dose unit which is equal to 0.01 gray (Gy).
Definition cv.hpp:14205
MS_supplemental_beam_type_collision_induced_dissociation
supplemental beam-type collision-induced dissociation: A supplemental collision-induced dissociation ...
Definition cv.hpp:8493
MS_McLafferty_Rearrangement_OBSOLETE
McLafferty Rearrangement: A dissociation reaction triggered by transfer of a hydrogen atom via a 6-me...
Definition cv.hpp:1878
MS_chemi_ionization
chemi-ionization: The reaction of a neutral molecule with an internally excited molecule to form an i...
Definition cv.hpp:1731
UNIMOD_Asn__Ala
Asn->Ala: Asn->Ala substitution.
Definition cv.hpp:11718
MS_4000_QTRAP
4000 QTRAP: Applied Biosystems/MDS SCIEX Q 4000 TRAP MS.
Definition cv.hpp:783
UO_siemens
siemens: An electrical conduction unit which is equal to A/V.
Definition cv.hpp:14589
MS_Scaffold__Minimum_Peptide_Count
Scaffold: Minimum Peptide Count: Minimum number of peptides a protein must have to be accepted.
Definition cv.hpp:5124
UNIMOD_dHex_1_Hex_2_HexNAc_4_NeuAc_1_
dHex(1)Hex(2)HexNAc(4)NeuAc(1): DHex Hex(2) HexNAc(4) NeuAc.
Definition cv.hpp:13233
UNIMOD_Methyl_2H_3__Acetyl_2H_3_
Methyl:2H(3)+Acetyl:2H(3): 3-fold methylated lysine labelled with Acetyl_heavy.
Definition cv.hpp:12228
UNIMOD_Xle__Gly
Xle->Gly: Leu/Ile->Gly substitution.
Definition cv.hpp:11640
MS_mass_selective_instability_OBSOLETE
mass selective instability: A method for selective ejection of ions according to their m/z value in a...
Definition cv.hpp:1506
UNIMOD_Met__Thr
Met->Thr: Met->Thr substitution.
Definition cv.hpp:10587
UNIMOD_Hex_4_HexNAc_5_Sulf_1_
Hex(4)HexNAc(5)Sulf(1): Hex(4) HexNAc(5) Sulf.
Definition cv.hpp:12624
UNIMOD_dHex_1_Hex_3_HexNAc_2_
dHex(1)Hex(3)HexNAc(2): DHex Hex(3) HexNAc(2).
Definition cv.hpp:13326
MS_database_filtering
database filtering: Was there filtering used on the database.
Definition cv.hpp:3555
UNIMOD_Hydroxyfarnesyl
Hydroxyfarnesyl: Hydroxyfarnesyl.
Definition cv.hpp:10059
UNIMOD_Delta_H_6_C_7_O_4_
Delta:H(6)C(7)O(4): Methylglyoxal-derived tetrahydropyrimidine.
Definition cv.hpp:13629
MS_fragment_mass_type_mono
fragment mass type mono: Mass type setting for fragment mass was monoisotopic.
Definition cv.hpp:4194
UO_mass_volume_percentage
mass volume percentage: A dimensionless concentration unit which denotes the mass of the substance in...
Definition cv.hpp:14289
MS_spectrum_quality_descriptions
spectrum quality descriptions: Description of the quality of the input spectrum.
Definition cv.hpp:4479
UO_nanosievert
nanosievert: A dose equivalent unit which is equal to one thousandth of a millionth of a sievert or 1...
Definition cv.hpp:14232
UNIMOD_Gly__Pro
Gly->Pro: Gly->Pro substitution.
Definition cv.hpp:11583
UO_molar_volume_unit
molar volume unit: A unit which is a standard measure of the volume of a homogeneous substance contai...
Definition cv.hpp:13971
MS_PEAKS_inChorusProteinScore
PEAKS:inChorusProteinScore: The PEAKS inChorus protein score.
Definition cv.hpp:7797
UNIMOD_IGBP
IGBP: Light IDBEST tag for quantitation.
Definition cv.hpp:9795
MS_external_reference_data
external reference data: Data belonging to an external reference.
Definition cv.hpp:8943
MS_modification_probability
modification probability: The a priori probability of a modification.
Definition cv.hpp:6042
MS_laser_attribute
laser attribute: Laser properties that are associated with a value.
Definition cv.hpp:3219
MS_MIKES_OBSOLETE
MIKES (mass analyzed ion kinetic energy spectrometry): Spectra that are obtained from a sector mass s...
Definition cv.hpp:1302
MS_charge_state_calculation
charge state calculation: A process that infers the charge state of an MSn spectrum's precursor(s) by...
Definition cv.hpp:3006
MS_isolation_window_lower_limit_OBSOLETE
isolation window lower limit: The lowest m/z being isolated in an isolation window.
Definition cv.hpp:3069
UNIMOD_ICAT_H_13C_6_
ICAT-H:13C(6): N-iodoacetyl, p-chlorobenzyl-13C6-glucamine.
Definition cv.hpp:9609
MS_Phenyx_Turbo
Phenyx:Turbo: The turbo mode parameter in Phenyx.
Definition cv.hpp:4545
UNIMOD_Met__Cys
Met->Cys: Met->Cys substitution.
Definition cv.hpp:11682
UNIMOD_Gly__Asn
Gly->Asn: Gly->Asn substitution.
Definition cv.hpp:11580
UNIMOD_Tyr__Val
Tyr->Val: Tyr->Val substitution.
Definition cv.hpp:11991
UNIMOD_Phe__Asn
Phe->Asn: Phe->Asn substitution.
Definition cv.hpp:11547
MS_positive_ion_mode_OBSOLETE
positive ion mode: OBSOLETE.
Definition cv.hpp:528
MS_regular_expression_for_a_digital_object_identifier__DOI_
(?:[.][0-9]+)*‍/(?:(?!["&\'<>])[^ \t\r \v\f])+).
Definition cv.hpp:7890
MS_6340_Ion_Trap_LC_MS
6340 Ion Trap LC/MS: The 6340 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined w...
Definition cv.hpp:2025
MS_selected_ion_monitoring_chromatogram
selected ion monitoring chromatogram: Chromatogram created by creating an array of the measurements o...
Definition cv.hpp:4812
MS_TOPP_PrecursorIonSelector
TOPP PrecursorIonSelector: A tool for precursor ion selection based on identification results.
Definition cv.hpp:7032
MS_MS_GF
MS-GF: MS-GF software used to re-score the peptide-spectrum matches.
Definition cv.hpp:6588
MS_database_type
database type: Database containing amino acid or nucleic acid sequences.
Definition cv.hpp:3552
MS_PSM_level_p_value
PSM-level p-value: Estimation of the p-value for peptide spectrum matches.
Definition cv.hpp:7506
MS_particle_beam
particle beam: Method for generating ions from a solution of an analyte.
Definition cv.hpp:477
UNIMOD_Xle__Cys
Xle->Cys: Leu/Ile->Cys substitution.
Definition cv.hpp:11631
PEFF_DbUniqueId
DbUniqueId: Sequence Database unique identifier.
Definition cv.hpp:177
MS_ProteomeDiscoverer_Activation_Type_OBSOLETE
ProteomeDiscoverer:Activation Type: Fragmentation method used (CID, MPD, ECD, PQD,...
Definition cv.hpp:5226
MS_TOPP_CompNovoCID
TOPP CompNovoCID: Performs a peptide/protein identification with the CompNovo engine in collision-ind...
Definition cv.hpp:6984
MS_DTASelect
DTASelect: Analysis software designed to reassemble the SEQUEST peptide identifications and to highli...
Definition cv.hpp:8247
MS_ProteomeDiscoverer_Xtract_Monoisotopic_Mass_Only
ProteomeDiscoverer:Xtract:Monoisotopic Mass Only: Determines whether the isotopic pattern,...
Definition cv.hpp:5325
UNIMOD_Pro__Ser
Pro->Ser: Pro->Ser substitution.
Definition cv.hpp:10623
UNIMOD_benzylguanidine
benzylguanidine: Modification of the lysine side chain from NH2 to guanidine with a H removed in favo...
Definition cv.hpp:12201
MS_TOPP_SpectraFilterMarkerMower
TOPP SpectraFilterMarkerMower: Applies a filter to peak spectra for marked peaks.
Definition cv.hpp:6864
MS_OpenXQuest_wTIC
OpenXQuest:wTIC: OpenXQuest's weighted percent of total ion current subscore.
Definition cv.hpp:8517
UNIMOD_Ala__Met
Ala->Met: Ala->Met substitution.
Definition cv.hpp:11403
MS_TPP
TPP (Trans-Proteomic Pipeline): A suite of open source tools for the processing of MS2 proteomics dat...
Definition cv.hpp:7305
MS_Scaffold_nativeID_format
Scaffold nativeID format: Scaffold native ID format.
Definition cv.hpp:5085
MS_matrix_application_type
matrix application type: Describes the technique how the matrix is put on the sample target.
Definition cv.hpp:3195
MS_TopPIC_combined_spectrum_number
TopPIC:combined spectrum number: Number of combined spectra.
Definition cv.hpp:9195
MS_Mascot_use_MudPIT_scoring_OBSOLETE
Mascot:use MudPIT scoring: Determines whether to use MudPIT or normal scoring.
Definition cv.hpp:5415
MS_source_temperature
source temperature: The temperature of the source of a mass spectrometer.
Definition cv.hpp:6570
MS_6230B_Time_of_Flight_LC_MS
6230B Time-of-Flight LC/MS: The 6230B Time-of-Flight LC/MS is a Agilent liquid chromatography instrum...
Definition cv.hpp:8814
MS_Thermo_Finnigan_software
Thermo Finnigan software: Thermo Finnigan software for data acquisition and analysis.
Definition cv.hpp:2748
MS_TopPIC_error_tolerance
TopPIC:error tolerance: Error tolerance for precursor and fragment masses in PPM.
Definition cv.hpp:9168
UO_molar
molar: A unit of concentration which expresses a concentration of 1 mole of solute per liter of solut...
Definition cv.hpp:13989
UNIMOD_Delta_H_8_C_6_O_2_
Delta:H(8)C(6)O(2): Acrolein addition +112.
Definition cv.hpp:9780
MS_selection_window_attribute
selection window attribute: Selection window properties that are associated with a value.
Definition cv.hpp:2256
UNIMOD_Gly__Tyr
Gly->Tyr: Gly->Tyr substitution.
Definition cv.hpp:11592
UNIMOD_Xlink_DSSO_175_
Xlink:DSSO[175]: Ammonia-quenched monolink of DSSO crosslinker.
Definition cv.hpp:13512
MS_SRM_protein_level_quantitation
SRM protein level quantitation: Selected Reaction Monitoring protein level quantitation.
Definition cv.hpp:7296
MS_ProteomeDiscoverer_Maximum_Protein_References_Per_Peptide
ProteomeDiscoverer:Maximum Protein References Per Peptide: Maximum number of proteins that a single i...
Definition cv.hpp:5442
MS_Byonic_PEP
Byonic:PEP: Byonic posterior error probability.
Definition cv.hpp:7242
UNIMOD_Trp__Oxolactone
Trp->Oxolactone: Tryptophan oxidation to oxolactone.
Definition cv.hpp:9870
UNIMOD_glycidamide
glycidamide: Glycidamide adduct.
Definition cv.hpp:11316
MS_TOPP_OpenSwath_component
TOPP OpenSwath component: OpenSwath component of the TOPP software.
Definition cv.hpp:7038
MS_isolation_width_OBSOLETE
isolation width: The total width (i.e. not half for plus-or-minus) of the gate applied around a selec...
Definition cv.hpp:330
UNIMOD_Ser__Gln
Ser->Gln: Ser->Gln substitution.
Definition cv.hpp:11856
UNIMOD_Hydroxamic_acid
Hydroxamic_acid: Conversion of carboxylic acid to hydroxamic acid.
Definition cv.hpp:12270
UNIMOD_Pent_2_
Pent(2): Pent(2).
Definition cv.hpp:13632
UNIMOD_Ser__Met
Ser->Met: Ser->Met substitution.
Definition cv.hpp:11853
UNIMOD_Phosphoadenosine
Phosphoadenosine: AMP.
Definition cv.hpp:10131
PEFF_ModResPsi
ModResPsi: Modified residue with PSI-MOD identifier.
Definition cv.hpp:210
UO_cubic_centimeter
cubic centimeter: A volume unit which is equal to one millionth of a cubic meter or 10^[-9] m^[3],...
Definition cv.hpp:14094
MS_filter_string
filter string: A string unique to Thermo instrument describing instrument settings for the scan.
Definition cv.hpp:2142
MS_database_local_file_path_OBSOLETE
database local file path: OBSOLETE: Use attribute in mzIdentML instead. Local file path of the search...
Definition cv.hpp:3540
UO_katal_per_cubic_meter
katal per cubic meter: A catalytic (activity) concentration unit which is equal to 1 katal activity o...
Definition cv.hpp:14406
MS_jet_separator
jet separator: A device that separates carrier gas from gaseous analyte molecules on the basis of dif...
Definition cv.hpp:462
MS_mass_resolving_power
mass resolving power: The observed mass divided by the difference between two masses that can be sepa...
Definition cv.hpp:3087
MS_desorption_ionization_on_silicon
desorption/ionization on silicon: The formation of ions by laser desorption ionization of a sample de...
Definition cv.hpp:1734
UO_base_pair
base pair: A count unit which contains one nucleotide.
Definition cv.hpp:14529
UNIMOD_Nethylmaleimide_water
Nethylmaleimide+water: Nethylmaleimidehydrolysis.
Definition cv.hpp:9945
MS_ProteomeDiscoverer_3__Static_Modification_OBSOLETE
ProteomeDiscoverer:3. Static Modification: ProteomeDiscoverer's 3rd static post-translational modific...
Definition cv.hpp:7440
UNIMOD_dHex_4_Hex_1_HexNAc_1_Kdn_2_
dHex(4)Hex(1)HexNAc(1)Kdn(2): DHex(4) Hex HexNAc Kdn(2).
Definition cv.hpp:13173
MS_FAIMS_compensation_voltage
FAIMS compensation voltage: The DC potential applied to the asymmetric waveform in FAIMS that compens...
Definition cv.hpp:5142
MS_mz5_format
mz5 format: mz5 file format, modelled after mzML.
Definition cv.hpp:6057
UO_frequency_unit
frequency unit: A unit which is a standard measure of the number of repetitive actions in a particula...
Definition cv.hpp:14118
MS_ProteomeDiscoverer_Relaxed_Score_Threshold
ProteomeDiscoverer:Relaxed Score Threshold: Specifies the threshold value for relaxed scoring.
Definition cv.hpp:7581
MS_protein_group_level_result_list_statistic
protein group-level result list statistic: Attrbiute of an entire list of protein groups.
Definition cv.hpp:8574
MS_ProteomeDiscoverer_Fragment_Mass_Tolerance_OBSOLETE
ProteomeDiscoverer:Fragment Mass Tolerance: Mass tolerance used for matching fragment peaks in Da or ...
Definition cv.hpp:5379
UNIMOD_Delta_H__4_O_2_
Delta:H(-4)O(2): Tryptophan oxidation to beta-unsaturated-2,4-bis-tryptophandione.
Definition cv.hpp:13611
MS_ProteomeDiscoverer_Mascot_Error_tolerant_Search
ProteomeDiscoverer:Mascot:Error tolerant Search: Determines whether to search error-tolerant.
Definition cv.hpp:5355
UNIMOD_Hex_4_
Hex(4): Hex(4).
Definition cv.hpp:12429
UNIMOD_Saligenin
Saligenin: O-toluene.
Definition cv.hpp:12015
UNIMOD_Glu__Ser
Glu->Ser: Glu->Ser substitution.
Definition cv.hpp:11514
MS_DB_filter_taxonomy
DB filter taxonomy: A taxonomy filter was to the database search.
Definition cv.hpp:3558
MS_cone_voltage
cone voltage: Potential difference between the sampling cone/orifice in volts.
Definition cv.hpp:3330
MS_ProteinPilot_Software
ProteinPilot Software: SCIEX or Applied Biosystems|MDS SCIEX software for protein ID and quant.
Definition cv.hpp:2658
MS_experiment_name
experiment name: The name for identifying an experiment.
Definition cv.hpp:6807
UNIMOD_Xlink_EGS_226_
Xlink:EGS[226]: Intact EGS cross-linker.
Definition cv.hpp:13545
MS_Mascot_input_parameter
Mascot input parameter: Search engine input parameters specific to Mascot.
Definition cv.hpp:6735
UNIMOD_Biotin_Thermo_33033
Biotin:Thermo-33033: Sulfo-SBED Label Photoreactive Biotin Crosslinker.
Definition cv.hpp:12006
MS_APCI
APCI (atmospheric pressure chemical ionization): Chemical ionization that takes place at atmospheric ...
Definition cv.hpp:492
MS_ICAT_light_reagent
ICAT light reagent: The name of the sample labelled with the light ICAT label.
Definition cv.hpp:8268
UNIMOD_dHex_1_Hex_4_HexNAc_3_NeuAc_1_
dHex(1)Hex(4)HexNAc(3)NeuAc(1): DHex Hex(4) HexNAc(3) NeuAc —OR— dHex(2) Hex(3) HexNAc(3) NeuGc.
Definition cv.hpp:12588
MS_electron_ionization
electron ionization: The ionization of an atom or molecule by electrons that are typically accelerate...
Definition cv.hpp:1740
MS_SEQUEST_sort_by_z
SEQUEST:sort by z: Sort order of SEQUEST search results given by the charge.
Definition cv.hpp:3741
MS_proteoform_level_identification_statistic
proteoform-level identification statistic: Identification confidence metric for a proteoform.
Definition cv.hpp:9138
MS_MD_Score
MD-Score: MD-Score for PTM site location at the PSM-level.
Definition cv.hpp:8064
MS_protein_value__median_of_peptide_ratios
protein value: median of peptide ratios: Protein quantification value calculated as median of peptide...
Definition cv.hpp:6651
MS_AP_MALDI
AP MALDI (atmospheric pressure matrix-assisted laser desorption ionization): Matrix-assisted laser de...
Definition cv.hpp:1131
MS_frag__TMT_reporter_ion
frag: TMT reporter ion: Standard reporter ion for TMT. The value slot holds the integer mass of the T...
Definition cv.hpp:8469
UNIMOD_DEDGFLYMVYASQETFG
DEDGFLYMVYASQETFG: Addition of DEDGFLYMVYASQETFG.
Definition cv.hpp:11310
MS_precursor_neutral_loss
precursor neutral loss: This term can describe a neutral loss m/z value that is lost from an ion.
Definition cv.hpp:4980
UO_thou
thou: A length unit which is equal to 0.0254 millimetres.
Definition cv.hpp:14829
MS_mzQuantML_format
mzQuantML format: The mzQuantML format for quantification data from the PSI. File extension '....
Definition cv.hpp:6675
MS_ProteomeDiscoverer_Maximum_Missed_Cleavage_Sites
ProteomeDiscoverer:Maximum Missed Cleavage Sites: Maximum number of missed cleavage sites to consider...
Definition cv.hpp:5385
UO_zepto
zepto: A prefix in the metric system denoting a factor of 10 to the power of -21.
Definition cv.hpp:14712
UNIMOD_GPIanchor
GPIanchor: Glycosylphosphatidylinositol.
Definition cv.hpp:10104
MS_ProteinExtractor_Weighting
ProteinExtractor:Weighting: Weighting factor for protein list compilation by ProteinExtractor.
Definition cv.hpp:6312
MS_co_author
co-author: One of a set of authors associated with a publication or release.
Definition cv.hpp:6552
MS_DB_MW_filter_minimum
DB MW filter minimum: Minimum value of molecular weight filter.
Definition cv.hpp:4041
UNIMOD_dHex_1_Hex_4_HexNAc_4_NeuAc_1_Sulf_1_
dHex(1)Hex(4)HexNAc(4)NeuAc(1)Sulf(1): DHex Hex(4) HexNAc(4) NeuAc Sulf.
Definition cv.hpp:12753
MS_mass_table_source
mass table source: Children of this term specify the source of the mass table used.
Definition cv.hpp:4443
MS_MS_MS_OBSOLETE
MS/MS (mass spectrometry/mass spectrometry): The acquisition, study and spectra of the electrically c...
Definition cv.hpp:1314
UNIMOD_Hex_3_HexNAc_3_NeuGc_1_Sulf_1_
Hex(3)HexNAc(3)NeuGc(1)Sulf(1): Hex(3) HexNAc(3) NeuGc Sulf.
Definition cv.hpp:13191
MS_product_ion_spectrum
product ion spectrum (MSn spectrum): MSn refers to multi-stage MS2 experiments designed to record pro...
Definition cv.hpp:2373
MS_MRMaid_peptide_score
MRMaid:peptide score: Score in MRMaid to indicate the expected performance of the peptide in SRM.
Definition cv.hpp:7110
UNIMOD_Phe__Arg
Phe->Arg: Phe->Arg substitution.
Definition cv.hpp:11556
UNIMOD_AEC_MAEC_2H_4_
AEC-MAEC:2H(4): Deuterium cysteamine modification to S or T.
Definition cv.hpp:10950
MS_predicted_isoelectric_point
predicted isoelectric point: The pH of a solution at which a charged molecule would not migrate in an...
Definition cv.hpp:3288
UNIMOD_Arg
Arg: Addition of arginine due to transpeptidation.
Definition cv.hpp:12084
MS_MS_GF_
MS-GF+: MS-GF+ software used to analyze the spectra.
Definition cv.hpp:6591
MS_customization
customization: Free text description of a single customization made to the instrument; for several mo...
Definition cv.hpp:360
UNIMOD_GIST_Quat_2H_9_
GIST-Quat:2H(9): Quaternary amine labeling reagent heavy form (+9amu), N-term & K.
Definition cv.hpp:9528
UO_milligram_per_liter
milligram per liter: A mass unit density which is equal to mass of an object in milligrams divided by...
Definition cv.hpp:14616
MS_ProteomeDiscoverer_Spectrum_Selector_Minimum_Peak_Count
ProteomeDiscoverer:Spectrum Selector:Minimum Peak Count: Minimum number of peaks in a tandem mass spe...
Definition cv.hpp:5241
UNIMOD_CresylSaligeninPhosphate
CresylSaligeninPhosphate: Cresyl-Saligenin-phosphorylation.
Definition cv.hpp:12021
MS_inclusive_low_intensity_threshold
inclusive low intensity threshold: Threshold at or below which some action is taken.
Definition cv.hpp:3048
PEFF_Individual_Sequence_Entries_Section_term
Individual Sequence Entries Section term: CV term that may appear in a PEFF Individual Entry Section.
Definition cv.hpp:126
UNIMOD_Propionyl_13C_3_
Propionyl:13C(3): Propionate labeling reagent heavy form (+3amu), N-term & K.
Definition cv.hpp:9516
MS_nanospray
nanospray (nanoelectrospray): Electrospray ionization at a flow rate less than ~25 nL/min....
Definition cv.hpp:1767
MS_SILAC_medium_reagent
SILAC medium reagent: The name of the sample labelled with the medium SILAC label.
Definition cv.hpp:8292
UNIMOD_CarboxymethylDTT
CarboxymethylDTT: Carboxymethylated DTT modification of cysteine.
Definition cv.hpp:11067
UNIMOD_Hex_4_HexA_1_HexNAc_1_
Hex(4)HexA(1)HexNAc(1): Hex(4) HexA HexNAc.
Definition cv.hpp:13677
UNIMOD_Hex_7_HexNAc_3_
Hex(7)HexNAc(3): Hex(7) HexNAc(3).
Definition cv.hpp:12627
UNIMOD_Label_15N_3_
Label:15N(3): 15N(3).
Definition cv.hpp:11274
UNIMOD_MercaptoEthanol
MercaptoEthanol: 2-OH-ethyl thio-Ser.
Definition cv.hpp:11130
MS_Comet_expectation_value
Comet:expectation value: The Comet result 'Expectation value'.
Definition cv.hpp:7218
MS_PIA_protein_inference_used_PSMs
PIA:protein inference used PSMs: The method to determine the PSMs used for scoring by the protein inf...
Definition cv.hpp:7647
UNIMOD_dHex_1_Hex_1_
dHex(1)Hex(1): Hex1dHex1.
Definition cv.hpp:12225
UO_pH
pH: A dimensionless concentration notation which denotes the acidity of a solution in terms of activi...
Definition cv.hpp:14385
UNIMOD_dHex_1_Hex_2_HexNAc_4_Sulf_2_
dHex(1)Hex(2)HexNAc(4)Sulf(2): DHex Hex(2) HexNAc(4) Sulf(2).
Definition cv.hpp:13698
UNIMOD_dHex_1_Hex_2_HexNAc_3_NeuAc_1_
dHex(1)Hex(2)HexNAc(3)NeuAc(1): DHex Hex(2) HexNAc(3) NeuAc.
Definition cv.hpp:13122
MS_SSRCalc
SSRCalc: Sequence Specific Retention Calculator estimates the retention time of peptides based on the...
Definition cv.hpp:3324
UNIMOD_Hex_5_HexNAc_1_
Hex(5)HexNAc(1): Hex(5) HexNAc.
Definition cv.hpp:12945
UNIMOD_Glu__Pro
Glu->Pro: Glu->Pro substitution.
Definition cv.hpp:11508
MS_Savitzky_Golay_smoothing
Savitzky-Golay smoothing: Reduces intensity spikes by applying local polynomial regression (of degree...
Definition cv.hpp:3018
MS_m_z
m/z: Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an ion ...
Definition cv.hpp:384
MS_MRMPilot_Software
MRMPilot Software: Applied Biosystems|MDS SCIEX software for MRM assay development.
Definition cv.hpp:2667
MS______HKR_P____P_
(?<=[HKR]P)(?!P): Regular expression for proline endopeptidase.
Definition cv.hpp:6297
UNIMOD_TAMRA_FP
TAMRA-FP: TAMRA fluorophosphonate modification of serine.
Definition cv.hpp:11373
MS_PSI_mzData_format
PSI mzData format: Proteomics Standards Inititative mzData file format.
Definition cv.hpp:2301
MS_mass_analyzer_attribute
mass analyzer attribute: Analyzer properties that are associated with a value.
Definition cv.hpp:2040
MS_MGF_scans_OBSOLETE
MGF scans: OBSOLETE: replaced by MS:1000797 (peak list scans): This term can hold the scans attribute...
Definition cv.hpp:4641
MS_overlayer_MALDI_sample_preparation
overlayer MALDI sample preparation: Overlayer method combining features of the crushed-crystal method...
Definition cv.hpp:6399
MS_charge_exchange_ionization
charge exchange ionization: The interaction of an ion with an atom or molecule in which the charge on...
Definition cv.hpp:1728
MS_multiple_peak_list_nativeID_format
multiple peak list nativeID format: Native format defined by index=xsd:nonNegativeInteger.
Definition cv.hpp:2994
UNIMOD_3sulfo
3sulfo: Derivatization by N-term modification using 3-Sulfobenzoic succinimidyl ester.
Definition cv.hpp:10902
MS_ProteomeDiscoverer_SEQUEST_FT_Medium_Confidence_XCorr_Charge2
ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge2: FT medium confidence XCorr parameter f...
Definition cv.hpp:5565
MS_SRM_transition_type
SRM transition type: The type of the transitions, e.g. target or decoy.
Definition cv.hpp:6450
MS_Byonic_Best_LogProb
Byonic:Best LogProb: Best (most negative) log p-value of an individual PSM.
Definition cv.hpp:7251
UNIMOD_Phe__Met
Phe->Met: Phe->Met substitution.
Definition cv.hpp:11544
MS_PSM_level_e_value
PSM-level e-value: Estimation of the e-value for peptide spectrum matches.
Definition cv.hpp:7509
UO_surface_tension_unit
surface tension unit: A unit which is a standard measure of the ability of a liguid to attraction of ...
Definition cv.hpp:14556
MS_peptide_shared_in_multiple_proteins
peptide shared in multiple proteins: A peptide matching multiple proteins.
Definition cv.hpp:3984
MS_polarity_OBSOLETE
polarity: Terms to describe the polarity setting of the instrument.
Definition cv.hpp:375
MS_preset_scan_configuration
preset scan configuration: A user-defined scan configuration that specifies the instrumental settings...
Definition cv.hpp:2511
UNIMOD_iTRAQ4plex
iTRAQ4plex: Representative mass and accurate mass for 116 & 117.
Definition cv.hpp:9792
UO_meter
meter: A length unit which is equal to the length of the path traveled by light in vacuum during a ti...
Definition cv.hpp:13827
UNIMOD_betaFNA
betaFNA: Beta-Funaltrexamine.
Definition cv.hpp:13464
UO_kilometer_per_hour
kilometer per hour: A speed/velocity unit which is equal to the speed of an object traveling 1 kilome...
Definition cv.hpp:14817
UNIMOD_dHex_1_Hex_3_HexNAc_2_Sulf_1_
dHex(1)Hex(3)HexNAc(2)Sulf(1): DHex Hex(3) HexNAc(2) Sulf.
Definition cv.hpp:13335
UNIMOD_Hex_1_HexNAc_1_dHex_1_Me_2_
Hex(1)HexNAc(1)dHex(1)Me(2): Hex HexNAc dHex Me(2).
Definition cv.hpp:12396
MS_MS_MS_in_Space_OBSOLETE
MS/MS in Space: A tandem mass spectrometry method in which product ion spectra are recorded in m/z an...
Definition cv.hpp:1575
MS_resonance_ion_ejection_OBSOLETE
resonance ion ejection: A mode of ion ejection in a quadrupole ion trap that relies on a auxiliary ra...
Definition cv.hpp:1515
UNIMOD_BHTOH
BHTOH: Michael addition of t-butyl hydroxylated BHT (BHTOH) to C, H or K.
Definition cv.hpp:10302
MS_TOPP_ConsensusMapNormalizer
TOPP ConsensusMapNormalizer: Normalizes maps of one consensus XML file (after linking).
Definition cv.hpp:6963
MS_database_original_uri
database original uri: URI, from where the search database was originally downloaded.
Definition cv.hpp:3543
UNIMOD_DAET
DAET: Phosphorylation to amine thiol.
Definition cv.hpp:9726
MS_Isotopomeric_ion_OBSOLETE
Isotopomeric ion: Isomeric ion having the same numbers of each isotopic atom but differing in their p...
Definition cv.hpp:1674
MS_minimum_number_of_enzymatic_termini
minimum number of enzymatic termini: Minimum number of enzymatic termini a peptide must have to be ac...
Definition cv.hpp:5133
MS_PubMed_identifier
PubMed identifier: A unique identifier for a publication in the PubMed database (MIR:00000015).
Definition cv.hpp:3339
UO_hecto
hecto: A prefix in the metric system denoting a factor of one hundred.
Definition cv.hpp:14658
MS_fragment_ion_intensity
fragment ion intensity (product ion intensity): The intensity of a single product ion.
Definition cv.hpp:4110
UNIMOD_Label_15N_2_
Label:15N(2): 15N(2).
Definition cv.hpp:11271
UNIMOD_Hex_3_HexNAc_1_Me_1_
Hex(3)HexNAc(1)Me(1): Hex(3) HexNAc Me.
Definition cv.hpp:12795
UNIMOD_Hex_2_HexNAc_3_NeuGc_3_
Hex(2)HexNAc(3)NeuGc(3): Hex(2) HexNAc(3) NeuGc(3).
Definition cv.hpp:13299
MS_microchannel_plate_detector
microchannel plate detector: A thin plate that contains a closely spaced array of channels that each ...
Definition cv.hpp:669
MS_SEQUEST_Fast
SEQUEST:Fast:
Definition cv.hpp:3837
MS_mass_to_charge_ratio
mass-to-charge ratio (m/z): Three-character symbol m/z is used to denote the quantity formed by divid...
Definition cv.hpp:387
UNIMOD_Asp__Lys
Asp->Lys: Asp->Lys substitution.
Definition cv.hpp:11466
UO_luminous_intensity_unit
luminous intensity unit: A unit which is a standard measure of the wavelength-weighted power emitted ...
Definition cv.hpp:13824
MS_SEQUEST_ViewCV
SEQUEST:ViewCV: SEQUEST View Input Parameters.
Definition cv.hpp:3519
MS_glow_discharge_ionization
glow discharge ionization: The formation of ions in the gas phase and from solid samples at the catho...
Definition cv.hpp:1248
MS_product_ion_m_z_error
product ion m/z error: The product ion m/z error.
Definition cv.hpp:4113
MS_API
API (atmospheric pressure ionization): Any ionization process in which ions are formed in the gas pha...
Definition cv.hpp:1137
UO_picogram
picogram: A mass unit which is equal to 10^[-12] g.
Definition cv.hpp:13878
MS_frag__b_ion___H2O
frag: b ion - H2O: Fragmentation information, type of product: b ion without water.
Definition cv.hpp:4092
MS_TopPIC_use_TopFD_feature
TopPIC:use TopFD feature: Proteoform identification using TopFD feature file.
Definition cv.hpp:9204
UNIMOD_dHex_1_Hex_8_HexNAc_2_
dHex(1)Hex(8)HexNAc(2): DHex Hex(8) HexNAc(2).
Definition cv.hpp:13731
UNIMOD_DTT
DTT: DTT adduct of cysteine.
Definition cv.hpp:13494
UO_fathom
fathom: A maritime length unit which is equal to 6.08 feet, or 1.853184 metres
Definition cv.hpp:14853
UNIMOD_Hex_5_
Hex(5): Hex(5).
Definition cv.hpp:12846
MS_mass_selective_axial_ejection_OBSOLETE
mass selective axial ejection: The use of mass selective instability to eject ions of selected m/z va...
Definition cv.hpp:1503
UNIMOD_Cys__Gln
Cys->Gln: Cys->Gln substitution.
Definition cv.hpp:11448
MS_chromatograph_file_format
chromatograph file format: The format of the chromatography file being used. This could be a instrume...
Definition cv.hpp:7776
MS_native_spectrum_identifier_format__combined_spectra
native spectrum identifier format, combined spectra: Describes how the native spectrum identifiers th...
Definition cv.hpp:8394
MS_SpectrumMill_Discriminant_Score
SpectrumMill:Discriminant Score: Discriminant score from Agilent SpectrumMill software.
Definition cv.hpp:5139
UNIMOD_Hex_5_HexNAc_4_NeuAc_2_
Hex(5)HexNAc(4)NeuAc(2): Hex(5) HexNAc(4) NeuAc(2).
Definition cv.hpp:12327
MS_SHA_1
SHA-1: SHA-1 (Secure Hash Algorithm-1) is a cryptographic hash function designed by the National Secu...
Definition cv.hpp:2316
MS_esquire_4000
esquire 4000: Bruker Daltonics' esquire 4000: linear ion trap, ESI, MALDI, Nanospray,...
Definition cv.hpp:834
UNIMOD_Menadione_HQ
Menadione-HQ: Menadione hydroquinone derivative.
Definition cv.hpp:10926
MS_denominator_data_type_attribute
denominator data type attribute: Attribute describing the data type of the denominator of a ratio.
Definition cv.hpp:6903
UNIMOD_Unknown_177
Unknown:177: Unidentified modification of 176.7462 found in open search.
Definition cv.hpp:13755
MS_zlib_compression
zlib compression: Zlib.
Definition cv.hpp:2331
UNIMOD_dHex_1_Hex_4_HexNAc_5_
dHex(1)Hex(4)HexNAc(5): DHex Hex(4) HexNAc(5).
Definition cv.hpp:12642
MS_conversion_dynode_photomultiplier
conversion dynode photomultiplier: A detector in which ions strike a conversion dynode to produce ele...
Definition cv.hpp:648
UNIMOD_HexNAc_1_dHex_2_
HexNAc(1)dHex(2): HexNAc1dHex2.
Definition cv.hpp:9660
MS_Compound_Discoverer
Compound Discoverer: Metabolomics analysis software from Thermo Fisher Scientific.
Definition cv.hpp:9063
MS_frag__z_ion___NH3
frag: z ion - NH3: Fragmentation information, type of product: z ion without ammonia.
Definition cv.hpp:4959
UNIMOD_Brij58
Brij58: Brij 58 synthetic polymer terminus.
Definition cv.hpp:13461
UNIMOD_dHex_1_Hex_2_HexNAc_3_
dHex(1)Hex(2)HexNAc(3): DHex Hex(2) HexNAc(3).
Definition cv.hpp:13329
UNIMOD_Biotin_tyramide
Biotin-tyramide: Biotin-Phenol.
Definition cv.hpp:13437
MS_frag__z_2_ion
frag: z+2 ion: Fragmentation information, type of product: z+2 ion.
Definition cv.hpp:4512
MS_OpenXQuest
OpenXQuest: Cross-Linking MS search engine.
Definition cv.hpp:8478
UNIMOD_NEMsulfurWater
NEMsulfurWater: N-ethylmaleimideSulfurWater.
Definition cv.hpp:12174
MS_atmospheric_pressure_photoionization
atmospheric pressure photoionization: Atmospheric pressure chemical ionization in which the reactant ...
Definition cv.hpp:1719
UNIMOD_Hex_3_HexNAc_7_
Hex(3)HexNAc(7): Hex(3) HexNAc(7).
Definition cv.hpp:12705
MS_vacuum_drying_MALDI_sample_preparation
vacuum drying MALDI sample preparation: Vacuum-drying MALDI sample preparation crystallization method...
Definition cv.hpp:6390
MS_SCIEX_software
SCIEX software: SCIEX or Applied Biosystems software for data acquisition and analysis.
Definition cv.hpp:2739
MS_single_peak_list_nativeID_format
single peak list nativeID format: Native format defined by file=xsd:IDREF.
Definition cv.hpp:2997
MS_Maltcms
Maltcms: Modular Application Toolkit for Chromatography Mass-Spectrometry is an application framework...
Definition cv.hpp:7482
UNIMOD_BMP_piperidinol
BMP-piperidinol: 1-methyl-3-benzoyl-4-hydroxy-4-phenylpiperidine.
Definition cv.hpp:12069
UNIMOD_Tyr__Pro
Tyr->Pro: Tyr->Pro substitution.
Definition cv.hpp:11979
UNIMOD_dHex_1_Hex_1_HexNAc_2_Sulf_1_
dHex(1)Hex(1)HexNAc(2)Sulf(1): DHex Hex HexNAc(2) Sulf.
Definition cv.hpp:12837
UNIMOD_NO_SMX_SEMD
NO_SMX_SEMD: Nitroso Sulfamethoxazole Sulphenamide thiol adduct.
Definition cv.hpp:10890
UNIMOD_Fluoro
Fluoro: Fluorination.
Definition cv.hpp:9615
MS_ProteomeDiscoverer_Protein_Relevance_Threshold
ProteomeDiscoverer:Protein Relevance Threshold: Specifies a peptide threshold that determines whether...
Definition cv.hpp:5457
UNIMOD_Ala__Glu
Ala->Glu: Ala->Glu substitution.
Definition cv.hpp:10413
MS_source_interface
source interface: The source interface.
Definition cv.hpp:6213
MS_emission_spectrum
emission spectrum: A plot of the relative intensity of electromagnetic radiation emitted by atoms or ...
Definition cv.hpp:3111
UO_gram_per_deciliter
gram per deciliter: A mass density unit which is equal to mass of an object in grams divided by the v...
Definition cv.hpp:14421
UNIMOD_dHex_1_Hex_5_HexNAc_3_NeuGc_1_
dHex(1)Hex(5)HexNAc(3)NeuGc(1): DHex Hex(5) HexNAc(3) NeuGc —OR— Hex(6) HexNAc(3) NeuAc.
Definition cv.hpp:12687
UNIMOD_Phycocyanobilin
Phycocyanobilin: Phycocyanobilin.
Definition cv.hpp:10083
MS_ProteinProspector_score
ProteinProspector:score: The ProteinProspector result 'Score'.
Definition cv.hpp:6579
MS_PyMS
PyMS (pyrolysis mass spectrometry): A mass spectrometry technique in which the sample is heated to th...
Definition cv.hpp:1344
UNIMOD_Phosphogluconoylation
Phosphogluconoylation: Phosphogluconoylation.
