ProteoWizard
SpectrumList_LockmassRefiner.hpp
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1//
2// $Id$
3//
4//
5// Original author: Matt Chambers <matt.chambers <a.t> vanderbilt.edu>
6//
7// Copyright 2008 Vanderbilt University - Nashville, TN 37232
8//
9// Licensed under the Apache License, Version 2.0 (the "License");
10// you may not use this file except in compliance with the License.
11// You may obtain a copy of the License at
12//
13// http://www.apache.org/licenses/LICENSE-2.0
14//
15// Unless required by applicable law or agreed to in writing, software
16// distributed under the License is distributed on an "AS IS" BASIS,
17// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
18// See the License for the specific language governing permissions and
19// limitations under the License.
20//
21
22
23#ifndef _SPECTRUMLIST_LOCKMASSREFINER_HPP_
24#define _SPECTRUMLIST_LOCKMASSREFINER_HPP_
25
26
29
30
31namespace pwiz {
32namespace analysis {
33
34
35/// SpectrumList implementation to replace peak profiles with picked peaks
37{
38 public:
39
40 SpectrumList_LockmassRefiner(const msdata::SpectrumListPtr& inner, double lockmassMzPosScans, double lockmassMzNegScans, double lockmassTolerance);
41
42
43 static bool accept(const msdata::SpectrumListPtr& inner);
44
45 virtual msdata::SpectrumPtr spectrum(size_t index, msdata::DetailLevel detailLevel) const;
46 virtual msdata::SpectrumPtr spectrum(size_t index, bool getBinaryData = false) const;
47
48 private:
49 double mzPositiveScans_, mzNegativeScans_, tolerance_;
50};
51
52
53} // namespace analysis
54} // namespace pwiz
55
56
57#endif // _SPECTRUMLIST_LOCKMASSREFINER_HPP_
#define PWIZ_API_DECL
Definition Export.hpp:32
SpectrumList implementation to replace peak profiles with picked peaks.
SpectrumList_LockmassRefiner(const msdata::SpectrumListPtr &inner, double lockmassMzPosScans, double lockmassMzNegScans, double lockmassTolerance)
static bool accept(const msdata::SpectrumListPtr &inner)
virtual msdata::SpectrumPtr spectrum(size_t index, msdata::DetailLevel detailLevel) const
retrieve a spectrum by index
virtual msdata::SpectrumPtr spectrum(size_t index, bool getBinaryData=false) const
retrieve a spectrum by index
Inheritable pass-through implementation for wrapping a SpectrumList.
boost::shared_ptr< SpectrumList > SpectrumListPtr
Definition MSData.hpp:711
boost::shared_ptr< Spectrum > SpectrumPtr
Definition MSData.hpp:573