ProteoWizard
Class Index
A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Z
A
Activation (pwiz::msdata)
AdaptedErrorDerivative (pwiz::frequency::DerivativeTest)
AdaptedErrorFunction (pwiz::frequency::DerivativeTest)
AlternativeProtein (pwiz::data::pepxml)
AmbiguousResidue (pwiz::identdata)
AminoAcidModification (pwiz::data::pepxml)
AnalysisCollection (pwiz::identdata)
AnalysisData (pwiz::identdata)
AnalysisProtocolCollection (pwiz::identdata)
AnalysisResult (pwiz::data::pepxml)
AnalysisSampleCollection (pwiz::identdata)
AnalysisSoftware (pwiz::identdata)
AnalysisSummary (pwiz::data::pepxml)
AnalysisTimestamp (pwiz::data::pepxml)
analyzer_strings (pwiz::analysis)
analyzer_strings< MetadataReporter > (pwiz::analysis)
analyzer_strings< RegionSIC > (pwiz::analysis)
analyzer_strings< RegionSlice > (pwiz::analysis)
analyzer_strings< RegionTIC > (pwiz::analysis)
analyzer_strings< RunSummary > (pwiz::analysis)
analyzer_strings< SpectrumBinaryData > (pwiz::analysis)
analyzer_strings< SpectrumTable > (pwiz::analysis)
AnotherRootHandler
Handler::Attributes::attribute (pwiz::minimxml::SAXParser)
Handler::Attributes (pwiz::minimxml::SAXParser)
XMLWriter::Attributes (pwiz::minimxml)
B
BadListener
BaseDiffConfig (pwiz::data)
basic_charcounter (pwiz::minimxml)
BibliographicReference (pwiz::identdata)
Bin1D (ralab::base::resample)
BinaryData (pwiz::util)
BinaryDataArray (pwiz::msdata)
BinaryDataEncoder (pwiz::msdata)
BinaryIndexStream (pwiz::data)
Bucket1D (ralab::base::resample)
C
SpectrumListCache::CacheEntry (pwiz::msdata)
CalibrationParameters (pwiz::data)
CancelListener
CancelProgressCallback
basic_charcounter::category (pwiz::minimxml)
CharIndexedVector (pwiz::util)
CharIndexedVectorConstIterator (pwiz::util)
CharIndexedVectorIterator (pwiz::util)
Chromatogram (pwiz::msdata)
ChromatogramDataFilter (pwiz::analysis)
ChromatogramIdentity (pwiz::msdata)
ChromatogramList (pwiz::msdata)
ChromatogramList_ABI (pwiz::msdata::detail)
ChromatogramList_Agilent (pwiz::msdata::detail)
ChromatogramList_Bruker (pwiz::msdata::detail)
ChromatogramList_Filter (pwiz::analysis)
ChromatogramList_FilterPredicate_IndexSet (pwiz::analysis)
ChromatogramList_LockmassRefiner (pwiz::analysis)
ChromatogramList_mzML (pwiz::msdata)
ChromatogramList_SavitzkyGolaySmoother (pwiz::analysis)
ChromatogramList_Shimadzu (pwiz::msdata::detail)
ChromatogramList_Thermo (pwiz::msdata::detail)
ChromatogramList_Waters (pwiz::msdata::detail)
ChromatogramList_XICGenerator (pwiz::analysis)
ChromatogramListBase (pwiz::msdata)
ChromatogramListFactory (pwiz::analysis)
ChromatogramListSimple (pwiz::msdata)
ChromatogramListWrapper (pwiz::analysis)
ClickwrapPrompter (pwiz::util)
Image::Color (pwiz::util)
Component (pwiz::msdata)
ComponentList (pwiz::msdata)
Compound (pwiz::tradata)
IsotopeEnvelopeEstimator::Config (pwiz::chemistry)
FrequencyEstimatorPhysicalModel::Config (pwiz::frequency)
PeakDetectorMatchedFilter::Config (pwiz::frequency)
Reader::Config (pwiz::identdata)
RegionSlice::Config (pwiz::analysis)
Serializer_mzIdentML::Config (pwiz::identdata)
Serializer_pepXML::Config (pwiz::identdata)
Serializer_protXML::Config (pwiz::identdata)
Serializer_Text::Config (pwiz::identdata)
XMLWriter::Config (pwiz::minimxml)
BinaryDataEncoder::Config (pwiz::msdata)
Reader::Config (pwiz::msdata)
Serializer_mzML::Config (pwiz::msdata)