Definition cv.hpp:12192
UNIMOD_dHex_4_Hex_2_HexNAc_2_Kdn_1_
dHex(4)Hex(2)HexNAc(2)Kdn(1): DHex(4) Hex(2) HexNAc(2) Kdn.
Definition cv.hpp:13230
UNIMOD_Ahx2_Hsl
Ahx2+Hsl: C-terminal homoserine lactone and two aminohexanoic acids.
Definition cv.hpp:11319
MS_spectrum_attribute
spectrum attribute: Spectrum properties that are associated with a value.
Definition cv.hpp:2103
UNIMOD_ICAT_D
ICAT-D: Applied Biosystems original ICAT(TM) d0.
Definition cv.hpp:9408
MS_ProteomeDiscoverer_Static_Modification_for_X
ProteomeDiscoverer:Static Modification for X: Static Modification for X.
Definition cv.hpp:5586
MS_sustained_off_resonance_irradiation
sustained off-resonance irradiation: A technique associated with Fourier transform ion cyclotron reso...
Definition cv.hpp:1389
MS_frag__a_ion___NH3
frag: a ion - NH3: Ion a-NH3 fragmentation information, type of product: a ion without ammonia.
Definition cv.hpp:4137
MS_MS1_feature_maximum_intensity
MS1 feature maximum intensity: Maximum intensity of MS1 feature.
Definition cv.hpp:5943
UNIMOD_UgiJoullie
UgiJoullie: Side reaction of HisTag.
Definition cv.hpp:12057
UNIMOD_Ethanolyl
Ethanolyl: Ethanolation.
Definition cv.hpp:9852
UNIMOD_Ala__Tyr
Ala->Tyr: Ala->Tyr substitution.
Definition cv.hpp:11418
UO_mass_unit
mass unit: A unit which is a standard measure of the amount of matter/energy of a physical object.
Definition cv.hpp:13809
MS_Reprocessed_complete_dataset
Reprocessed complete dataset: All the raw files included in the original dataset (or group of origina...
Definition cv.hpp:9006
MS_KERD_OBSOLETE
KERD (kinetic energy release distribution): Distribution of values of translational kinetic energy re...
Definition cv.hpp:1287
MS_TSQ_Quantum_Ultra
TSQ Quantum Ultra: Thermo Scientific TSQ Quantum Ultra.
Definition cv.hpp:2922
UNIMOD_Hex_5_HexNAc_3_Pent_1_
Hex(5)HexNAc(3)Pent(1): Hex(5) HexNAc(3) Pent.
Definition cv.hpp:12531
MS_ProfileAnalysis
ProfileAnalysis: Bruker software for data analysis.
Definition cv.hpp:2853
MS_iTRAQ_reagent_115
iTRAQ reagent 115: The name of the sample labelled with the iTRAQ reagent 115.
Definition cv.hpp:8328
MS_LD_OBSOLETE
LD (Laser Desorption): The formation of ions through the interaction of a laser with a material or wi...
Definition cv.hpp:1296
UNIMOD_Met__Gln
Met->Gln: Met->Gln substitution.
Definition cv.hpp:11706
MS_Paragon__quantitation
Paragon: quantitation: The Paragon method setting that controls whether quantitation analysis is cond...
Definition cv.hpp:7734
MS_sample_preparation
sample preparation: Properties of the preparation steps which took place before the measurement was p...
Definition cv.hpp:3189
UNIMOD_QTGG
QTGG: SUMOylation leaving GlnThrGlyGly.
Definition cv.hpp:12099
MS_Compass_for_HCT_esquire
Compass for HCT/esquire: Bruker Compass for HCT/esquire software.
Definition cv.hpp:2808
UNIMOD_PhosphoHex_2_
PhosphoHex(2): H1O3P1Hex2.
Definition cv.hpp:12342
MS_ProteomeDiscoverer_SEQUEST_Use_Average_Fragment_Masses
ProteomeDiscoverer:SEQUEST:Use Average Fragment Masses: Use average masses for the fragments.
Definition cv.hpp:5463
UNIMOD_Pro__Ala
Pro->Ala: Pro->Ala substitution.
Definition cv.hpp:10626
UO_micromole_per_litre
micromole per litre: A specific concentration unit which is equal to 1 micromole in a given volume of...
Definition cv.hpp:14802
UNIMOD_Tyr__Lys
Tyr->Lys: Tyr->Lys substitution.
Definition cv.hpp:11973
UNIMOD_Hex_2_HexNAc_1_NeuGc_1_
Hex(2)HexNAc(1)NeuGc(1): Hex(2) HexNAc NeuGc.
Definition cv.hpp:12861
MS_completion_time
completion time: The time that a data processing action was finished.
Definition cv.hpp:2910
MS_pulse_energy
pulse energy: Describes output energy of the laser system. May be attenuated by filters or other mean...
Definition cv.hpp:3234
MS_wavelength_OBSOLETE
wavelength: The distance between two peaks of the emitted laser beam.
Definition cv.hpp:3225
UNIMOD_Hex_5_HexNAc_4_Me_2_Pent_1_
Hex(5)HexNAc(4)Me(2)Pent(1): Hex(5) HexNAc(4) Me(2) Pent.
Definition cv.hpp:12633
UNIMOD_Cys__Phe
Cys->Phe: Cys->Phe substitution.
Definition cv.hpp:10419
MS_TOPP_OpenSwathDecoyGenerator
TOPP OpenSwathDecoyGenerator: Generates decoys according to different models for a specific TraML.
Definition cv.hpp:7047
UNIMOD_dHex_2_Hex_2_HexNAc_2_Sulf_1_
dHex(2)Hex(2)HexNAc(2)Sulf(1): DHex(2) Hex(2) HexNAc(2) Sulf.
Definition cv.hpp:12990
MS_chromatography_separation
chromatography separation: A technique by which molecules are separated by chemical and physical prop...
Definition cv.hpp:7257
MS_API_4000
API 4000: Applied Biosystems/MDS SCIEX API 4000 MS.
Definition cv.hpp:807
MS_MRM_transition_type
MRM transition type (SRM transition type): The type of the transitions, e.g. target or decoy.
Definition cv.hpp:6453
MS_retention_time_alignment
retention time alignment: The correction of the spectrum scan times, as used e.g. in label-free prote...
Definition cv.hpp:2904
MS_Pro_ICAT
Pro ICAT: Applied Biosystems|MDS SCIEX software for protein ID and quant by ICAT.
Definition cv.hpp:2676
MS_Mascot
Mascot: The name of the Mascot search engine.
Definition cv.hpp:4050
MS_DirecTag
DirecTag: Tabb Lab software for generating sequence tags from tandem mass spectra.
Definition cv.hpp:5160
UNIMOD_Asp__Glu
Asp->Glu: Asp->Glu substitution.
Definition cv.hpp:10452
MS_ProteomeDiscoverer_Spectrum_Selector_Unrecognized_Activation_Type_Replacements
ProteomeDiscoverer:Spectrum Selector:Unrecognized Activation Type Replacements: Specifies the fragmen...
Definition cv.hpp:5262
UNIMOD_TMT
TMT: Native Tandem Mass Tag®.
Definition cv.hpp:10878
MS_ProteomeDiscoverer_Xtract_Overlapping_Remainder
ProteomeDiscoverer:Xtract:Overlapping Remainder: Fraction of the more abundant peak that an overlappi...
Definition cv.hpp:5328
MS_DFS
DFS: Thermo Scientific DFS HR GC-MS.
Definition cv.hpp:2592
MS_ITQ_900
ITQ 900: Thermo Scientific ITQ 900 GC-MS.
Definition cv.hpp:2580
MS_false_localization_rate
false localization rate: Estimation of the false localization rate for modification site assignment.
Definition cv.hpp:7590
MS_binary_data_compression_type
binary data compression type: Compression Type.
Definition cv.hpp:2325
MS_Paragon_special_factor
Paragon:special factor: The Paragon method setting indicating a list of one or more 'special factors'...
Definition cv.hpp:7791
MS_Paragon__ID_focus
Paragon: ID focus: A Paragon method setting that allows the inclusion of large sets of features such ...
Definition cv.hpp:7728
PEFF_GO
GO: Gene Ontology code.
Definition cv.hpp:228
MS_ProteomeDiscoverer_ion_settings
ProteomeDiscoverer:ion settings: Specifies the fragment ions and neutral losses that are calculated.
Definition cv.hpp:7437
UNIMOD_Xle__Tyr
Xle->Tyr: Leu/Ile->Tyr substitution.
Definition cv.hpp:11643
MS_peptide_level_quantification_datatype
peptide-level quantification datatype: The data type of the value reported in a QuantLayer for a pept...
Definition cv.hpp:8631
MS_S_lens_voltage
S-lens voltage: Potential difference setting of the Thermo Scientific S-lens stacked-ring ion guide i...
Definition cv.hpp:6153
UNIMOD_Succinyl
Succinyl: Succinic anhydride labeling reagent light form (N-term & K).
Definition cv.hpp:9531
MS_protein_group_level_global_FNR
protein group-level global FNR: Estimation of the global false negative rate of protein groups.
Definition cv.hpp:7830
UNIMOD_Phe__Thr
Phe->Thr: Phe->Thr substitution.
Definition cv.hpp:11559
MS_Pegasus_BT
Pegasus BT: LECO bench-top GC time-of-flight mass spectrometer.
Definition cv.hpp:8577
MS_label_free_raw_feature_quantitation
label-free raw feature quantitation: Label-free raw feature quantitation.
Definition cv.hpp:6501
MS_Result_file_URI
Result file URI: URI of one file labeled as 'Result', associated to one PX submission.
Definition cv.hpp:8967
MS_param__y_ion_NH3_DEPRECATED
param: y ion-NH3 DEPRECATED: Ion y-NH3 parameter information, type of product: y ion with lost ammoni...
Definition cv.hpp:3912
MS_param__y_ion_H3PO4_DEPRECATED
param: y ion-H3PO4 DEPRECATED: Ion y-H3PO4: y ion with lost phosphoric acid.
Definition cv.hpp:7803
MS_ion_pair_formation_OBSOLETE
ion-pair formation: The reaction of a molecule to form both a positive ion and negative ion fragment ...
Definition cv.hpp:1746
MS_database_IPI_cow
database IPI_cow: International Protein Index database for Bos taurus sequences.
Definition cv.hpp:4269
MS_TSQ_Quantis
TSQ Quantis: Thermo Scientific TSQ Quantis Triple Quadrupole MS.
Definition cv.hpp:9048
MS_ambiguous_residues
ambiguous residues: Children of this term describe ambiguous residues.
Definition cv.hpp:4485
UNIMOD_dHex_1_Hex_3_HexA_2_HexNAc_2_
dHex(1)Hex(3)HexA(2)HexNAc(2): DHex Hex(3) HexA(2) HexNAc(2).
Definition cv.hpp:13137
UNIMOD_dHex_1_Hex_1_HexNAc_3_
dHex(1)Hex(1)HexNAc(3): DHex Hex HexNAc(3).
Definition cv.hpp:12891
MS_matrix_solution_concentration
matrix solution concentration: Concentration of the chemical solution used as matrix.
Definition cv.hpp:3201
UNIMOD_NEIAA_2H_5_
NEIAA:2H(5): N-ethyl iodoacetamide-d5.
Definition cv.hpp:9786
UNIMOD_Dimethyl_2H_6_13C_2_
Dimethyl:2H(6)13C(2): Dimethylation.
Definition cv.hpp:9963
MS_number_of_peaks_used
number of peaks used: The number of peaks from the original peak list that are used to calculate the ...
Definition cv.hpp:3828
MS_leading_protein
leading protein: At least one protein within each group should be annotated as a leading protein to i...
Definition cv.hpp:7653
MS_selected_ion_monitoring
selected ion monitoring: The operation of a mass spectrometer in which the intensities of several spe...
Definition cv.hpp:981
MS_mass_analyzed_ion_kinetic_energy_spectrometry_OBSOLETE
mass analyzed ion kinetic energy spectrometry: Spectra that are obtained from a sector mass spectrome...
Definition cv.hpp:1299
MS_SEQUEST_modeCV
SEQUEST:modeCV: SEQUEST Mode Input Parameters.
Definition cv.hpp:3789
MS_ProteoWizard_idconvert
ProteoWizard idconvert: Converts, filters, and processes identifications from shotgun proteomics expe...
Definition cv.hpp:7065
MS_photoionization
photoionization: The ionization of an atom or molecule by a photon, written M + h?...
Definition cv.hpp:1335
MS_molecule_taxonomy
molecule taxonomy: The taxonomy of the resultant molecule from the search.
Definition cv.hpp:3726
MS_Andromeda
Andromeda: Andromeda is a peptide search engine.
Definition cv.hpp:7461
MS_quantification_data_processing
quantification data processing: Terms used to describe types of quantification data processing.
Definition cv.hpp:5997
MS_adduct_ion_attribute
adduct ion attribute: Attribute describing an adduct formation.
Definition cv.hpp:8847
UNIMOD_iTRAQ8plex_13C_6_15N_2_
iTRAQ8plex:13C(6)15N(2): Accurate mass for 115, 118, 119 & 121.
Definition cv.hpp:10860
UNIMOD_Arg_loss
Arg-loss: Loss of arginine due to transpeptidation.
Definition cv.hpp:12081
MS_TSQ_Quantum_Ultra_AM
TSQ Quantum Ultra AM: Thermo Scientific TSQ Quantum Ultra AM.
Definition cv.hpp:2898
MS_Mascot_PTM_site_assignment_confidence
Mascot:PTM site assignment confidence: Relative probability that PTM site assignment is correct,...
Definition cv.hpp:6480
UNIMOD_Hex_2_HexA_1_Pent_1_Sulf_1_
Hex(2)HexA(1)Pent(1)Sulf(1): Hex(2) HexA Pent Sulf.
Definition cv.hpp:12798
MS_selected_precursor_m_z
selected precursor m/z: Mass-to-charge ratio of a precursor ion selected for fragmentation.
Definition cv.hpp:7149
UNIMOD_His__Arg
His->Arg: His->Arg substitution.
Definition cv.hpp:10524
UNIMOD_Cys__Tyr
Cys->Tyr: Cys->Tyr substitution.
Definition cv.hpp:10428
UNIMOD_Hex_3_HexNAc_3_NeuAc_3_
Hex(3)HexNAc(3)NeuAc(3): Hex(3) HexNAc(3) NeuAc(3).
Definition cv.hpp:13746
UNIMOD_ICAT_G
ICAT-G: Gygi ICAT(TM) d0.
Definition cv.hpp:9393
UNIMOD_serotonylation
serotonylation: 5-glutamyl serotonin.
Definition cv.hpp:13797
MS_Bioworks_SRF_format
Bioworks SRF format: Thermo Finnigan SRF file format.
Definition cv.hpp:2895
MS_signal_to_noise_ratio
signal-to-noise ratio: Unitless number providing the ratio of the total measured intensity of a signa...
Definition cv.hpp:6066
UNIMOD_NDA
NDA: Naphthalene-2,3-dicarboxaldehyde.
Definition cv.hpp:10266
UNIMOD_HMVK
HMVK: Michael addition of hydroxymethylvinyl ketone to cysteine.
Definition cv.hpp:10047
UNIMOD_Label_13C_5_
Label:13C(5): 13C(5) Silac label.
Definition cv.hpp:10935
UNIMOD_dHex_2_HexNAc_5_
dHex(2)HexNAc(5): DHex(2) HexNAc(5).
Definition cv.hpp:13098
MS_Synapt_G2_S_HDMS
Synapt G2-S HDMS: Waters oa-ToF based Synapt G2-S HDMS.
Definition cv.hpp:5751
MS_no_nativeID_format
no nativeID format: No nativeID format indicates that the file tagged with this term does not contain...
Definition cv.hpp:3171
UNIMOD_Hex_2_
Hex(2): Lactosylation.
Definition cv.hpp:10329
UNIMOD_dHex_1_Hex_1_HexA_1_HexNAc_3_
dHex(1)Hex(1)HexA(1)HexNAc(3): DHex Hex HexA HexNAc(3).
Definition cv.hpp:12984
MS_TOPP_map_aligner
TOPP map aligner: Map aligner component of the TOPP software.
Definition cv.hpp:6888
MS_value_greater_than_zero_but_less_than_or_equal_to_one
value greater than zero but less than or equal to one: Positive value range less than or equal to 1.
Definition cv.hpp:7497
MS_Progenesis_protein_group_raw_abundance
Progenesis:protein group raw abundance: The data type raw abundance for protein groups produced by Pr...
Definition cv.hpp:8007
MS_ProteoAnnotator_count_alternative_peptides
ProteoAnnotator:count alternative peptides: The count of the number of peptide sequences mapped to no...
Definition cv.hpp:7875
UNIMOD_IED_Biotin
IED-Biotin: Biotinoyl-iodoacetyl-ethylenediamine.
Definition cv.hpp:9888
MS_____W_
(?<=W): Regular expression for 2-iodobenzoate.
Definition cv.hpp:6303
UNIMOD_dHex_1_Hex_5_HexNAc_4_
dHex(1)Hex(5)HexNAc(4): Fucosylated biantennary.
Definition cv.hpp:9915
UNIMOD_OxProBiotin
OxProBiotin: Oxidized Proline biotinylated with biotin-LC-hydrazide.
Definition cv.hpp:9585
MS_micrOTOF_Q_III
micrOTOF-Q III: Bruker Daltonics' micrOTOF-Q III: ESI Q-TOF, Nanospray, APCI, APPI,...
Definition cv.hpp:7347
MS_hydrazideTMT_quantitation_analysis
hydrazideTMT quantitation analysis: Quantitation analysis using the Thermo Fisher carbonyl-reactive h...
Definition cv.hpp:8697
MS_mass_trace_reporting__rectangles
mass trace reporting: rectangles: The mass trace of the features of this feature list specifies recta...
Definition cv.hpp:5892
MS_neutral_loss
neutral loss: The loss of an uncharged species during a rearrangement process. The value slot holds t...
Definition cv.hpp:1578
MS_proportional_OBSOLETE
proportional: When resolution is proportional with respect to m/z.
Definition cv.hpp:582
UNIMOD_dHex_3_Hex_1_HexNAc_3_Kdn_1_
dHex(3)Hex(1)HexNAc(3)Kdn(1): DHex(3) Hex HexNAc(3) Kdn.
Definition cv.hpp:13182
MS_membrane_inlet
membrane inlet: A semi-permeable membrane separator that permits the passage of gas sample directly t...
Definition cv.hpp:1758
MS_MS_Numpress_positive_integer_compression
MS-Numpress positive integer compression: Compression using MS-Numpress positive integer compression.
Definition cv.hpp:7389
UO_nmole_disk
nmole/disk: A unit which is equal to one nanomole per disk, where a disk is some physical surface/con...
Definition cv.hpp:14631
UO_gallon
gallon: An imperial volume unit which is equivalent to 4,546.09 millilitres, or 8 pints.
Definition cv.hpp:14883
MS_NBRF_PIR
NBRF PIR: The NBRF PIR was used as format.
Definition cv.hpp:4467
MS_spectrum_multiply_subsumable_protein
spectrum multiply subsumable protein: A protein for which the matched spectra are the same,...
Definition cv.hpp:8166
MS_sample_state
sample state: The chemical phase of a pure sample, or the state of a mixed sample.
Definition cv.hpp:270
MS_PEAKS_Studio
PEAKS Studio: PEAKS Studio software for data analysis.
Definition cv.hpp:6261
MS_enium_ion_OBSOLETE
enium ion: A positively charged lower-valency ion of the nonmetallic elements. The methenium ion is C...
Definition cv.hpp:1662
UNIMOD_Arg__Gln
Arg->Gln: Arg->Gln substitution.
Definition cv.hpp:10680
MS_source_attribute
source attribute: Property of a source device that need a value.
Definition cv.hpp:2046
MS_Pro_Quant
Pro Quant: Applied Biosystems|MDS SCIEX software for protein ID and quant by iTRAQ.
Definition cv.hpp:2679
UNIMOD_Xlink_BS2G_114_
Xlink:BS2G[114]: Water-quenched monolink of BS2-G crosslinker.
Definition cv.hpp:13572
UO_millisievert
millisievert: A dose equivalent unit which is equal to one thousandth of a sievert or 10^[-3] Sv.
Definition cv.hpp:14214
UNIMOD_Biotin_Thermo_21330
Biotin:Thermo-21330: Biotin_PEG4.
Definition cv.hpp:12357
UNIMOD_dHex
dHex: Fucose.
Definition cv.hpp:9891
MS_contact_email
contact email: Email address of the contact person or organization.
Definition cv.hpp:2418
UNIMOD_Biotin_Cayman_10013
Biotin:Cayman-10013: Was PGA1-biotin.
Definition cv.hpp:10395
UNIMOD_Phe__Gly
Phe->Gly: Phe->Gly substitution.
Definition cv.hpp:11535
MS_protein_level_p_value
protein-level p-value: Estimation of the p-value for proteins.
Definition cv.hpp:6027
MS_X_Tandem_expect
X!Tandem:expect: The X!Tandem expectation value.
Definition cv.hpp:4398
MS_infusion
infusion: The continuous flow of solution of a sample into the ionization source.
Definition cv.hpp:459
MS_Bruker_Container_format
Bruker Container format: Bruker Container raw file format.
Definition cv.hpp:7356
UNIMOD_2HPG
2HPG: Bis(hydroxphenylglyoxal) arginine.
Definition cv.hpp:9738
UNIMOD_LG_lactam_K
LG-lactam-K: Levuglandinyl - lysine lactam adduct.
Definition cv.hpp:10314
MS_peptide_end_on_chromosome
peptide end on chromosome: The overall end position on the chromosome to which a peptide has been map...
Definition cv.hpp:8376
MS_ProteomeDiscoverer_Spectrum_Selector_Precursor_Selection
ProteomeDiscoverer:Spectrum Selector:Precursor Selection: Determines which precursor mass to use for ...
Definition cv.hpp:5250
MS_chemical_compound
chemical compound: A substance formed by chemical union of two or more elements or ingredients in def...
Definition cv.hpp:3345
MS_surface_enhanced_laser_desorption_ionization
surface enhanced laser desorption ionization: The formation of ionized species in the gas phase from ...
Definition cv.hpp:1365
MS_merge_of_runs_of_1D_gel_bands
merge of runs of 1D gel bands: Attribute describing, how raw files build a raw file group.
Definition cv.hpp:5886
MS_SQID_deltaScore
SQID:deltaScore: The SQID result 'deltaScore'.
Definition cv.hpp:6078
UNIMOD_Xle__Thr
Xle->Thr: Leu/Ile->Thr substitution.
Definition cv.hpp:10530
UNIMOD_Crotonyl
Crotonyl: Crotonylation.
Definition cv.hpp:12216
UO_drachm
drachm: An imperial mass unit which is equivalent to 1.771,845,195,3125 grams, or 1/256 of 1 pound.
Definition cv.hpp:14889
UNIMOD_dHex_1_Hex_3_HexNAc_3_Pent_3_
dHex(1)Hex(3)HexNAc(3)Pent(3): DHex Hex(3) HexNAc(3) Pent(3) —OR— Hex(4) HexNAc(2) dHex(2) NeuAc.
Definition cv.hpp:12561
MS_crushed_crystal_MALDI_sample_preparation
crushed crystal MALDI sample preparation: Crushed-crystal MALDI sample preparation method.
Definition cv.hpp:6393
MS_transition_validated_with_an_MS_MS_spectrum_on_specified_instrument
transition validated with an MS/MS spectrum on specified instrument: The transition has been validate...
Definition cv.hpp:3441
UNIMOD_LG_pyrrole
LG-pyrrole: Levuglandinyl-lysine pyrrole adduct.
Definition cv.hpp:11178
MS_______E_E_
(?<=[^E]E): Regular expression for glutamyl endopeptidase.
Definition cv.hpp:6300
MS_collision_gas
collision gas: An inert gas used for collisional excitation. The term target gas is not recommended.
Definition cv.hpp:1830
MS_Byonic__Peptide_AbsLogProb
Byonic: Peptide AbsLogProb: The absolute value of the log-base10 of the Byonic posterior error probab...
Definition cv.hpp:7377
MS_iTRAQ_reagent_113
iTRAQ reagent 113: The name of the sample labelled with the iTRAQ reagent 113.
Definition cv.hpp:8322
MS_synchronous_prefilter_selection
synchronous prefilter selection: Synchronous prefilter selection.
Definition cv.hpp:8034
MS_SEQUEST_SelectAdvancedCV
SEQUEST:SelectAdvancedCV: SEQUEST Select Advanced Input Parameters.
Definition cv.hpp:3894
MS_gene_name
gene name: Name of the gene from which the protein is translated.
Definition cv.hpp:3510
MS_frag__c_ion___H2O
frag: c ion - H2O: Fragmentation information, type of product: c ion without water.
Definition cv.hpp:4950
MS_TOPP_peak_picker
TOPP peak picker: Peak picker component of the TOPP software.
Definition cv.hpp:6849
UNIMOD_Acetyldeoxyhypusine
Acetyldeoxyhypusine: Acetyldeoxyhypusine.
Definition cv.hpp:11382
UNIMOD_Gln__Xle
Gln->Xle: Gln->Leu/Ile substitution.
Definition cv.hpp:10659
UNIMOD_EQAT_2H_5_
EQAT:2H(5): EAPTA d5.
Definition cv.hpp:9759
MS_MS_Numpress_positive_integer_compression_followed_by_zlib_compression
MS-Numpress positive integer compression followed by zlib compression: Compression using MS-Numpress ...
Definition cv.hpp:8661
UO_degree_Fahrenheit
degree Fahrenheit: A temperature unit which is equal to 5/9ths of a kelvin. Negative 40 degrees Fahre...
Definition cv.hpp:14382
MS_massWolf
massWolf: A software for converting Waters raw directory format to mzXML or mzML. MassWolf was origin...
Definition cv.hpp:2220
UNIMOD_Biotin_HPDP
Biotin-HPDP: Pierce EZ-Link Biotin-HPDP.
Definition cv.hpp:9876
MS_MyriMatch_mzFidelity
MyriMatch:mzFidelity: The negative natural log probability that predicted peaks match to experimental...
Definition cv.hpp:5178
UNIMOD_Unknown_234
Unknown:234: Unidentified modification of 234.0742 found in open search.
Definition cv.hpp:13764
MS_ProteomeDiscoverer_Spectrum_Selector_Ionization_Source_OBSOLETE
ProteomeDiscoverer:Spectrum Selector:Ionization Source: Ionization source (electro-,...
Definition cv.hpp:5223
UNIMOD_Phe__Pro
Phe->Pro: Phe->Pro substitution.
Definition cv.hpp:11550
UO_microliters_per_minute
microliters per minute: A volumetric flow rate unit which is equal to one microliter volume through a...
Definition cv.hpp:14610
MS_dried_droplet_MALDI_matrix_preparation
dried droplet MALDI matrix preparation: Dried droplet in MALDI matrix preparation.
Definition cv.hpp:3204
MS_PTM_scoring_algorithm_version
PTM scoring algorithm version: Version of the post-translational modification scoring algorithm.
Definition cv.hpp:6339
UNIMOD_NIPCAM
NIPCAM: N-isopropylcarboxamidomethyl.
Definition cv.hpp:9411
UNIMOD_EQIGG
EQIGG: Sumo mutant Smt3-WT tail following trypsin digestion.
Definition cv.hpp:10998
MS_Xevo_Q_Tof
Xevo Q-Tof: Waters oa-ToF based Xevo Q-Tof.
Definition cv.hpp:5769
PEFF_Signal
Signal: Sequence range of signal peptide.
Definition cv.hpp:237
MS_quantitation_software_name
quantitation software name: Quantitation software name.
Definition cv.hpp:3876
MS_Byonic__Peptide_AbsLogProb2D
Byonic: Peptide AbsLogProb2D: The absolute value of the log-base10 Byonic two-dimensional posterior e...
Definition cv.hpp:7383
UNIMOD_Propyl
Propyl: Propyl.
Definition cv.hpp:12129
MS_ProteomeDiscoverer_Source_file_extension_OBSOLETE
ProteomeDiscoverer:Source file extension: File type (if not pepXML).
Definition cv.hpp:5625
MS_external_reference_keyword
external reference keyword: Free text attribute that can enrich the information about an entity.
Definition cv.hpp:6189
UNIMOD_Gly__Ala
Gly->Ala: Gly->Ala substitution.
Definition cv.hpp:10491
UO_catalytic__activity__concentration_unit
catalytic (activity) concentration unit: A concentration unit which is a standard measure of the amou...
Definition cv.hpp:14403
MS_source_sprayer
source sprayer: The source sprayer.
Definition cv.hpp:6219
MS_single_protein_identification_statistic
single protein identification statistic: Results specific for one protein as part of a protein ambigu...
Definition cv.hpp:3807
MS_TMT_reagent_129
TMT reagent 129: The name of the sample labelled with the TMT reagent 129.
Definition cv.hpp:8310
MS_XCMS_intf
XCMS:intf: Feature intensity produced by XCMS findPeaks() from baseline corrected integrated peak int...
Definition cv.hpp:8913
MS_TrypChymo
TrypChymo: Cleavage agent TrypChymo.
Definition cv.hpp:4347
MS_microelectrospray
microelectrospray: Electrospray ionization at a solvent flow rate of 300-800 nL/min where the flow is...
Definition cv.hpp:1761
PEFF_CC
CC: Entry associated comment.
Definition cv.hpp:222
UNIMOD_Asp__Thr
Asp->Thr: Asp->Thr substitution.
Definition cv.hpp:11484
MS______FYWLKR_____P_
(?<=[FYWLKR])(?!P): Regular expression for TrypChymo.
Definition cv.hpp:4422
MS_API_150EX_Prep
API 150EX Prep: Applied Biosystems/MDS SCIEX API 150EX Prep MS.
Definition cv.hpp:798
MS_Velos_Plus
Velos Plus: Thermo Scientific second generation Velos.
Definition cv.hpp:6141
MS_technical_replicate
technical replicate: The study variable is 'technical replicate'. The string value denotes the catego...
Definition cv.hpp:5838
UNIMOD_His__Gly
His->Gly: His->Gly substitution.
Definition cv.hpp:11607
UNIMOD_Hex_1_Pent_3_
Hex(1)Pent(3): Hex Pent(3).
Definition cv.hpp:12408
UNIMOD_ISD_z_2_ion
ISD_z+2_ion: ISD (z+2)-series.
Definition cv.hpp:11262
MS_transition_validation_attribute
transition validation attribute: Attributes of the quality of a transition that affect its selection ...
Definition cv.hpp:6060
MS_TopPIC_max_shift
TopPIC:max shift: Maximum value of the mass shift (in Dalton) of an unexpected modification.
Definition cv.hpp:9171
UNIMOD_dHex_2_Hex_4_HexNAc_1_
dHex(2)Hex(4)HexNAc(1): DHex(2) Hex(4) HexNAc.
Definition cv.hpp:13005
MS_modification_specificity_protein_C_term
modification specificity protein C-term: As parameter for search engine: apply the modification only ...
Definition cv.hpp:6624
UNIMOD_QQQTGG
QQQTGG: SUMOylation by SUMO-2/3.
Definition cv.hpp:11034
UNIMOD_Hex_2_HexNAc_2_Pent_1_
Hex(2)HexNAc(2)Pent(1): Hex2HexNAc2Pent1.
Definition cv.hpp:9696
MS_Paragon_total_protscore
Paragon:total protscore: The Paragon result 'Total ProtScore'.
Definition cv.hpp:3954
MS_Scaffold
Scaffold: Scaffold analysis software.
Definition cv.hpp:5082
UO_fluid_ounce
fluid ounce: An imperial volume unit which is equivalent to 28.413,0625 millilitres.
Definition cv.hpp:14871
MS_ProteomeDiscoverer_5__Dynamic_Modification_OBSOLETE
ProteomeDiscoverer:5. Dynamic Modification: ProteomeDiscoverer's 5th dynamic post-translational modif...
Definition cv.hpp:7443
MS_ReAdW
ReAdW: A software program for converting Thermo Finnigan RAW file format to mzXML or mzML....
Definition cv.hpp:2232
MS_6495A_Triple_Quadrupole_LC_MS
6495A Triple Quadrupole LC/MS: The 6495A Quadrupole LC/MS system is a Agilent liquid chromatography i...
Definition cv.hpp:8820
UNIMOD_Ala__Cys
Ala->Cys: Ala->Cys substitution.
Definition cv.hpp:11388
UNIMOD_dHex_1_Hex_2_HexNAc_3_Sulf_1_
dHex(1)Hex(2)HexNAc(3)Sulf(1): DHex Hex(2) HexNAc(3) Sulf.
Definition cv.hpp:13014
UNIMOD_Hex_1_HexNAc_2_dHex_2_Sulf_1_
Hex(1)HexNAc(2)dHex(2)Sulf(1): Hex HexNAc(2) dHex(2) Sulf.
Definition cv.hpp:13665
MS_fragmentation_score
fragmentation score: The fragmentation confidence score.
Definition cv.hpp:9093
MS_MS_GF_RawScore
MS-GF:RawScore: MS-GF raw score.
Definition cv.hpp:6597
MS_Conversion_to_mzXML
Conversion to mzXML: Conversion of a file format to Institute of Systems Biology mzXML file format.
Definition cv.hpp:2244
MS_Conversion_to_mzMLb
Conversion to mzMLb: Conversion of a file format to Proteomics Standards Initiative mzMLb file format...
Definition cv.hpp:8940
UNIMOD_dHex_2_Hex_2_HexNAc_4_Sulf_2_
dHex(2)Hex(2)HexNAc(4)Sulf(2): Sulf(2) dHex(2) Hex(2) HexNAc(4).
Definition cv.hpp:13710
MS_peptide_H_Score
peptide:H-Score: H-Score for peptide phosphorylation site location at the peptide-level.
Definition cv.hpp:8109
MS_No_variable_modifications_searched
No variable modifications searched: No variable modifications are included as a parameter for the sea...
Definition cv.hpp:7812
UO_length_unit
length unit: A unit which is a standard measure of the distance between two points.
Definition cv.hpp:13806
MS_ProteomeDiscoverer_Mascot_Weight_of_B_Ions
ProteomeDiscoverer:Mascot:Weight of B Ions: Determines if to use B ions for spectrum matching.
Definition cv.hpp:5646
MS_DB_filter_on_sequence_pattern
DB filter on sequence pattern: Filtering applied specifically by amino acid sequence pattern.
Definition cv.hpp:3579
UO_pixels_per_inch
pixels per inch: A spatial resolution unit which is a standard measure of the resolution of a compute...
Definition cv.hpp:14523
MS_interchannel_delay
interchannel delay: The duration of intervals between scanning, during which the instrument configura...
Definition cv.hpp:3342
MS_mzidLib
mzidLib: A library of Java routines for manipulating mzIdentML files.
Definition cv.hpp:7158
MS_TOF_MS_OBSOLETE
TOF-MS (time-of-flight mass spectrometer): An instrument that separates ions by m/z in a field-free r...
Definition cv.hpp:1422
MS_ProteinScape_SearchResultId
ProteinScape:SearchResultId: The SearchResultId of this peptide as SearchResult in the ProteinScape d...
Definition cv.hpp:4890
UNIMOD_Hex_1_HexNAc_1_NeuGc_3_
Hex(1)HexNAc(1)NeuGc(3): Hex HexNAc NeuGc(3).
Definition cv.hpp:13077
MS_search_engine_specific_score_for_protein_groups
search engine specific score for protein groups: Search engine specific protein group scores.
Definition cv.hpp:7554
UNIMOD_Glucosylgalactosyl
Glucosylgalactosyl: Glucosylgalactosyl hydroxylysine.
Definition cv.hpp:10101
MS_data_processing_software
data processing software: Data processing software.
Definition cv.hpp:4770
UNIMOD_dHex_2_Hex_1_HexNAc_1_Kdn_1_
dHex(2)Hex(1)HexNAc(1)Kdn(1): DHex(2) Hex HexNAc Kdn.
Definition cv.hpp:12885
UNIMOD_dHex_1_Hex_1_HexNAc_3_NeuGc_1_
dHex(1)Hex(1)HexNAc(3)NeuGc(1): DHex Hex HexNAc(3) NeuGc —OR— Hex(2) HexNAc(3) NeuAc.
Definition cv.hpp:13044
UNIMOD_SPITC
SPITC: 4-sulfophenyl isothiocyanate.
Definition cv.hpp:9819
UO_count_per_molar
count per molar: A rate unit which is equal to one over one molar.
Definition cv.hpp:14652
MS_proteoform_level_global_FDR
proteoform-level global FDR: Estimation of the global false discovery rate of proteoforms.
Definition cv.hpp:9144
UNIMOD_Xlink_DSS_155_
Xlink:DSS[155]: Ammonium-quenched monolink of DSS/BS3 crosslinker.
Definition cv.hpp:13407
MS_non_classical_ion_OBSOLETE
non-classical ion: Hyper-coordinated carbonium ion such as the penta-coordinated norbornyl cation....
Definition cv.hpp:1686
UNIMOD_Ub_amide
Ub-amide: Ub amide probe addition.
Definition cv.hpp:12030
UNIMOD_AROD
AROD: Cysteine modifier.
Definition cv.hpp:11154
MS_1200_series_LC_MSD_SL
1200 series LC/MSD SL: The 1200 Series LC/MSD SL ion trap belongs to the Agilent LC/MSD ion trap fami...
Definition cv.hpp:1998
MS_MaRiMba_OBSOLETE
MaRiMba: Software used to predict transitions for selected reaction monitoring experiments based on o...
Definition cv.hpp:3480
UNIMOD_Hex_1_Pent_2_
Hex(1)Pent(2): Hex Pent(2).
Definition cv.hpp:12369
UNIMOD_dHex_2_Hex_4_
dHex(2)Hex(4): DHex(2) Hex(4).
Definition cv.hpp:12903
UNIMOD_FMNC
FMNC: S-(4a-FMN).
Definition cv.hpp:10230
UNIMOD_Hex_3_HexNAc_4_
Hex(3)HexNAc(4): Biantennary (-2 galactose).
Definition cv.hpp:9918
MS_consecutive_reaction_monitoring_chromatogram_OBSOLETE
consecutive reaction monitoring chromatogram: Chromatogram created by creating an array of the measur...
Definition cv.hpp:4824
UNIMOD_Gly__Phe
Gly->Phe: Gly->Phe substitution.
Definition cv.hpp:11565
MS_consensusXML
consensusXML: OpenMS consensus map format.
Definition cv.hpp:8898
MS_charge_state
charge state: The charge state of the ion, single or multiple and positive or negatively charged.
Definition cv.hpp:396
UO_gigabasepair
gigabasepair: A unit equal to one billion base pairs.
Definition cv.hpp:14787
MS_retention_time
retention time: A time interval from the start of chromatography when an analyte exits a chromatograp...
Definition cv.hpp:3387
MS_SpectraST_discriminant_score_F
SpectraST:discriminant score F: SpectraST spectrum score.
Definition cv.hpp:4656
UNIMOD_HydroxymethylOP
HydroxymethylOP: 2-ammonio-6-[4-(hydroxymethyl)-3-oxidopyridinium-1-yl]- hexanoate.
Definition cv.hpp:11046
UNIMOD_TMAB
TMAB: 4-trimethyllammoniumbutyryl-.
Definition cv.hpp:10275
MS_ProteomeDiscoverer_Number_of_input4_spectra
ProteomeDiscoverer:Number of input4 spectra: Number of spectra from 4+ precursor ions.
Definition cv.hpp:5607
UNIMOD_Lys__Ser
Lys->Ser: Lys->Ser substitution.
Definition cv.hpp:11667
MS_OmniFlex
OmniFlex: Bruker Daltonics' OmniFlex: MALDI TOF.
Definition cv.hpp:915
MS_isomer
isomer: One of several species (or molecular entities) that have the same atomic composition (molecul...
Definition cv.hpp:9300
UNIMOD_dHex_1_Hex_3_HexA_1_HexNAc_3_Sulf_1_
dHex(1)Hex(3)HexA(1)HexNAc(3)Sulf(1): DHex Hex(3) HexA HexNAc(3) Sulf.
Definition cv.hpp:13200
UNIMOD_Hex_2_HexNAc_5_
Hex(2)HexNAc(5): Hex(2) HexNAc(5).
Definition cv.hpp:13113
UO_parts_per_hundred
parts per hundred: A dimensionless concentration notation which denotes the amount of a given substan...
Definition cv.hpp:14298
MS_MS2_tag_based_peptide_level_quantitation
MS2 tag-based peptide level quantitation: MS2 tag-based peptide level quantitation.
Definition cv.hpp:6519
MS_internal_reference_abundance
internal reference abundance: The absolute abundance of the spiked in reference peptide or protein us...
Definition cv.hpp:8001
MS_protein_group_level_identification_attribute
protein group-level identification attribute: Protein group level information.
Definition cv.hpp:7488
MS_peptide_D_Score
peptide:D-Score: D-Score for PTM site location at the peptide-level.
Definition cv.hpp:8112
MS_ProteomeDiscoverer_SEQUEST_FT_High_Confidence_XCorr_Charge4
ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge4: FT high confidence XCorr parameter for c...
Definition cv.hpp:5559
UNIMOD_Tyr__Arg
Tyr->Arg: Tyr->Arg substitution.
Definition cv.hpp:11985
UNIMOD_Pro__Pyrrolidinone
Pro->Pyrrolidinone: Proline oxidation to pyrrolidinone.
Definition cv.hpp:10020
UNIMOD_PS_Hapten
PS_Hapten: Reaction with phenyl salicylate (PS).
Definition cv.hpp:12195
MS_continuous_flow_fast_atom_bombardment
continuous flow fast atom bombardment: Fast atom bombardment ionization in which the analyte in solut...
Definition cv.hpp:441
MS_DSQ_II
DSQ II: Thermo Scientific DSQ II GC-MS.
Definition cv.hpp:2595
UNIMOD_IMID
IMID: IMID d0.
Definition cv.hpp:9555
MS_TripleTOF_6600
TripleTOF 6600: SCIEX TripleTOF 6600, a quadrupole - quadrupole - time-of-flight mass spectrometer.
Definition cv.hpp:8052
MS_pulse_counting
pulse counting: Definition to do.
Definition cv.hpp:690
UNIMOD_Label_13C_6_15N_2__Acetyl
Label:13C(6)15N(2)+Acetyl: Acetyl_13C(6) 15N(2) Silac label.
Definition cv.hpp:10992
MS_percolator_score
percolator:score: Percolator:score.
Definition cv.hpp:4881
UNIMOD_Label_2H_3__Oxidation
Label:2H(3)+Oxidation: Oxidised 2H(3) labelled Methionine.
Definition cv.hpp:12231
MS_decoy_peptide
decoy peptide: A putative identified peptide issued from a decoy sequence database.
Definition cv.hpp:7098
MS_quantitation_software_comment_or_customizations
quantitation software comment or customizations: Quantitation software comment or any customizations ...
Definition cv.hpp:5910
UNIMOD_dHex_1_Hex_2_HexNAc_2_NeuGc_3_
dHex(1)Hex(2)HexNAc(2)NeuGc(3): DHex Hex(2) HexNAc(2) NeuGc(3).
Definition cv.hpp:13284
MS_Proteomics_Standards_Initiative_Mass_Spectrometry_Vocabularies
Proteomics Standards Initiative Mass Spectrometry Vocabularies: Proteomics Standards Initiative Mass ...
Definition cv.hpp:117
UNIMOD_Hex_1_HexNAc_2_NeuAc_1_Sulf_1_
Hex(1)HexNAc(2)NeuAc(1)Sulf(1): Hex HexNAc(2) NeuAc Sulf.
Definition cv.hpp:12900
UNIMOD_dHex_2_Hex_3_HexNAc_4_Pent_1_
dHex(2)Hex(3)HexNAc(4)Pent(1): DHex(2) Hex(3) HexNAc(4) Pent.
Definition cv.hpp:12606
MS_API_2000
API 2000: Applied Biosystems/MDS SCIEX API 2000 MS.
Definition cv.hpp:801
MS_reporter_ion_normalized_value
reporter ion normalized value: Normalized value of MS2 reporter ion (e.g. iTraq).
Definition cv.hpp:5985
MS_TOPP_ConsensusID
TOPP ConsensusID: Computes a consensus identification from peptide identifications of several identif...
Definition cv.hpp:7011
UNIMOD_dHex_2_Hex_2_HexNAc_1_
dHex(2)Hex(2)HexNAc(1): DHex(2) Hex(2) HexNAc.
Definition cv.hpp:12858
MS_penning_ionization
penning ionization: Ionization that occurs through the interaction of two or more neutral gaseous spe...
Definition cv.hpp:1770
UNIMOD_Hex_7_HexNAc_2_
Hex(7)HexNAc(2): Hex(7) HexNAc(2).
Definition cv.hpp:12525
MS_nominal_mass_OBSOLETE
nominal mass: The mass of an ion or molecule calculated using the mass of the most abundant isotope o...
Definition cv.hpp:1086
MS_LipidXplorer
LipidXplorer: Software for consensual cross-platform lipidomics.
Definition cv.hpp:9327
MS_multiple_peak_list_nativeID_format__combined_spectra
multiple peak list nativeID format, combined spectra: Comma separated list of spectra that have been ...
Definition cv.hpp:8418
MS_isolation_window_target_m_z
isolation window target m/z: The primary or reference m/z about which the isolation window is defined...
Definition cv.hpp:3180
MS_param__x_ion
param: x ion: Parameter information, type of product: x ion with charge on the C-terminal side.
Definition cv.hpp:4209
UO_liter_per_kilogram
liter per kilogram: A specific volume unit which is equal to one liter volume occupied by one kilogra...
Definition cv.hpp:14388
MS_ProteinExtractor_MascotUniqueScore
ProteinExtractor:MascotUniqueScore: In the final result each protein must have at least one peptide a...
Definition cv.hpp:4695
UNIMOD_CyDye_Cy3
CyDye-Cy3: Cy3 CyDye DIGE Fluor saturation dye.
Definition cv.hpp:10296
MS_phosphoRS_site_probability_threshold
phosphoRS site probability threshold: Threshold for phosphoRS site probability.
Definition cv.hpp:8157
MS_database_type_nucleotide
database type nucleotide: Database contains nucleic acid sequences.
Definition cv.hpp:3696
UNIMOD_AzidoF
AzidoF: Azidophenylalanine.
Definition cv.hpp:13476
MS_supplemental_collision_induced_dissociation
supplemental collision-induced dissociation: The dissociation of an ion after supplemental collisiona...
Definition cv.hpp:8496
MS_ProteinExtractor_SequestWeighting
ProteinExtractor:SequestWeighting: Influence of SEQUEST search engine in the process of merging the s...
Definition cv.hpp:4713
UO_irradiance_unit
irradiance unit: A unit which is a standard measure of the power of electromagnetic radiation at a su...
Definition cv.hpp:14259
UNIMOD_Pyridylacetyl
Pyridylacetyl: Pyridylacetyl.
Definition cv.hpp:9426
MS_Paragon__cysteine_alkylation
Paragon: cysteine alkylation: The Paragon method setting indicating the actual cysteine alkylation ag...
Definition cv.hpp:7719
UO_electric_current_unit
electric current unit: A unit which is a standard measure of the flow of electric charge.
Definition cv.hpp:13815
MS_ion_chemical_type_OBSOLETE
ion chemical type: Ion Type.
Definition cv.hpp:2130
MS_MGF_raw_scans_OBSOLETE
MGF raw scans: OBSOLETE: replaced by MS:1000798 (peak list raw scans): This term can hold the raw sca...
Definition cv.hpp:4644
UO_dalton
dalton: An independently to the base SI units defined mass unit which is equal to one twelfth of the ...
Definition cv.hpp:14460
MS_chromatogram
chromatogram: The representation of detector response versus time.
Definition cv.hpp:2544
MS_NIST_MSP_format
NIST MSP format: MSP text format defined by the NIST.
Definition cv.hpp:8673
MS_HCTultra
HCTultra: Bruker Daltonics' HCTultra: ESI TOF, Nanospray, APCI, APPI.
Definition cv.hpp:2763
UNIMOD_Xlink_DSSO_158_
Xlink:DSSO[158]: Intact DSSO crosslinker.
Definition cv.hpp:13542
UNIMOD_PhosphoUridine
PhosphoUridine: Uridine phosphodiester.
Definition cv.hpp:10164
MS_Ascore_threshold
Ascore threshold: Threshold for Ascore PTM site location score.
Definition cv.hpp:8121
MS_baseline
baseline: An attribute of resolution when recording the detector response in absence of the analyte.
Definition cv.hpp:567
UNIMOD_Gln__Ala
Gln->Ala: Gln->Ala substitution.
Definition cv.hpp:11784
UNIMOD_Thr__Glu
Thr->Glu: Thr->Glu substitution.
Definition cv.hpp:11868
MS_spectral_count_feature
spectral count feature: Dummy decribing a spectral count feature.
Definition cv.hpp:6810
UNIMOD_Hex_1_HexNAc_1_NeuAc_1_NeuGc_1_
Hex(1)HexNAc(1)NeuAc(1)NeuGc(1): Hex HexNAc NeuAc NeuGc.
Definition cv.hpp:12915
MS_modification_position_score
modification position score: Modification position score.
Definition cv.hpp:7968
UNIMOD_dHex_1_Hex_3_HexNAc_6_
dHex(1)Hex(3)HexNAc(6): DHex Hex(3) HexNAc(6).
Definition cv.hpp:13386
MS_elution_time
elution time: The time of elution from all used chromatographic columns (one or more) in the chromato...
Definition cv.hpp:3177
UNIMOD_Label_13C_4_15N_1_
Label:13C(4)15N(1): 13C4 15N1 label for SILAC.
Definition cv.hpp:12108
MS_magnetic_sector
magnetic sector: A device that produces a magnetic field perpendicular to a charged particle beam tha...
Definition cv.hpp:540
UNIMOD_Pro__pyro_Glu
Pro->pyro-Glu: Proline oxidation to pyroglutamic acid.
Definition cv.hpp:10017
MS_cross_link_donor
cross-link donor: The Cross-linking donor, assigned according to the following rules: the export soft...
Definition cv.hpp:7977
UNIMOD_Hex_1_HexNAc_1_Kdn_1_Sulf_1_
Hex(1)HexNAc(1)Kdn(1)Sulf(1): Hex HexNAc Kdn Sulf.
Definition cv.hpp:12786
MS_SI_OBSOLETE
SI (suface ionization): The ionization of a neutral species when it interacts with a solid surface wi...
Definition cv.hpp:1380
MS_ProteomeDiscoverer_Search_Modifications_Only_For_Identified_Proteins
ProteomeDiscoverer:Search Modifications Only For Identified Proteins: Influences the modifications se...
Definition cv.hpp:5523
MS_MzStar
MzStar: A software program for converting Applied Biosystems wiff file format to mzXML format....
Definition cv.hpp:2235
MS_Waters_instrument_model
Waters instrument model: Waters Corporation instrument model.
Definition cv.hpp:717
UNIMOD_Arg__Phe
Arg->Phe: Arg->Phe substitution.
Definition cv.hpp:11838
MS_Micromass_PKL_format
Micromass PKL format: Micromass PKL file format.
Definition cv.hpp:2304
MS_Trans_Proteomic_Pipeline
Trans-Proteomic Pipeline: A suite of open source tools for the processing of MS2 proteomics data deve...
Definition cv.hpp:7302
MS_protein_ratio
protein ratio: Protein ratio.
Definition cv.hpp:3861
UO_turns_per_second
turns per second: A rotational frequency unit which is equal to the number complete turn in a period ...
Definition cv.hpp:14079
MS_association_reaction_OBSOLETE
association reaction: The reaction of an ion with a neutral species in which the reactants combine to...
Definition cv.hpp:1800
MS_dataset_submitter
dataset submitter: A person who submits a dataset to a repository.
Definition cv.hpp:6555
MS_isotopomer
isotopomer: An isomer that differs from another only in the spatial distribution of the constitutive ...
Definition cv.hpp:9303
MS_metabolic_labelling__heavy_N__mainly_15N_
metabolic labelling: heavy N (mainly 15N): Metabolic labelling: heavy N (mainly 15N).
Definition cv.hpp:6654
MS_Finnigan_MAT_instrument_model
Finnigan MAT instrument model: Finnigan MAT instrument model.
Definition cv.hpp:2079
MS_target_MRM_transition
target MRM transition (target SRM transition): A transition used to target a specific compound that m...
Definition cv.hpp:6459
UNIMOD_dHex_1_Hex_4_HexNAc_5_Sulf_1_
dHex(1)Hex(4)HexNAc(5)Sulf(1): DHex Hex(4) HexNAc(5) Sulf.
Definition cv.hpp:12693
MS_ProteomeDiscoverer_Number_of_input5_spectra
ProteomeDiscoverer:Number of input5 spectra: Number of spectra from 5+ precursor ions.
Definition cv.hpp:5610
UNIMOD_HexNAc_3_
HexNAc(3): HexNAc(3).
Definition cv.hpp:12384
MS_peptide_phosphoRS_score
peptide:phosphoRS score: phosphoRS score for PTM site location at the peptide-level.
Definition cv.hpp:8103
UNIMOD_Arg__Trp
Arg->Trp: Arg->Trp substitution.
Definition cv.hpp:10665
MS_ProteomeDiscoverer_Mascot_Max_MGF_File_Size
ProteomeDiscoverer:Mascot:Max MGF File Size: Maximum size of the .mgf (Mascot Generic Format) file in...
Definition cv.hpp:5358
UNIMOD_AHA_SS_CAM
AHA-SS_CAM: Carbamidomethylated form of reductively cleaved tag coupled to azidohomoalanine.
Definition cv.hpp:12003
UO_luminance_unit
luminance unit: A unit which is a standard measure of the luminous intensity impinging on a given are...
Definition cv.hpp:13962
MS_vertical_ionization
vertical ionization: A process in which an electron is removed from or added to a molecule without a ...
Definition cv.hpp:1797
UNIMOD_dHex_1_Hex_2_HexA_1_HexNAc_1_Sulf_1_
dHex(1)Hex(2)HexA(1)HexNAc(1)Sulf(1): DHex Hex(2) HexA HexNAc Sulf.
Definition cv.hpp:12894
MS_MBMS_OBSOLETE
MBMS (molecular beam mass spectrometry): A mass spectrometry technique in which the sample is introdu...
Definition cv.hpp:1074
UNIMOD_Cy3b_maleimide
Cy3b-maleimide: Fluorescent dye that labels cysteines.
Definition cv.hpp:10968
MS_6560_Q_TOF_LC_MS
6560 Q-TOF LC/MS: The 6560 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrum...
Definition cv.hpp:8796
MS_D_Score
D-Score: D-Score for PTM site location at the PSM-level.
Definition cv.hpp:8061
MS_autoflex_II
autoflex II: Bruker Daltonics' autoflex II: MALDI TOF.
Definition cv.hpp:810
UNIMOD_dHex_1_Hex_3_HexNAc_4_Pent_2_
dHex(1)Hex(3)HexNAc(4)Pent(2): DHex Hex(3) HexNAc(4) Pent(2).
Definition cv.hpp:12600
UNIMOD_dHex_2_Hex_3_HexNAc_2_Sulf_1_
dHex(2)Hex(3)HexNAc(2)Sulf(1): DHex(2) Hex(3) HexNAc(2) Sulf.
Definition cv.hpp:13065
UNIMOD_Xlink_BuUrBu_85_
Xlink:BuUrBu[85]: Bu fragment of BuUrBu crosslinker.
Definition cv.hpp:13530
UNIMOD_Asp__Asn
Asp->Asn: Asp->Asn substitution.
Definition cv.hpp:10443
UNIMOD_Hex_1_HexNAc_2_NeuGc_1_
Hex(1)HexNAc(2)NeuGc(1): Hex HexNAc(2) NeuGc.
Definition cv.hpp:12879
UO_pressure_unit
pressure unit: A unit which is a standard measure of the force applied to a given area.
Definition cv.hpp:14130
MS_Compass_Security_Pack
Compass Security Pack: Bruker compass Security Pack software.
Definition cv.hpp:2817
MS_additional_description_OBSOLETE
additional description: Terms to describe Additional.
Definition cv.hpp:1977
MS_Pepitome_mzFidelity
Pepitome:mzFidelity (MyriMatch:mzFidelity): The negative natural log probability that predicted peaks...
Definition cv.hpp:5181
MS_reflectron
reflectron: A time-of-flight mass spectrometer that uses a static electric field to reverse the direc...
Definition cv.hpp:1461
MS_spectrum_identifier_nativeID_format__combined_spectra
spectrum identifier nativeID format, combined spectra: Comma separated list of spectra that have been...
Definition cv.hpp:8427
UNIMOD_Trp__Asn
Trp->Asn: Trp->Asn substitution.
Definition cv.hpp:11946
UO_power_unit
power unit: A unit which is a standard measure power or the rate of doing work.
Definition cv.hpp:14142
MS_6530B_Q_TOF_LC_MS
6530B Q-TOF LC/MS: The 6530B Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instr...
Definition cv.hpp:8781
MS_peptide_consensus_list_attribute
peptide consensus list attribute: Attribute describing a peptide consensus list.
Definition cv.hpp:6792
UO_mebibyte
mebibyte: An information unit which is equal to 1024 KiB.
Definition cv.hpp:14535
UO_area_unit
area unit: A unit which is a standard measure of the amount of a 2-dimensional flat surface.
Definition cv.hpp:13944
MS_iTRAQ_quantitation_analysis
iTRAQ quantitation analysis: Quantification analysis using the SCIEX amine-reactive isobaric tags for...
Definition cv.hpp:5925
MS_ProteomeDiscoverer_Dynamic_Modification
ProteomeDiscoverer:Dynamic Modification: Determine dynamic post-translational modifications (PTMs).
Definition cv.hpp:5346
MS_Microsoft_Excel
Microsoft Excel: Microsoft Excel (can be used for spectral counting).
Definition cv.hpp:6627
MS_Proline
Proline: The Proline software suite for mass spectrometry based proteomics.
Definition cv.hpp:9366
MS_TopFD
TopFD: Top-down mass spectral feature detection.
Definition cv.hpp:9129
MS_ProteomeDiscoverer_Source_Files_old_OBSOLETE
ProteomeDiscoverer:Source Files old: Input pepXML files (old).
Definition cv.hpp:5631
UO_megabasepair
megabasepair: A unit equal to one million base pairs
Definition cv.hpp:14784
UO_kilobasepair
kilobasepair: A unit equal to one thousand base pairs.
Definition cv.hpp:14781
MS_Atmostpheric_Pressure_Photoionization_OBSOLETE
Atmostpheric Pressure Photoionization: Atmospheric pressure chemical ionization in which the reactant...
Definition cv.hpp:1140
UO_gram_per_cubic_centimeter
gram per cubic centimeter: A mass unit density which is equal to mass of an object in grams divided b...
Definition cv.hpp:14055
UNIMOD_dHex_2_Hex_4_HexA_1_HexNAc_3_Sulf_1_
dHex(2)Hex(4)HexA(1)HexNAc(3)Sulf(1): DHex(2) Hex(4) HexA HexNAc(3) Sulf.
Definition cv.hpp:13287
MS_electron_multiplier_tube
electron multiplier tube: A device to amplify the current of a beam or packet of charged particles or...
Definition cv.hpp:657
UO_watt_hour
watt-hour: An energy unit which is equal to the amount of electrical energy equivalent to a one-watt ...
Definition cv.hpp:14466
UNIMOD_Xlink_DMP_154_
Xlink:DMP[154]: Free monolink of DMP crosslinker.
Definition cv.hpp:10263
MS_faraday_cup
faraday cup: A conducting cup or chamber that intercepts a charged particle beam and is electrically ...
Definition cv.hpp:663
MS_HCTplus
HCTplus: Bruker Daltonics' HCTplus: ESI Q-TOF, Nanospray, APCI, APPI.
Definition cv.hpp:849
MS_ProteomeDiscoverer_Mascot_Taxonomy_OBSOLETE
ProteomeDiscoverer:Mascot:Taxonomy: Limits searches to entries from a particular species or group of ...
Definition cv.hpp:5409
UNIMOD_Biotin_Cayman_10141
Biotin:Cayman-10141: Was 15dB-biotin.
Definition cv.hpp:10392
MS_6120A_Quadrupole_LC_MS
6120A Quadrupole LC/MS: The 6120A Quadrupole LC/MS system is a Agilent liquid chromatography instrume...
Definition cv.hpp:2004
UNIMOD_CLIP_TRAQ_4
CLIP_TRAQ_4: CLIP_TRAQ_4.
Definition cv.hpp:10389
UO_kilo
kilo: A prefix in the metric system denoting a factor of one thousand.
Definition cv.hpp:14679
UNIMOD_Ammonium
Ammonium: Replacement of proton with ammonium ion.
Definition cv.hpp:11259
UNIMOD_AFB1_Dialdehyde
AFB1_Dialdehyde: Adduction of aflatoxin B1 Dialdehyde to lysine.
Definition cv.hpp:13605
MS_post_source_decay
post-source decay: A technique specific to reflectron time-of-flight mass spectrometers where product...
Definition cv.hpp:765
MS_software_vendor
software vendor: Software vendor role.
Definition cv.hpp:4221
MS_SEQUEST_OutputLines
SEQUEST:OutputLines: Number of peptide results to show.
Definition cv.hpp:3522
UO_gill
gill: An imperial volume unit which is equivalent to 142.065,3125 millilitres.
Definition cv.hpp:14874
UO_nanovolt
nanovolt: An electric potential difference unit which is equal to one billionth of a volt or 10^[-12]...
Definition cv.hpp:14547
UNIMOD_Hex_6_HexNAc_4_Me_3_
Hex(6)HexNAc(4)Me(3): Hex(6) HexNAc(4) Me(3).
Definition cv.hpp:12651
MS_contact_fax_number
contact fax number: Fax number for the contact person or organization.
Definition cv.hpp:5682
UNIMOD_HNE
HNE: 4-hydroxynonenal (HNE).
Definition cv.hpp:9501
MS_constant_neutral_mass_gain_spectrum
constant neutral mass gain spectrum (constant neutral gain spectrum): A spectrum formed of all produc...
Definition cv.hpp:1542
UNIMOD_Methyl_2H_3_13C_1_
Methyl:2H(3)13C(1): Monomethylation.
Definition cv.hpp:9960
MS_volt_second_per_square_centimeter
volt-second per square centimeter: An electrical mobility unit that equals the speed [cm/s] an ion re...
Definition cv.hpp:8862
UNIMOD_dHex_1_Hex_4_HexNAc_4_Pent_1_
dHex(1)Hex(4)HexNAc(4)Pent(1): DHex Hex(4) HexNAc(4) Pent.
Definition cv.hpp:12621
MS_cleavage_agent_name
cleavage agent name: The name of the cleavage agent.
Definition cv.hpp:3621
MS_heavy_labeled_peptide
heavy labeled peptide: A peptide that has been created or labelled with some heavier-than-usual isoto...
Definition cv.hpp:3375
MS_ITQ_700
ITQ 700: Thermo Scientific ITQ 700 GC-MS.
Definition cv.hpp:2577
MS_Shimadzu_Corporation_software
Shimadzu Corporation software: Shimadzu Corporation software.
Definition cv.hpp:5070
MS_taxonomy_nomenclature_OBSOLETE
taxonomy nomenclature: OBSOLETE: The system used to indicate taxonomy. There should be an enumerated ...
Definition cv.hpp:3729
UNIMOD_Pentylamine
Pentylamine: Labeling transglutaminase substrate on glutamine side chain.
Definition cv.hpp:10962
MS_API_3000
API 3000: Applied Biosystems/MDS SCIEX API 3000 MS.
Definition cv.hpp:804
UNIMOD_cysTMT
cysTMT: Native cysteine-reactive Tandem Mass Tag®.
Definition cv.hpp:11247
MS_ProteinExtractor_ProteinSolverPeptideScoreThreshold
ProteinExtractor:ProteinSolverPeptideScoreThreshold: Only peptides with scores higher than that thres...
Definition cv.hpp:4719
UNIMOD_Hex_5_HexNAc_4_Sulf_1_
Hex(5)HexNAc(4)Sulf(1): Hex(5) HexNAc(4) Sulf.
Definition cv.hpp:12594
MS_ProteomeDiscoverer_Number_of_input2_spectra
ProteomeDiscoverer:Number of input2 spectra: Number of spectra from 2+ precursor ions.
Definition cv.hpp:5601
MS_param__z_2_ion
param: z+2 ion: Parameter information, type of product: z+2 ion.
Definition cv.hpp:4626
MS_suspension
suspension: State if the sample is in suspension form.
Definition cv.hpp:432
UO_effective_dose_unit
effective dose unit: A unit which is a standard measure of the estimate of the stochastic effect that...
Definition cv.hpp:14577
UNIMOD_Crotonaldehyde
Crotonaldehyde: Crotonaldehyde.
Definition cv.hpp:9798
MS_protein_level_local_FDR
protein-level local FDR: Estimation of the local false discovery rate of proteins.
Definition cv.hpp:7542
UNIMOD_PropylNAGthiazoline
PropylNAGthiazoline: Propyl-1,2-dideoxy-2\'-methyl-alpha-D-glucopyranoso-[2,1-d]-Delta2\'-thiazoline.
Definition cv.hpp:10335
MS_Scan_Function_OBSOLETE
Scan Function: Describes the type of mass analysis being performed. Two primary modes are: typical ac...
Definition cv.hpp:312
UNIMOD_Biotin
Biotin: Biotinylation.
Definition cv.hpp:9378
MS_esquire_6000
esquire 6000: Bruker Daltonics' esquire 6000: linear ion trap, ESI, MALDI, Nanospray,...
Definition cv.hpp:837
MS_LTQ_Velos
LTQ Velos: Thermo Scientific LTQ Velos MS.
Definition cv.hpp:3261
UNIMOD_Arg__Cys
Arg->Cys: Arg->Cys substitution.
Definition cv.hpp:10686
MS_Amanda_AmandaScore
Amanda:AmandaScore: The Amanda score of the scoring function for a PSM.
Definition cv.hpp:7407
MS_regular_expressions_for_a_GUID
).
Definition cv.hpp:7140
MS_decoy_DB_from_EST_OBSOLETE
decoy DB from EST: Decoy database from an expressed sequence tag nucleotide sequence database.
Definition cv.hpp:4287
UNIMOD_Hex_5_HexNAc_5_
Hex(5)HexNAc(5): Hex(5) HexNAc(5).
Definition cv.hpp:13383
MS_quick_and_dirty_MALDI_sample_preparation
quick and dirty MALDI sample preparation: Quick & dirty (Q&D) sample preparation separating matrix ha...
Definition cv.hpp:6408
MS_spectrum_same_set_protein
spectrum same-set protein: A protein which is indistinguishable or equivalent to another protein,...
Definition cv.hpp:5199
UO_microgram_per_liter
microgram per liter: A mass unit density which is equal to mass of an object in micrograms divided by...
Definition cv.hpp:14700
MS_iTRAQ_reagent_121
iTRAQ reagent 121: The name of the sample labelled with the iTRAQ reagent 121.
Definition cv.hpp:8343
MS_API_150EX
API 150EX: Applied Biosystems/MDS SCIEX API 150EX MS.
Definition cv.hpp:795
MS_DSQ
DSQ: ThermoFinnigan DSQ GC-MS.
Definition cv.hpp:2574
MS_ion_optics_attribute
ion optics attribute: Ion optics involves components that help focus ion streams in mass spectrometry...
Definition cv.hpp:2061
MS_search_engine_specific_score_for_proteins
search engine specific score for proteins: Search engine specific protein scores.
Definition cv.hpp:7539
UNIMOD_Formyl
Formyl: Formylation.
Definition cv.hpp:9603
MS_ProteomeDiscoverer_Spectrum_Selector_Unrecognized_Charge_Replacements
ProteomeDiscoverer:Spectrum Selector:Unrecognized Charge Replacements: Specifies the charge state of ...
Definition cv.hpp:5265
UNIMOD_dHex_1_Hex_5_HexA_1_HexNAc_3_Sulf_2_
dHex(1)Hex(5)HexA(1)HexNAc(3)Sulf(2): DHex Hex(5) HexA HexNAc(3) Sulf(2).
Definition cv.hpp:12702
MS_AXIMA_CFR_plus
AXIMA-CFR plus: Shimadzu Biotech AXIMA-CFR plus MS.
Definition cv.hpp:2487
MS_Asp_N
Asp-N: Endoproteinase Asp-N.
Definition cv.hpp:4320
MS_PTM_localization_score_threshold
PTM localization score threshold: Threshold for PTM site location score.
Definition cv.hpp:8118
MS_quistor_OBSOLETE
quistor: An abbreviation of quadrupole ion storage trap. This term is synonymous with Paul Ion Trap....
Definition cv.hpp:1458
UNIMOD_Asp__Trp
Asp->Trp: Asp->Trp substitution.
Definition cv.hpp:11487
MS_Mascot_total_ions
Mascot:total ions: The Mascot result 'Total ions'.
Definition cv.hpp:3981
UNIMOD_His__Trp
His->Trp: His->Trp substitution.
Definition cv.hpp:11625
UNIMOD_Asp__Arg
Asp->Arg: Asp->Arg substitution.
Definition cv.hpp:11478
MS_fast_ion_bombardment
fast ion bombardment: The ionization of any species by the interaction of a focused beam of ions havi...
Definition cv.hpp:1920
MS_DB_PI_filter_maximum
DB PI filter maximum: Maximum value of isoelectric point filter.
Definition cv.hpp:4044
MS_ProteomeDiscoverer_Mascot_Protein_CutOff_Score
ProteomeDiscoverer:Mascot:Protein CutOff Score: Minimum protein score in the IonScore column that eac...
Definition cv.hpp:5394
UNIMOD_Delta_H_4_C_3_
Delta:H(4)C(3): Propionaldehyde +40.
Definition cv.hpp:9807
UNIMOD_Ala__Xle
Ala->Xle: Ala->Leu/Ile substitution.
Definition cv.hpp:11397
MS_SCION_SQ
SCION SQ: Bruker Daltonics' SCION SQ: GC-single quadrupole.
Definition cv.hpp:7335
MS_constant_neutral_loss_spectrum
constant neutral loss spectrum: A spectrum formed of all product ions that have been produced with a ...
Definition cv.hpp:1545
UO_disintegrations_per_minute
disintegrations per minute: An activity (of a radionuclide) unit which is equal to the activity of a ...
Definition cv.hpp:14241
UNIMOD_dHex_1_Hex_1_HexNAc_1_NeuAc_1_
dHex(1)Hex(1)HexNAc(1)NeuAc(1): DHex Hex HexNAc NeuAc.
Definition cv.hpp:12840
UNIMOD_Dimethylphosphothione
Dimethylphosphothione: O-dimethylphosphothione.
Definition cv.hpp:13785
MS_phosphoRS_score
phosphoRS score: phosphoRS score for PTM site location at the PSM-level.
Definition cv.hpp:6330
UO_kilogram_per_hectare
kilogram per hectare: An area density unit which is equal to the mass of an object in kilograms divid...
Definition cv.hpp:14646
UNIMOD_Trimethyl_13C_3_2H_9_
Trimethyl:13C(3)2H(9): 3-fold methylation with fully labelled methyl groups.
Definition cv.hpp:12345
UNIMOD_DHP
DHP: Dehydropyrrolizidine alkaloid (dehydroretronecine) on cysteines.
Definition cv.hpp:10287
MS_ProteomeDiscoverer_SEQUEST_FT_Medium_Confidence_XCorr_Charge1
ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge1: FT medium confidence XCorr parameter f...
Definition cv.hpp:5562
MS_QIT
QIT (quadrupole ion trap): Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional...
Definition cv.hpp:552
MS_anchor_protein
anchor protein: A representative protein selected from a set of sequence same-set or spectrum same-se...
Definition cv.hpp:5187
MS_acquisition_parameter
acquisition parameter: Parameters used in the mass spectrometry acquisition.
Definition cv.hpp:6285
UNIMOD_HNE_Delta_H_2_
HNE+Delta:H(2): Reduced 4-Hydroxynonenal.
Definition cv.hpp:9972
UNIMOD_Hex_7_HexNAc_3_Phos_1_
Hex(7)HexNAc(3)Phos(1): Hex(7) HexNAc(3) Phos.
Definition cv.hpp:12648
UNIMOD_Lys__Met
Lys->Met: Lys->Met substitution.
Definition cv.hpp:10551
MS_Thermo_Scientific_instrument_model
Thermo Scientific instrument model: Thermo Scientific instrument model.
Definition cv.hpp:2082
MS_ion_stability_type_OBSOLETE
ion stability type: Stability type of the ion.
Definition cv.hpp:7479
MS_TopPIC_spectral_E_value
TopPIC:spectral E-value: TopPIC spectrum-level E-value.
Definition cv.hpp:9207
MS_ProteomeDiscoverer_SEQUEST_Std_Medium_Confidence_XCorr_Charge1
ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge1: Standard medium confidence XCorr para...
Definition cv.hpp:5538
UNIMOD_dHex_1_Hex_3_HexNAc_5_
dHex(1)Hex(3)HexNAc(5): DHex Hex(3) HexNAc(5).
Definition cv.hpp:13368
MS_database_IPI_arabidopsis
database IPI_arabidopsis: International Protein Index database for Arabidopsis thaliana sequences.
Definition cv.hpp:4272
MS_Varian_instrument_model
Varian instrument model: Varian instrument model.
Definition cv.hpp:2067
MS_4000_QTRAP_OBSOLETE
4000 QTRAP: SCIEX or Applied Biosystems|MDS SCIEX QTRAP 4000.
Definition cv.hpp:3312
UNIMOD_dHex_1_Hex_7_HexNAc_2_
dHex(1)Hex(7)HexNAc(2): DHex Hex(7) HexNAc(2).
Definition cv.hpp:12585
MS_distinct_peptide_level_FDRScore
distinct peptide-level FDRScore: MzidLibrary FDRScore for distinct peptides once redundant identifica...
Definition cv.hpp:7530
UNIMOD_Label_2H_9_13C_6_15N_2_
Label:2H(9)13C(6)15N(2): 13C(6) 15N(2) (D)9 SILAC label.
Definition cv.hpp:10821
MS_delta_M
delta M: The difference between a theoretically calculated molecular mass M and the corresponding exp...
Definition cv.hpp:6354
MS_mass_chromatogram
mass chromatogram: A plot of the relative abundance of a beam or other collection of ions as a functi...
Definition cv.hpp:3126
MS_database_IPI_zebrafish
database IPI_zebrafish: International Protein Index database for Danio rerio sequences.
Definition cv.hpp:4263
MS_ASAPRatio
ASAPRatio: A program in the TPP that calculates PSM, peptide, and protein-level abundances based on 2...
Definition cv.hpp:8175
MS_protein_group_level_local_FDR
protein group-level local FDR: Estimation of the local false discovery rate of protein groups.
Definition cv.hpp:7560
UNIMOD_Lipoyl
Lipoyl: Lipoyl.
Definition cv.hpp:9468
MS_ProteomeDiscoverer_Target_FDR_Strict
ProteomeDiscoverer:Target FDR Strict: Specifies the strict target false discovery rate (FDR,...
Definition cv.hpp:5406
MS_decreasing_m_z_scan
decreasing m/z scan: High to low direction in terms of m/z of the scan for scanning analyzers.
Definition cv.hpp:591
MS_cluster_ion_OBSOLETE
cluster ion: An ion formed by a multi-component atomic or molecular assembly of one or more ions with...
Definition cv.hpp:1647
MS_ProteomeDiscoverer_Reference_Database_OBSOLETE
ProteomeDiscoverer:Reference Database: Full path database name.
Definition cv.hpp:5619
MS_isolation_window_upper_offset
isolation window upper offset: The extent of the isolation window in m/z above the isolation window t...
Definition cv.hpp:3186
MS_dynode
dynode: One of a series of electrodes in a photomultiplier tube. Such an arrangement is able to ampli...
Definition cv.hpp:1614
MS_ProteomeDiscoverer_Mascot_User_Name_OBSOLETE
ProteomeDiscoverer:Mascot:User Name: Name of the user submitting the Mascot search.
Definition cv.hpp:5370
MS_contact_role
contact role: Role of the contact person.
Definition cv.hpp:6543
UNIMOD_Methyl_PEO12_Maleimide
Methyl-PEO12-Maleimide: Methyl-PEO12-Maleimide.
Definition cv.hpp:11061
MS_spectrum_title
spectrum title: A free-form text title describing a spectrum.
Definition cv.hpp:3075
UNIMOD_Trp__Tyr
Trp->Tyr: Trp->Tyr substitution.
Definition cv.hpp:11961
UNIMOD_Ala__Lys
Ala->Lys: Ala->Lys substitution.
Definition cv.hpp:11400
MS_TOPP_SpectraFilterScaler
TOPP SpectraFilterScaler: Applies a filter to peak spectra after intensity scaling according to rank.
Definition cv.hpp:6876
MS_supplemental_collision_energy
supplemental collision energy: Energy for an ion experiencing supplemental collision with a stationar...
Definition cv.hpp:8499
MS_CAD
CAD (collision-induced dissociation): The dissociation of an ion after collisional excitation....
Definition cv.hpp:753
UO_angular_acceleration_unit
angular acceleration unit: A unit which is a standard measure of the rate of change of angular veloci...
Definition cv.hpp:13953
MS_MaxQuant_peptide_counts__unique_
MaxQuant:peptide counts (unique): The data type peptide counts (unique) produced by MaxQuant.
Definition cv.hpp:6105
MS_ions_series_considered_in_search
ions series considered in search: The description of the DEPRECATED ion fragment series (including ch...
Definition cv.hpp:3675
MS_mattauch_herzog_geometry_OBSOLETE
mattauch-herzog geometry: An arrangement for a double-focusing mass spectrometer in which a deflectio...
Definition cv.hpp:1446
UNIMOD_HexNAc
HexNAc: N-Acetylhexosamine.
Definition cv.hpp:9471
MS_ProteomeDiscoverer_Number_of_predicted_correct_proteins
ProteomeDiscoverer:Number of predicted correct proteins: Total number of predicted correct protein id...
Definition cv.hpp:5613
MS_two_sample_run
two sample run: The raw file contains the run of two samples (e.g. SILAC, metabolic labelling).
Definition cv.hpp:5871
UNIMOD_Thr__Pro
Thr->Pro: Thr->Pro substitution.
Definition cv.hpp:10740
MS_MALDI_Synapt_MS
MALDI Synapt MS: Waters oa-ToF based MALDI Synapt MS.
Definition cv.hpp:5742
UNIMOD_Gly__Glu
Gly->Glu: Gly->Glu substitution.
Definition cv.hpp:10500
MS_peptide_raw_area_OBSOLETE
peptide raw area: Peptide raw area.
Definition cv.hpp:3849
MS_6550A_iFunnel_Q_TOF_LC_MS
6550A iFunnel Q-TOF LC/MS: The 6550A Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatograp...
Definition cv.hpp:8772
MS_EThcD
EThcD (Electron-Transfer/Higher-Energy Collision Dissociation (EThcD)): A dissociation process combin...
Definition cv.hpp:8349
UO_watt_per_steradian_per_square_meter
watt per steradian per square meter: A radiance unit which is equal to one watt of radiant power inci...
Definition cv.hpp:14271
UNIMOD_Malonyl
Malonyl: Malonylation.
Definition cv.hpp:10899
MS_ion_mobility_attribute
ion mobility attribute: An attribute describing ion mobility searches.
Definition cv.hpp:9099
MS_precoated_MALDI_sample_plate
precoated MALDI sample plate: Precoated MALDI sample plate.
Definition cv.hpp:3213
UNIMOD_Thiophospho
Thiophospho: Thiophosphorylation.
Definition cv.hpp:9816
MS_unmapped_peptide
unmapped peptide: Within the context of a proteogenomics approach, a peptide sequence that has not be...