Serializer_mzXML::Config (pwiz::msdata)
SpectrumIterator::Config (pwiz::msdata)
Digestion::Config (pwiz::proteome)
Reader_FASTA::Config (pwiz::proteome)
Serializer_FASTA::Config (pwiz::proteome)
Reader1::Config
Reader2::Config
PeakFinder_SNR::Config (pwiz::analysis)
SpectrumTable::Config (pwiz::analysis)
FeatureDetectorPeakel::Config (pwiz::analysis)
MS2Deisotoper::Config (pwiz::analysis)
MS2NoiseFilter::Config (pwiz::analysis)
MSDataCache::Config (pwiz::analysis)
NoiseCalculator_2Pass::Config (pwiz::analysis)
PeakelGrower_Proximity::Config (pwiz::analysis)
PeakelPicker_Basic::Config (pwiz::analysis)
PeakFamilyDetectorFT::Config (pwiz::analysis)
PeakFitter_Parabola::Config (pwiz::analysis)
PepxmlRecordReader::Config (pwiz::analysis)
PrecursorMassFilter::Config (pwiz::analysis)
PrecursorRecalculatorDefault::Config (pwiz::analysis)
RegionAnalyzer::Config (pwiz::analysis)
RegionSIC::Config (pwiz::analysis)
RegionTIC::Config (pwiz::analysis)
RunSummary::Config (pwiz::analysis)
SpectrumBinaryData::Config (pwiz::analysis)
Configuration (pwiz::tradata)
BinaryData::const_iterator (pwiz::util)
Digestion::const_iterator (pwiz::proteome)
Contact (pwiz::identdata)
Contact (pwiz::msdata)
Contact (pwiz::tradata)
ContactRole (pwiz::identdata)
Convert2Dense (ralab::base::resample)
Correlation (pwiz::math::MatchedFilter)
CosineInterpolate (ralab::base::base::utilities)
CSHA1
CubicHermiteSpline (pwiz::analysis)
CubicHermiteSplineTest
CubicInterpolate (ralab::base::base::utilities)
CustomPair
CV (pwiz::cv)
CVIDMatchCVMap (pwiz::identdata)
CVMap (pwiz::identdata)
CVParam (pwiz::data)
CVParamIs (pwiz::data)
CVParamIsChildOf (pwiz::data)
CVTermInfo (pwiz::cv)
CVTranslator (pwiz::data)
CwtPeakDetector (pwiz::analysis)
D
DaCompFunctor (ralab::base::resample)
DatabaseTranslation (pwiz::identdata)
DataCollection (pwiz::identdata)
DataFilter (pwiz::data::pepxml)
MSDataAnalyzer::DataInfo (pwiz::analysis)
DataProcessing (pwiz::msdata)
DatasetDerivation (pwiz::data::pepxml)
Datum
DBSequence (pwiz::identdata)
dbsequence_p (pwiz::identdata)
DefaultArrayLengthSorter
DefaultReaderList (pwiz::identdata)
DefaultReaderList (pwiz::msdata)
DefaultReaderList (pwiz::proteome)
DefaultReaderList (pwiz::tradata)
DefaultTabHandler (pwiz::util)
DelimReader (pwiz::identdata)
DelimWriter (pwiz::identdata)
PrecursorMaskCodec::DemuxBoundary (pwiz::analysis)
DemuxDebugReader (pwiz::analysis)
DemuxDebugRWTest
DemuxDebugWriter (pwiz::analysis)
DemuxHelpersTest
DemuxSolver (pwiz::analysis)
DemuxSolverTest
DemuxTest
DemuxWindow (pwiz::analysis)
Diff (pwiz::data)
DiffConfig (pwiz::identdata)
DiffConfig (pwiz::tradata)
DiffConfig (pwiz::proteome)
DiffConfig (pwiz::msdata)
DigestedPeptide (pwiz::proteome)
DigestedPeptideLessThan
Digestion (pwiz::proteome)
DistributionPoint (pwiz::data::pepxml)
KernelTraits::Dummy (pwiz::math::MatchedFilter)
E
Element (pwiz::chemistry::detail)
Index::Entry (pwiz::data)
EnumConstantNotPresentException
EnzymaticSearchConstraint (pwiz::data::pepxml)
Enzyme (pwiz::identdata)
EnzymePtr_missedCleavages
EnzymePtr_specificity
Enzymes (pwiz::identdata)
ParametrizedFunction::ErrorFunction (pwiz::frequency)
ErrorPoint (pwiz::data::pepxml)
EvenMS2Predicate
EvenPredicate
EvenRequester
Evidence (pwiz::tradata)
ExtendedReaderList (pwiz::msdata)
ExtraZeroSamplesFilter (pwiz::analysis)
F
Feature (pwiz::data::peakdata)
FeatureDetector (pwiz::analysis)