Definition cv.hpp:8640
MS_ProteinScape_ProfoundProbability
ProteinScape:ProfoundProbability: The Profound probability score stored by ProteinScape.
Definition cv.hpp:4896
MS_internal_protein_reference_used
internal protein reference used: States whether an internal protein reference is used or not in absol...
Definition cv.hpp:7998
UNIMOD_Biotin_PEO_Amine
Biotin-PEO-Amine: Biotin polyethyleneoxide amine.
Definition cv.hpp:9873
UNIMOD_Ala__Ser
Ala->Ser: Ala->Ser substitution.
Definition cv.hpp:10398
UNIMOD_dHex_2_Hex_3_HexNAc_3_Pent_1_
dHex(2)Hex(3)HexNAc(3)Pent(1): DHex(2) Hex(3) HexNAc(3) Pent.
Definition cv.hpp:12510
UNIMOD_dHex_1_Hex_4_
dHex(1)Hex(4): Hex4dHex1.
Definition cv.hpp:12246
MS_researcher
researcher: Researcher role.
Definition cv.hpp:4233
MS_Acquity_UPLC_FLR
Acquity UPLC FLR: Acquity UPLC Fluorescence Detector.
Definition cv.hpp:3156
UNIMOD_PhosphoribosyldephosphoCoA
PhosphoribosyldephosphoCoA: Phosphoribosyl dephospho-coenzyme A.
Definition cv.hpp:10107
UNIMOD_Val__Glu
Val->Glu: Val->Glu substitution.
Definition cv.hpp:10758
UNIMOD_QAT_2H_3_
QAT:2H(3): APTA d3.
Definition cv.hpp:9753
MS_protein_level_quantification_datatype
protein-level quantification datatype: The data type of the value reported in a QuantLayer for a prot...
Definition cv.hpp:8634
MS_TOPP_SpectraFilterWindowMower
TOPP SpectraFilterWindowMower: Applies a filter of the largest peaks in a sliding window over a peak ...
Definition cv.hpp:6885
UNIMOD_Glu__Tyr
Glu->Tyr: Glu->Tyr substitution.
Definition cv.hpp:11523
UNIMOD_SUMO2135
SUMO2135: SUMOylation by SUMO-1 after tryptic cleavage.
Definition cv.hpp:11217
UNIMOD_Phe__Cys
Phe->Cys: Phe->Cys substitution.
Definition cv.hpp:10479
MS_quantile_normalization__proteins
quantile normalization, proteins: Normalization of protein values to approach the same distribution.
Definition cv.hpp:6003
UNIMOD_Met__Arg
Met->Arg: Met->Arg substitution.
Definition cv.hpp:10590
UNIMOD_PhosphoCytidine
PhosphoCytidine: Cytidine monophosphate.
Definition cv.hpp:13473
MS_SEQUEST_deltacn
SEQUEST:deltacn: The SEQUEST result 'DeltaCn'.
Definition cv.hpp:3927
MS_total_ion_current
total ion current: The sum of all the separate ion currents carried by the ions of different m/z cont...
Definition cv.hpp:1407
UO_ton_per_hectare
ton per hectare: An area density unit which is equal to the mass of an object in tons divided by the ...
Definition cv.hpp:14766
MS_kinetic_energy_release_distribution_OBSOLETE
kinetic energy release distribution: Distribution of values of translational kinetic energy release f...
Definition cv.hpp:1284
UNIMOD_Arg__His
Arg->His: Arg->His substitution.
Definition cv.hpp:10677
UNIMOD_CuSMo
CuSMo: Copper sulfido molybdopterin cytosine dinuncleotide.
Definition cv.hpp:10233
UNIMOD_dHex_4_Hex_1_HexNAc_3_Kdn_1_
dHex(4)Hex(1)HexNAc(3)Kdn(1): DHex(4) Hex HexNAc(3) Kdn.
Definition cv.hpp:13242
UO_centiRay
centiRay: A unit of genetic map distance defined corresponding to an interval in which there is a 1% ...
Definition cv.hpp:14778
UO_counts_per_minute
counts per minute: An activity (of a radionuclide) unit which is equal to the number of light emissio...
Definition cv.hpp:14244
UNIMOD_Trp__Val
Trp->Val: Trp->Val substitution.
Definition cv.hpp:11958
MS_selected_ion_m_z
selected ion m/z: Mass-to-charge ratio of an selected ion.
Definition cv.hpp:2901
MS_file_format
file format: Format of data files.
Definition cv.hpp:4776
UNIMOD_Hex_1_HexNAc_1_NeuAc_3_
Hex(1)HexNAc(1)NeuAc(3): Hex HexNAc NeuAc(3).
Definition cv.hpp:13053
MS_database_nr
database nr: Non-redundant GenBank sequence database.
Definition cv.hpp:3711
MS_ProteomeDiscoverer_Precursor_Mass_Tolerance_OBSOLETE
ProteomeDiscoverer:Precursor Mass Tolerance: Mass window for which precursor ions are considered to b...
Definition cv.hpp:5391
UNIMOD_Hex_5_HexNAc_3_
Hex(5)HexNAc(3): Hex(5) HexNAc(3).
Definition cv.hpp:12489
MS_TopPIC_min_shift
TopPIC:min shift: Minimum value of the mass shift (in Dalton) of an unexpected modification.
Definition cv.hpp:9174
MS_MultiQuant
MultiQuant: Applied Biosystems|MDS SCIEX software for MRM-based quantitation.
Definition cv.hpp:2691
MS_Bruker_FID_nativeID_format__combined_spectra
Bruker FID nativeID format, combined spectra: Bruker FID comma separated list of spectra that have be...
Definition cv.hpp:8415
UO_millimolal
millimolal: A molality unit which is equal to one thousandth of a molal or 10^[-3] m.
Definition cv.hpp:14010
UNIMOD_Xlink_BuUrBu_213_
Xlink:BuUrBu[213]: Ammonia quenched monolink of BuUrBu crosslinker.
Definition cv.hpp:13533
MS_ProteomeDiscoverer_1__Static_Modification_OBSOLETE
ProteomeDiscoverer:1. Static Modification: ProteomeDiscoverer's 1st static post-translational modific...
Definition cv.hpp:6684
UNIMOD_Hex_1_HexNAc_1_dHex_1_
Hex(1)HexNAc(1)dHex(1): Hex1HexNAc1dHex1.
Definition cv.hpp:9663
MS_FileMerger
FileMerger: Merges several MS files into one file.
Definition cv.hpp:2943
UNIMOD_Label_13C_3_
Label:13C(3): 13C3 label for SILAC.
Definition cv.hpp:12102
MS_explorer
explorer: IonSpec Explorer MS.
Definition cv.hpp:840
MS_SEND
SEND (surface enhanced neat desorption): Matrix-assisted laser desorption ionization in which the mat...
Definition cv.hpp:1374
MS_report_only_spectra_assigned_to_identified_proteins
report only spectra assigned to identified proteins: Flag indicating to report only the spectra assig...
Definition cv.hpp:5121
MS_no_peptide_level_threshold
no peptide-level threshold: Indicating that no peptide-level threshold was used.
Definition cv.hpp:7956
MS_SEQUEST_TIC
SEQUEST:TIC: SEQUEST total ion current.
Definition cv.hpp:4527
MS_MALDI_Synapt_G2_S_HDMS
MALDI Synapt G2-S HDMS: Waters oa-ToF based MALDI Synapt G2 MS.
Definition cv.hpp:5733
MS_SEQUEST_sort_by_MH_
SEQUEST:sort by MH+: Sort order of SEQUEST search results given by the mass of the protonated ion.
Definition cv.hpp:3633
MS_Mascot_ShowHomologousProteinsWithSubsetOfPeptides
Mascot:ShowHomologousProteinsWithSubsetOfPeptides: If true, show (sequence or spectrum) sub-set and s...
Definition cv.hpp:4374
UO_kelvin
kelvin: A thermodynamic temperature unit which is equal to the fraction 1/273.16 of the thermodynamic...
Definition cv.hpp:13839
UNIMOD_Tyr__Asp
Tyr->Asp: Tyr->Asp substitution.
Definition cv.hpp:10800
MS_mass_resolution
mass resolution: Smallest mass difference between two equal magnitude peaks so that the valley betwee...
Definition cv.hpp:294
UNIMOD_Dehydrated
Dehydrated: Dehydration.
Definition cv.hpp:9420
UNIMOD_Propionamide_2H_3_
Propionamide:2H(3): Acrylamide d3.
Definition cv.hpp:9561
MS_parameter_file
parameter file: Parameter file used to configure the acquisition of raw data on the instrument.
Definition cv.hpp:2889
UNIMOD_dHex_1_Hex_3_HexNAc_5_Sulf_1_
dHex(1)Hex(3)HexNAc(5)Sulf(1): DHex Hex(3) HexNAc(5) Sulf.
Definition cv.hpp:12609
MS_SCiLS_software
SCiLS software: SCiLS software for data acquisition and analysis.
Definition cv.hpp:7599
MS_TMT_reagent_129N
TMT reagent 129N: The name of the sample labelled with the TMT reagent 129N.
Definition cv.hpp:8721
MS_odd_electron_rule_OBSOLETE
odd-electron rule: Odd-electron ions may dissociate to form either odd or even-electron ions,...
Definition cv.hpp:1089
MS_Paragon_contrib
Paragon:contrib: The Paragon result 'Contrib'.
Definition cv.hpp:3969
MS_apex_Q
apex Q: Bruker Daltonics' apex Q: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR.
Definition cv.hpp:792
MS_scan_start_time
scan start time: The time that an analyzer started a scan, relative to the start of the MS run.
Definition cv.hpp:309
MS_SEQUEST_sort_by_P
SEQUEST:sort by P: Sort order of SEQUEST search results given by the probability.
Definition cv.hpp:3636
MS_ProteomeDiscoverer_perform_deisotoping
ProteomeDiscoverer:perform deisotoping: Defines whether a simple deisotoping shall be performed.
Definition cv.hpp:7434
MS_SpectraFilter_OBSOLETE
SpectraFilter: Applies a filter to peak spectra.
Definition cv.hpp:2964
MS_regular_expression_for_interaction_scores_derived_from_cross_linking
)).
Definition cv.hpp:8454
MS_error_on_protein_ratio
error on protein ratio: Error on protein ratio.
Definition cv.hpp:3864
UNIMOD_Dibromo
Dibromo: Dibromo.
Definition cv.hpp:10380
MS_QTRAP_4500
QTRAP 4500: SCIEX QTRAP 4500.
Definition cv.hpp:8193
MS_t_test
t-test: Perform a t-test (two groups). Specify in string value, whether paired / unpaired,...
Definition cv.hpp:6660
MS_unstable_ion_OBSOLETE
unstable ion: An ion with sufficient energy to dissociate within the ion source.
Definition cv.hpp:1710
MS_64_bit_integer
64-bit integer: Signed 64-bit little-endian integer.
Definition cv.hpp:2172
MS_Arg_C
Arg-C: Endoproteinase Arg-C.
Definition cv.hpp:4311
UNIMOD_dHex_1_Hex_3_HexA_1_HexNAc_1_Sulf_1_
dHex(1)Hex(3)HexA(1)HexNAc(1)Sulf(1): DHex Hex(3) HexA HexNAc Sulf.
Definition cv.hpp:12981
MS_higher_score_better
higher score better: Indicates that a higher score is better.
Definition cv.hpp:6771
UNIMOD_Gly__Val
Gly->Val: Gly->Val substitution.
Definition cv.hpp:10503
UNIMOD_Cys__Dha
Cys->Dha: Dehydroalanine (from Cysteine).
Definition cv.hpp:10041
MS_SCION_TQ
SCION TQ: Bruker Daltonics' SCION TQ: GC-triple quadrupole.
Definition cv.hpp:7338
MS_source_sprayer_type
source sprayer type: The source sprayer type.
Definition cv.hpp:6222
UNIMOD_Val__Arg
Val->Arg: Val->Arg substitution.
Definition cv.hpp:11910
MS_TMT_reagent_127
TMT reagent 127: The name of the sample labelled with the TMT reagent 127.
Definition cv.hpp:8304
UNIMOD_N_dimethylphosphate
N-dimethylphosphate: N-dimethylphosphate.
Definition cv.hpp:12222
MS_BioAnalyst
BioAnalyst: Applied Biosystems|MDS SCIEX software for bio-related data exploration.
Definition cv.hpp:2670
UO_gigabyte
gigabyte: An information unit which is equal to 1000000000 bytes.
Definition cv.hpp:14790
MS_ProteomeDiscoverer_Polarity_Mode_OBSOLETE
ProteomeDiscoverer:Polarity Mode: Polarity mode (positive or negative).
Definition cv.hpp:5247
UNIMOD_Label_2H_4__GG
Label:2H(4)+GG: Ubiquitination 2H4 lysine.
Definition cv.hpp:11010
UNIMOD_Hex_4_HexNAc_4_
Hex(4)HexNAc(4): Biantennary (-1 galactose).
Definition cv.hpp:9921
UNIMOD_dHex_3_Hex_2_HexNAc_2_Kdn_1_
dHex(3)Hex(2)HexNAc(2)Kdn(1): DHex(3) Hex(2) HexNAc(2) Kdn.
Definition cv.hpp:13152
UO_milliliter_per_kilogram
milliliter per kilogram: A specific volume unit which is equal to a thousandth of a liter per kilogra...
Definition cv.hpp:14391
UO_rate_unit
rate unit: A unit which represents a standard measurement occurrence of a process per unit time.
Definition cv.hpp:14637
MS_precursor_ion_detection_probability
precursor ion detection probability: Probability of detecting precursor when parent protein is presen...
Definition cv.hpp:7116
MS_TOPP_MapAlignerSpectrum
TOPP MapAlignerSpectrum: Corrects retention time distortions between maps by spectrum alignment.
Definition cv.hpp:6897
MS_glyco_TMT_quantitation_analysis
glyco-TMT quantitation analysis: Quantitation analysis using the Thermo Fisher carbonyl-reactive glyc...
Definition cv.hpp:8691
UNIMOD_dHex_1_Hex_2_HexA_1_
dHex(1)Hex(2)HexA(1): DHex Hex(2) HexA.
Definition cv.hpp:12423
MS_ProteomeDiscoverer_SEQUEST_FT_High_Confidence_XCorr_Charge1
ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge1: FT high confidence XCorr parameter for c...
Definition cv.hpp:5550
UO_femtoliter
femtoliter: A volume unit which is equal to 10^[-15] L.
Definition cv.hpp:14115
MS_IsobariQ
IsobariQ: A quantitative software package designed for analysis of IPTL, TMT and iTRAQ data.
Definition cv.hpp:7077
UNIMOD_Hex_4_HexNAc_3_NeuAc_1_
Hex(4)HexNAc(3)NeuAc(1): Hex(4) HexNAc(3) NeuAc —OR— Hex(3) HexNAc(4) Kdn.
Definition cv.hpp:13362
MS_TraML_format
TraML format: The TraML format for transitions in SRM from the PSI. File extension '....
Definition cv.hpp:7683
UNIMOD_dHex_2_Hex_2_HexNAc_2_
dHex(2)Hex(2)HexNAc(2): DHex(2) Hex(2) HexNAc(2).
Definition cv.hpp:13323
UNIMOD_Acetylhypusine
Acetylhypusine: Acetylhypusine.
Definition cv.hpp:11385
MS_normalized_collision_energy
normalized collision energy: Instrument setting, expressed in percent, for adjusting collisional ener...
Definition cv.hpp:780
MS_HiRes_ESI
HiRes ESI: IonSpec HiResESI MS.
Definition cv.hpp:852
MS_absorption_spectrum
absorption spectrum: A plot of the relative intensity of electromagnetic radiation absorbed by atoms ...
Definition cv.hpp:3114
UNIMOD_Hex_4_HexNAc_4_NeuAc_1_Sulf_3_
Hex(4)HexNAc(4)NeuAc(1)Sulf(3): Hex(4) HexNAc(4) NeuAc Sulf(3).
Definition cv.hpp:13320
UNIMOD_Val__Lys
Val->Lys: Val->Lys substitution.
Definition cv.hpp:11898
UNIMOD_dHex_2_Hex_4_HexNAc_5_
dHex(2)Hex(4)HexNAc(5): DHex(2) Hex(4) HexNAc(5).
Definition cv.hpp:13398
UNIMOD_Dipyridyl
Dipyridyl: Cys modified with dipy ligand.
Definition cv.hpp:12060
UNIMOD_Tyr__Met
Tyr->Met: Tyr->Met substitution.
Definition cv.hpp:11976
MS_Mascot_score
Mascot:score: The Mascot result 'Score'.
Definition cv.hpp:3972
UNIMOD_Arg2PG
Arg2PG: Adduct of phenylglyoxal with Arg.
Definition cv.hpp:11001
UNIMOD_His__Pro
His->Pro: His->Pro substitution.
Definition cv.hpp:10515
PEFF_GName
GName: Gene name.
Definition cv.hpp:189
MS_SEQUEST_sprank
SEQUEST:sprank: The SEQUEST result 'SpRank'.
Definition cv.hpp:7194
UNIMOD_Delta_H__4_O_3_
Delta:H(-4)O(3): Tryptophan oxidation to hydroxy-bis-tryptophandione.
Definition cv.hpp:13614
MS_average_product_ion_intensity
average product ion intensity: Average value of product ion intensity in a collection of identified s...
Definition cv.hpp:7122
MS_peptide_exon_count
peptide exon count: The number of exons to which the peptide has been mapped.
Definition cv.hpp:8379
MS_sample_concentration
sample concentration: Concentration of sample in picomol/ul, femtomol/ul or attomol/ul solution used.
Definition cv.hpp:279
MS_LCQ_Deca
LCQ Deca: ThermoFinnigan LCQ Deca.
Definition cv.hpp:2271
UNIMOD_GG
GG: Ubiquitinylation residue.
Definition cv.hpp:9600
MS_6110_Quadrupole_LC_MS
6110 Quadrupole LC/MS: The 6110 Quadrupole LC/MS system is a Agilent liquid chromatography instrument...
Definition cv.hpp:2001
MS_frag__iTRAQ_8plex_reporter_ion
frag: iTRAQ 8plex reporter ion: Standard reporter ion for iTRAQ 8Plex. The value slot holds the integ...
Definition cv.hpp:8466
MS_frag__a_ion
frag: a ion: Fragmentation information, type of product: a ion.
Definition cv.hpp:4119
UO_nautical_mile
nautical mile: A maritime length unit which is equal to 6,080 feet, 10 cables, or 1,...
Definition cv.hpp:14859
MS_Mascot_ShowHomologousProteinsWithSamePeptides
Mascot:ShowHomologousProteinsWithSamePeptides: If true, show (sequence or spectrum) same-set proteins...
Definition cv.hpp:4371
MS_MaxQuant
MaxQuant: MaxQuant is a quantitative proteomics software package designed for analyzing large mass sp...
Definition cv.hpp:5151
MS_Comet_deltacnstar
Comet:deltacnstar: The Comet result 'DeltaCnStar'.
Definition cv.hpp:7209
MS_inductive_detector
inductive detector: Inductive detector.
Definition cv.hpp:2538
UO_enzyme_unit
enzyme unit: A catalytic unit activity which is equal to the amount of the enzyme that catalyzes the ...
Definition cv.hpp:14340
MS_ProteomeDiscoverer_Static_Modification
ProteomeDiscoverer:Static Modification: Static Modification to all occurrences of a named amino acid.
Definition cv.hpp:5349
MS_full_width_at_half_maximum
full width at half-maximum: A measure of resolution represented as width of the peak at half peak hei...
Definition cv.hpp:570
MS_search_input_details
search input details: Details describing the search input.
Definition cv.hpp:4173
MS_GD_MS
GD-MS (glow discharge ionization): The formation of ions in the gas phase and from solid samples at t...
Definition cv.hpp:1251
UO_pound
pound: An imperial mass unit which is equivalent to 453.592,37 grams.
Definition cv.hpp:14895
MS_GPS_Explorer
GPS Explorer: SCIEX or Applied Biosystems software for data acquisition and analysis.
Definition cv.hpp:2652
MS_param__b_ion
param: b ion: Parameter information, type of product: b ion with charge on the N-terminal side.
Definition cv.hpp:3813
MS_HiRes_MALDI
HiRes MALDI: IonSpec HiResMALDI MS.
Definition cv.hpp:855
UNIMOD_Asp__Ala
Asp->Ala: Asp->Ala substitution.
Definition cv.hpp:10437
MS_peptide_ratio
peptide ratio: Peptide ratio.
Definition cv.hpp:3855
MS_atmospheric_pressure_chemical_ionization
atmospheric pressure chemical ionization: Chemical ionization that takes place at atmospheric pressur...
Definition cv.hpp:489
MS_charge_remote_fragmentation_OBSOLETE
charge-remote fragmentation: A fragmentation of an even-electron ion in which the cleaved bond is not...
Definition cv.hpp:1152
MS_impact_II
impact II: Bruker Daltonics' impact II.
Definition cv.hpp:8457
MS_Glu_C
Glu-C (glutamyl endopeptidase): Enzyme glutamyl endopeptidase (EC 3.4.21.19).
Definition cv.hpp:6171
UNIMOD_O_Isopropylmethylphosphonate
O-Isopropylmethylphosphonate: O-Isopropylmethylphosphonylation.
Definition cv.hpp:10854
MS_percent_collision_energy_ramp_start
percent collision energy ramp start: Collision energy at the start of the collision energy ramp in pe...
Definition cv.hpp:7101
UO_picomole
picomole: A substance unit equal to 10^[-12] mol.
Definition cv.hpp:13929
UNIMOD_Glu__pyro_Glu_Methyl
Glu->pyro-Glu+Methyl: Pyro-Glu from E + Methylation.
Definition cv.hpp:13425
UNIMOD_Hex_1_HexNAc_1_Phos_1_
Hex(1)HexNAc(1)Phos(1): Hex HexNAc Phos.
Definition cv.hpp:12372
MS_Trypsin_R
Trypsin/R (Arg-C): Endoproteinase Arg-C.
Definition cv.hpp:4314
MS_TopMG_thread_number
TopMG:thread number: Number of threads used in TopMG.
Definition cv.hpp:9255
UNIMOD_PEO_Iodoacetyl_LC_Biotin
PEO-Iodoacetyl-LC-Biotin: Biotinyl-iodoacetamidyl-3,6-dioxaoctanediamine.
Definition cv.hpp:9414
UO_ug_disk
ug/disk: A unit which is equal to one microgram per disk, where a disk is some physical surface/conta...
Definition cv.hpp:14628
MS_fluorescence_detector
fluorescence detector: A detector using a fluorescent signal after excitation with light.
Definition cv.hpp:7374
MS_Proteome_Discoverer
Proteome Discoverer: Thermo Scientific software for data analysis of peptides and proteins.
Definition cv.hpp:2622
UNIMOD_ICAT_H
ICAT-H: N-iodoacetyl, p-chlorobenzyl-12C6-glucamine.
Definition cv.hpp:9606
MS_protein_level_result_list_statistic
protein-level result list statistic: A statistical metric of an entire protein list.
Definition cv.hpp:8571
MS_secondary_isotope_peak
secondary isotope peak: Fragment ion is an isotopic peak other than that monoisotopic peak....
Definition cv.hpp:8547
UO_megabyte
megabyte: An information unit which is equal to 1000 kB.
Definition cv.hpp:14502
MS_PASSEL_transition_group_browser_URI
PASSEL transition group browser URI: URI to retrieve transition group data for a PASSEL (PeptideAtlas...
Definition cv.hpp:6537
UNIMOD_Tyr__Cys
Tyr->Cys: Tyr->Cys substitution.
Definition cv.hpp:10803
MS_time_of_flight
time-of-flight: Instrument that separates ions by m/z in a field-free region after acceleration to a ...
Definition cv.hpp:561
MS_cleavage_agent_details
cleavage agent details: Details of cleavage agent (enzyme).
Definition cv.hpp:3618
UO_deca
deca: A prefix in the metric system denoting a factor of ten.
Definition cv.hpp:14682
MS_local_FDR
local FDR: Result of quality estimation: the local FDR at the current position of a sorted list.
Definition cv.hpp:4176
UNIMOD_Gln__His
Gln->His: Gln->His substitution.
Definition cv.hpp:10653
MS_deisotoping
deisotoping: The removal of isotope peaks to represent the fragment ion as one data point and is comm...
Definition cv.hpp:363
MS_Q_Tof_Ultima
Q-Tof Ultima: Waters oa-ToF based Q-Tof Ultima.
Definition cv.hpp:933
UNIMOD_dHex_2_Hex_2_HexA_1_HexNAc_1_
dHex(2)Hex(2)HexA(1)HexNAc(1): DHex(2) Hex(2) HexA HexNAc.
Definition cv.hpp:12927
UNIMOD_NA_OA_NO2
NA-OA-NO2: Nitroalkylation by Nitro Oleic Acid.
Definition cv.hpp:10812
MS_MS2_tag_based_feature_level_quantitation
MS2 tag-based feature level quantitation: MS2 tag-based feature level quantitation.
Definition cv.hpp:6516
MS_pulse_duration
pulse duration: Describes how long the laser beam was emitted from the laser device.
Definition cv.hpp:3237
UO_volt_hour
volt-hour: A magnetic flux unit which is equal to 3600 Wb.
Definition cv.hpp:14484
UNIMOD_VFQQQTGG
VFQQQTGG: SUMOylation by SUMO-2/3 (formic acid cleavage).
Definition cv.hpp:11136
MS_frag__x_ion
frag: x ion: Fragmentation information, type of product: x ion.
Definition cv.hpp:4116
UO_kilogram_meter_per_second
kilogram meter per second: A momentum unit which is equal to the momentum of a one kilogram mass obje...
Definition cv.hpp:14076
MS_SEQUEST_SelectDefault
SEQUEST:SelectDefault:
Definition cv.hpp:3891
MS_ACQUITY_UPLC
ACQUITY UPLC: Waters LC-system ACQUITY UPLC.
Definition cv.hpp:5697
UO_cubic_meter
cubic meter: A volume unit which is equal to the volume of a cube with edges one meter in length....
Definition cv.hpp:14091
MS_decoy_DB_derived_from_OBSOLETE
decoy DB derived from: The name of the database, the search database was derived from.
Definition cv.hpp:4254
MS_Progenesis_QI
Progenesis QI: Metabolomics analysis software for LC-MS data from Nonlinear Dynamics.
Definition cv.hpp:9060
UNIMOD_dHex_2_Hex_4_HexNAc_2_
dHex(2)Hex(4)HexNAc(2): DHex(2) Hex(4) HexNAc(2).
Definition cv.hpp:13353
UO_force_unit
force unit: A unit which is a standard measure of the force is applied when a mass is accelerated.
Definition cv.hpp:14124
UNIMOD_FormylMet
FormylMet: Addition of N-formyl met.
Definition cv.hpp:9570
MS_LIQUID
LIQUID: An-open source software for identifying lipids in LC-MS/MS-based lipidomics data.
Definition cv.hpp:9348
UNIMOD_Pro__Pyrrolidone
Pro->Pyrrolidone: Pyrrolidone from Proline.
Definition cv.hpp:10044
MS_includes_supersede_excludes
includes supersede excludes: A priority setting specifying that included targets have priority over t...
Definition cv.hpp:3468
MS_protein_name
protein name: A long name describing the function of the protein.
Definition cv.hpp:3360
MS_Xevo_G2_S_Tof
Xevo G2-S Tof: Waters oa-ToF based Xevo G2-S Tof.
Definition cv.hpp:7272
UNIMOD_EDEDTIDVFQQQTGG
EDEDTIDVFQQQTGG: Sumoylation by SUMO-2/3 after Cyanogen bromide (CNBr) cleavage.
Definition cv.hpp:12324
MS_idXML
idXML: OpenMS intermediate identification format.
Definition cv.hpp:8892
MS_BioTOF_II
BioTOF II: Bruker Daltonics' BioTOF II: ESI TOF.
Definition cv.hpp:819
UNIMOD_dHex_2_Hex_3_HexNAc_6_
dHex(2)Hex(3)HexNAc(6): DHex(2) Hex(3) HexNAc(6).
Definition cv.hpp:12771
UO_centi
centi: A prefix in the metric system denoting a factor of one hundred.
Definition cv.hpp:14691
MS_modification_localization_scoring
modification localization scoring: Modification localization scoring performed.
Definition cv.hpp:7923
UNIMOD_Cys__Val
Cys->Val: Cys->Val substitution.
Definition cv.hpp:11454
MS_MS1_label_based_proteingroup_level_quantitation
MS1 label-based proteingroup level quantitation: MS1 label-based proteingroup level quantitation.
Definition cv.hpp:6444
UNIMOD_HexNAc_3_Sulf_1_
HexNAc(3)Sulf(1): HexNAc(3) Sulf.
Definition cv.hpp:12780
UO_unit_per_volume_unit
unit per volume unit: A concentration unit which is a standard measure of the number of units,...
Definition cv.hpp:14328
MS_fragment_ion_OBSOLETE
fragment ion: A product ion that results from the dissociation of a precursor ion.
Definition cv.hpp:1665
UNIMOD_Deamidated
Deamidated: Deamidation.
Definition cv.hpp:9390
MS_database_IPI_human
database IPI_human: International Protein Index database for Homo sapiens sequences.
Definition cv.hpp:3885
UNIMOD_Ser__Ala
Ser->Ala: Ser->Ala substitution.
Definition cv.hpp:10698
MS_TOPP_NoiseFilterSGolay
TOPP NoiseFilterSGolay: Removes noise from profile spectra by using a Savitzky-Golay smoothing.
Definition cv.hpp:6846
MS_paul_ion_trap_OBSOLETE
paul ion trap: A device that permits the trapping of ions by means of an alternating current voltage....
Definition cv.hpp:1452
MS_Paragon__background_correction
Paragon: background correction: The Paragon method setting that controls whether the 'Background Corr...
Definition cv.hpp:7737
UNIMOD_Dimethyl_2H_6_
Dimethyl:2H(6): Dimethyl-Medium.
Definition cv.hpp:12093
MS_DB_composition_only_decoy
DB composition only decoy: Decoy database composition: database contains only decoy entries.
Definition cv.hpp:4758
MS_ion_trap
ion trap: A device for spatially confining ions using electric and magnetic fields alone or in combin...
Definition cv.hpp:1278
UNIMOD_Hex_3_HexNAc_4_NeuAc_1_
Hex(3)HexNAc(4)NeuAc(1): Hex(3) HexNAc(4) NeuAc —OR— Hex(2) HexNAc(4) dHex NeuGc.
Definition cv.hpp:12549
MS_TopPIC_N_term_form
TopPIC:N-term form: N-terminal forms of proteins allowed in TopPIC searching.
Definition cv.hpp:9165
MS_mass_number_OBSOLETE
mass number: The sum of the protons and neutrons in an atom, molecule or ion.
Definition cv.hpp:1062
UNIMOD_Label_13C_6__Dimethyl
Label:13C(6)+Dimethyl: Dimethyl 13C(6) Silac label.
Definition cv.hpp:11253
MS_ProteomeDiscoverer_SEQUEST_Std_Medium_Confidence_XCorr_Charge2
ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge2: Standard medium confidence XCorr para...
Definition cv.hpp:5541
MS_SRM_transition_ID
SRM transition ID: Identifier for an SRM transition in an external document describing additional inf...
Definition cv.hpp:5901
UNIMOD_HexNAc_2_NeuGc_1_
HexNAc(2)NeuGc(1): HexNAc(2) NeuGc.
Definition cv.hpp:12801
UNIMOD_Hex_2_HexNAc_3_NeuAc_2_
Hex(2)HexNAc(3)NeuAc(2): Hex(2) HexNAc(3) NeuAc(2).
Definition cv.hpp:13203
MS_PTM_localization_PSM_level_statistic
PTM localization PSM-level statistic: Statistic to convey the confidence of the localization of an am...
Definition cv.hpp:6327
MS_DESI
DESI (desorption electrospray ionization): Combination of electrospray and desorption ionization meth...
Definition cv.hpp:6477
MS_PAnalyzer_conclusive_protein
PAnalyzer:conclusive protein: A protein identified by at least one unique (distinct,...
Definition cv.hpp:7086
MS_small_molecule_list_attribute
small molecule list attribute: Attribute describing a small molecule list.
Definition cv.hpp:6798
MS_ProteomeDiscoverer_Non_Fragment_Filter_Maximum_Neutral_Loss_Mass
ProteomeDiscoverer:Non-Fragment Filter:Maximum Neutral Loss Mass: Maximum allowed mass of a neutral l...
Definition cv.hpp:5283
UNIMOD_Delta_H_6_C_6_O_1_
Delta:H(6)C(6)O(1): Acrolein addition +94.
Definition cv.hpp:9768
MS_TopMG
TopMG: A mass graph-based approach for the identification of modified proteoforms using top-down tand...
Definition cv.hpp:9132
MS_MetaMorpheus_score
MetaMorpheus:score: MetaMorpheus score for PSMs.
Definition cv.hpp:8904
UNIMOD_Delta_H_2_C_3_O_1_
Delta:H(2)C(3)O(1): MDA adduct +54.
Definition cv.hpp:9942
UNIMOD_dHex_2_Hex_3_HexA_1_HexNAc_2_Sulf_1_
dHex(2)Hex(3)HexA(1)HexNAc(2)Sulf(1): DHex(2) Hex(3) HexA HexNAc(2) Sulf.
Definition cv.hpp:13164
UNIMOD_Arg__Gly
Arg->Gly: Arg->Gly substitution.
Definition cv.hpp:10692
MS_Sonar_Score
Sonar:Score: The Sonar score.
Definition cv.hpp:4911
MS_jPOST_dataset_identifier
jPOST dataset identifier: Dataset identifier issued by the jPOST repository. A dataset can refer to e...
Definition cv.hpp:8352
UNIMOD_Hex_8_Phos_3_
Hex(8)Phos(3): Hex(8) Phos(3).
Definition cv.hpp:13221
MS_conversion_dynode_electron_multiplier
conversion dynode electron multiplier: A surface that is held at high potential so that ions striking...
Definition cv.hpp:645
MS_TSQ_Vantage
TSQ Vantage: TSQ Vantage.
Definition cv.hpp:4935
MS_ProteomeDiscoverer_SEQUEST_Std_Medium_Confidence_XCorr_Charge4
ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge4: Standard medium confidence XCorr para...
Definition cv.hpp:5547
UO_cells_per_well
cells per well: A unit of cell concentration which is equal to 1 cell in a well or discrete container...
Definition cv.hpp:14748
UNIMOD_Unknown_306
Unknown:306: Unidentified modification of 306.0952 found in open search.
Definition cv.hpp:13776
MS_Original_data
Original data: One dataset is not a reanalysis of previously published data.
Definition cv.hpp:9027
UNIMOD_Gly__Ser
Gly->Ser: Gly->Ser substitution.
Definition cv.hpp:10494
MS_exact_mass_OBSOLETE
exact mass: The calculated mass of an ion or molecule containing a single isotope of each atom.
Definition cv.hpp:1029
UNIMOD_Xlink_EGS_115_
Xlink:EGS[115]: Cleavage product of EGS protein crosslinks by hydroylamine treatment.
Definition cv.hpp:11349
UO_year
year: A time unit which is equal to 12 months which in science is taken to be equal to 365....
Definition cv.hpp:13911
UO_mile
mile: A length unit which is equal to 1,609.344 metres, or 8 furlongs.
Definition cv.hpp:14844
UNIMOD_Brij35
Brij35: Brij 35 synthetic polymer terminus.
Definition cv.hpp:13458
MS_MS1_label_based_analysis
MS1 label-based analysis: MS1 label-based analysis.
Definition cv.hpp:6498
MS_scan_number_s__OBSOLETE
scan number(s): OBSOLETE: use spectrumID attribute of SpectrumIdentificationResult....
Definition cv.hpp:3804
UO_microvolt
microvolt: An electric potential difference unit which is equal to one millionth of a volt or 10^[-6]...
Definition cv.hpp:14544
UNIMOD_Xlink_DSSO_86_
Xlink:DSSO[86]: Thiol fragment of DSSO crosslinker.
Definition cv.hpp:13521
UO_millimolar
millimolar: A unit of molarity which is equal to one thousandth of a molar or 10^[-3] M.
Definition cv.hpp:13992
UNIMOD_Label_13C_6_15N_2__Dimethyl
Label:13C(6)15N(2)+Dimethyl: Dimethyl 13C(6)15N(2) Silac label.
Definition cv.hpp:11256
MS_ion
ion: An atomic or molecular species having a net positive or negative electric charge.
Definition cv.hpp:8838
MS_DiLeu_reagent_117
DiLeu reagent 117: The name of the sample labelled with the DiLeu reagent 117.
Definition cv.hpp:8763
MS_nanospray_inlet
nanospray inlet: Nanospray Inlet.
Definition cv.hpp:2055
UO_substance_unit
substance unit: A unit which is a standardised quantity of an element or compound with uniform compos...
Definition cv.hpp:13821
MS_data_transformation
data transformation: Terms used to describe types of data processing.
Definition cv.hpp:1944
MS_special_processing
special processing: Details describing a special processing.
Definition cv.hpp:7917
UO_parts_per_million
parts per million: A dimensionless concentration notation which denotes the amount of a given substan...
Definition cv.hpp:14304
MS_LCMS_2010EV
LCMS-2010EV: Shimadzu Scientific Instruments LCMS-2010EV MS.
Definition cv.hpp:2475
MS_frag__d_ion
frag: d ion: Fragmentation information, type of product: d ion.
Definition cv.hpp:4140
UNIMOD_Hex_7_HexNAc_2_Phos_2_
Hex(7)HexNAc(2)Phos(2): Hex(7) HexNAc(2) Phos(2).
Definition cv.hpp:12591
MS_MSQuant
MSQuant: MSQuant software.
Definition cv.hpp:6360
MS_spectral_count_peptide_level_quantitation
spectral count peptide level quantitation: Spectral count peptide level quantitation.
Definition cv.hpp:6489
MS_nth_generation_product_ion_scan_OBSOLETE
nth generation product ion scan: The specific scan functions or processes that record the appropriate...
Definition cv.hpp:1584
MS_mass_spectrometer_file_format
mass spectrometer file format: The format of the file being used. This could be a instrument or vendo...
Definition cv.hpp:2289
UNIMOD_Propyl_2H_6_
Propyl:2H(6): Propyl:2H(6).
Definition cv.hpp:12132
MS_3100
3100: Waters quadrupole based 3100.
Definition cv.hpp:5772
UNIMOD_Arg__Ser
Arg->Ser: Arg->Ser substitution.
Definition cv.hpp:10662
MS_external_offset
external offset: The position in the external data where the array begins.
Definition cv.hpp:8949
MS_product_ion_series_ordinal
product ion series ordinal: The ordinal of the fragment within a specified ion series....
Definition cv.hpp:3414
MS_SEQUEST_sort_by_Sp
SEQUEST:sort by Sp: Sort order of SEQUEST search results by the Sp score.
Definition cv.hpp:3678
MS_NRMS
NRMS (neutralization reionization mass spectrometry): With this technique, m/z selected ions form neu...
Definition cv.hpp:1332
MS_taxonomy__scientific_name
taxonomy: scientific name: This term is used if a scientific name is specified, e....
Definition cv.hpp:4803
UNIMOD_Thr__Asn
Thr->Asn: Thr->Asn substitution.
Definition cv.hpp:10734
MS_ProteinExtractor_Methodname
ProteinExtractor:Methodname: Name of the used method in the ProteinExtractor algorithm.
Definition cv.hpp:4671
UO_plaque_forming_unit_per_volume
plaque forming unit per volume: A concentration unit which a measure of plague forming units in a giv...
Definition cv.hpp:14439
MS_SORI
SORI (sustained off-resonance irradiation): A technique associated with Fourier transform ion cyclotr...
Definition cv.hpp:1392
MS_LIFT
LIFT: A Bruker's proprietary technique where molecular ions are initially accelerated at lower energy...
Definition cv.hpp:6432
UNIMOD_Delta_H_8_C_6_O_1_
Delta:H(8)C(6)O(1): Reduced acrolein addition +96.
Definition cv.hpp:12141
MS_Progenesis_manual_alignment
Progenesis manual alignment: RT alignment of Progenesis software using automatic and manual vectors.
Definition cv.hpp:6012
MS_protein_group_level_quantification_datatype
protein group-level quantification datatype: The data type of the value reported in a QuantLayer for ...
Definition cv.hpp:8637
UNIMOD_Biotin_Thermo_21328
Biotin:Thermo-21328: EZ-Link Sulfo-NHS-SS-Biotin.
Definition cv.hpp:13470
MS_MS2_format
MS2 format: MS2 file format for MS2 spectral data.
Definition cv.hpp:4794
UNIMOD_Retinylidene
Retinylidene: Retinal.
Definition cv.hpp:10071
MS_Data_Explorer
Data Explorer: Applied Biosystems software for data acquisition and analysis.
Definition cv.hpp:2214
UNIMOD_NP40
NP40: NP-40 synthetic polymer terminus.
Definition cv.hpp:13446
UNIMOD_Xlink_DTSSP_88_
Xlink:DTSSP[88]: Cleaved and reduced DSP/DTSSP crosslinker.
Definition cv.hpp:9612
UO_Roentgen_equivalent_man
Roentgen equivalent man: A dose equivalent unit which when multiplied by hundred is equal to one siev...
Definition cv.hpp:14220
UO_magnetic_flux_density_unit
magnetic flux density unit: A unit which is a standard measure of the strength of a magnetic field.
Definition cv.hpp:14478
MS_Paragon__digestion
Paragon: digestion: The Paragon method setting indicating the actual digestion agent - unlike other s...
Definition cv.hpp:7758
UNIMOD_pyrophospho
pyrophospho: Pyrophosphorylation of Ser/Thr.
Definition cv.hpp:11079
UNIMOD_ESP
ESP: ESP-Tag light d0.
Definition cv.hpp:9543
MS_TagRecon_mzFidelity
TagRecon:mzFidelity (MyriMatch:mzFidelity): The negative natural log probability that predicted peaks...
Definition cv.hpp:5184
MS_MaxQuant_peptide_counts__razor_unique_
MaxQuant:peptide counts (razor+unique): The data type peptide counts (razor+unique) produced by MaxQu...
Definition cv.hpp:6111
MS_UIMF_nativeID_format
UIMF nativeID format: Native format defined by frame=xsd:nonNegativeInteger scan=xsd:nonNegativeInteg...
Definition cv.hpp:8049
UNIMOD_dHex_4_Hex_2_HexNAc_3_
dHex(4)Hex(2)HexNAc(3): DHex(4) Hex(2) HexNAc(3).
Definition cv.hpp:13209
MS_accurate_mass_OBSOLETE
accurate mass: An experimentally determined mass that is can be to determine a unique elemental formu...
Definition cv.hpp:996
MS_peptide_sequence_level_identification_attribute
peptide sequence-level identification attribute: Peptide level information.
Definition cv.hpp:3774
MS_MS_MS_in_Time_OBSOLETE
MS/MS in Time: A tandem mass spectrometry method in which product ion spectra are recorded in a singl...
Definition cv.hpp:1572
MS_probability_for_proteins
probability for proteins: Probability that a specific protein sequence has been correctly identified ...
Definition cv.hpp:7551
PEFF_Processed
Processed: Processed Molecule.
Definition cv.hpp:204
UNIMOD_Cys__Asp
Cys->Asp: Cys->Asp substitution.
Definition cv.hpp:11424
UNIMOD_Asp__Cys
Asp->Cys: Asp->Cys substitution.
Definition cv.hpp:11457
UNIMOD_Trp__Thr
Trp->Thr: Trp->Thr substitution.
Definition cv.hpp:11955
UNIMOD_dHex_2_Hex_2_HexA_1_
dHex(2)Hex(2)HexA(1): DHex(2) Hex(2) HexA.
Definition cv.hpp:12834
UO_milliliter_per_liter
milliliter per liter: A volume per unit volume unit which is equal to one millionth of a liter of sol...
Definition cv.hpp:14418
UNIMOD_Hex_5_HexNAc_4_
Hex(5)HexNAc(4): Biantennary.
Definition cv.hpp:9924
MS_ProteomeDiscoverer_Spectrum_Grouper_Precursor_Mass_Criterion
ProteomeDiscoverer:Spectrum Grouper:Precursor Mass Criterion: Groups spectra measured within the give...
Definition cv.hpp:5310
MS_TSQ_9000
TSQ 9000: Thermo Scientific TSQ 9000 Triple Quadrupole MS.
Definition cv.hpp:9051
MS_autoflex_II_TOF_TOF
autoflex II TOF/TOF: Bruker Daltonics' autoflex II TOF/TOF: MALDI TOF.
Definition cv.hpp:5058
UNIMOD_TMT6plex
TMT6plex: Sixplex Tandem Mass Tag®.
Definition cv.hpp:10872
MS_Mascot_SigThreshold
Mascot:SigThreshold: Significance threshold below which the p-value of a peptide match must lie to be...
Definition cv.hpp:4359
UNIMOD_Xle__Gln
Xle->Gln: Leu/Ile->Gln substitution.
Definition cv.hpp:10578
UO_radian_per_second_per_second
radian per second per second: An angular unit acceleration which is equal to the angular acceleration...
Definition cv.hpp:14037
MS_Amanda
Amanda: Amanda scoring system for PSM identification.
Definition cv.hpp:7458
MS_sequence_sub_set_protein
sequence sub-set protein: A protein with a sub-set of the peptide sequence matches for another protei...
Definition cv.hpp:5202
UNIMOD_Hex_5_Phos_3_
Hex(5)Phos(3): Hex(5) Phos(3).
Definition cv.hpp:12957
UO_nanoliter
nanoliter: A volume unit which is equal to one thousandth of one millionth of a liter or 10^[-9] L.
Definition cv.hpp:14109
MS_focus_diameter_x
focus diameter x: Describes the diameter of the laser beam in x direction.
Definition cv.hpp:3228
MS_Paragon__channel_to_use_as_denominator_in_ratios
Paragon: channel to use as denominator in ratios: The Paragon method setting that controls which labe...
Definition cv.hpp:7743
MS_method_file_format
method file format: Attribute describing a method file format.
Definition cv.hpp:6831
MS_aminoxyTMT_quantitation_analysis
aminoxyTMT quantitation analysis: Quantitation analysis using the Thermo Fisher carbonyl-reactive ami...
Definition cv.hpp:8694
MS_Bruker_U2_nativeID_format
Bruker U2 nativeID format: Native format defined by declaration=xsd:nonNegativeInteger collection=xsd...
Definition cv.hpp:3168
UNIMOD_Hex_3_HexNAc_3_
Hex(3)HexNAc(3): Hex(3) HexNAc(3).
Definition cv.hpp:13332
MS_SEQUEST_SQT_format
SEQUEST SQT format: Source file for this mzIdentML was in SEQUEST SQT format.
Definition cv.hpp:5088
MS_multiple_stage_mass_spectrometry_OBSOLETE
multiple stage mass spectrometry: Multiple stages of precursor ion m/z selection followed by product ...
Definition cv.hpp:1317
MS_reporter_ion_raw_value
reporter ion raw value: Intensity (or area) of MS2 reporter ion (e.g. iTraq).
Definition cv.hpp:5982
UNIMOD_dHex_2_Hex_3_HexNAc_3_Pent_2_
dHex(2)Hex(3)HexNAc(3)Pent(2): DHex(2) Hex(3) HexNAc(3) Pent(2).
Definition cv.hpp:12567
MS_GenoTools
GenoTools: Bruker GenoTools software.
Definition cv.hpp:2841
MS_ProteomeDiscoverer_SEQUEST_Weight_of_v_Ions
ProteomeDiscoverer:SEQUEST:Weight of v Ions: Uses c ions for spectrum matching with this relative fac...
Definition cv.hpp:5490
MS_Phenyx_AC
Phenyx:AC: The primary sequence database identifier of a protein in Phenyx.
Definition cv.hpp:4572
MS_MSFit_Mowse_score
MSFit:Mowse score: The MSFit Mowse score.
Definition cv.hpp:4908
MS_TSQ_Endura
TSQ Endura: Thermo Scientific TSQ Endura MS.
Definition cv.hpp:7707
UNIMOD_unimod_root_node
unimod root node: The root node of the unimod modifications ontology.
Definition cv.hpp:9369
MS_TOPP_OpenSwathAnalyzer
TOPP OpenSwathAnalyzer: Picks peaks and finds features in an SRM experiment.
Definition cv.hpp:7041
MS_protein_group_level_q_value
protein group-level q-value: Estimation of the q-value for protein groups.
Definition cv.hpp:7569
MS_TopPIC_MIScore_threshold
TopPIC:MIScore threshold: TopPIC:MIScore threshold.
Definition cv.hpp:9222
UNIMOD_MicrocinC7
MicrocinC7: (3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5-adenosine.
Definition cv.hpp:10215
MS_ProteomeDiscoverer_Non_Fragment_Filter_Remove_Neutral_Loss_Peaks
ProteomeDiscoverer:Non-Fragment Filter:Remove Neutral Loss Peaks: Determines whether neutral loss pea...
Definition cv.hpp:5289
MS_area_peak_picking
area peak picking: Spectral peak processing conducted on the acquired data to convert profile data to...
Definition cv.hpp:3090
UNIMOD_Hex_1_HexNAc_1_Sulf_1_
Hex(1)HexNAc(1)Sulf(1): Hex HexNAc Sulf.
Definition cv.hpp:12375
UNIMOD_Label_13C_6_15N_2__GG
Label:13C(6)15N(2)+GG: 13C(6) 15N(2) Lysine glygly.
Definition cv.hpp:11025
UNIMOD_Hex_6_HexNAc_1_
Hex(6)HexNAc(1): Hex(6) HexNAc.
Definition cv.hpp:13683
UNIMOD_Guanidinyl
Guanidinyl: Guanidination.
Definition cv.hpp:9498
UNIMOD_Met__Asn
Met->Asn: Met->Asn substitution.
Definition cv.hpp:11700
UNIMOD_Gln__Trp
Gln->Trp: Gln->Trp substitution.
Definition cv.hpp:11814
UO_cell_concentration_unit
cell concentration unit: A concentration unit which denotes the average cell number in a given volume...
Definition cv.hpp:14397
MS_ProteomeDiscoverer_MS_Order_OBSOLETE
ProteomeDiscoverer:MS Order: Level of the mass spectrum (MS2 ... MS10).
Definition cv.hpp:5244
MS_principal_ion_OBSOLETE
principal ion: Most abundant ion of an isotope cluster, such as the 11B79Br2 81Br+ ion of m/z 250 of ...
Definition cv.hpp:1692
MS_Shimadzu_Biotech_database_entity
Shimadzu Biotech database entity: Shimadzu Biotech format.
Definition cv.hpp:3498
UNIMOD_Trp__Arg
Trp->Arg: Trp->Arg substitution.
Definition cv.hpp:10779
MS_search_engine_specific_input_metadata
search engine specific input metadata: Search engine specific metadata that are not user-controlled s...
Definition cv.hpp:7746
UO_pixels_per_millimeter
pixels per millimeter: A spatial resolution unit which is a standard measure of the number of pixels ...
Definition cv.hpp:14526
UNIMOD_monomethylphosphothione
monomethylphosphothione: O-methylphosphothione.
Definition cv.hpp:13788
MS_DELTA_plusAdvantage
DELTA plusAdvantage: ThermoFinnigan DELTA plusAdvantage MS.
Definition cv.hpp:825
MS_MS_Numpress_linear_prediction_compression_followed_by_zlib_compression
MS-Numpress linear prediction compression followed by zlib compression: Compression using MS-Numpress...
Definition cv.hpp:8658
MS_TOPP_MapAlignerPoseClustering
TOPP MapAlignerPoseClustering: Corrects retention time distortions between maps using a pose clusteri...
Definition cv.hpp:6894
UNIMOD_Hex_1_HexA_1_HexNAc_2_
Hex(1)HexA(1)HexNAc(2): Hex HexA HexNAc(2).
Definition cv.hpp:12810
MS_two_dimensional_gas_chromatography_with_fixed_modulation_time
two-dimensional gas chromatography with fixed modulation time: Two-dimensional gas chromatography whe...
Definition cv.hpp:6705
MS_iProX_dataset_URI
iProX dataset URI: URI that allows the access to one dataset in the iProX repository....
Definition cv.hpp:8934
UNIMOD_Bromo
Bromo: Bromination.
Definition cv.hpp:9978
MS_ProteoWizard_msconvert
ProteoWizard msconvert: Converts, filters, and processes mass spectrometry data in variety of formats...
Definition cv.hpp:7062
UNIMOD_dHex_1_Hex_2_HexA_1_HexNAc_2_
dHex(1)Hex(2)HexA(1)HexNAc(2): DHex Hex(2) HexA HexNAc(2).
Definition cv.hpp:12963
UNIMOD_Gly
Gly: Addition of Glycine.
Definition cv.hpp:12039
MS_native_source_path
native source path: The original source path used for directory-based sources.
Definition cv.hpp:6585
MS_ProteinExtractor_MinNumberOfPeptides
ProteinExtractor:MinNumberOfPeptides: The minimum number of proteins to consider.
Definition cv.hpp:4686
MS_SQID_score
SQID:score: The SQID result 'Score'.
Definition cv.hpp:6075
UNIMOD_Tyr__Ala
Tyr->Ala: Tyr->Ala substitution.
Definition cv.hpp:11964
UNIMOD_Phenylisocyanate_2H_5_
Phenylisocyanate:2H(5): D5-phenyl isocyanate.
Definition cv.hpp:10149
MS_CS
CS (charge stripping): The reaction of a positive ion with an atom or molecule that results in the re...
Definition cv.hpp:1167
MS_6140_Quadrupole_LC_MS
6140 Quadrupole LC/MS: The 6140 Quadrupole LC/MS system is a Agilent liquid chromatography instrument...
Definition cv.hpp:2010
MS_database_IPI_rat
database IPI_rat: International Protein Index database for Rattus norvegicus sequences.
Definition cv.hpp:4260
MS_ion_optics
ion optics: Device used in the construction of a mass spectrometer to focus, contain or otherwise man...
Definition cv.hpp:1980
MS_16_bit_float_OBSOLETE
16-bit float: Signed 16-bit float.
Definition cv.hpp:2166
MS_3200_QTRAP
3200 QTRAP: SCIEX or Applied Biosystems|MDS SCIEX QTRAP 3200.
Definition cv.hpp:2625
MS_SEQUEST
SEQUEST: The name of the SEQUEST search engine.
Definition cv.hpp:4053
UNIMOD_dHex_1_Hex_4_HexNAc_4_Sulf_1_
dHex(1)Hex(4)HexNAc(4)Sulf(1): DHex Hex(4) HexNAc(4) Sulf.
Definition cv.hpp:12582
MS_ProteomeDiscoverer_Spectrum_Score_Filter_Let_Pass_Above_Scores
ProteomeDiscoverer:Spectrum Score Filter:Let Pass Above Scores: Determines whether spectra with score...
Definition cv.hpp:5343
UNIMOD_BEMAD_C_2H_6_
BEMAD_C:2H(6): Beta elimination of alkylated Cys followed by Michael addition of labelled DTT.
Definition cv.hpp:10917
MS_PepsinA
PepsinA: PepsinA proteinase.
Definition cv.hpp:4344
MS_pmf_search
pmf search: A peptide mass fingerprint search.
Definition cv.hpp:3702
UO_square_meter
square meter: An area unit which is equal to an area enclosed by a square with sides each 1 meter lon...
Definition cv.hpp:14043
MS_frag__precursor_ion___NH3
frag: precursor ion - NH3: Fragmentation information, type of product: precursor ion without ammonia.
Definition cv.hpp:4971
MS_software_specific_input_parameter
software specific input parameter: Software specific input parameter.
Definition cv.hpp:6762
MS_FAB
FAB (fast atom bombardment ionization): The ionization of any species by the interaction of a focused...
Definition cv.hpp:516
UNIMOD_Phe__Asp
Phe->Asp: Phe->Asp substitution.
Definition cv.hpp:11529
MS_protein_group_level_probability
protein group-level probability: Probability that at least one of the members of a group of protein s...
Definition cv.hpp:7578
UNIMOD_Met__Val
Met->Val: Met->Val substitution.
Definition cv.hpp:10599
UNIMOD_dHex_2_Hex_4_HexNAc_3_
dHex(2)Hex(4)HexNAc(3): DHex(2) Hex(4) HexNAc(3).
Definition cv.hpp:12528
UNIMOD_PhosphoHex
PhosphoHex: Phosphoglycosyl-D-mannose-1-phosphoryl.
Definition cv.hpp:10194
MS_Mascot_MGF_format
Mascot MGF format: Mascot MGF file format.
Definition cv.hpp:3669
MS_X500R_QTOF
X500R QTOF: SCIEX X500R QTOF, a quadrupole - quadrupole - time-of-flight mass spectrometer.
Definition cv.hpp:8481
MS_Mascot_RequireBoldRed
Mascot:RequireBoldRed: Only used in Peptide Summary and Select Summary reports. If true,...
Definition cv.hpp:4377
UNIMOD_Val__Xle
Val->Xle: Val->Leu/Ile substitution.
Definition cv.hpp:10767
MS_SEQUEST_xcorr
SEQUEST:xcorr: The SEQUEST result 'XCorr'.
Definition cv.hpp:3924
UNIMOD_dHex_1_Hex_2_HexNAc_1_
dHex(1)Hex(2)HexNAc(1): DHex Hex(2) HexNAc.
Definition cv.hpp:12777
UO_plaque_forming_unit_per_milliliter
plaque forming unit per milliliter: A concentration unit which a measure of plague forming units in o...
Definition cv.hpp:14442
MS_direct_insertion_probe
direct insertion probe: A device for introducing a solid or liquid sample into a mass spectrometer io...
Definition cv.hpp:1182
MS_IsoPrime
IsoPrime: Waters IsoPrime MS.
Definition cv.hpp:858
MS_MS2_tag_based_protein_level_quantitation
MS2 tag-based protein level quantitation: MS2 tag-based protein level quantitation.
Definition cv.hpp:6522
MS_adiabatic_ionization
adiabatic ionization: A process whereby an electron is removed from an atom, ion, or molecule to prod...
Definition cv.hpp:1713
UNIMOD_glyoxalAGE
glyoxalAGE: Glyoxal-derived AGE.
Definition cv.hpp:13587
UNIMOD_Hex_2_HexA_1_NeuAc_1_Pent_1_Sulf_1_
Hex(2)HexA(1)NeuAc(1)Pent(1)Sulf(1): Hex(2) HexA NeuAc Pent Sulf.
Definition cv.hpp:12933
MS_Scaffold__Minimum_Peptide_Probability
Scaffold: Minimum Peptide Probability: Minimum probability a peptide must have to be accepted for pro...
Definition cv.hpp:5130
MS_search_tolerance_plus_value
search tolerance plus value:
Definition cv.hpp:4635
UNIMOD_Label_13C_6_15N_2_
Label:13C(6)15N(2): 13C(6) 15N(2) Silac label.
Definition cv.hpp:9813
MS_reference_ion_OBSOLETE
reference ion: A stable ion whose structure is known with certainty. These ions are usually formed by...
Definition cv.hpp:1704
UNIMOD_dHex_2_Hex_2_HexA_1_HexNAc_2_Sulf_1_
dHex(2)Hex(2)HexA(1)HexNAc(2)Sulf(1): DHex(2) Hex(2) HexA HexNAc(2) Sulf.
Definition cv.hpp:13071
UNIMOD_dHex_1_Hex_2_HexA_1_HexNAc_1_
dHex(1)Hex(2)HexA(1)HexNAc(1): DHex Hex(2) HexA HexNAc.
Definition cv.hpp:12867
MS_SIM_chromatogram
SIM chromatogram (selected ion monitoring chromatogram): Chromatogram created by creating an array of...
Definition cv.hpp:4815
UNIMOD_Phe__Gln
Phe->Gln: Phe->Gln substitution.
Definition cv.hpp:11553
MS_DB_PI_filter
DB PI filter: Filtering applied specifically by predicted protein isoelectric focussing point (pI),...
Definition cv.hpp:3567
UNIMOD_Met__Hpg
Met->Hpg: Methionine replacement by homopropargylglycine.
Definition cv.hpp:11082
UNIMOD_Met__Asp
Met->Asp: Met->Asp substitution.
Definition cv.hpp:11685
MS_multiple_reaction_monitoring_OBSOLETE
multiple reaction monitoring: This term is not recommended. See Selected Reaction Monitoring.
Definition cv.hpp:612
MS_API_5000
API 5000: SCIEX or Applied Biosystems|MDS SCIEX API 5000 MS.
Definition cv.hpp:2634
UNIMOD_Met__His
Met->His: Met->His substitution.
Definition cv.hpp:11697
MS_number_of_detector_counts
number of detector counts: The number of counted events observed in one or a group of elements of a d...
Definition cv.hpp:741
MS_electron_transfer_dissociation
electron transfer dissociation: A process to fragment ions in a mass spectrometer by inducing fragmen...
Definition cv.hpp:2448
UNIMOD_ICPL_13C_6_2H_4_
ICPL:13C(6)2H(4): Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, +10 Da form.
Definition cv.hpp:11028
MS_desorption_electrospray_ionization
desorption electrospray ionization: Combination of electrospray and desorption ionization method that...
Definition cv.hpp:6474
MS_Phenyx_NumberOfMC
Phenyx:NumberOfMC: The number of missed cleavages of a peptide sequence in Phenyx.
Definition cv.hpp:4599
UNIMOD_Ser__Asn
Ser->Asn: Ser->Asn substitution.
Definition cv.hpp:10707
MS_No_PTMs_are_included_in_the_dataset
No PTMs are included in the dataset: No post-translational-modifications are been included in the ide...
Definition cv.hpp:9015
MS_PTM_localization_result_list_statistic
PTM localization result list statistic: Statistic for all items derived from a post-translational mod...
Definition cv.hpp:8529
UO_colony_forming_unit
colony forming unit: A dimensionless count unit which a measure of viable bacterial numbers.
Definition cv.hpp:14427
MS_MSPathFinder
MSPathFinder: PNNL top-down/bottom-up analysis software for identifying peptides and proteoforms in f...
Definition cv.hpp:8580
MS_multichannel_plate
multichannel plate (microchannel plate detector): A thin plate that contains a closely spaced array o...
Definition cv.hpp:672
MS_PIA_XML_format
PIA XML format: A compilation of search engine results in the PIA XML format.
Definition cv.hpp:7614
MS______BDEZ_____P_
(?<=[BDEZ])(?!P): Regular expression for V8-DE.
Definition cv.hpp:4428
UNIMOD_HexNAc_1_NeuGc_1_
HexNAc(1)NeuGc(1): HexNAc NeuGc.
Definition cv.hpp:12390
UNIMOD_trifluoro
trifluoro: Trifluoroleucine replacement of leucine.
Definition cv.hpp:10905
MS_spectral_count_protein_level_quantitation
spectral count protein level quantitation: Spectral count protein level quantitation.
Definition cv.hpp:6492
UNIMOD_dHex_2_Hex_1_HexNAc_4_Sulf_1_
dHex(2)Hex(1)HexNAc(4)Sulf(1): DHex(2) Hex HexNAc(4) Sulf.
Definition cv.hpp:13695
UNIMOD_Label_13C_6__Acetyl
Label:13C(6)+Acetyl: Acetyl 13C(6) Silac label.
Definition cv.hpp:10989
MS_predicted_retention_time
predicted retention time: A time interval from the start of chromatography when an analyte exits a ch...
Definition cv.hpp:3396
UNIMOD_phosphoRibosyl
phosphoRibosyl: Phosphate-ribosylation.
Definition cv.hpp:12210
MS_base_peak_intensity
base peak intensity: The intensity of the greatest peak in the mass spectrum.
Definition cv.hpp:2121
UO_parts_per_notation_unit
parts per notation unit: A dimensionless concentration notation which describes the amount of one sub...
Definition cv.hpp:14295
UO_hour
hour: A time unit which is equal to 3600 seconds or 60 minutes.
Definition cv.hpp:13899
UNIMOD_AccQTag
AccQTag: 6-aminoquinolyl-N-hydroxysuccinimidyl carbamate.
Definition cv.hpp:9747
MS_PROTEINEER
PROTEINEER: Bruker PROTEINEER software.
Definition cv.hpp:2856
MS_TopMG_proteoform_level_cutoff_type
TopMG:proteoform-level cutoff type: Proteoform-level cutoff type for filtering identified proteoform ...
Definition cv.hpp:9246
MS_Mascot_IntegratedSpectralLibrarySearch
Mascot:IntegratedSpectralLibrarySearch: Means that Mascot has integrated the search results of databa...
Definition cv.hpp:8667
MS_ProteinScape_IntensityCoverage
ProteinScape:IntensityCoverage: The intensity coverage of the identified peaks in the spectrum calcul...
Definition cv.hpp:4920
MS_sequential_m_z_separation_method_OBSOLETE
sequential m/z separation method: Sequential m/z separation method.
Definition cv.hpp:1917
MS_Waters_raw_format
Waters raw format: Waters data file format found in a Waters RAW directory, generated from an MS acqu...
Definition cv.hpp:2184
MS_protein_ambiguity_group_result_details
protein ambiguity group result details:
Definition cv.hpp:3900
UO_ratio_300000190
ratio: A dimensionless unit which denotes an amount or magnitude of one quantity relative to another.
Definition cv.hpp:14367
MS_sliding_average_smoothing
sliding average smoothing (moving average smoothing): Reduces intensity spikes by averaging each poin...
Definition cv.hpp:3042
UNIMOD_BEMAD_ST
BEMAD_ST: Beta elimination of modified S or T followed by Michael addition of DTT.
Definition cv.hpp:10866
MS_final_PSM_list
final PSM list: A flag on a list of PSMs (SpectrumIdentificationList) to indicate that this is the fi...
Definition cv.hpp:7767
UNIMOD_Hex_1_HexNAc_2_
Hex(1)HexNAc(2): Hex1HexNAc2.
Definition cv.hpp:9669
MS_Mascot_Distiller
Mascot Distiller: Mascot Distiller.
Definition cv.hpp:4869
UO_square_micrometer
square micrometer: An area unit which is equal to an area enclosed by a square with sides each 1 micr...
Definition cv.hpp:14796
UO_foot_candle
foot candle: An illuminance unit which is equal to the illuminance produced by 1 lumen evenly spread ...
Definition cv.hpp:14256
UNIMOD_Label_2H_6_15N_1_
Label:2H(6)15N(1): Label:2H(6)15N(1).
Definition cv.hpp:12318
MS_p_value_OBSOLETE
p-value: Quality estimation by p-value.
Definition cv.hpp:4008
MS_AXIMA_CFR_MALDI_TOF
AXIMA CFR MALDI-TOF: Shimadzu Biotech AXIMA CFR MALDI-TOF MS.
Definition cv.hpp:2481
UNIMOD_Label_13C_1_2H_3__Oxidation
Label:13C(1)2H(3)+Oxidation: Oxidised methionine 13C(1)2H(3) SILAC label.
Definition cv.hpp:11043
MS_SEQUEST_input_parameter
SEQUEST input parameter: Search engine input parameters specific to SEQUEST.
Definition cv.hpp:6738
MS_LipiDex
LipiDex: An integrated software package for high-confidence lipid identification.
Definition cv.hpp:9345
MS_dynamic_mass_spectrometry_OBSOLETE
dynamic mass spectrometry: A mass spectrometer in which m/z separation using one or more electric fie...
Definition cv.hpp:1479
MS_one_sample_run
one sample run: The raw file contains the run of one sample (e.g. spectral counting,...
Definition cv.hpp:5868
MS_multiple_enzyme_combination_rules_OBSOLETE
multiple enzyme combination rules: OBSOLETE: use attribute independent in mzIdentML instead....
Definition cv.hpp:3639
UNIMOD_Hex_2_HexA_1_HexNAc_1_Sulf_1_
Hex(2)HexA(1)HexNAc(1)Sulf(1): Hex(2) HexA HexNAc Sulf.
Definition cv.hpp:12831
MS_frag__precursor_ion___H2O
frag: precursor ion - H2O: Fragmentation information, type of product: precursor ion without water.
Definition cv.hpp:4968
UNIMOD_Xle__Met
Xle->Met: Leu/Ile->Met substitution.
Definition cv.hpp:10581
UNIMOD_Thr__Met
Thr->Met: Thr->Met substitution.
Definition cv.hpp:10743
MS_peptide_sequence_level_p_value
peptide sequence-level p-value: Estimation of the p-value for distinct peptides once redundant identi...
Definition cv.hpp:6024
UO_attomole
attomole: A substance unit equal to 10^[-18] mol.
Definition cv.hpp:13935
UNIMOD_Chlorination
Chlorination: Chlorination of tyrosine residues.
Definition cv.hpp:11148
UO_femtomole
femtomole: A substance unit equal to 10^[-15] mol.
Definition cv.hpp:13932
MS_protein_group_level_statistical_threshold
protein group-level statistical threshold: Estimated statistical threshold at protein group-level.
Definition cv.hpp:7908
PEFF_Conflict
Conflict: Sequence conflict; a UniProtKB term.
Definition cv.hpp:243
UO_milliunits_per_milliliter
milliunits per milliliter: A unit per milliliter unit which is equal to one thousandth of a unit of a...
Definition cv.hpp:14634
MS_enhanced_resolution_scan_OBSOLETE
enhanced resolution scan: Scan with enhanced resolution.
Definition cv.hpp:3060
UO_cable
cable: A maritime length unit which is equal to 608 feet, 100 fathoms, or 185.3184 metres
Definition cv.hpp:14856
UNIMOD_Xlink_EGS_244_
Xlink:EGS[244]: Water quenched monolink of EGS cross-linker.
Definition cv.hpp:11334
MS_MyriMatch_MVH
MyriMatch:MVH: Using the multivariate hypergeometric distribution and a peak list divided into severa...
Definition cv.hpp:5169
UNIMOD_dHex_2_Hex_2_HexNAc_2_NeuAc_1_
dHex(2)Hex(2)HexNAc(2)NeuAc(1): DHex(2) Hex(2) HexNAc(2) NeuAc —OR— Hex HexNAc(3) dHex(2) Kdn.
Definition cv.hpp:13104
UNIMOD_dHex_1_Hex_3_HexNAc_6_Sulf_1_
dHex(1)Hex(3)HexNAc(6)Sulf(1): DHex Hex(3) HexNAc(6) Sulf.
Definition cv.hpp:12723
MS_database_IPI_mouse
database IPI_mouse: International Protein Index database for Mus musculus sequences.
Definition cv.hpp:4257
MS_quantification_reagent
quantification reagent: Reagent used in labeled quantification methods.
Definition cv.hpp:8259
MS_charge_deconvolution
charge deconvolution: The determination of the mass of an ion based on the mass spectral peaks that r...
Definition cv.hpp:366
MS_identification_attribute
identification attribute: Attribute of an identification item in the result of mass spectrometry prot...
Definition cv.hpp:8538
MS_param__a_ion_NH3_DEPRECATED
param: a ion-NH3 DEPRECATED: Ion a-NH3 parameter information, type of product: a ion with lost ammoni...
Definition cv.hpp:3897
UNIMOD_ICAT_D_2H_8_
ICAT-D:2H(8): Applied Biosystems original ICAT(TM) d8.
Definition cv.hpp:9405
MS_MaxQuant_P_site_localization_probability
MaxQuant:P-site localization probability: The P-site localization probability value from MaxQuant sof...
Definition cv.hpp:6375
MS_Comet_xcorr
Comet:xcorr: The Comet result 'XCorr'.
Definition cv.hpp:7203
MS_TOPP_PeakPickerHiRes
TOPP PeakPickerHiRes: Finds mass spectrometric peaks in high-resoluted profile mass spectra.
Definition cv.hpp:6852
UO_mass_percentage
mass percentage: A dimensionless concentration unit which denotes the mass of a substance in a mixtur...
Definition cv.hpp:14286
UNIMOD_Phe__Ser
Phe->Ser: Phe->Ser substitution.
Definition cv.hpp:10476
MS_Variance_stabilizing_normalization
Variance stabilizing normalization: The model incorporates data calibration (normalization),...
Definition cv.hpp:7080
MS_EI_OBSOLETE
EI (Electronic Ionization): The ionization of an atom or molecule by electrons that are typically acc...
Definition cv.hpp:504
UO_milliampere
milliampere: An electric current unit current which is equal to one thousandth of an ampere or 10^[-3...
Definition cv.hpp:13914
UNIMOD_Ser__Val
Ser->Val: Ser->Val substitution.
Definition cv.hpp:11859
UNIMOD_dHex_2_Hex_2_HexNAc_6_Sulf_1_
dHex(2)Hex(2)HexNAc(6)Sulf(1): DHex(2) Hex(2) HexNAc(6) Sulf.
Definition cv.hpp:13740
MS_linked_scan_OBSOLETE
linked scan: A scan in an instrument with two or more m/z analysers or in a sector mass spectrometer ...
Definition cv.hpp:1557
UO_picometer
picometer: A length unit which is equal to 10^[-12] m.
Definition cv.hpp:13863
MS_Pegasus_4D
Pegasus 4D: LECO nominal mass resolution time-of-flight GCxGC mass spectrometer.
Definition cv.hpp:6258
UO_pico
pico: A prefix in the metric system denoting a factor of 10 to the power of -12.
Definition cv.hpp:14703
MS_Xevo_TQ_XS
Xevo TQ-XS: Waters Corporation Xevo TQ-XS triple quadrupole mass spectrometer.
Definition cv.hpp:8610
MS_Formic_acid
Formic_acid: Formic acid.
Definition cv.hpp:4332
MS_electrospray_supply_type
electrospray supply type: Whether the sprayer is fed or is loaded with sample once.
Definition cv.hpp:6243
MS_TSQ_8000_Evo
TSQ 8000 Evo: Thermo Scientific TSQ 8000 Evo MS.
Definition cv.hpp:8025
MS_M_LDI_L
M@LDI L: Waters oa-ToF based MALDI L.
Definition cv.hpp:876
UO_cubic_meter_per_mole
cubic meter per mole: A molar volume unit which is equal to 1 cubic meter occupied by one mole of a s...
Definition cv.hpp:14070
MS_MIM_spectrum
MIM spectrum (SIM spectrum): Spectrum obtained with the operation of a mass spectrometer in which the...
Definition cv.hpp:2382
MS_NCBI___p_
NCBI *.p*: The sequence database was stored in the NCBI formatdb (*.p*) format.
Definition cv.hpp:4458
UNIMOD_dHex_1_Hex_5_HexNAc_4_Sulf_2_
dHex(1)Hex(5)HexNAc(4)Sulf(2): DHex Hex(5) HexNAc(4) Sulf(2).
Definition cv.hpp:12714
MS_product_ion_detection_probability
product ion detection probability: Probability of detecting product ion when precursor ion is present...
Definition cv.hpp:7119
UNIMOD_Glucuronyl
Glucuronyl: Hexuronic acid.
Definition cv.hpp:9504
UO_ratio_300010006
ratio: A dimensionless ratio unit which, given a pair of quantities a and b, for which b is a multipl...
Definition cv.hpp:14811
MS_LXQ
LXQ: Finnigan LXQ MS.
Definition cv.hpp:1935
MS_DiART_reagent_115
DiART reagent 115: The name of the sample labelled with the DiART reagent 115.
Definition cv.hpp:8739
UNIMOD_PyridoxalPhosphate
PyridoxalPhosphate: Pyridoxal phosphate.
Definition cv.hpp:9480
UNIMOD_Arg__Asp
Arg->Asp: Arg->Asp substitution.
Definition cv.hpp:11823
MS_number_of_distinct_protein_sequences
number of distinct protein sequences: The number of protein clusters that have been identified,...
Definition cv.hpp:7674
UO_cubic_decimeter
cubic decimeter: A volume unit which is equal to one thousand of a cubic meter or 10^[-3] m^[3],...
Definition cv.hpp:14103
MS_lab_personnel
lab personnel: Lab personnel role.
Definition cv.hpp:4230
MS_mass_spectrometry_OBSOLETE
mass spectrometry: The branch of science that deals with all aspects of mass spectrometers and the re...
Definition cv.hpp:1305
MS_SEQUEST_PeptideIdnumber
SEQUEST:PeptideIdnumber: The SEQUEST result 'Id#' in out file (peptide).
Definition cv.hpp:4083
MS_ProteomeDiscoverer_automatic_workload
ProteomeDiscoverer:automatic workload: Flag indicating automatic estimation of the workload level.
Definition cv.hpp:7404
UNIMOD_GIST_Quat
GIST-Quat: Quaternary amine labeling reagent light form (N-term & K).
Definition cv.hpp:9519
UNIMOD_CyDye_Cy5
CyDye-Cy5: Cy5 CyDye DIGE Fluor saturation dye.
Definition cv.hpp:10299
MS_LECO_software
LECO software: LECO software for data acquisition and analysis.
Definition cv.hpp:5808
MS_Ascore
Ascore: A-score for PTM site location at the PSM-level.
Definition cv.hpp:6384
MS_mass_resolving_power_OBSOLETE
mass resolving power: In a mass spectrum, the observed mass divided by the difference between two mas...
Definition cv.hpp:1104
UO_formazin_nephelometric_unit
formazin nephelometric unit: 1000 formazin turbidity units (FNU) on the empirical formazin turbidity ...
Definition cv.hpp:14751
MS_mass_difference
mass difference (delta M): The difference between a theoretically calculated molecular mass M and the...
Definition cv.hpp:6357
MS_LTQ
LTQ: Finnigan LTQ MS.
Definition cv.hpp:1926
MS_PSM_level_result_list_statistic
PSM-level result list statistic: Statistic pertaining to the full list of all PSMs.
Definition cv.hpp:8559
MS_MaxQuant_LFQ_intensity
MaxQuant:LFQ intensity: The data type LFQ intensity produced by MaxQuant.
Definition cv.hpp:6120
MS_multiple_ion_monitoring_spectrum
multiple ion monitoring spectrum (SIM spectrum): Spectrum obtained with the operation of a mass spect...
Definition cv.hpp:2385
UNIMOD_Delta_H_2_C_3_
Delta:H(2)C(3): Acrolein addition +38.
Definition cv.hpp:9774
UNIMOD_Xlink_DTBP_87_
Xlink:DTBP[87]: Cleaved and reduced DTBP crosslinker.
Definition cv.hpp:9951
MS_TopPIC_spectral_cutoff_value
TopPIC:spectral cutoff value: Spectrum-level cutoff value for filtering identified proteoform spectru...
Definition cv.hpp:9183
UO_gray
gray: An absorbed dose unit which is equal to the absorption of one joule of radiation energy by one ...
Definition cv.hpp:14202
MS_PeptideProphet
PeptideProphet: A program in the TPP that calculates PSM probabilities for MS2 proteomics data search...
Definition cv.hpp:7311
MS_TruTOF
TruTOF: LECO bench-top GC time-of-flight mass spectrometer.
Definition cv.hpp:5826
UNIMOD_Lysbiotinhydrazide
Lysbiotinhydrazide: Oxidized Lysine biotinylated with biotin hydrazide.
Definition cv.hpp:10008
MS_DTA_format
DTA format: SEQUEST DTA file format.
Definition cv.hpp:2499
MS_6430_Triple_Quadrupole_LC_MS
6430 Triple Quadrupole LC/MS: The 6430 Quadrupole LC/MS system is a Agilent liquid chromatography ins...
Definition cv.hpp:8817
MS_MALDI_Solutions_LC_MALDI
MALDI Solutions LC-MALDI: Software for automated LC-MALDI analysis and reporting.
Definition cv.hpp:7593
MS_ProteomeDiscoverer_Protein_Database_OBSOLETE
ProteomeDiscoverer:Protein Database: Database to use in the search (configured on the Mascot server).
Definition cv.hpp:5397
UNIMOD_Trp__Ala
Trp->Ala: Trp->Ala substitution.
Definition cv.hpp:11925
MS_Element_XR
Element XR: Thermo Scientific Element XR HR-ICP-MS.