FeatureDetectorPeakel (pwiz::analysis)
FeatureDetectorSimple (pwiz::analysis)
FeatureFile (pwiz::data::peakdata)
FeatureModeler (pwiz::analysis)
FeatureModeler_Gaussian (pwiz::analysis)
Fifth
FifthHandler
FileContent (pwiz::msdata)
FileDescription (pwiz::msdata)
Filter (pwiz::identdata)
FilterWrapper
First
FirstHandler
FlatRecordBuilder (pwiz::peptideid)
Formula (pwiz::chemistry)
FragmentArray (pwiz::identdata)
Fragmentation (pwiz::proteome)
FrequencyData (pwiz::data)
FrequencyEstimator (pwiz::frequency)
FrequencyEstimatorPhysicalModel (pwiz::frequency)
FrequencyEstimatorSimple (pwiz::frequency)
FTMSCompFunctor (ralab::base::resample)
FTSieve
G
Gauss (ralab::base::filter::utilities)
Gauss_1deriv (ralab::base::filter::utilities)
Goober
H
Handler (pwiz::minimxml::SAXParser)
HandlerFeature (pwiz::data::peakdata)
HandlerPeak (pwiz::data::peakdata)
HandlerPeakel (pwiz::data::peakdata)
HasBinaryDataPredicate
HasID (pwiz::data::diff_impl)
HermiteInterpolate (ralab::base::base::utilities)
I
id_p (pwiz::identdata)
IDemultiplexer (pwiz::analysis)
IdentData (pwiz::identdata)
IdentDataFile (pwiz::identdata)
Identifiable (pwiz::identdata)
IdentifiableParamContainer (pwiz::identdata)
IInterpolation
Image (pwiz::util)
Index (pwiz::data)
Index_mzML (pwiz::msdata)
SpectrumList_mzXML::index_not_found (pwiz::msdata)
IndexList (pwiz::proteome)
IndexList (pwiz::msdata)
Inputs (pwiz::identdata)
Instrument (pwiz::tradata)
InstrumentConfiguration (pwiz::msdata)
IntegerSet (pwiz::util)
Interpretation (pwiz::tradata)
IntegerSet::Interval (pwiz::util)
IonType (pwiz::identdata)
IPIFASTADatabase (pwiz::proteome)
IPrecursorMaskCodec (pwiz::analysis)
Is_T2D_Directory
IsDirectory
IsIMSData
isoChain
IsolationWindow (pwiz::analysis)
IsolationWindow (pwiz::msdata)
IsolationWindowFilter (pwiz::analysis)
Isotope (pwiz::chemistry::detail)
IsotopeCalculator (pwiz::chemistry)
isotopeChain
IsotopeEnvelopeEstimator (pwiz::chemistry)
IsotopeTable (pwiz::chemistry)
IsoWindowHasher (pwiz::analysis)
IsRawData
IsRawFile
IsTDF
IsWiffFile
IterationListener (pwiz::util)
IterationListenerRegistry (pwiz::util)
PeptideID::Iterator (pwiz::peptideid)
BinaryData::iterator (pwiz::util)
IntegerSet::Iterator (pwiz::util)
PeptideID::IteratorInternal (pwiz::peptideid)
K
KernelTraits (pwiz::math::MatchedFilter)
KernelTraitsBase (pwiz::math::MatchedFilter)
KernelTraitsBase< Y(*)(X)> (pwiz::math::MatchedFilter)
L
LegacyAdapter_Instrument (pwiz::msdata)
LegacyAdapter_Software (pwiz::msdata)
LinearInterpolate (ralab::base::base::utilities)
LinearLeastSquares (pwiz::math)
LinearLeastSquares< LinearLeastSquaresType_LU > (pwiz::math)
LinearLeastSquares< LinearLeastSquaresType_QR > (pwiz::math)
LinearSolver (pwiz::math)
LinearSolver< LinearSolverType_LU > (pwiz::math)
LinearSolver< LinearSolverType_QR > (pwiz::math)
LocalMaximumPeakDetector (pwiz::analysis)
LocalMinPeakArea (ralab::base::ms)
PeptideID::Location (pwiz::peptideid)
location_less (pwiz::peptideid)
Lock (pwiz::util)
M
MagnitudeLorentzian (pwiz::frequency)
MascotReader (pwiz::identdata)
MassAbundance (pwiz::chemistry)
MassTable (pwiz::identdata)
Match (pwiz::data::pepxml)
MatchData (pwiz::data::pepxml)
MatrixIO (pwiz::analysis)
MatrixIOTest
meanfunctor (ralab::base::resample::utilities)
Measure (pwiz::identdata)
MemoryIndex (pwiz::data)
MemoryMRUCache (pwiz::msdata)