Definition cv.hpp:2607
UNIMOD_Hex_4_HexNAc_2_
Hex(4)HexNAc(2): Hex(4) HexNAc(2).
Definition cv.hpp:12441
MS_Chymotrypsin
Chymotrypsin: Enzyme chymotrypsin.
Definition cv.hpp:4326
MS_Mascot_expectation_value
Mascot:expectation value: The Mascot result 'expectation value'.
Definition cv.hpp:3975
UNIMOD_Met__Gly
Met->Gly: Met->Gly substitution.
Definition cv.hpp:11694
MS_EA_OBSOLETE
EA (electron affinity): The electron affinity of M is the minimum energy required for the process M- ...
Definition cv.hpp:1023
UNIMOD_dHex_2_Hex_2_HexNAc_3_NeuAc_1_
dHex(2)Hex(2)HexNAc(3)NeuAc(1): DHex(2) Hex(2) HexNAc(3) NeuAc.
Definition cv.hpp:13206
UNIMOD_Biotin_Sigma_B1267
Biotin:Sigma-B1267: Was Biotin-maleimide.
Definition cv.hpp:11265
MS_ProteomeDiscoverer_SEQUEST_Weight_of_b_Ions
ProteomeDiscoverer:SEQUEST:Weight of b Ions: Uses b ions for spectrum matching with this relative fac...
Definition cv.hpp:5481
UNIMOD_Hex_9_
Hex(9): Hex(9).
Definition cv.hpp:13701
MS_TopMG_spectral_cutoff_type
TopMG:spectral cutoff type: Spectrum-level cutoff type for filtering identified proteoform spectrum m...
Definition cv.hpp:9240
MS_FI
FI (field ionization): The removal of electrons from any species by interaction with a high electric ...
Definition cv.hpp:1245
MS_decoy_DB_accession_regexp
decoy DB accession regexp: Specify the regular expression for decoy accession numbers.
Definition cv.hpp:4251
UNIMOD_Arg__Orn
Arg->Orn: Ornithine from Arginine.
Definition cv.hpp:10050
UO_poise
poise: A viscosity unit which is equal to one dyne second per square centimeter.
Definition cv.hpp:14571
UNIMOD_G_H1
G-H1: Glyoxal-derived hydroimiadazolone.
Definition cv.hpp:11016
MS_SEQUEST_total_ions
SEQUEST:total ions: The SEQUEST result 'Total Ions'.
Definition cv.hpp:3945
MS_modification_specificity_peptide_C_term
modification specificity peptide C-term: As parameter for search engine: apply the modification only ...
Definition cv.hpp:4005
MS_ProteomeDiscoverer_max_number_of_same_modifs
ProteomeDiscoverer:max number of same modifs: The maximum number of possible equal modifications per ...
Definition cv.hpp:7431
MS_MSPathFinder_SpecEValue
MSPathFinder:SpecEValue: MSPathFinder spectral E-value.
Definition cv.hpp:8583
MS_Scaffold_input_parameter
Scaffold input parameter: Search engine input parameters specific to Scaffold.
Definition cv.hpp:6765
UNIMOD_dHex_2_Hex_1_HexNAc_2_NeuAc_1_
dHex(2)Hex(1)HexNAc(2)NeuAc(1): DHex(2) Hex HexNAc(2) NeuAc.
Definition cv.hpp:13011
MS_PSM_level_local_FDR
PSM-level local FDR: Estimation of the local false discovery rate of peptide spectrum matches.
Definition cv.hpp:7503
MS_Quattro_micro_GC
Quattro micro GC: Waters (triple) quadrupole based Quattro micro GC.
Definition cv.hpp:5781
UO_joule
joule: An energy unit which is equal to the energy required when a force of 1 newton moves an object ...
Definition cv.hpp:14139
MS_Skyline
Skyline: Software used to predict, select, and optimize transitions as well as analyze the results of...
Definition cv.hpp:3474
MS_base_peak_m_z
base peak m/z: M/z value of the signal of highest intensity in the mass spectrum.
Definition cv.hpp:2118
UNIMOD_GlycerylPE
GlycerylPE: Glycerylphosphorylethanolamine.
Definition cv.hpp:10110
UNIMOD_Menadione
Menadione: Menadione quinone derivative.
Definition cv.hpp:9903
MS_Bruker_BAF_nativeID_format__combined_spectra
Bruker BAF nativeID format, combined spectra: Bruker BAF comma separated list of spectra that have be...
Definition cv.hpp:8412
MS_single_peak_list_nativeID_format__combined_spectra
single peak list nativeID format, combined spectra: Comma separated list of spectra that have been co...
Definition cv.hpp:8421
MS_frag__immonium_ion
frag: immonium ion: Fragmentation information, type of product: immonium ion.
Definition cv.hpp:4149
MS_BSI_software
BSI software: Bioinformatics Solutions Inc. Software for data processing and analysis.
Definition cv.hpp:6270
UNIMOD_MTSL
MTSL: Cys modification by (1-oxyl-2,2,5,5-tetramethyl-3-pyrroline-3-methyl)methanesulfonate (MTSL).
Definition cv.hpp:11112
MS_LipidQA
LipidQA: Lipid qualitative/quantitative analysis software for identification and quantitation of comp...
Definition cv.hpp:9363
MS_SQID
SQID: Software for data analysis of peptides and proteins.
Definition cv.hpp:6072
UNIMOD_dHex_1_Hex_3_HexNAc_1_Sulf_1_
dHex(1)Hex(3)HexNAc(1)Sulf(1): DHex Hex(3) HexNAc Sulf.
Definition cv.hpp:12888
MS_Progenesis_LC_MS
Progenesis LC-MS: Software from Nonlinear Dynamics for LC-MS label-free workflow.
Definition cv.hpp:5904
MS_TOPP_software_adaptor
TOPP software adaptor: Software adaptor to an external program in the TOPP software.
Definition cv.hpp:6987
UNIMOD_Hex_3_HexNAc_2_Phos_1_
Hex(3)HexNAc(2)Phos(1): Hex(3) HexNAc(2) Phos.
Definition cv.hpp:9708
UNIMOD_Gln__Glu
Gln->Glu: Gln->Glu substitution.
Definition cv.hpp:10650
MS_TOPP_IDMapper
TOPP IDMapper: Assigns protein/peptide identifications to feature or consensus features.
Definition cv.hpp:7020
MS_null_terminated_ASCII_string
null-terminated ASCII string: Sequence of zero or more non-zero ASCII characters terminated by a sing...
Definition cv.hpp:4842
MS_protein_level_result_list_attribute
protein-level result list attribute: Attribute of an entire protein list.
Definition cv.hpp:8568
MS_ProteomeDiscoverer_Xtract_Resolution_At_400
ProteomeDiscoverer:Xtract:Resolution At 400: Resolution at mass 400.
Definition cv.hpp:5334
UO_meter_per_second_per_second
meter per second per second: An acceleration unit which is equal to the acceleration an object changi...
Definition cv.hpp:14034
MS_quantification_information
quantification information: Quantification information.
Definition cv.hpp:3846
UNIMOD_Hex_4_HexNAc_3_
Hex(4)HexNAc(3): Hex(4) HexNAc(3).
Definition cv.hpp:13350
MS_plasma_desorption
plasma desorption: The ionization of material in a solid sample by bombarding it with ionic or neutra...
Definition cv.hpp:759
MS_IKES_OBSOLETE
IKES (ion kinetic energy spectrometry): A method of analysis in which a beam of ions is separated acc...
Definition cv.hpp:1257
MS_Digital_Object_Identifier__DOI_
Digital Object Identifier (DOI): DOI unique identifier of a publication.
Definition cv.hpp:6183
MS_Mascot_PreferredTaxonomy
Mascot:PreferredTaxonomy: NCBI TaxID taxonomy ID to prefer when two or more proteins match the same s...
Definition cv.hpp:5793
UNIMOD_Hex_1_HexNAc_1_NeuAc_2_Ac_2_
Hex(1)HexNAc(1)NeuAc(2)Ac(2): Ac(2) Hex HexNAc NeuAc(2).
Definition cv.hpp:12951
UNIMOD_Cation_Ni_II_
Cation:Ni[II]: Replacement of 2 protons by nickel.
Definition cv.hpp:11196
UNIMOD_DNCB_hapten
DNCB_hapten: Chemical reaction with 2,4-dinitro-1-chloro benzene (DNCB).
Definition cv.hpp:12180
UNIMOD_His__Tyr
His->Tyr: His->Tyr substitution.
Definition cv.hpp:10518
UNIMOD_Hex_4_HexNAc_5_NeuAc_1_
Hex(4)HexNAc(5)NeuAc(1): Hex(4) HexNAc(5) NeuAc.
Definition cv.hpp:12738
MS_sampled_noise_intensity_array
sampled noise intensity array: A data array of intensity values for the amplitude of noise variation ...
Definition cv.hpp:8652
MS_time_series__time_point_X
time series, time point X: The experimental design followed a time series design. The time point of t...
Definition cv.hpp:5859
UO_confluence_percentage
confluence percentage: A dimensionless percent unit which denotes the density of an attached or monol...
Definition cv.hpp:14379
MS_TopMG_N_term_form
TopMG:N-term form: N-terminal forms of proteins allowed in TopMG searching.
Definition cv.hpp:9231
MS_search_engine_specific_peptide_sequence_level_identification_statistic
search engine specific peptide sequence-level identification statistic: Search engine specific distin...
Definition cv.hpp:7524
UNIMOD_Unknown_250
Unknown:250: Unidentified modification of 249.981 found in open search.
Definition cv.hpp:13770
MS_frag__isobaric_label_ion
frag: isobaric label ion: Fragment ion corresponding to an isobaric label artifact.
Definition cv.hpp:8544
MS_search_statistics
search statistics: The details of the actual run of the search.
Definition cv.hpp:3999
MS_nativeID_format
nativeID format (native spectrum identifier format): Describes how the native spectrum identifiers ar...
Definition cv.hpp:2973
UNIMOD_Cysteinyl
Cysteinyl: Cysteinylation.
Definition cv.hpp:9927
MS_moving_average_smoothing
moving average smoothing: Reduces intensity spikes by averaging each point with two or more adjacent ...
Definition cv.hpp:3033
MS_TripleTOF_5600_
TripleTOF 5600+: SCIEX TripleTOF 5600+ time-of-flight mass spectrometer.
Definition cv.hpp:8205
UO_radian
radian: A plane angle unit which is equal to the angle subtended at the center of a circle by an arc ...
Definition cv.hpp:14172
MS_atmospheric_pressure_matrix_assisted_laser_desorption_ionization
atmospheric pressure matrix-assisted laser desorption ionization: Matrix-assisted laser desorption io...
Definition cv.hpp:1128
UNIMOD_DeStreak
DeStreak: Cysteine mercaptoethanol.
Definition cv.hpp:9906
UNIMOD_Pro__His
Pro->His: Pro->His substitution.
Definition cv.hpp:10629
MS_protein_level_e_value
protein-level e-value: Estimation of the e-value for proteins.
Definition cv.hpp:6033
UNIMOD_Xlink_BuUrBu_317_
Xlink:BuUrBu[317]: Tris quenched monolink of BuUrBu crosslinker.
Definition cv.hpp:13539
UNIMOD_Cys__Asn
Cys->Asn: Cys->Asn substitution.
Definition cv.hpp:11442
MS_LOBSTAHS
LOBSTAHS: Adduct-Based lipidomics software for the discovery and identification of oxidative stress b...
Definition cv.hpp:9360
UNIMOD_Trimethyl_2H_9_
Trimethyl:2H(9): 3-fold methylation with deuterated methyl groups.
Definition cv.hpp:12234
UO_activity__of_a_radionuclide__unit
activity (of a radionuclide) unit: A unit which is a standard measure of the transformation (disinteg...
Definition cv.hpp:14184
MS_cluster_identifier
cluster identifier: An identifier applied to protein groups to indicate that they are linked by share...
Definition cv.hpp:7671
MS_molecular_beam_mass_spectrometry_OBSOLETE
molecular beam mass spectrometry: A mass spectrometry technique in which the sample is introduced int...
Definition cv.hpp:1071
MS_micrOTOF
micrOTOF: Bruker Daltonics' micrOTOF: ESI TOF, APCI, APPI.
Definition cv.hpp:2775
UNIMOD_dHex_2_HexNAc_7_
dHex(2)HexNAc(7): DHex(2) HexNAc(7).
Definition cv.hpp:13272
UNIMOD_Asp__Phe
Asp->Phe: Asp->Phe substitution.
Definition cv.hpp:11460
MS_ion_mobility_array
ion mobility array: An array of ion mobility data.
Definition cv.hpp:9102
MS_two_dimensional_gas_chromatography_with_discrete_modulation_time_steps
two-dimensional gas chromatography with discrete modulation time steps: Two-dimensional gas chromatog...
Definition cv.hpp:6708
UO_light_unit
light unit: A unit which is a standard measure of the intensity of light.
Definition cv.hpp:14268
UNIMOD_Val__Asp
Val->Asp: Val->Asp substitution.
Definition cv.hpp:10764
MS_instrument_attribute
instrument attribute: Instrument properties that are associated with a value.
Definition cv.hpp:2091
MS_field_desorption
field desorption: The formation of gas-phase ions from a material deposited on a solid surface in the...
Definition cv.hpp:1236
UNIMOD_ICDID_2H_6_
ICDID:2H(6): Isotope-Coded Dimedone heavy form.
Definition cv.hpp:11328
UO_volt_second_per_square_centimeter
volt-second per square centimeter: An electrical mobility unit which is equal to one volt second per ...
Definition cv.hpp:14814
MS_ProteomeDiscoverer_Reporter_Ions_Quantizer_Integration_Window_Tolerance
ProteomeDiscoverer:Reporter Ions Quantizer:Integration Window Tolerance: Specifies the mass-to-charge...
Definition cv.hpp:5511
UNIMOD_Biotin_Thermo_21325
Biotin:Thermo-21325: Was ChromoBiotin.
Definition cv.hpp:11040
UNIMOD_Hypusine
Hypusine: Hypusine.
Definition cv.hpp:10068
UNIMOD_Hex_2_HexNAc_4_
Hex(2)HexNAc(4): Hex(2) HexNAc(4).
Definition cv.hpp:12999
MS_consensus_scoring
consensus scoring: Consensus multiple search engine approach performed.
Definition cv.hpp:7926
MS_MSPepSearch_score
MSPepSearch:score: MSPepSearch score (0 for entirely dissimilar and 1000 for identical observed spect...
Definition cv.hpp:8682
UNIMOD_Xlink_DMP_139_
Xlink:DMP[139]: Ammonia quenched monolink of DMP crosslinker.
Definition cv.hpp:13581
UNIMOD_dHex_1_Hex_3_HexNAc_3_Pent_2_
dHex(1)Hex(3)HexNAc(3)Pent(2): DHex Hex(3) HexNAc(3) Pent(2).
Definition cv.hpp:12507
MS_SEQUEST_Sequences
SEQUEST:Sequences:
Definition cv.hpp:4524
UNIMOD_dHex_1_Hex_5_HexNAc_3_NeuAc_1_
dHex(1)Hex(5)HexNAc(3)NeuAc(1): DHex Hex(5) HexNAc(3) NeuAc.
Definition cv.hpp:12672
MS_PSM_FDR_threshold
PSM:FDR threshold: False-discovery rate threshold for peptide-spectrum matches.
Definition cv.hpp:7227
MS_____K____P_
(?<=K)(?!P): Regular expression for Lys-C.
Definition cv.hpp:4413
MS_PI
PI (photoionization): The ionization of an atom or molecule by a photon, written M + h?...
Definition cv.hpp:1338
UNIMOD_Galactosyl
Galactosyl: Gluconoylation.
Definition cv.hpp:11103
UO_magnetic_flux_unit
magnetic flux unit: A unit which is a standard measure of quantity of magnetism, taking account of th...
Definition cv.hpp:14472
UNIMOD_DYn_2
DYn-2: Sulfenic Acid specific probe.
Definition cv.hpp:13497
MS_isoelectric_point
isoelectric point: The pH of a solution at which a charged molecule does not migrate in an electric f...
Definition cv.hpp:3282
UNIMOD_dHex_2_Hex_3_HexNAc_4_NeuAc_1_
dHex(2)Hex(3)HexNAc(4)NeuAc(1): DHex(2) Hex(3) HexNAc(4) NeuAc.
Definition cv.hpp:13737
UNIMOD_Cys__PyruvicAcid
Cys->PyruvicAcid: Pyruvic acid from N-term cys.
Definition cv.hpp:10077
UNIMOD_Diironsubcluster
Diironsubcluster: Hydrogenase diiron subcluster.
Definition cv.hpp:10221
UNIMOD_Cation_Na
Cation:Na: Sodium adduct.
Definition cv.hpp:9441
UNIMOD_EDT_maleimide_PEO_biotin
EDT-maleimide-PEO-biotin: EDT-maleimide-PEO-biotin.
Definition cv.hpp:9552
MS_surface_induced_reaction_OBSOLETE
surface-induced reaction: A process wherein a reactant ion interacts with a surface to produce either...
Definition cv.hpp:1899
PEFF_Transit
Transit: Sequence range of transit peptide.
Definition cv.hpp:240
UO_base_unit
base unit: A unit which is one of a particular measure to which all measures of that type can be rela...
Definition cv.hpp:13938
MS_ProteomeDiscoverer_Spectrum_Files_Raw_File_names_OBSOLETE
ProteomeDiscoverer:Spectrum Files:Raw File names: Name and location of the .raw file or files.
Definition cv.hpp:5217
MS_peptide_group_label
peptide group label: An arbitrary string label used to mark a set of peptides that belong together in...
Definition cv.hpp:3384
MS_instrument_additional_description_OBSOLETE
instrument additional description: Additional terms to describe the instrument as outlined in the mas...
Definition cv.hpp:1953
UO_exa
exa: A prefix in the metric system denoting a factor of ten to the power of 18.
Definition cv.hpp:14664
MS_autoflex_III_TOF_TOF_smartbeam
autoflex III TOF/TOF smartbeam: Bruker Daltonics' autoflex III TOF/TOF smartbeam: MALDI TOF.
Definition cv.hpp:5061
UNIMOD_Cresylphosphate
Cresylphosphate: O-toluyl-phosphorylation.
Definition cv.hpp:12018
MS_LCQ_Fleet
LCQ Fleet: LCQ Fleet.
Definition cv.hpp:2346
MS_MAT900XP_Trap
MAT900XP Trap: ThermoFinnigan MAT900XP Trap MS.
Definition cv.hpp:888
MS_ion_injection_time
ion injection time: The length of time spent filling an ion trapping device.
Definition cv.hpp:3489
UNIMOD_Xle__Pro
Xle->Pro: Leu/Ile->Pro substitution.
Definition cv.hpp:10569
UO_katal
katal: A catalytic unit activity which is equal to the activity of a catalyst in moles per second,...
Definition cv.hpp:14163
MS_DeBunker_score_threshold
DeBunker:score threshold: Threshold for DeBunker PTM site location score.
Definition cv.hpp:8133
MS_6542_Q_TOF_LC_MS
6542 Q-TOF LC/MS: The 6542 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrum...
Definition cv.hpp:8790
MS_binary_data_type
binary data type: Encoding type of binary data specifying the binary representation and precision,...
Definition cv.hpp:2160
MS_Bruker_Daltonics_HCT_Series
Bruker Daltonics HCT Series: Bruker Daltonics' HCT Series.
Definition cv.hpp:2760
UNIMOD_NQIGG
NQIGG: SUMOylation by Giardia lamblia.
Definition cv.hpp:13410
MS_Associated_raw_file_URI
Associated raw file URI: URI of one raw data file associated to the PRIDE experiment (maybe through a...
Definition cv.hpp:8961
MS_precursor_ion_scan_OBSOLETE
precursor ion scan: The specific scan function or process that will record a precursor ion spectrum.
Definition cv.hpp:618
UNIMOD_Hex_2_HexNAc_1_NeuGc_2_
Hex(2)HexNAc(1)NeuGc(2): Hex(2) HexNAc NeuGc(2).
Definition cv.hpp:13002
MS_electron_multiplier
electron multiplier: A device to amplify the current of a beam or packet of charged particles or phot...
Definition cv.hpp:1212
MS_XIC_area
XIC area: Area of the extracted ion chromatogram (e.g. of a transition in SRM).
Definition cv.hpp:5988
UNIMOD_Carbonyl
Carbonyl: Aldehyde and ketone modifications.
Definition cv.hpp:13602
MS_ProteinScape_second_round_Mascot
ProteinScape:second round Mascot: Flag indicating a second round search with Mascot.
Definition cv.hpp:6315
UNIMOD_Gly__Gln
Gly->Gln: Gly->Gln substitution.
Definition cv.hpp:11586
MS_LTQ_Orbitrap_XL_ETD
LTQ Orbitrap XL ETD: Thermo Scientific LTQ Orbitrap XL MS with ETD.
Definition cv.hpp:2589
MS_absolute_quantitation_analysis
absolute quantitation analysis: Absolute quantitation analysis.
Definition cv.hpp:7992
MS_ProteomeDiscoverer_Mascot_Weight_of_Z_Ions
ProteomeDiscoverer:Mascot:Weight of Z Ions: Determines if to use z ions for spectrum matching.
Definition cv.hpp:5667
UNIMOD_Glu__pyro_Glu_Methyl_2H_2_13C_1_
Glu->pyro-Glu+Methyl:2H(2)13C(1): Pyro-Glu from E + Methylation Medium.
Definition cv.hpp:13428
MS_Bruker_Agilent_YEP_nativeID_format
Bruker/Agilent YEP nativeID format: Native format defined by scan=xsd:nonNegativeInteger.
Definition cv.hpp:2985
MS_detector_potential
detector potential: Detector potential difference in volts.
Definition cv.hpp:7266
MS_sample_pre_fractionation
sample pre-fractionation: Sample pre-fractionation performed.
Definition cv.hpp:7929
MS_6460_Triple_Quadrupole_LC_MS
6460 Triple Quadrupole LC/MS: The 6460 Quadrupole LC/MS system is a Agilent liquid chromatography ins...
Definition cv.hpp:7785
UNIMOD_Trp__Xle
Trp->Xle: Trp->Leu/Ile substitution.
Definition cv.hpp:10785
MS_TOPP_SpectraFilterParentPeakMower
TOPP SpectraFilterParentPeakMower: Filters putative unfragmented precursor ions from tandem spectra.
Definition cv.hpp:6873
MS_infrared_multiphoton_dissociation
infrared multiphoton dissociation: Multiphoton ionization where the reactant ion dissociates as a res...
Definition cv.hpp:1266
MS_iRT_retention_time_normalization_standard
iRT retention time normalization standard: A de facto standard providing the retention times at which...
Definition cv.hpp:6447
UO_kilogram_per_mole
kilogram per mole: A molar mass unit which is equal to one kilogram of mass of one mole of chemical e...
Definition cv.hpp:14064
MS_declustering_potential
declustering potential: Potential difference between the orifice and the skimmer in volts.
Definition cv.hpp:3327
MS_chromatography_OBSOLETE
chromatography: Chromatographic conditions used to obtain the sample.
Definition cv.hpp:438
MS_TOPP_noise_filter
TOPP noise filter: Noise filter component of the TOPP software.
Definition cv.hpp:6840
MS_6120B_Quadrupole_LC_MS
6120B Quadrupole LC/MS: The 6120B Quadrupole LC/MS system is a Agilent liquid chromatography instrume...
Definition cv.hpp:8802
UNIMOD_dHex_1_Hex_2_
dHex(1)Hex(2): Hex2dHex1.
Definition cv.hpp:12240
MS_MassLynx
MassLynx: Micromass software for data acquisition and analysis.
Definition cv.hpp:2208
MS_wavelet_transformation_smoothing
wavelet transformation smoothing: The random noise is removed by using the undecimated wavelet transf...
Definition cv.hpp:6420
MS_peak_list_scans
peak list scans: A list of scan numbers and or scan ranges associated with a peak list....
Definition cv.hpp:3078
UNIMOD_Arg__Glu
Arg->Glu: Arg->Glu substitution.
Definition cv.hpp:11826
MS_ionization_energy_OBSOLETE
ionization energy: The minimum energy required to remove an electron from an atom or molecule to prod...
Definition cv.hpp:1044
MS_mzML_unique_identifier__combined_spectra
mzML unique identifier, combined spectra: Comma separated list of spectra that have been combined pri...
Definition cv.hpp:8430
MS_height_peak_picking
height peak picking: Spectral peak processing conducted on the acquired data to convert profile data ...
Definition cv.hpp:3096
MS_MS2_tag_based_analysis
MS2 tag-based analysis: MS2 tag-based analysis.
Definition cv.hpp:6513
UNIMOD_OxLysBiotin
OxLysBiotin: Oxidized lysine biotinylated with biotin-LC-hydrazide.
Definition cv.hpp:9579
MS_ProteomeDiscoverer_SEQUEST_Weight_of_z_Ions
ProteomeDiscoverer:SEQUEST:Weight of z Ions: Uses z ions for spectrum matching with this relative fac...
Definition cv.hpp:5502
MS_TOPP_CompNovo
TOPP CompNovo: Performs a peptide/protein identification with the CompNovo engine.
Definition cv.hpp:6981
MS_object_attribute
object attribute: Object Attribute.
Definition cv.hpp:2250
UNIMOD_NEM_2H_5_
NEM:2H(5): D5 N-ethylmaleimide on cysteines.
Definition cv.hpp:10947
UNIMOD_Molybdopterin
Molybdopterin: Molybdopterin.
Definition cv.hpp:10095
MS_PIA_workflow_parameter
PIA workflow parameter: A parameter set for a single PIA analysis.
Definition cv.hpp:7617
UO_molecule_count
molecule count: A dimensionless count unit which denotes the number of molecules.
Definition cv.hpp:14373
UO_dosage_unit
dosage unit: A concentration unit which is a standard measure of the amount of a toxic or pharmaceuti...
Definition cv.hpp:14727
MS_mzR
mzR: Bioconductor package mzR for reading and writing mass spectrometry data files.
Definition cv.hpp:9030
MS_SpectraST_dot_bias
SpectraST:dot_bias: SpectraST measure of how much of the dot product is dominated by a few peaks.
Definition cv.hpp:4653
MS_TopMG_error_tolerance
TopMG:error tolerance: Error tolerance for precursor and fragment masses in PPM.
Definition cv.hpp:9234
UO_microeinstein_per_square_meter_per_second
microeinstein per square meter per second: An irradiance unit which is equal to one microeinstein per...
Definition cv.hpp:14277
UNIMOD_His__Thr
His->Thr: His->Thr substitution.
Definition cv.hpp:11619
UNIMOD_Didehydro
Didehydro: 2-amino-3-oxo-butanoic_acid.
Definition cv.hpp:10122
MS_ProteinScape_SearchEventId
ProteinScape:SearchEventId: The SearchEventId of the SearchEvent in the ProteinScape database.
Definition cv.hpp:4893
UNIMOD_Met_loss_Acetyl
Met-loss+Acetyl: Removal of initiator methionine from protein N-terminus, then acetylation of the new...
Definition cv.hpp:10923
MS_focal_plane_array
focal plane array: An array of detectors for spatially disperse ion beams in which all ions simultane...
Definition cv.hpp:666
MS_TWIMS_OBSOLETE
TWIMS (travelling wave ion mobility mass spectrometer): An ion mobility mass spectrometry technique b...
Definition cv.hpp:5805
UNIMOD_Ser__Tyr
Ser->Tyr: Ser->Tyr substitution.
Definition cv.hpp:10713
MS_Andi_MS_format
Andi-MS format: AIA Analytical Data Interchange file format for mass spectrometry data.
Definition cv.hpp:7773
UNIMOD_Hex_6_HexNAc_2_
Hex(6)HexNAc(2): Hex(6) HexNAc(2).
Definition cv.hpp:12480
UO_mega
mega: A prefix in the metric system denoting a factor of million.
Definition cv.hpp:14676
UNIMOD_DimethylArsino
DimethylArsino: Reaction with dimethylarsinous (AsIII) acid.
Definition cv.hpp:11088
MS_UIMF_format
UIMF format: SQLite-based file format created at Pacific Northwest National Lab. It stores an interme...
Definition cv.hpp:8046
MS_Lys_C
Lys-C: Endoproteinase Lys-C.
Definition cv.hpp:4335
UNIMOD_a_type_ion
a-type-ion: ISD a-series (C-Term).
Definition cv.hpp:9645
MS_Quistor
Quistor (quadrupole ion trap): Quadrupole Ion Trap mass analyzer captures the ions in a three dimensi...
Definition cv.hpp:555
MS_date___time_search_performed_OBSOLETE
date / time search performed: OBSOLETE: use attribute in mzIdentML instead. Date and time of the actu...
Definition cv.hpp:3597
UNIMOD_His__Met
His->Met: His->Met substitution.
Definition cv.hpp:11613
MS_frag__internal_yb_ion
frag: internal yb ion: Fragmentation information, type of product: internal yb ion.
Definition cv.hpp:4503
MS_ProteinExtractor_UseProteinSolver
ProteinExtractor:UseProteinSolver: Flag indicating to include ProteinSolver scoring for calculation o...
Definition cv.hpp:4716
MS_Comet_spscore
Comet:spscore: The Comet result 'SpScore'.
Definition cv.hpp:7212
MS_base_peak
base peak: The peak in a mass spectrum that has the greatest intensity. This term may be applied to t...
Definition cv.hpp:1008
UNIMOD_dHex_1_Hex_5_HexNAc_4_NeuAc_2_
dHex(1)Hex(5)HexNAc(4)NeuAc(2): DHex Hex(5) HexNAc(4) NeuAc(2).
Definition cv.hpp:12336
MS_proteomics_solution_1
proteomics solution 1: Applied Biosystems/MDS SCIEX Proteomics Solution 1 MS.
Definition cv.hpp:924
MS_ion_energy_loss_spectrum_OBSOLETE
ion energy loss spectrum: A plot of the relative abundance of a beam or other collection of ions as a...
Definition cv.hpp:1851
MS_collisionally_activated_dissociation
collisionally activated dissociation (collision-induced dissociation): The dissociation of an ion aft...
Definition cv.hpp:756
UNIMOD_Lys__Val
Lys->Val: Lys->Val substitution.
Definition cv.hpp:11670
MS_PEFF_format
PEFF format: The sequence database was stored in the PEFF (PSI enhanced FastA file) format.
Definition cv.hpp:4785
UNIMOD_ICPL_13C_6_
ICPL:13C(6): Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, heavy form.
Definition cv.hpp:10032
UNIMOD_EHD_diphenylpentanone
EHD-diphenylpentanone: 2-ethyl-3-hydroxy-1,3-diphenylpentan-1-one.
Definition cv.hpp:12150
MS_CompassXtract
CompassXtract: Bruker software library for data access.
Definition cv.hpp:2823
UO_solid_angle_unit
solid angle unit: A unit which is a standard measure of the angle formed by three or more planes inte...
Definition cv.hpp:14175
MS_ionization_type
ionization type: The method by which gas phase ions are generated from the sample.
Definition cv.hpp:285
MS_submitter_keyword
submitter keyword: Keyword assigned by the data submitter.
Definition cv.hpp:6195
UNIMOD_Carboxymethyl_13C_2_
Carboxymethyl:13C(2): Iodoacetic acid derivative w/ 13C label.
Definition cv.hpp:10944
MS_SEQUEST_matched_ions
SEQUEST:matched ions: The SEQUEST result 'Matched Ions'.
Definition cv.hpp:3942
MS_stored_waveform_inverse_fourier_transform
stored waveform inverse fourier transform: A technique to create excitation waveforms for ions in FT-...
Definition cv.hpp:1401
UNIMOD_Heme
Heme: Heme.
Definition cv.hpp:10092
MS_Mascot_identity_threshold
Mascot:identity threshold: The Mascot result 'identity threshold'.
Definition cv.hpp:4521
MS_AXIMA_QIT
AXIMA-QIT: Shimadzu Biotech AXIMA-QIT MS.
Definition cv.hpp:2484
MS_ProteomeDiscoverer_Mascot_Number_of_attempts_to_submit_the_search
ProteomeDiscoverer:Mascot:Number of attempts to submit the search: Number of attempts to submit the M...
Definition cv.hpp:5364
UNIMOD_Furan
Furan: Chemical modification of the iodinated sites of thyroglobulin by Suzuki reaction.
Definition cv.hpp:12063
MS_ProteomeDiscoverer_Spectrum_Grouper_Max_RT_Difference_OBSOLETE
ProteomeDiscoverer:Spectrum Grouper:Max RT Difference: Chromatographic window where precursors to be ...
Definition cv.hpp:5307
UNIMOD_Diethylphosphothione
Diethylphosphothione: O-diethylphosphothione.
Definition cv.hpp:13782
UNIMOD_EDT_iodoacetyl_PEO_biotin
EDT-iodoacetyl-PEO-biotin: EDT-iodo-PEO-biotin.
Definition cv.hpp:9594
MS_OMSSA_pvalue
OMSSA:pvalue: OMSSA p-value.
Definition cv.hpp:4395
MS_ProteomeDiscoverer_Spectrum_Selector_Precursor_Clipping_Range_After
ProteomeDiscoverer:Spectrum Selector:Precursor Clipping Range After: Precursor clipping range after.
Definition cv.hpp:6693
UNIMOD_Argbiotinhydrazide
Argbiotinhydrazide: Oxidized Arginine biotinylated with biotin hydrazide.
Definition cv.hpp:9984
UNIMOD_NBS_13C_6_
NBS:13C(6): Shimadzu NBS-13C.
Definition cv.hpp:9717
MS_ProteinLynx_XML_format
ProteinLynx XML format: Source file for this mzIdentML was in Waters ProteinLynx XML format.
Definition cv.hpp:5097
MS_precursor_activation_attribute
precursor activation attribute: Precursor Activation Attribute.
Definition cv.hpp:2136
UNIMOD_SPITC_13C_6_
SPITC:13C(6): 4-sulfophenyl isothiocyanate (Heavy C13).
Definition cv.hpp:10269
MS_SWIFT
SWIFT (stored waveform inverse fourier transform): A technique to create excitation waveforms for ion...
Definition cv.hpp:1404
MS_TOPP_FeatureFinderMRM
TOPP FeatureFinderMRM: Quantifies features LC-MS/MS MRM data.
Definition cv.hpp:6957
MS_reaction
reaction (transition): A set of two m/z values corresponding to the precursor m/z and a fragment m/z ...
Definition cv.hpp:3432
MS_low_energy_collision_induced_dissociation
low-energy collision-induced dissociation: A collision-induced dissociation process wherein the precu...
Definition cv.hpp:1875
UNIMOD_Met__Tyr
Met->Tyr: Met->Tyr substitution.
Definition cv.hpp:11715
MS_pwiz
pwiz (ProteoWizard software): ProteoWizard software for data processing and analysis....
Definition cv.hpp:2508
MS_solution
solution: State if the sample is in solution form.
Definition cv.hpp:429
MS_detector_acquisition_mode
detector acquisition mode: Method by which detector signal is acquired by the data system.
Definition cv.hpp:345
MS_PeptideShaker_PSM_confidence_type
PeptideShaker PSM confidence type: PeptideShaker quality criteria for the confidence of PSM's.
Definition cv.hpp:8073
UNIMOD_Diethylphosphate
Diethylphosphate: O-Diethylphosphorylation.
Definition cv.hpp:10842
MS_TOPP_SpectraFilterBernNorm
TOPP SpectraFilterBernNorm: Applies a Bern et al normalization to peak spectra.
Definition cv.hpp:6861
MS_FWHM
FWHM (full width at half-maximum): A measure of resolution represented as width of the peak at half p...
Definition cv.hpp:573
MS_LC_MS_label_free_quantitation_analysis
LC-MS label-free quantitation analysis: LC-MS label-free workflow (RT m/z map).
Definition cv.hpp:5916
UNIMOD_Hex_6_HexNAc_2_Phos_1_
Hex(6)HexNAc(2)Phos(1): Hex(6) HexNAc(2) Phos.
Definition cv.hpp:12495
MS_ProteomeDiscoverer_Scan_Type_OBSOLETE
ProteomeDiscoverer:Scan Type: Scan type for the precursor ion (full, Single Ion Monitoring (SIM),...
Definition cv.hpp:5256
UNIMOD_Val__Gln
Val->Gln: Val->Gln substitution.
Definition cv.hpp:11907
MS_contact_name
contact name: Name of the contact person or organization.
Definition cv.hpp:2409
MS_sum_of_MatchedFeature_values_OBSOLETE
sum of MatchedFeature values: Peptide quantification value calculated as sum of MatchedFeature quanti...
Definition cv.hpp:5961
MS_Dataset_with_its_publication_pending
Dataset with its publication pending: A dataset which has an associated manuscript pending for public...
Definition cv.hpp:8997
MS_normalized_XIC_area
normalized XIC area: Normalized area of the extracted ion chromatogram (e.g. of a transition in SRM).
Definition cv.hpp:5991
UO_lumen
lumen: A luminous flux unit which is equal to the luminous flux emitted into 1 steradian by a point s...
Definition cv.hpp:14157
UNIMOD_dHex_1_Hex_4_HexNAc_3_Pent_1_
dHex(1)Hex(4)HexNAc(3)Pent(1): DHex Hex(4) HexNAc(3) Pent.
Definition cv.hpp:12519
MS_SEQUEST_Uniq
SEQUEST:Uniq:
Definition cv.hpp:3933
UNIMOD_Gln__Ser
Gln->Ser: Gln->Ser substitution.
Definition cv.hpp:11805
MS_ion_neutral_complex_OBSOLETE
ion/neutral complex: A particular type of transition state that lies between precursor and product io...
Definition cv.hpp:1860
MS_DiART_reagent_116
DiART reagent 116: The name of the sample labelled with the DiART reagent 116.
Definition cv.hpp:8742
MS_Bruker_TDF_nativeID_format__combined_spectra
Bruker TDF nativeID format, combined spectra: Bruker TDF comma separated list of spectra that have be...
Definition cv.hpp:8880
MS_contact_attribute
contact attribute: Details about a person or organization to contact in case of concern or discussion...
Definition cv.hpp:2406
MS_sector_mass_spectrometer_OBSOLETE
sector mass spectrometer: A mass spectrometer consisting of one or more magnetic sectors for m/z sele...
Definition cv.hpp:1464
MS_SEQUEST_FormatAndLinks
SEQUEST:FormatAndLinks:
Definition cv.hpp:3819
MS_amaZon_Speed
amaZon Speed: Bruker Daltonics' amaZon ETD: ESI quadrupole ion trap, Nanospray, APCI,...
Definition cv.hpp:7353
MS_heterolytic_cleavage_OBSOLETE
heterolytic cleavage: Fragmentation of a molecule or ion in which both electrons forming the single b...
Definition cv.hpp:1833
MS_PSM_level_statistical_threshold
PSM-level statistical threshold: Estimated statistical threshold at PSM-level.
Definition cv.hpp:7899
UNIMOD_Hex_2_HexNAc_3_NeuGc_2_
Hex(2)HexNAc(3)NeuGc(2): Hex(2) HexNAc(3) NeuGc(2).
Definition cv.hpp:13227
MS_Xevo_G2_XS_Tof
Xevo G2 XS Tof: Waters Corporation Xevo G2 XS Tof orthogonal acceleration time-of-flight mass spectro...
Definition cv.hpp:8607
UNIMOD_PyMIC
PyMIC: 3-methyl-2-pyridyl isocyanate.
Definition cv.hpp:10311
UO_century
century: A time unit which is equal to 100 years.
Definition cv.hpp:14250
UNIMOD_Lys__Pro
Lys->Pro: Lys->Pro substitution.
Definition cv.hpp:11664
MS_ProteomeDiscoverer_Spectrum_Grouper_Allow_Mass_Analyzer_Mismatch
ProteomeDiscoverer:Spectrum Grouper:Allow Mass Analyzer Mismatch: Determines whether the fragment spe...
Definition cv.hpp:5301
UNIMOD_SulfanilicAcid
SulfanilicAcid: Light Sulfanilic Acid (SA) C12.
Definition cv.hpp:9864
MS_PRIDE_experiment_URI
PRIDE experiment URI: URI that allows the access to one experiment in the PRIDE database.
Definition cv.hpp:6207
MS_SILAC_reagent
SILAC reagent: Stable isotope labeling with amino acids in cell culture reagent.
Definition cv.hpp:8286
UNIMOD_dHex_1_Hex_2_HexNAc_2_Sulf_1_
dHex(1)Hex(2)HexNAc(2)Sulf(1): DHex Hex(2) HexNAc(2) Sulf.
Definition cv.hpp:12909
MS_PDA_spectrum_OBSOLETE
PDA spectrum: Spectrum generated from a photodiode array detector (ultraviolet/visible spectrum).
Definition cv.hpp:2523
UNIMOD_dHex_2_HexNAc_2_Kdn_1_
dHex(2)HexNAc(2)Kdn(1): DHex(2) HexNAc(2) Kdn.
Definition cv.hpp:12906
MS_source_file
source file (raw data file): Describes the type of file and its content.
Definition cv.hpp:2343
PEFF_VariantSimple
VariantSimple: Simple sequence variation of a single amino acid change. A change to a stop codon is p...
Definition cv.hpp:258
UNIMOD_Diiodo
Diiodo: Di-Iodination.
Definition cv.hpp:9624
MS_Paragon__instrument_setting
Paragon: instrument setting: The Paragon method setting (translating to a large number of lower level...
Definition cv.hpp:7722
UO_week
week: A time unit which is equal to 7 days.
Definition cv.hpp:13905
MS_LTQ_Velos_ETD
LTQ Velos ETD: Thermo Scientific LTQ Velos MS with ETD.
Definition cv.hpp:3264
MS_search_result_details_OBSOLETE
search result details: OBSOLETE: Scores and global result characteristics.
Definition cv.hpp:4068
UNIMOD_Pyridylethyl
Pyridylethyl: S-pyridylethylation.
Definition cv.hpp:9444
MS_stainless_steel_plate
stainless steel plate: Stainless steel plate.
Definition cv.hpp:6237
UO_unit_per_milliliter
unit per milliliter: A unit per milliliter unit which is equal to one unit of an agreed arbitrary amo...
Definition cv.hpp:14331
MS_PSM_is_used_for_peptide_level_scoring
PSM is used for peptide-level scoring: Flags a PSM that it is used for peptide-level scoring.
Definition cv.hpp:7959
MS_tab_delimited_text_format
tab delimited text format: A file format that has two or more columns of tabular data where each colu...
Definition cv.hpp:3450
UNIMOD_Val__Tyr
Val->Tyr: Val->Tyr substitution.
Definition cv.hpp:11922
UNIMOD_Phe__Xle
Phe->Xle: Phe->Leu/Ile substitution.
Definition cv.hpp:10482
UNIMOD_PEITC
PEITC: Phenethyl isothiocyanate.
Definition cv.hpp:11241
UO_picomolal
picomolal: A molality unit which is equal to 10^[-12] m.
Definition cv.hpp:14019
UO_time_unit
time unit: A unit which is a standard measure of the dimension in which events occur in sequence.
Definition cv.hpp:13812
MS_mass_unit_OBSOLETE
mass unit: A unit of measurement for mass.
Definition cv.hpp:1989
UNIMOD_Glu__Xle
Glu->Xle: Glu->Leu/Ile substitution.
Definition cv.hpp:11499
MS_mzidLib_Perform_emPAI_on_mzid
mzidLib:Perform emPAI on mzid: A routine for adding emPAI quantitative values to an mzIdentML file.
Definition cv.hpp:7176
MS_ClinProTools
ClinProTools: Bruker ClinProTools software.
Definition cv.hpp:2802
UNIMOD_His__Asn
His->Asn: His->Asn substitution.
Definition cv.hpp:9993
MS_alternating_OBSOLETE
alternating: Alternating.
Definition cv.hpp:1995
MS_TOPP_ProteinQuantifier
TOPP ProteinQuantifier: Computes protein abundances from annotated feature/consensus maps.
Definition cv.hpp:6960
MS_array_detector
array detector: Detector comprising several ion collection elements, arranged in a line or grid where...
Definition cv.hpp:1608
UNIMOD_3_deoxyglucosone
3-deoxyglucosone: Condensation product of 3-deoxyglucosone.
Definition cv.hpp:11184
MS_mzidLib_Mzidentml2Csv
mzidLib:Mzidentml2Csv: A tool for converting mzIdentML files to CSV format.
Definition cv.hpp:7182
MS_SEQUEST_TopPercentMostIntense
SEQUEST:TopPercentMostIntense: Specify "percentage" as value of the CVParam.
Definition cv.hpp:3747
MS_DB_PI_filter_minimum
DB PI filter minimum: Minimum value of isoelectric point filter.
Definition cv.hpp:4047
MS_time_of_flight_mass_spectrometer_OBSOLETE
time-of-flight mass spectrometer: An instrument that separates ions by m/z in a field-free region aft...
Definition cv.hpp:1419
UO_millimeter
millimeter: A length unit which is equal to one thousandth of a meter or 10^[-3] m.
Definition cv.hpp:13851
UNIMOD_Glu__Asn
Glu->Asn: Glu->Asn substitution.
Definition cv.hpp:11505
MS_nanoACQUITY_UPLC_System_with_1D_Technology
nanoACQUITY UPLC System with 1D Technology: Waters LC-system nanoACQUITY UPLC System with 1D Technolo...
Definition cv.hpp:5715
MS_decoy_DB_from_IPI_human_OBSOLETE
decoy DB from IPI_human: Decoy database from a International Protein Index database for Homo sapiens.
Definition cv.hpp:4302
UNIMOD_Xlink_DSS_138_
Xlink:DSS[138]: Intact DSS/BS3 crosslinker.
Definition cv.hpp:13548
MS_ProteomeDiscoverer_SEQUEST_Max_Identical_Modifications_Per_Peptide
ProteomeDiscoverer:SEQUEST:Max Identical Modifications Per Peptide: Maximum number of identical modif...
Definition cv.hpp:5430
MS_ion_mobility_drift_time
ion mobility drift time: Drift time of an ion or spectrum of ions as measured in an ion mobility mass...
Definition cv.hpp:7878
MS_Regular_expression_for_adduct_ion_formula
Regular expression for adduct ion formula: ([[:digit:]{0,1}M([+][:digit:]{0,1}(H|K|(Na)|(Li)|(Cl)|(Br...
Definition cv.hpp:8856
MS_sample_number
sample number: A reference number relevant to the sample under study.
Definition cv.hpp:264
MS_fast_atom_bombardment_ionization
fast atom bombardment ionization: The ionization of any species by the interaction of a focused beam ...
Definition cv.hpp:513
UNIMOD_dHex_2_Hex_2_HexNAc_5_
dHex(2)Hex(2)HexNAc(5): DHex(2) Hex(2) HexNAc(5).
Definition cv.hpp:13251
MS_H3PO4_neutral_loss_OBSOLETE
H3PO4 neutral loss: Neutral loss of phosphoric acid.
Definition cv.hpp:7821
UNIMOD_Gln__Cys
Gln->Cys: Gln->Cys substitution.
Definition cv.hpp:11787
UO_dimensionless_unit
dimensionless unit: A unit which is a standard measure of physical quantity consisting of only a nume...
Definition cv.hpp:14355
MS_superelastic_collision_OBSOLETE
superelastic collision: Collision in which the translational energy of the fast-moving collision part...
Definition cv.hpp:1896
UNIMOD_dHex_1_Hex_1_HexNAc_2_Kdn_1_
dHex(1)Hex(1)HexNAc(2)Kdn(1): DHex Hex HexNAc(2) Kdn —OR— Hex(2) HexNAc dHex NeuAc.
Definition cv.hpp:12918
MS_homolytic_cleavage_OBSOLETE
homolytic cleavage: Fragmentation of an odd electron ion that results from one of a pair of electrons...
Definition cv.hpp:1845
UNIMOD_His__Glu
His->Glu: His->Glu substitution.
Definition cv.hpp:11601
UNIMOD_dHex_1_Hex_2_HexNAc_2_NeuAc_2_Sulf_1_
dHex(1)Hex(2)HexNAc(2)NeuAc(2)Sulf(1): DHex Hex(2) HexNAc(2) NeuAc(2) Sulf.
Definition cv.hpp:13224
UNIMOD_Asn__Gly
Asn->Gly: Asn->Gly substitution.
Definition cv.hpp:11730
UNIMOD_Hex_1_NeuAc_1_Pent_1_
Hex(1)NeuAc(1)Pent(1): Hex NeuAc Pent.
Definition cv.hpp:12411
MS_Bruker_Daltonics_esquire_series
Bruker Daltonics esquire series: Bruker Daltonics' esquire series.
Definition cv.hpp:5004
MS_Ascore_software
Ascore software: Ascore software.
Definition cv.hpp:6381
MS_iTRAQH_quantitation_analysis
iTRAQH quantitation analysis: Quantification analysis using the carbonyl-reactive isobaric tags for r...
Definition cv.hpp:8700
MS_combined_FDRScore_for_proteins
combined FDRScore for proteins: MzidLibrary Combined FDRScore for proteins.
Definition cv.hpp:7548
MS_four_sample_run
four sample run: The raw file contains the run of four samples (e.g. 4-plex iTraq).
Definition cv.hpp:5877
MS_2_iodobenzoate
2-iodobenzoate: Chemical iodobenzoate. Cleaves after W.
Definition cv.hpp:6174
UNIMOD_EEEDVIEVYQEQTGG
EEEDVIEVYQEQTGG: Sumoylation by SUMO-1 after Cyanogen bromide (CNBr) cleavage.
Definition cv.hpp:12321
MS_frag__z_ion___H2O
frag: z ion - H2O: Fragmentation information, type of product: z ion without water.
Definition cv.hpp:4956
MS_ProteinScape_input_parameter
ProteinScape input parameter: Search engine input parameters specific to ProteinScape.
Definition cv.hpp:6750
MS_transition_validation_method
transition validation method: The strategy used to validate that a transition is effective.
Definition cv.hpp:3435
UNIMOD_Val__Thr
Val->Thr: Val->Thr substitution.
Definition cv.hpp:11916
UNIMOD_Cys__Ala
Cys->Ala: Cys->Ala substitution.
Definition cv.hpp:11421
MS_spectrum_identification_list_result_details
spectrum identification list result details: Information about the list of PSMs (SpectrumIdentificati...
Definition cv.hpp:7764
UNIMOD_HexNAc_5_
HexNAc(5): HexNAc(5).
Definition cv.hpp:12948
MS_emPAI_value
emPAI value: The emPAI value of protein abundance, produced from the emPAI algorithm.
Definition cv.hpp:6129
UNIMOD_Cys__SecNEM
Cys->SecNEM: N-ethylmaleimide on selenocysteines.
Definition cv.hpp:11358
MS_CI
CI (chemical ionization): The formation of a new ion by the reaction of a neutral species with an ion...
Definition cv.hpp:498
UNIMOD_Thr__Tyr
Thr->Tyr: Thr->Tyr substitution.
Definition cv.hpp:11889
MS_TIQAM
TIQAM: Software used to predict, select, and optimize transitions for selected reaction monitoring ex...
Definition cv.hpp:3477
MS_positive_scan
positive scan: Polarity of the scan is positive.
Definition cv.hpp:738
MS_Thermo_Electron_instrument_model
Thermo Electron instrument model: Thermo Electron Corporation instrument model.
Definition cv.hpp:2076
UNIMOD_Label_2H_4_13C_1_
Label:2H(4)13C(1): Label:2H(4)13C(1).
Definition cv.hpp:12114
MS_secondary_ionization
secondary ionization: The process in which ions are ejected from a sample surface as a result of bomb...
Definition cv.hpp:1779
UNIMOD_Label_2H_4__Acetyl
Label:2H(4)+Acetyl: Acetyl 4,4,5,5-D4 Lysine.
Definition cv.hpp:10986
MS_sampled_noise_baseline_array
sampled noise baseline array: A data array of baseline intensity values (the intensity in the absence...
Definition cv.hpp:8655
MS_chrom_format
chrom format: The Lipid Data Analyzer native chrom format.
Definition cv.hpp:9321
MS_ProteomeDiscoverer_Minimal_peptide_probability
ProteomeDiscoverer:Minimal peptide probability: Minimum adjusted peptide probability contributing to ...
Definition cv.hpp:5592
MS_precursor_activation
precursor activation: Terms to describe the precursor activation.
Definition cv.hpp:1959
MS_FDRScore_for_proteins
FDRScore for proteins: MzidLibrary FDRScore for proteins specifically obtained for distinct combinati...
Definition cv.hpp:7545
UNIMOD_dHex_3_Hex_3_HexNAc_4_
dHex(3)Hex(3)HexNAc(4): DHex(3) Hex(3) HexNAc(4).
Definition cv.hpp:12618
MS_OMEGA
OMEGA: IonSpec OMEGA MS.
Definition cv.hpp:909
UNIMOD_dHex_3_Hex_3_HexNAc_3_
dHex(3)Hex(3)HexNAc(3): DHex(3) Hex(3) HexNAc(3).
Definition cv.hpp:13218
MS_Q_TRAP
Q TRAP: Applied Biosystems/MDS SCIEX Q TRAP MS.
Definition cv.hpp:927
MS_cross_link_acceptor
cross-link acceptor: Cross-linking acceptor, assigned according to the following rules: the export so...
Definition cv.hpp:7980
MS_TagRecon_MVH
TagRecon:MVH (MyriMatch:MVH): Using the multivariate hypergeometric distribution and a peak list divi...
Definition cv.hpp:5175
MS_TOPP_IDFileConverter
TOPP IDFileConverter: Converts identification engine file formats.
Definition cv.hpp:6915
MS_common_search_engine_input_parameter
common search engine input parameter: Search engine input parameter that is shared by more than one s...
Definition cv.hpp:6732
MS_spectrum_instrument_description_OBSOLETE
spectrum instrument description: Terms used to describe the spectrum.
Definition cv.hpp:1971
UNIMOD_DiART6plex118
DiART6plex118: Accurate mass for DiART6plex 118.
Definition cv.hpp:12300
UNIMOD_Phe__Tyr
Phe->Tyr: Phe->Tyr substitution.
Definition cv.hpp:10485
UNIMOD_IGBP_13C_2_
IGBP:13C(2): Heavy IDBEST tag for quantitation.
Definition cv.hpp:10305
MS_unit_OBSOLETE
unit: Terms to describe units.
Definition cv.hpp:1974
MS_M_H_ion_1002820
M+H ion: M+H ion from positive ion mode (M in the property ionMass denotes the mass of the neutral mo...
Definition cv.hpp:8883
MS_protein_level_identification_attribute
protein-level identification attribute: Protein level information.
Definition cv.hpp:3714
MS_decoy_DB_type_randomized
decoy DB type randomized: Decoy type: Amino acids of protein sequences are randomized (keeping the or...
Definition cv.hpp:4023
MS_maXis
maXis: Bruker Daltonics' maXis: ESI Q-TOF, Nanospray, APCI, APPI.
Definition cv.hpp:5028
MS_charge_inversion_reaction_OBSOLETE
charge inversion reaction: Reaction of an ion with a neutral species in which the charge on the produ...
Definition cv.hpp:1815
MS_Vion_IMS_QTof
Vion IMS QTof: Waters Corporation Vion IMS QTof orthogonal acceleration time-of-flight mass spectrome...
Definition cv.hpp:8604
UO_volume_percentage
volume percentage: A dimensionless concentration unit which denotes the volume of the solute in mL pe...
Definition cv.hpp:14292
MS_Additional_associated_raw_file_URI
Additional associated raw file URI: Additional URI of one raw data file associated to the PRIDE exper...
Definition cv.hpp:9000
UO_kilodalton
kilodalton: A mass unit which is equal to one thousand daltons.
Definition cv.hpp:14463
UNIMOD_OxArgBiotin
OxArgBiotin: Oxidized arginine biotinylated with biotin-LC-hydrazide.
Definition cv.hpp:9588
UNIMOD_dHex_2_Hex_3_
dHex(2)Hex(3): DHex(2) Hex(3).
Definition cv.hpp:12828
MS_linear_ion_trap
linear ion trap: A two dimensional Paul ion trap in which ions are confined in the axial dimension by...
Definition cv.hpp:1434
UNIMOD_Glu__Lys
Glu->Lys: Glu->Lys substitution.
Definition cv.hpp:10467
MS_EMT
EMT (electron multiplier tube): A device to amplify the current of a beam or packet of charged partic...
Definition cv.hpp:660
MS_API_300
API 300: Applied Biosystems/MDS SCIEX API 300 MS.
Definition cv.hpp:8217
MS_DB_MW_filter_maximum
DB MW filter maximum: Maximum value of molecular weight filter.
Definition cv.hpp:4038
UNIMOD_Decarboxylation
Decarboxylation: Decarboxylation.
Definition cv.hpp:13593
MS_maldi_spot_identifier_OBSOLETE
maldi spot identifier: Maldi Spot Identifier.
Definition cv.hpp:2265
MS_pI
pI (isoelectric point): The pH of a solution at which a charged molecule does not migrate in an elect...
Definition cv.hpp:3285
MS_PROTEINEER_LC
PROTEINEER-LC: Bruker PROTEINEER-LC software.
Definition cv.hpp:2868
MS_MaxQuant_PTM_Delta_Score_threshold
MaxQuant:PTM Delta Score threshold: Threshold for MaxQuant:PTM Delta Score.
Definition cv.hpp:8148
MS_protein_group_level_result_list_attribute
protein group-level result list attribute: Details describing a protein cluster.
Definition cv.hpp:7665
MS_peak_list_raw_scans
peak list raw scans: A list of raw scans and or scan ranges used to generate a peak list....
Definition cv.hpp:3081
MS_MaxQuant_Phospho__STY__Probabilities_threshold
MaxQuant:Phospho (STY) Probabilities threshold: Threshold for MaxQuant:Phospho (STY) Probabilities.
Definition cv.hpp:8151
MS_product_ion_drift_time_OBSOLETE
product ion drift time: The ion drift time of an MS2 product ion.
Definition cv.hpp:6324
MS_6300_Series_Ion_Trap_Data_Analysis_Software
6300 Series Ion Trap Data Analysis Software: Software for data analysis of 6300 series ion trap mass ...
Definition cv.hpp:2733
MS_experimental_condition__case_
experimental condition 'case': The experimental condition is 'case' in contrast to 'control'.
Definition cv.hpp:5844
UNIMOD_Hex_4_HexNAc_5_
Hex(4)HexNAc(5): Hex(4) HexNAc(5).
Definition cv.hpp:12573
MS_SymBiot_XVI
SymBiot XVI: Applied Biosystems/MDS SCIEX SymBiot XVI MS.
Definition cv.hpp:951
MS_LC_MS_feature_volume
LC-MS feature volume: Real (intensity times area) volume of the LC-MS feature.
Definition cv.hpp:5937
MS_ISB_mzXML_format
ISB mzXML format: Institute of Systems Biology mzXML file format.
Definition cv.hpp:2307
MS_spectra_combination
spectra combination: Method used to combine the mass spectra.
Definition cv.hpp:2319
UNIMOD_Biotin_Thermo_21901_H2O
Biotin:Thermo-21901+H2O: Maleimide-Biotin + Water.
Definition cv.hpp:11376
MS_database_type_spectral_library
database type spectral library: Database containing spectra.
Definition cv.hpp:8676
UNIMOD_Cys__CamSec
Cys->CamSec: Sec Iodoacetamide derivative.
Definition cv.hpp:11304
MS_TMT_reagent_127C
TMT reagent 127C: The name of the sample labelled with the TMT reagent 127C.
Definition cv.hpp:8712
UNIMOD_Unknown_216
Unknown:216: Unidentified modification of 216.1002 found in open search.
Definition cv.hpp:13761
MS_selected_ion_monitoring_spectrum
selected ion monitoring spectrum (SIM spectrum): Spectrum obtained with the operation of a mass spect...
Definition cv.hpp:2388
MS_protein_group_level_e_value
protein group-level e-value: Estimation of the e-value for protein groups.
Definition cv.hpp:7566
UNIMOD_Dimethyl_2H_4_13C_2_
Dimethyl:2H(4)13C(2): DiMethyl-C13HD2.
Definition cv.hpp:10326
MS_protein_attribute
protein attribute: An nonphysical attribute describing a specific protein.
Definition cv.hpp:3354
MS_constant_neutral_mass_loss_OBSOLETE
constant neutral mass loss: A spectrum formed of all product ions that have been produced with a sele...
Definition cv.hpp:606
MS_final_MS_exponent
final MS exponent: Final MS level achieved when performing PFF with the ion trap (e....
Definition cv.hpp:333
MS_emission_chromatogram
emission chromatogram: The measurement of light emitted by the sample as a function of the retention ...
Definition cv.hpp:3138
PEFF_ModRes
ModRes: Modified residue without PSI-MOD identifier.
Definition cv.hpp:213
UNIMOD_Ub_fluorescein
Ub-fluorescein: Ub Fluorescein probe addition.
Definition cv.hpp:12033
MS_TopPIC
TopPIC: TopPIC: a software tool for top-down mass spectrometry-based proteoform identification and ch...
Definition cv.hpp:9126
UNIMOD_dHex_1_Hex_1_HexNAc_3_Sulf_1_
dHex(1)Hex(1)HexNAc(3)Sulf(1): DHex Hex HexNAc(3) Sulf.
Definition cv.hpp:12930
MS_LipidMatch
LipidMatch: An automated workflow for rule-based lipid identification using untargeted high-resolutio...
Definition cv.hpp:9330
UNIMOD_Tyr__Phe
Tyr->Phe: Tyr->Phe substitution.
Definition cv.hpp:10788
MS_SIM
SIM (selected ion monitoring): The operation of a mass spectrometer in which the intensities of sever...
Definition cv.hpp:987
MS_ionization_mode_OBSOLETE
ionization mode: Whether positive or negative ions are selected for analysis by the spectrometer.
Definition cv.hpp:288
MS_apex_IV
apex IV: Bruker Daltonics' apex IV: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR.
Definition cv.hpp:789
MS_7000A_Triple_Quadrupole_GC_MS
7000A Triple Quadrupole GC/MS: The 7000A Quadrupole GC/MS system is a Agilent gas chromatography inst...
Definition cv.hpp:8826
MS_DiART_quantitation_analysis
DiART quantitation analysis: Quantification analysis using the amine-reactive deuterium isobaric amin...
Definition cv.hpp:8703
UO_molar_mass_unit
molar mass unit: A unit which is a standard measure of the mass of a homogeneous substance containing...
Definition cv.hpp:13968
UNIMOD_CAF
CAF: Sulfonation of N-terminus.
Definition cv.hpp:9843
MS_ProteinScape_PFFSolverExp
ProteinScape:PFFSolverExp: The ProteinSolver exp value stored by ProteinScape.
Definition cv.hpp:4914
MS_TOPP_XTandemAdapter
TOPP XTandemAdapter: Identifies MS2 spectra using the external program XTandem.
Definition cv.hpp:7005
MS_impact_angle
impact angle: Describes the angle between the laser beam and the sample target.
Definition cv.hpp:3243
MS_ProteomeXchange_project_tag
ProteomeXchange project tag: Tag that can be added to a ProteomeXchange dataset, to enable the groupi...
Definition cv.hpp:7470
MS_msPrefix_precursor_recalculation
msPrefix precursor recalculation: Recalculates one or more precursor selected ions by peak detection ...
Definition cv.hpp:3015
MS_first_author
first author: The first of a set of authors associated with a publication or release....
Definition cv.hpp:6546
MS_protein_list_attribute
protein list attribute: Attribute describing a protein list.
Definition cv.hpp:6789
UO_femtogram
femtogram: A mass unit which is equal to 10^[-15] g.
Definition cv.hpp:13881
UNIMOD_Glycosyl
Glycosyl: Glycosyl-L-hydroxyproline.
Definition cv.hpp:10137
MS_M_H_ion_1002821
M-H ion: M-H ion from negative ion mode (M in the property ionMass denotes the mass of the neutral mo...
Definition cv.hpp:8886
UNIMOD_O_Dimethylphosphate
O-Dimethylphosphate: O-Dimethylphosphorylation.
Definition cv.hpp:10836
MS_frag__y_ion___H2O
frag: y ion - H2O: Fragmentation information, type of product: y ion without water.
Definition cv.hpp:4095
UNIMOD_Hex_4_HexNAc_4_NeuAc_1_Sulf_2_
Hex(4)HexNAc(4)NeuAc(1)Sulf(2): Hex(4) HexNAc(4) NeuAc Sulf(2).
Definition cv.hpp:13311
MS_ProteomeDiscoverer_max_equal_modifications
ProteomeDiscoverer:max equal modifications: Maximum equal modifications per PSM.
Definition cv.hpp:7413
MS_Daly
Daly (daly detector): Detector consisting of a conversion dynode, scintillator and photomultiplier....
Definition cv.hpp:654
MS_Triple_Quad_6500_
Triple Quad 6500+: SCIEX Triple Quad 6500+.
Definition cv.hpp:8238
MS_peptide_sequence_level_result_list_statistic
peptide sequence-level result list statistic: Statistic pertaining to all peptide sequences in the li...
Definition cv.hpp:8565
MS_frag__precursor_ion
frag: precursor ion: Fragmentation information, type of product: precursor ion.
Definition cv.hpp:4974
UNIMOD_Hex_5_HexA_1_
Hex(5)HexA(1): Hex(5) HexA.
Definition cv.hpp:13674
MS_peptide
peptide: A compound of low molecular weight that is composed of two or more amino acids.
Definition cv.hpp:3276
UNIMOD_Hex_3_HexNAc_4_Pent_1_
Hex(3)HexNAc(4)Pent(1): Hex(3) HexNAc(4) Pent.
Definition cv.hpp:12492
MS_SCIEX_TOF_TOF_T2D_nativeID_format
SCIEX TOF/TOF T2D nativeID format: Native format defined by file=xsd:IDREF.
Definition cv.hpp:5076
UNIMOD_Hex_4_HexNAc_4_NeuGc_1_
Hex(4)HexNAc(4)NeuGc(1): Hex(4) HexNAc(4) NeuGc.
Definition cv.hpp:13719
MS_Mascot_PTM_site_assignment_confidence_threshold
Mascot:PTM site assignment confidence threshold: Threshold for Mascot PTM site assignment confidence.
Definition cv.hpp:8136
MS_ProteinExtractor_MascotPeptideScoreThreshold
ProteinExtractor:MascotPeptideScoreThreshold: Only peptides with scores higher than that threshold ar...
Definition cv.hpp:4692
UNIMOD_Hex_4_HexNAc_4_NeuAc_1_
Hex(4)HexNAc(4)NeuAc(1): Hex(4) HexNAc(4) NeuAc.
Definition cv.hpp:13374
MS_search_time_taken
search time taken: The time taken to complete the search in seconds.
Definition cv.hpp:3600
MS_chromatogram_type
chromatogram type: Broad category or type of a chromatogram.
Definition cv.hpp:2547
UO_dose_unit
dose unit: A concentration unit which is a standard measure of the amount of a toxic or pharmaceutica...
Definition cv.hpp:14718
UNIMOD_Tyr__Glu
Tyr->Glu: Tyr->Glu substitution.
Definition cv.hpp:11967
MS_decoy_MRM_transition
decoy MRM transition (decoy SRM transition): A transition not expected to be present in the sample an...
Definition cv.hpp:6465
MS_SEQUEST_ShowFragmentIons
SEQUEST:ShowFragmentIons: Flag indicating that fragment ions should be shown.
Definition cv.hpp:3603
UNIMOD_Hex_2_HexNAc_1_Me_1_
Hex(2)HexNAc(1)Me(1): Hex(2) HexNAc Me.
Definition cv.hpp:12405
MS_Progenesis_automatic_alignment
Progenesis automatic alignment: Automatic RT alignment of Progenesis software.
Definition cv.hpp:6009
UNIMOD_Trp__Pro
Trp->Pro: Trp->Pro substitution.
Definition cv.hpp:11949
MS_Andromeda_result_format
Andromeda result format: Andromeda result file output format.
Definition cv.hpp:8181
MS_OMSSA_xml_format
OMSSA xml format: Source file for this mzIdentML was in OMSSA xml file format.
Definition cv.hpp:4608
MS_database_release_date_OBSOLETE
database release date: OBSOLETE: Use attribute in mzIdentML instead. Release date of the search datab...
Definition cv.hpp:3549
UNIMOD_Ser__Gly
Ser->Gly: Ser->Gly substitution.
Definition cv.hpp:10725
MS_molecules_per_cell
molecules per cell: The absolute abundance of protein in a cell.
Definition cv.hpp:7989
MS_ProteomeDiscoverer_Spectrum_Selector_SN_Threshold_FTonly
ProteomeDiscoverer:Spectrum Selector:SN Threshold FTonly: Signal-to-Noise ratio below which peaks are...
Definition cv.hpp:5673
MS_taxonomy__NCBI_TaxID
taxonomy: NCBI TaxID: This term is used if a NCBI TaxID is specified, e.g. 9606 for Homo sapiens.
Definition cv.hpp:4797
UNIMOD_Xlink_DSS_156_
Xlink:DSS[156]: Water-quenched monolink of DSS/BS3 crosslinker.
Definition cv.hpp:11331
MS_high_energy_collision_OBSOLETE
high energy collision: Collision-induced dissociation process wherein the projectile ion has laborato...
Definition cv.hpp:1836
MS_ion_kinetic_energy_spectrometry_OBSOLETE
ion kinetic energy spectrometry: A method of analysis in which a beam of ions is separated according ...
Definition cv.hpp:1254
MS_Negative_Ion_chemical_ionization
Negative Ion chemical ionization: Chemical ionization that results in the formation of negative ions.
Definition cv.hpp:1323
UNIMOD_Ala__Phe
Ala->Phe: Ala->Phe substitution.
Definition cv.hpp:11391
MS_spectrum_subsumable_protein
spectrum subsumable protein: A spectrum same-set or spectrum sub-set protein where the matches are di...
Definition cv.hpp:5211
UNIMOD_15N_oxobutanoic
15N-oxobutanoic: Loss of ammonia (15N).
Definition cv.hpp:12348
UNIMOD_Asn__Thr
Asn->Thr: Asn->Thr substitution.
Definition cv.hpp:10605
UNIMOD_Ser__Cys
Ser->Cys: Ser->Cys substitution.
Definition cv.hpp:10716
MS_selected_reaction_monitoring_chromatogram
selected reaction monitoring chromatogram: Chromatogram created by creating an array of the measureme...
Definition cv.hpp:4818
UNIMOD_Delta_H_1_N__1_18O_1_
Delta:H(1)N(-1)18O(1): Glycosylated asparagine 18O labeling.
Definition cv.hpp:9714
MS_database_UniProtKB_Swiss_Prot
database UniProtKB/Swiss-Prot: The name of the UniProtKB/Swiss-Prot knowledgebase.
Definition cv.hpp:3771
UNIMOD_Ser__Glu
Ser->Glu: Ser->Glu substitution.
Definition cv.hpp:11844
MS_param__b_ion_NH3_DEPRECATED
param: b ion-NH3 DEPRECATED: Ion b-NH3 parameter information, type of product: b ion with lost ammoni...
Definition cv.hpp:3906
MS_H2O_neutral_loss_OBSOLETE
H2O neutral loss: Neutral loss of water.
Definition cv.hpp:7815
UO_nanometer
nanometer: A length unit which is equal to one thousandth of one millionth of a meter or 10^[-9] m.
Definition cv.hpp:13857
MS_ProteomeDiscoverer_Absolute_XCorr_Threshold
ProteomeDiscoverer:Absolute XCorr Threshold: Minimum cross-correlation threshold that determines whet...
Definition cv.hpp:5418
UNIMOD_HCysThiolactone
HCysThiolactone: N-Homocysteine thiolactone.
Definition cv.hpp:12051
MS_ion_series_considered_in_search
ion series considered in search: The description of the ion fragment series (including charges and ne...
Definition cv.hpp:7869
MS_contact_address
contact address: Postal address of the contact person or organization.
Definition cv.hpp:2412
MS_Voyager_Biospectrometry_Workstation_System
Voyager Biospectrometry Workstation System: Applied Biosystems MALDI-TOF data acquisition and analysi...
Definition cv.hpp:2226
MS_instrument_vendor
instrument vendor: Instrument vendor role.
Definition cv.hpp:4227
UO_curie
curie: An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioacti...
Definition cv.hpp:14199
MS_photodissociation
photodissociation: A process wherein the reactant ion is dissociated as a result of absorption of one...
Definition cv.hpp:1881
MS_ProteomeCentral_dataset_URI
ProteomeCentral dataset URI: URI associated to one PX submission in ProteomeCentral.
Definition cv.hpp:8964
UNIMOD_Methyl_Acetyl_2H_3_
Methyl+Acetyl:2H(3): Mono-methylated lysine labelled with Acetyl_heavy.
Definition cv.hpp:10929
MS_MSDK
MSDK: Mass Spectrometry Development Kit (MSDK) is a Java library of algorithms for processing of mass...
Definition cv.hpp:8391
MS_buffer_gas
buffer gas: An inert gas used for collisional deactivation of internally excited ions.
Definition cv.hpp:1809
UO_acre
acre: An area unit which is equivalent to 1 furlong x 1 chain. This is equal to an area of 4,...
Definition cv.hpp:14868
UNIMOD_HexNAc_2_dHex_1_
HexNAc(2)dHex(1): HexNAc2dHex1.
Definition cv.hpp:9666
MS_ProteoWizard_chainsaw
ProteoWizard chainsaw: Filters and processes protein sequence databases.
Definition cv.hpp:7068
MS_positive_ion_OBSOLETE
positive ion: An atomic or molecular species having a net positive electric charge.
Definition cv.hpp:1695
UNIMOD_UgiJoullieProGlyProGly
UgiJoullieProGlyProGly: Side reaction of PGPG with Side chain of aspartic or glutamic acid.
Definition cv.hpp:12075
UNIMOD_Cy3_maleimide
Cy3-maleimide: Cy3 Maleimide mono-Reactive dye.
Definition cv.hpp:12198
MS_stable_ion_OBSOLETE
stable ion: An ion with internal energy sufficiently low that it does not rearrange or dissociate pri...
Definition cv.hpp:1707
UNIMOD_Cys__Glu
Cys->Glu: Cys->Glu substitution.
Definition cv.hpp:11427
MS_dimeric_ion_OBSOLETE
dimeric ion: An ion formed by ionization of a dimer or by the association of an ion with its neutral ...
Definition cv.hpp:1656
UNIMOD_Lys__Glu
Lys->Glu: Lys->Glu substitution.
Definition cv.hpp:10545
MS_spectrum_from_ProteinScape_database_nativeID_format
spectrum from ProteinScape database nativeID format: Native format defined by databasekey=xsd:long.
Definition cv.hpp:4998
MS_molecular_formula
molecular formula: A chemical compound formula expressing the number of atoms of each element present...
Definition cv.hpp:3300
MS_protein_value__sum_of_peptide_values
protein value: sum of peptide values: Protein quantification value calculated as sum of peptide value...
Definition cv.hpp:5967
UNIMOD_Biotin_PEG_PRA
Biotin-PEG-PRA: Biotin polyethyleneoxide (n=3) alkyne.
Definition cv.hpp:11070
MS_PASSEL_experiment_URI
PASSEL experiment URI: URI that allows access to a PASSEL experiment.
Definition cv.hpp:7710
MS_median_of_spectra
median of spectra: Spectra is combined by calculating the median of the spectra.
Definition cv.hpp:2328
MS_nitrogen_rule_OBSOLETE
nitrogen rule: An organic molecule containing the elements C, H, O, S, P, or halogen has an odd nomin...
Definition cv.hpp:1083
UNIMOD_dHex_2_Hex_1_HexNAc_3_
dHex(2)Hex(1)HexNAc(3): DHex(2) Hex HexNAc(3).
Definition cv.hpp:12972
UNIMOD_iodoTMT6plex
iodoTMT6plex: Sixplex iodoacetyl Tandem Mass Tag®.
Definition cv.hpp:12189
UO_milligram_per_kilogram_per_day
milligram per kilogram per day: A dosage unit which is equal to 1 milligram per day of a toxic or pha...
Definition cv.hpp:14730
MS_contact_toll_free_phone_number
contact toll-free phone number: Toll-free phone number of the contact person or organization.
Definition cv.hpp:5685
UNIMOD_Tween20
Tween20: Tween 20 synthetic polymer terminus.
Definition cv.hpp:13449
MS_TopMG_proteoform_graph_gap_size
TopMG:proteoform graph gap size: Gap size in constructing proteoform graph.
Definition cv.hpp:9261
UNIMOD_Dethiomethyl
Dethiomethyl: Prompt loss of side chain from oxidised Met.
Definition cv.hpp:10359
UNIMOD_Hex_1_HexNAc_1_NeuGc_1_
Hex(1)HexNAc(1)NeuGc(1): Hex HexNAc NeuGc.
Definition cv.hpp:12774
MS_Scaffold_Protein_Probability
Scaffold:Protein Probability: Scaffold protein probability score.
Definition cv.hpp:5136
MS_autodetachment
autodetachment: The formation of a neutral when a negative ion in a discrete state with an energy gre...
Definition cv.hpp:1722
UO_milliliter
milliliter: A volume unit which is equal to one thousandth of a liter or 10^[-3] L,...
Definition cv.hpp:14097
UO_deci
deci: A prefix in the metric system denoting a factor of one tenth.
Definition cv.hpp:14685
MS_thomson
thomson (m/z): Three-character symbol m/z is used to denote the quantity formed by dividing the mass ...
Definition cv.hpp:393
MS_ProteomeDiscoverer_Amanda_high_confidence_threshold
ProteomeDiscoverer:Amanda:high confidence threshold: Strict confidence probability score.
Definition cv.hpp:7398
MS_TopMG_spectral_cutoff_value
TopMG:spectral cutoff value: Spectrum-level cutoff value for filtering identified proteoform spectrum...
Definition cv.hpp:9243
MS_label_free_peptide_level_quantitation
label-free peptide level quantitation: Label-free peptide level quantitation.
Definition cv.hpp:6504
UNIMOD_Asn__Met
Asn->Met: Asn->Met substitution.
Definition cv.hpp:11733
UNIMOD_spermidine
spermidine: Spermidine adduct.
Definition cv.hpp:12354
MS_counts_reporting
counts reporting: FeatureList of spectral counts.
Definition cv.hpp:6813
MS_collisional_cross_sectional_area
collisional cross sectional area: Structural molecular descriptor for the effective interaction area ...
Definition cv.hpp:9285
MS_Conversion_to_dta
Conversion to dta: Conversion to dta format.
Definition cv.hpp:2892
MS_ProteomeDiscoverer_1__Dynamic_Modification_OBSOLETE
ProteomeDiscoverer:1. Dynamic Modification: ProteomeDiscoverer's 1st dynamic post-translational modif...
Definition cv.hpp:5574
MS_MaxQuant_MS_MS_count
MaxQuant:MS/MS count: The data type MS2 count produced by MaxQuant.
Definition cv.hpp:6126
MS_IsoProbe_T
IsoProbe T: Waters IsoProbe T MS.
Definition cv.hpp:864
MS_TMT_reagent
TMT reagent: Tandem mass tag reagent used in TMT, glycoTMT, iodoTMT, aminoxyTMT or hydrazideTMT isoba...
Definition cv.hpp:8298
MS_Compass
Compass: Bruker Compass software.
Definition cv.hpp:2805
MS_Element_GD
Element GD: Thermo Scientific Element GD Glow Discharge MS.
Definition cv.hpp:2613
UNIMOD_Hex_7_HexNAc_4_
Hex(7)HexNAc(4): Hex(7) HexNAc(4).
Definition cv.hpp:12732
MS_TOPP_AdditiveSeries
TOPP AdditiveSeries: Computes an additive series to quantify a peptide in a set of samples.
Definition cv.hpp:6933
UNIMOD_SulfoGMBS
SulfoGMBS: High molecular absorption label for proteins.
Definition cv.hpp:11166
UNIMOD_Hex_2_HexNAc_2_NeuAc_1_
Hex(2)HexNAc(2)NeuAc(1): Hex(2) HexNAc(2) NeuAc —OR— dHex Hex HexNAc(2) NeuGc.
Definition cv.hpp:12435
MS_quality_estimation_by_manual_validation
quality estimation by manual validation: The quality estimation was done manually.
Definition cv.hpp:3657
MS_IdentityE_XML_format
IdentityE XML format: Source file for this mzIdentML was in Waters IdentityE XML format.
Definition cv.hpp:5094
MS_isolation_window_upper_limit_OBSOLETE
isolation window upper limit: The highest m/z being isolated in an isolation window.
Definition cv.hpp:3066
UNIMOD_Xlink_DST_132_
Xlink:DST[132]: Water quenched monolink of DST crosslinker.
Definition cv.hpp:11337
MS_peptide_sequence_level_local_FDR
peptide sequence-level local FDR: Estimation of the local false discovery rate for distinct peptides ...
Definition cv.hpp:7527
MS_laser_type
laser type: Type of laser used for desorption purpose.
Definition cv.hpp:3222
MS_PROTEINEER_spII
PROTEINEER spII: Bruker PROTEINEER spII software.
Definition cv.hpp:2865
MS_proteoform_level_identification_attribute
proteoform-level identification attribute: Proteoform level information.
Definition cv.hpp:9135
MS_search_engine_input_parameter
search engine input parameter: Search engine input parameter.
Definition cv.hpp:6729
MS_Mascot_ProteinGrouping
Mascot:ProteinGrouping: Strategy used by Mascot to group proteins with same peptide matches (one of '...
Definition cv.hpp:5691
MS_focus_diameter_y
focus diameter y: Describes the diameter of the laser beam in y direction.
Definition cv.hpp:3231
UNIMOD_Cys__ethylaminoAla
Cys->ethylaminoAla: Carbamidomethylated Cys that undergoes beta-elimination and Michael addition of e...
Definition cv.hpp:11160
UNIMOD_OxProBiotinRed
OxProBiotinRed: Oxidized proline biotinylated with biotin-LC-hydrazide, reduced.
Definition cv.hpp:9582
MS_ProteomeDiscoverer_SEQUEST_FT_High_Confidence_XCorr_Charge3
ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge3: FT high confidence XCorr parameter for c...
Definition cv.hpp:5556
MS_Discrete_Mass_Spectrum
Discrete Mass Spectrum (centroid spectrum): Processing of profile data to produce spectra that contai...
Definition cv.hpp:723
MS_liquid_secondary_ionization
liquid secondary ionization: The ionization of any species by the interaction of a focused beam of io...
Definition cv.hpp:1755
MS_ANOVA_p_value
ANOVA p-value: Global datatype: p-value of ANOVA of group means (e.g. Progenesis).
Definition cv.hpp:5976
UNIMOD_Xlink_SMCC_237_
Xlink:SMCC[237]: Water quenched monolink of SMCC.
Definition cv.hpp:11343
MS_TSQ_Quantum
TSQ Quantum: ThermoFinnigan TSQ Quantum MS.
Definition cv.hpp:963
MS_search_tolerance_minus_value
search tolerance minus value:
Definition cv.hpp:4638
PEFF_VariantComplex
VariantComplex: Simple sequence variation of a single amino acid change. A change to a stop codon is ...
Definition cv.hpp:261
MS_atmospheric_pressure_ionization
atmospheric pressure ionization: Any ionization process in which ions are formed in the gas phase at ...
Definition cv.hpp:1134
MS_single_identification_result_attribute
single identification result attribute: Attribute of a single identification item (as opposed to a li...
Definition cv.hpp:8541
MS_database_sequence_details
database sequence details: Details about a single database sequence.
Definition cv.hpp:4434
MS_electron_affinity_OBSOLETE
electron affinity: The electron affinity of M is the minimum energy required for the process M- ?...
Definition cv.hpp:1020
MS_flowing_afterglow
flowing afterglow: An ion source immersed in a flow of helium or other inert buffer gas that carries ...
Definition cv.hpp:1224
MS_amaZon_X
amaZon X: Bruker Daltonics' amaZon X: ESI quadrupole ion trap, APCI, APPI, ETD, PTR.
Definition cv.hpp:5043
MS_Vs_cm_2
Vs/cm^2 (volt-second per square centimeter): An electrical mobility unit that equals the speed [cm/s]...
Definition cv.hpp:8865
MS_transmission
transmission: The ratio of the number of ions leaving a region of a mass spectrometer to the number e...
Definition cv.hpp:1113
MS_number_of_precursor_ion_observations
number of precursor ion observations: The number of times the specific precursor ion has been observe...
Definition cv.hpp:7131
MS_below_precursor_intensity_dominance_charge_state_calculation
below precursor intensity dominance charge state calculation: Infers charge state as single or ambigu...
Definition cv.hpp:3009
MS_jPOST_dataset_URI
jPOST dataset URI: URI that allows the access to one dataset in the jPOST repository....
Definition cv.hpp:8355
MS_Mascot_C13_counts
Mascot:C13 counts: C13 peaks to use in peak detection.
Definition cv.hpp:6309
MS_Trapper
Trapper: A software program for converting Agilent MassHunter format to mzXML or mzML....
Definition cv.hpp:2268
MS_protein_group_level_FDRScore
protein group-level FDRScore: mzidLibrary FDRScore for protein groups.
Definition cv.hpp:7572
MS_absolute_quantity
absolute quantity: Absolute quantity in terms of real concentration or molecule copy number in sample...
Definition cv.hpp:3870
MS_database_type_amino_acid
database type amino acid: Database contains amino acid sequences.
Definition cv.hpp:3693
MS_ProteomeDiscoverer_Xtract_Required_Fitting_Accuracy
ProteomeDiscoverer:Xtract:Required Fitting Accuracy: Accuracy required for a pattern fit to be consid...
Definition cv.hpp:5331
MS_phosphoRS_site_probability
phosphoRS site probability: Estimate of the probability that the respective site is truly phosphoryla...
Definition cv.hpp:6336
UNIMOD_Trp__Glu
Trp->Glu: Trp->Glu substitution.
Definition cv.hpp:11931
MS_charge_induced_fragmentation_OBSOLETE
charge-induced fragmentation: Fragmentation of an odd electron ion in which the cleaved bond is adjac...
Definition cv.hpp:1812
UNIMOD_HNE_BAHAH
HNE-BAHAH: 4-hydroxy-2-nonenal and biotinamidohexanoic acid hydrazide, reduced.
Definition cv.hpp:11115
UNIMOD_HexNAc_2_Sulf_1_
HexNAc(2)Sulf(1): HexNAc(2) Sulf.
Definition cv.hpp:13644
UO_dynamic_range_unit
dynamic range unit: An image resolution unit which is a standard measure of the amount of contrast av...
Definition cv.hpp:14511
MS_SCIEX_TOF_TOF_Series_Explorer_Software
SCIEX TOF/TOF Series Explorer Software: SCIEX or Applied Biosystems software for TOF/TOF data acquisi...
Definition cv.hpp:4854
MS_eight_sample_run
eight sample run: The raw file contains the run of eight samples (e.g. 8-plex iTraq).
Definition cv.hpp:5880
UNIMOD_Gly__Asp
Gly->Asp: Gly->Asp substitution.
Definition cv.hpp:10506
UNIMOD_Hex_3_HexNAc_5_NeuAc_1_
Hex(3)HexNAc(5)NeuAc(1): Hex(3) HexNAc(5) NeuAc(1).
Definition cv.hpp:13725
UNIMOD_Hex_5_HexNAc_4_NeuAc_1_Sulf_1_
Hex(5)HexNAc(4)NeuAc(1)Sulf(1): Hex(5) HexNAc(4) NeuAc Sulf.
Definition cv.hpp:12765
UO_meter_per_second
meter per second: A speed/velocity unit which is equal to the speed of an object traveling 1 meter di...
Definition cv.hpp:14085
UO_second
second: A time unit which is equal to the duration of 9 192 631 770 periods of the radiation correspo...
Definition cv.hpp:13833
MS_Dataset_FTP_location
Dataset FTP location: FTP location of one entire PX data set.
Definition cv.hpp:8979
UNIMOD_Delta_O_4_
Delta:O(4): Tryptophan oxidation to dihydroxy-N-formaylkynurenine.
Definition cv.hpp:13617
MS_MIDAS_Workflow_Designer
MIDAS Workflow Designer: Applied Biosystems|MDS SCIEX software for MRM assay development.
Definition cv.hpp:2688
UNIMOD_Xlink_DSSO_54_
Xlink:DSSO[54]: Alkene fragment of DSSO crosslinker.
Definition cv.hpp:13518
MS_m_z_Separation_Method_OBSOLETE
m/z Separation Method: Mass/charge separation Method.
Definition cv.hpp:1914
MS_decoy_DB_from_IPI_arabidopsis_OBSOLETE
decoy DB from IPI_arabidopsis: Decoy database from a International Protein Index database for Arabido...
Definition cv.hpp:4284
MS_retention_time_window_lower_offset
retention time window lower offset: The extent of the retention time window in time units below the t...
Definition cv.hpp:3456
UNIMOD_dHex_1_Hex_3_HexA_1_HexNAc_1_
dHex(1)Hex(3)HexA(1)HexNAc(1): DHex Hex(3) HexA HexNAc.
Definition cv.hpp:12939
MS_Progenesis_confidence_score
Progenesis:confidence score: The data type confidence score produced by Progenesis LC-MS.
Definition cv.hpp:6096
MS_surface_assisted_laser_desorption_ionization
surface-assisted laser desorption ionization: The formation of gas-phase ions from molecules that are...
Definition cv.hpp:1788
UNIMOD_Xlink_SMCC_219_
Xlink:SMCC[219]: Intact SMCC cross-link.
Definition cv.hpp:13563
UNIMOD_Met__Hse
Met->Hse: Homoserine.
Definition cv.hpp:9399
MS_analog_ion_OBSOLETE
analog ion: Ions that have similar chemical valence, for example the acetyl cation CH3-CO+ and the th...
Definition cv.hpp:1638
MS_target_inclusion_exclusion_priority
target inclusion exclusion priority: A priority setting specifying whether included or excluded targe...
Definition cv.hpp:3465
MS_DiART_reagent
DiART reagent: Deuterium isobaric amine reactive tag labeling reagent.
Definition cv.hpp:8733
UO_temperature_unit
temperature unit: A unit which is a standard measure of the average kinetic energy of the particles i...
Definition cv.hpp:13818
MS_SPS
SPS (synchronous prefilter selection): Synchronous prefilter selection.
Definition cv.hpp:8037
MS_protein_group_passes_threshold
protein group passes threshold: A Boolean attribute to determine whether the protein group has passed...
Definition cv.hpp:7695
MS_frag__x_ion___H2O
frag: x ion - H2O: Fragmentation information, type of product: x ion without water.
Definition cv.hpp:4962
UNIMOD_dHex_2_Hex_3_HexNAc_1_Sulf_1_
dHex(2)Hex(3)HexNAc(1)Sulf(1): DHex(2) Hex(3) HexNAc Sulf.
Definition cv.hpp:12966
MS_ProteomeDiscoverer_Search_Against_Decoy_Database_OBSOLETE
ProteomeDiscoverer:Search Against Decoy Database: Determines whether the Proteome Discoverer applicat...
Definition cv.hpp:5460
MS_source
source: Terms to describe the source.
Definition cv.hpp:1968
MS_sample_volume
sample volume: Total volume of solution used.
Definition cv.hpp:276
MS_Phenyx_PepPvalue
Phenyx:PepPvalue: The p-value of a peptide sequence match in Phenyx.
Definition cv.hpp:4596
MS_peak
peak: A localized region of relatively large ion signal in a mass spectrum. Although peaks are often ...
Definition cv.hpp:1092
UNIMOD_Aspartylurea
Aspartylurea: Aspartylurea.
Definition cv.hpp:13596
MS_time_lag_focusing
time lag focusing: Energy focusing in a time-of-flight mass spectrometer that is accomplished by intr...
Definition cv.hpp:1413
MS_Xevo_G2_S_QTof
Xevo G2-S QTof: Waters oa-ToF based Xevo G2-S QTof.
Definition cv.hpp:7275
MS_group_member_with_undefined_relationship_OR_ortholog_protein
group member with undefined relationship OR ortholog protein: TO ENDETAIL: a really generic relations...
Definition cv.hpp:5193
MS_laser_desorption_ionization
laser desorption ionization: The formation of gas-phase ions by the interaction of a pulsed laser wit...
Definition cv.hpp:1752
MS_secondary_electron_OBSOLETE
secondary electron: Electrons that are ejected from a sample surface as a result of bombardment by a ...
Definition cv.hpp:1629
UO_chain
chain: A length unit which is equal to 20.1168 metres, 66 feet, or 22 yards.
Definition cv.hpp:14838
UNIMOD_Phe__Trp
Phe->Trp: Phe->Trp substitution.
Definition cv.hpp:11562
UNIMOD_Phe__Ala
Phe->Ala: Phe->Ala substitution.
Definition cv.hpp:11526
MS_PeptideShaker_protein_group_confidence
PeptideShaker protein group confidence: The probability based PeptideShaker protein group confidence.
Definition cv.hpp:7863
UNIMOD_Methylpyrroline
Methylpyrroline: 4-methyl-delta-1-pyrroline-5-carboxyl.
Definition cv.hpp:10209
MS_parent_mass_type_average
parent mass type average: Mass type setting for parent mass was average isotopic.
Definition cv.hpp:4065
MS_minute_OBSOLETE
minute: Acquisition time in minutes.
Definition cv.hpp:378
MS_Libra
Libra: A program in the TPP that calculates PSM, peptide, and protein-level abundances based on N-cha...
Definition cv.hpp:7323
MS_PIA_used_top_identifications_for_FDR
PIA:used top identifications for FDR: The number of top identifications per spectrum used for the FDR...
Definition cv.hpp:7629
UNIMOD_2_succinyl
2-succinyl: S-(2-succinyl) cysteine.
Definition cv.hpp:11208
UNIMOD_Glu__Gln
Glu->Gln: Glu->Gln substitution.
Definition cv.hpp:10461
MS_in_source_collision_induced_dissociation
in-source collision-induced dissociation: The dissociation of an ion as a result of collisional excit...
Definition cv.hpp:6054
UNIMOD_His__Cys
His->Cys: His->Cys substitution.
Definition cv.hpp:11598
MS_protein_description
protein description: The protein description line from the sequence entry in the source database FAST...
Definition cv.hpp:3723
UNIMOD_PyruvicAcidIminyl
PyruvicAcidIminyl: N-pyruvic acid 2-iminyl.
Definition cv.hpp:10176
MS_dpControl
dpControl: Bruker software for data acquisition.
Definition cv.hpp:2829
UNIMOD_Pyro_carbamidomethyl
Pyro-carbamidomethyl: S-carbamoylmethylcysteine cyclization (N-terminus).
Definition cv.hpp:9429
MS_transition_optimized_on_specified_instrument
transition optimized on specified instrument: The transition has been optimized by direct injection o...
Definition cv.hpp:3438
UNIMOD_Delta_H_10_C_8_O_1_
Delta:H(10)C(8)O(1): Crotonaldehyde-derived dimethyl-FDP-lysine.
Definition cv.hpp:13626
MS_decoy_SRM_transition
decoy SRM transition: A transition not expected to be present in the sample and used to calculate sta...
Definition cv.hpp:6462
MS_SYNAPT_G2_Si
SYNAPT G2-Si: Waters Corporation SYNAPT G2-Si orthogonal acceleration time-of-flight mass spectromete...
Definition cv.hpp:8598
MS_magnetic_field_strength
magnetic field strength: A property of space that produces a force on a charged particle equal to qv ...
Definition cv.hpp:336
MS_param__z_ion
param: z ion: Parameter information, type of product: z ion with charge on the C-terminal side.
Definition cv.hpp:4215
UNIMOD_dHex_1_Hex_7_HexNAc_4_
dHex(1)Hex(7)HexNAc(4): Fucosylated biantennary + 2 alphaGal.
Definition cv.hpp:13467
UNIMOD_Lys__Tyr
Lys->Tyr: Lys->Tyr substitution.
Definition cv.hpp:11676
MS_transition_predicted_by_informatic_analysis
transition predicted by informatic analysis: The transition has been predicted by informatics softwar...
Definition cv.hpp:3447
UO_hertz
hertz: A frequency unit which is equal to 1 complete cycle of a recurring phenomenon in 1 second.
Definition cv.hpp:14121
UO_hectare
hectare: An area unit which is equal to an area of 10,000 square meters. Equivalent to 2....
Definition cv.hpp:14823
MS_TOPP_Decharger
TOPP Decharger: Decharges and merges different feature charge variants of the same chemical entity.
Definition cv.hpp:6936
MS_Byonic__Protein_AbsLogProb
Byonic: Protein AbsLogProb: The absolute value of the log-base10 of the Byonic posterior error probab...
Definition cv.hpp:7380
MS_HyStar
HyStar: Bruker software for hyphenated experiments.
Definition cv.hpp:3150
MS_TRITON
TRITON: ThermoFinnigan TRITON MS.
Definition cv.hpp:960
MS_ProteinExtractor_MaxProteinMass
ProteinExtractor:MaxProteinMass: The maximum considered mass for a protein.
Definition cv.hpp:4683
UNIMOD_Lys__Xle
Lys->Xle: Lys->Leu/Ile substitution.
Definition cv.hpp:10557
UNIMOD_Oxidation_NEM
Oxidation+NEM: N-ethylmaleimide on cysteine sulfenic acid.
Definition cv.hpp:12282
UNIMOD_dHex_1_Hex_2_HexNAc_1_NeuAc_2_
dHex(1)Hex(2)HexNAc(1)NeuAc(2): DHex Hex(2) HexNAc NeuAc(2).
Definition cv.hpp:13689
UO_electric_potential_difference_unit
electric potential difference unit: A unit which is a standard measure of the work done per unit char...
Definition cv.hpp:14448
MS_Bruker_Daltonics_SCION_series
Bruker Daltonics SCION series: Bruker Daltonics' SCION series.
Definition cv.hpp:7329
UNIMOD_Palmitoleyl
Palmitoleyl: Palmitoleyl.
Definition cv.hpp:10197
MS_reflectron_off
reflectron off: Reflectron is off.
Definition cv.hpp:633
MS_normalized_retention_time
normalized retention time: A time interval from the start of chromatography when an analyte exits a s...
Definition cv.hpp:3393
UNIMOD_Lys__Cys
Lys->Cys: Lys->Cys substitution.
Definition cv.hpp:11649
UO_steradian
steradian: A solid angle unit which is equal to the solid angle subtended at the center of a sphere b...
Definition cv.hpp:14178
MS_alternate_mass
alternate mass: List of masses a non-standard letter code is replaced with.
Definition cv.hpp:4491
PEFF_EV
EV: Entry version.
Definition cv.hpp:198
MS_MS_GF_QValue
MS-GF:QValue: MS-GF Q-value.
Definition cv.hpp:6612
UNIMOD_Bromobimane
Bromobimane: Monobromobimane derivative.
Definition cv.hpp:9900
UO_information_unit
information unit: A unit which is a standard measure of the amount of information.
Definition cv.hpp:14490
UNIMOD_dHex_1_Hex_7_HexNAc_3_
dHex(1)Hex(7)HexNAc(3): DHex Hex(7) HexNAc(3).
Definition cv.hpp:12696
UNIMOD_Met__Glu
Met->Glu: Met->Glu substitution.
Definition cv.hpp:11688
MS_chemical_ionization
chemical ionization: The formation of a new ion by the reaction of a neutral species with an ion....
Definition cv.hpp:495
MS_Orbitrap_Fusion
Orbitrap Fusion: Thermo Scientific Orbitrap Fusion.
Definition cv.hpp:7698
MS_error_on_peptide_ratio
error on peptide ratio: Error on peptide ratio.
Definition cv.hpp:3858
MS_protein_group_attribute
protein group attribute: Attribute describing a protein group.
Definition cv.hpp:6786
UNIMOD_Pro__HAVA
Pro->HAVA: Proline oxidation to 5-hydroxy-2-aminovaleric acid.
Definition cv.hpp:13608
MS_soft_ionization
soft ionization: The formation of gas-phase ions without extensive fragmentation.
Definition cv.hpp:1782
UNIMOD_Delta_H_4_C_5_O_1_
Delta:H(4)C(5)O(1): Methylglyoxal-derived argpyrimidine.
Definition cv.hpp:13623
UNIMOD_Gln__Phe
Gln->Phe: Gln->Phe substitution.
Definition cv.hpp:11793
UNIMOD_Ser__Thr
Ser->Thr: Ser->Thr substitution.
Definition cv.hpp:10704
UNIMOD_Asn__His
Asn->His: Asn->His substitution.
Definition cv.hpp:10614
MS_Comet_deltacn
Comet:deltacn: The Comet result 'DeltaCn'.
Definition cv.hpp:7206
MS_matrix_solution
matrix solution: Describes the chemical solution used as matrix.
Definition cv.hpp:3198
UO_ampere
ampere: An electric current unit which is equal to the constant current which, if maintained in two s...
Definition cv.hpp:13836
MS_TOPP_HighResPrecursorMassCorrector
TOPP HighResPrecursorMassCorrector: Performs precursor mz correction on centroided high resolution da...
Definition cv.hpp:6930
MS_interaction_score_derived_from_cross_linking
interaction score derived from cross-linking: Parent term for interaction scores derived from cross-l...
Definition cv.hpp:8451
MS_SRM
SRM (selected reaction monitoring): Data acquired from specific product ions corresponding to m/z sel...
Definition cv.hpp:993
MS_detector_attribute
detector attribute: Detector attribute recognized as a value.
Definition cv.hpp:2043
MS_Asp_N_ambic
Asp-N_ambic: Enzyme Asp-N, Ammonium Bicarbonate (AmBic).
Definition cv.hpp:4323
UO_radiation_unit
radiation unit: A unit which is a standard measure of the amount of radiation emitted by a given radi...
Definition cv.hpp:14181
MS_sandwich_MALDI_sample_preparation
sandwich MALDI sample preparation: Sandwich MALDI sample preparation method.
Definition cv.hpp:6402
UNIMOD_HexNAc_4_
HexNAc(4): HexNAc(4).
Definition cv.hpp:12849
MS_mzML_unique_identifier
mzML unique identifier: Native format defined by mzMLid=xsd:IDREF.
Definition cv.hpp:4995
MS_6545_Q_TOF_LC_MS
6545 Q-TOF LC/MS: The 6545 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrum...
Definition cv.hpp:8793
MS_time_digital_converter
time-digital converter: A device for converting a signal of sporadic pluses into a digital representa...
Definition cv.hpp:693
UNIMOD_Dimethyl_2H_4_
Dimethyl:2H(4): DiMethyl-CHD2.
Definition cv.hpp:9762
MS_baseline_reduction
baseline reduction: A process of removal of varying intensities generated due to variable energy abso...
Definition cv.hpp:2430
UNIMOD_Withaferin
Withaferin: Modification of cystein by withaferin.
Definition cv.hpp:11367
UNIMOD_Tyr__Dha
Tyr->Dha: Dehydroalanine (from Tyrosine).
Definition cv.hpp:10119
MS_ZCore_probScore
ZCore:probScore: The ZCore probability score.
Definition cv.hpp:6279
MS_collision_energy_ramp_start
collision energy ramp start: Collision energy at the start of the collision energy ramp.
Definition cv.hpp:6483
MS_product_ion_intensity
product ion intensity: The intensity of a single product ion.
Definition cv.hpp:4107
MS_ion_desolvation_OBSOLETE
ion desolvation: The removal of solvent molecules clustered around a gas-phase ion by means of heatin...
Definition cv.hpp:1743
MS_daly_detector
daly detector: Detector consisting of a conversion dynode, scintillator and photomultiplier....
Definition cv.hpp:651
MS_Paragon_unused_protscore
Paragon:unused protscore: The Paragon result 'Unused ProtScore'.
Definition cv.hpp:3951
MS_ProteomeDiscoverer_Organism_OBSOLETE
ProteomeDiscoverer:Organism: Sample organism (used for annotation purposes).
Definition cv.hpp:5616
UNIMOD_Hex_2_Pent_2_
Hex(2)Pent(2): Hex(2) Pent(2).
Definition cv.hpp:13650
UNIMOD_Ethanedithiol
Ethanedithiol: EDT.
Definition cv.hpp:9765
MS_number_of_peaks_submitted
number of peaks submitted: The number of peaks from the original peaks listed that were submitted to ...
Definition cv.hpp:3831
UNIMOD_ICDID
ICDID: Isotope-Coded Dimedone light form.
Definition cv.hpp:11325
UNIMOD_Met__Trp
Met->Trp: Met->Trp substitution.
Definition cv.hpp:11712
UO_megaHertz
megaHertz: A frequency unit which is equal to one million hertz or 10^[6] V.
Definition cv.hpp:14772
MS_Lys_C_P
Lys-C/P: Proteinase Lys-C/P.
Definition cv.hpp:4341
MS_SEQUEST_probability
SEQUEST:probability: The SEQUEST result 'Probability'.
Definition cv.hpp:3921
UNIMOD_CIGG
CIGG: Ubiquitin D (FAT10) leaving after chymotrypsin digestion Cys-Ile-Gly-Gly.
Definition cv.hpp:13791
UNIMOD_Arg__GluSA
Arg->GluSA: Arginine oxidation to glutamic semialdehyde.
Definition cv.hpp:9987
MS_PSM_level_attribute
PSM-level attribute: Attribute of a single peptide-spectrum match.
Definition cv.hpp:7485
MS_Mascot_IncludeErrorTolerantMatches
Mascot:IncludeErrorTolerantMatches: If true, then the search results are error tolerant and peptide m...
Definition cv.hpp:4383
MS_trap_type_collision_induced_dissociation
trap-type collision-induced dissociation: A collision-induced dissociation process that occurs in a t...
Definition cv.hpp:7866
MS_distinct_peptide_sequences
distinct peptide sequences: This counts distinct sequences hitting the protein without regard to a mi...
Definition cv.hpp:3750
UNIMOD_Fluorescein_tyramine
Fluorescein-tyramine: Fluorescein-tyramine adduct by peroxidase activity.
Definition cv.hpp:13416
MS_Skyline_mzQuantML_converter
Skyline mzQuantML converter: A software package to convert Skyline report to mzQuantML.
Definition cv.hpp:8091
UO_energy_unit
energy unit: A unit which is a standard measure of the work done by a certain force (gravitational,...
Definition cv.hpp:14136
MS_Phenyx_Score
Phenyx:Score: The protein score of a protein match in Phenyx.
Definition cv.hpp:4578
MS_cross_linking_result_details
cross-linking result details: This subsection describes terms which can describe details of cross-lin...
Definition cv.hpp:8484
UO_parts_per_billion
parts per billion: A dimensionless concentration notation which denotes the amount of a given substan...
Definition cv.hpp:14307
UO_kilobyte
kilobyte: An information unit which is equal to 1000 bytes.
Definition cv.hpp:14499
MS_photodiode_array_detector
photodiode array detector: An array detector used to record spectra in the ultraviolet and visible re...
Definition cv.hpp:2526
UNIMOD_dHex_1_Hex_4_HexNAc_4_NeuAc_1_
dHex(1)Hex(4)HexNAc(4)NeuAc(1): DHex Hex(4) HexNAc(4) NeuAc —OR— Hex(3) HexNAc(5) dHex Kdn.
Definition cv.hpp:13389
MS_fragmentation_ion_type
fragmentation ion type: Type of fragment ion based on where the backbone breaks, such as a y ion or a...
Definition cv.hpp:7371
MS_PSM_level_FDRScore
PSM-level FDRScore: mzidLibrary FDRScore for peptide spectrum matches.
Definition cv.hpp:7515
UO_cubic_meter_per_kilogram
cubic meter per kilogram: A specific volume unit which is equal to one cubic meter volume occupied by...
Definition cv.hpp:14082
UNIMOD_Amidine
Amidine: Amidination of lysines or N-terminal amines with methyl acetimidate.
Definition cv.hpp:9648
MS_role_type
role type: Role of a Person or Organization.
Definition cv.hpp:4218
MS_peak_intensity
peak intensity: Intensity of ions as measured by the height or area of a peak in a mass spectrum.
Definition cv.hpp:402
UNIMOD_HexNAc_1_dHex_1_
HexNAc(1)dHex(1): HexNAc1dHex1.
Definition cv.hpp:9651
MS_PeptideAtlas_dataset_URI
PeptideAtlas dataset URI: URI that allows access to a PeptideAtlas dataset.
Definition cv.hpp:6540
MS_collision_energy_ramp_end
collision energy ramp end: Collision energy at the end of the collision energy ramp.
Definition cv.hpp:6486
MS_Bioworks
Bioworks: Thermo Finnigan software for data analysis of peptides and proteins.
Definition cv.hpp:2205
UNIMOD_MurNAc
MurNAc: N-Acetylmuramic acid.
Definition cv.hpp:12312
UNIMOD_Bacillosamine
Bacillosamine: 2,4-diacetamido-2,4,6-trideoxyglucopyranose.
Definition cv.hpp:11109
MS_UltroTOF_Q
UltroTOF-Q: Bruker Daltonics' UltroTOF-Q: ESI Q-TOF (MALDI optional).
Definition cv.hpp:5022
UNIMOD_dHex_1_HexNAc_4_
dHex(1)HexNAc(4): DHex HexNAc(4).
Definition cv.hpp:12912
UO_micromole_per_kilogram
micromole per kilogram: A specific concentration unit which is equal to 1 micromole of a given substa...
Definition cv.hpp:14805
MS_lowest_observed_wavelength
lowest observed wavelength: Lowest wavelength observed in an EMR spectrum.
Definition cv.hpp:2520
MS_ProLuCID_deltacn
ProLuCID:deltacn: The ProLuCID result 'DeltaCn'.
Definition cv.hpp:8058
UNIMOD_Met__Ala
Met->Ala: Met->Ala substitution.
Definition cv.hpp:11679
UNIMOD_dHex_1_Hex_2_HexNAc_2_Pent_1_
dHex(1)Hex(2)HexNAc(2)Pent(1): DHex Hex(2) HexNAc(2) Pent.
Definition cv.hpp:12432
MS_SEQUEST_TopNumber
SEQUEST:TopNumber: Specify "number" as value of the CVParam.
Definition cv.hpp:3777
UNIMOD_Trimethyl
Trimethyl: Tri-Methylation.
Definition cv.hpp:9456
MS_LightSight_Software
LightSight Software: SCIEX or Applied Biosystems|MDS SCIEX software metabolite identification.
Definition cv.hpp:2655
UNIMOD_dHex_1_Hex_5_HexNAc_4_Me_2_Pent_1_
dHex(1)Hex(5)HexNAc(4)Me(2)Pent(1): DHex Hex(5) HexNAc(4) Me(2) Pent.
Definition cv.hpp:12717
UNIMOD_Ser__Lys
Ser->Lys: Ser->Lys substitution.
Definition cv.hpp:11850
UNIMOD_Delta_H_2_C_2_
Delta:H(2)C(2): Acetaldehyde +26.
Definition cv.hpp:9801
MS_point_collector
point collector: A detector in which the ion beam is focused onto a point and the individual ions arr...
Definition cv.hpp:1623
MS_TopPIC_MIScore
TopPIC:MIScore: Modification identification score.
Definition cv.hpp:9219
MS_param__a_ion_H2O_DEPRECATED
param: a ion-H2O DEPRECATED: Ion a-H2O if a significant and fragment includes STED.
Definition cv.hpp:3903
MS_Phenyx_Instrument_Type
Phenyx:Instrument Type: The instrument type parameter value in Phenyx.
Definition cv.hpp:4533
MS_ProteomeDiscoverer_Peptide_Without_Protein_Cut_Off_Score
ProteomeDiscoverer:Peptide Without Protein Cut Off Score: Cut off score for storing peptides that do ...
Definition cv.hpp:7587
MS_param__w_ion
param: w ion: Parameter information, type of product: side chain loss w ion.
Definition cv.hpp:4206
UNIMOD_Didehydroretinylidene
Didehydroretinylidene: 3,4-didehydroretinylidene.
Definition cv.hpp:10203
MS_TOPP_MRMMapper
TOPP MRMMapper: MRMMapper maps measured chromatograms (mzML) and the transitions used (TraML).
Definition cv.hpp:7035
UNIMOD_Gln__Pro
Gln->Pro: Gln->Pro substitution.
Definition cv.hpp:10644
MS_Bruker_XML_format
Bruker XML format: Bruker data exchange XML format.
Definition cv.hpp:4170
MS_ProteomeDiscoverer_Number_of_input3_spectra
ProteomeDiscoverer:Number of input3 spectra: Number of spectra from 3+ precursor ions.
Definition cv.hpp:5604
UO_maritime_length_unit
maritime length unit: A maritime length unit is one used primarily at sea.
Definition cv.hpp:14850
UNIMOD_Carboxy
Carboxy: Carboxylation.
Definition cv.hpp:9897
MS_Progenesis_feature_intensity
Progenesis:feature intensity: The data type feature intensity produced by Progenesis LC-MS.
Definition cv.hpp:6102
UNIMOD_NO_SMX_SIMD
NO_SMX_SIMD: Nitroso Sulfamethoxazole Sulfinamide thiol adduct.
Definition cv.hpp:10896
MS_PTM_localization_single_result_statistic
PTM localization single result statistic: Statistic for a single item derived from a post-translation...
Definition cv.hpp:8526
UNIMOD_4AcAllylGal
4AcAllylGal: 2,3,4,6-tetra-O-Acetyl-1-allyl-alpha-D-galactopyranoside modification of cysteine.
Definition cv.hpp:11085
MS_decoy_DB_details
decoy DB details: Details of decoy generation and database structure.
Definition cv.hpp:4749
UNIMOD_His__Lys
His->Lys: His->Lys substitution.
Definition cv.hpp:11610
UO_coulomb
coulomb: An electrical charge unit which is equal to the amount of charge transferred by a current of...
Definition cv.hpp:14457
MS_number_of_sequences_searched
number of sequences searched: The number of sequences (proteins / nucleotides) from the database sear...
Definition cv.hpp:3585
MS_EIEIO_OBSOLETE
EIEIO (electron-induced excitation in organics): The reaction of an ion with an electron in which the...
Definition cv.hpp:1209
MS_AE_OBSOLETE
AE (appearance energy): The minimum energy that must be imparted to an atom or molecule to produce a ...
Definition cv.hpp:1005
MS_SEQUEST_sp
SEQUEST:sp: The SEQUEST result 'Sp' (protein).
Definition cv.hpp:3930
MS_ProteomeDiscoverer_Source_Files_OBSOLETE
ProteomeDiscoverer:Source Files: Input pepXML files.
Definition cv.hpp:5628
MS_increasing_m_z_scan
increasing m/z scan: Low to high direction in terms of m/z of the scan for scanning analyzers.
Definition cv.hpp:594
UNIMOD_IDEnT
IDEnT: Isotope Distribution Encoded Tag.
Definition cv.hpp:10911
MS_collisional_excitation_OBSOLETE
collisional excitation: The reaction of an ion with a neutral species in which the translational ener...
Definition cv.hpp:1827
MS_high_intensity_data_point_removal
high intensity data point removal: The removal of very high intensity data points.
Definition cv.hpp:2907
MS_WARP_LC
WARP-LC: Bruker WARP-LC software.
Definition cv.hpp:2886
PEFF_ModResUnimod
ModResUnimod: Modified residue with Unimod identifier.
Definition cv.hpp:255
MS_ionization_efficiency_OBSOLETE
ionization efficiency: The ratio of the number of ions formed to the number of electrons,...
Definition cv.hpp:1041
MS_instrument_configuration
instrument configuration (instrument): Description of the instrument or the mass spectrometer.
Definition cv.hpp:1986
MS_SILACAnalyzer
SILACAnalyzer: Software for SILAC workflow.
Definition cv.hpp:5907
UNIMOD_dHex_2_Hex_5_HexNAc_2_Me_1_
dHex(2)Hex(5)HexNAc(2)Me(1): Me dHex(2) Hex(5) HexNAc(2).
Definition cv.hpp:13707
UO_picomolar
picomolar: A unit of molarity which is equal to 10^[-12] M.
Definition cv.hpp:14001
MS_two_dimensional_liquid_chromatography_with_fixed_modulation_time
two-dimensional liquid chromatography with fixed modulation time: Two-dimensional liquid chromatograp...
Definition cv.hpp:6711
MS_ProteinProphet
ProteinProphet: A program in the TPP that calculates protein-level probabilities based on input PSM o...
Definition cv.hpp:7317
MS_UniProtKB_XML_sequence_format
UniProtKB XML sequence format: XML-based format used by UniProtKB for sequence entries.
Definition cv.hpp:8439
UNIMOD_SulfanilicAcid_13C_6_
SulfanilicAcid:13C(6): Heavy Sulfanilic Acid (SA) C13.
Definition cv.hpp:9867
MS_moving_belt
moving belt: Continuous moving surface in the form of a belt which passes through an ion source carry...
Definition cv.hpp:468
MS_convex_hull_baseline_reduction
convex hull baseline reduction: Constructs the baseline by fitting multiple parabolas to the spectrum...
Definition cv.hpp:6414
MS_label_free_protein_level_quantitation
label-free protein level quantitation: Label-free protein level quantitation.
Definition cv.hpp:6507
MS_modulation_time
modulation time: The duration of a complete cycle of modulation in a comprehensive two-dimensional se...
Definition cv.hpp:6573
MS_xiFDR
xiFDR: Target/Decoy based FDR estimation for cross-linking peptide-identifications.
Definition cv.hpp:8082
MS_inlet_attribute
inlet attribute: Inlet properties that are associated with a value.
Definition cv.hpp:6564
MS_ProteinExtractor_PhenyxPeptideScoreThreshold
ProteinExtractor:PhenyxPeptideScoreThreshold: Only peptides with scores higher than that threshold ar...
Definition cv.hpp:4731
MS_confidence_score
confidence score: Result of quality estimation: confidence score.
Definition cv.hpp:4014
MS_LIMSA
LIMSA: Software tool for the quantitative analysis of mass spectrometric lipidome data.
Definition cv.hpp:9357
MS_QTRAP_5500
QTRAP 5500: Applied Biosystems|MDS SCIEX QTRAP 5500.
Definition cv.hpp:3501
PWIZ_API_DECL const CVTermInfo & cvTermInfo(CVID cvid)
returns CV term info for the specified CVID
PWIZ_API_DECL bool cvIsA(CVID child, CVID parent)
returns true iff child IsA parent in the CV
PWIZ_API_DECL const std::vector< CVID > & cvids()
returns vector of all valid CVIDs
PWIZ_API_DECL const CV & cv(const std::string &prefix)
returns a CV object for the specified namespace (prefix); currently supported namespaces are: MS UO
Information about an ontology or CV source and a short 'lookup' tag to refer to.
Definition cv.hpp:14916
bool operator==(const CV &that) const
returns true iff id, URI, fullName, and version are all pairwise equal
std::string id
the short label to be used as a reference tag with which to refer to this particular Controlled Vocab...
Definition cv.hpp:14918
std::string fullName
the usual name for the resource (e.g. The PSI-MS Controlled Vocabulary).
Definition cv.hpp:14924
bool empty() const
returns ture iff id, URI, fullName, and version are all empty
std::string URI
the URI for the resource.
Definition cv.hpp:14921
std::string version
the version of the CV from which the referred-to terms are drawn.
Definition cv.hpp:14927
structure for holding CV term info
Definition cv.hpp:14944
std::string name
Definition cv.hpp:14947
std::vector< CVID > id_list
Definition cv.hpp:14951
std::string prefix() const
std::multimap< std::string, CVID > otherRelations
Definition cv.hpp:14954
std::string id
Definition cv.hpp:14946
std::vector< std::string > exactSynonyms
Definition cv.hpp:14955
const std::string & shortName() const
id_list parentsPartOf
Definition cv.hpp:14953
std::string def
Definition cv.hpp:14948
std::multimap< std::string, std::string > propertyValues
Definition cv.hpp:14956