MetadataReporter (pwiz::analysis)
Mexican_Hat (ralab::base::filter::utilities)
Mexican_Hat2 (ralab::base::filter::utilities)
MixtureModel (pwiz::data::pepxml)
ModAminoAcidMass (pwiz::data::pepxml)
Modification (pwiz::identdata)
Modification (pwiz::proteome)
Modification (pwiz::tradata)
ModificationInfo (pwiz::data::pepxml)
ModificationList (pwiz::proteome)
ModificationMap (pwiz::proteome)
mru_list (pwiz::util)
MS2Deisotoper (pwiz::analysis)
MS2NoiseFilter (pwiz::analysis)
MSData (pwiz::msdata)
MSDataAnalyzer (pwiz::analysis)
MSDataAnalyzerContainer (pwiz::analysis)
MSDataAnalyzerDriver (pwiz::analysis)
MSDataCache (pwiz::analysis)
MSDataFile (pwiz::msdata)
MSDataMerger (pwiz::msdata)
MSDataWithSettableVersion
DemuxTest::MSDPair
MSIHandler (pwiz::util)
MSInspectRecordBuilder (pwiz::peptideid)
MSLevelSorter
MSMSPipelineAnalysis (pwiz::data::pepxml)
MSMSRunSummary (pwiz::data::pepxml)
MSnHeader (pwiz::msdata)
MSXDemultiplexer (pwiz::analysis)
MyBase
MyPred
MyWrapper
MZIntensityPair (pwiz::msdata)
mzrtEqual
MZRTField (pwiz::analysis)
MZTolerance (pwiz::chemistry)
N
nativeID_less (pwiz::peptideid)
NestedHandler
NNLSSolver (pwiz::analysis)
PeakFamilyDetectorFT::NoDataException (pwiz::analysis)
Noise (pwiz::analysis)
NoiseCalculator (pwiz::analysis)
NoiseCalculator_2Pass (pwiz::analysis)
NoVendorPeakPickingException (pwiz::analysis)
NthPower (ralab::base::stats)
O
OBO (pwiz::data)
once_flag_proxy (pwiz::util)
OneMinusAbs
OrderedPair (pwiz::math)
OrderedPairContainerRef (pwiz::math)
Organization (pwiz::identdata)
organization_p (pwiz::identdata)
XMLWriter::OutputObserver (pwiz::minimxml)
OverlapDemultiplexer (pwiz::analysis)
P
pairData
Parabola (pwiz::math)
ParamContainer (pwiz::data)
Software::Parameter (pwiz::data::peakdata)
Parameter (pwiz::data::pepxml)
ParameterEstimator (pwiz::frequency)
ParametrizedCosine
ParametrizedDerivativeSlice (pwiz::frequency::DerivativeTest)
ParametrizedFunction (pwiz::frequency)
ParametrizedFunctionSlice (pwiz::frequency::DerivativeTest)
ParamGroup (pwiz::data)
MSXDemultiplexer::Params (pwiz::analysis)
OverlapDemultiplexer::Params (pwiz::analysis)
SpectrumList_Demux::Params (pwiz::analysis)
parentIon
Peak (pwiz::analysis)
Peak (pwiz::data::peakdata)
PeakData (pwiz::data::peakdata)
PeakDetector (pwiz::analysis)
PeakDetector (pwiz::frequency)
PeakDetectorMatchedFilter (pwiz::frequency)
PeakDetectorNaive (pwiz::frequency)
Peakel (pwiz::data::peakdata)
PeakelGrower (pwiz::analysis)
PeakelGrower_Proximity (pwiz::analysis)
PeakelPicker (pwiz::analysis)
PeakelPicker_Basic (pwiz::analysis)
PeakExtractor (pwiz::analysis)
PeakFamily (pwiz::data::peakdata)
PeakFamilyDetector (pwiz::analysis)
PeakFamilyDetectorFT (pwiz::analysis)
PeakFinder (pwiz::analysis)
PeakFinder_SNR (pwiz::analysis)
PeakFitter (pwiz::analysis)
PeakFitter_Parabola (pwiz::analysis)
PeakPicker (ralab::base::ms)
Pep2MzIdent (pwiz::identdata)
Peptide (pwiz::tradata)
Peptide (pwiz::proteome)
Peptide (pwiz::identdata)
PeptideEvidence (pwiz::identdata)
PeptideHypothesis (pwiz::identdata)
PeptideID (pwiz::peptideid)
PeptideID_flat (pwiz::peptideid)
PeptideID_pepXml (pwiz::peptideid)
PeptideIDMap (pwiz::peptideid)
PeptideProphetResult (pwiz::data::pepxml)
PeptideProphetSummary (pwiz::data::pepxml)
PepxmlRecordReader (pwiz::analysis)
PepXMLSpecificity (pwiz::identdata)
Person (pwiz::identdata)
person_p (pwiz::identdata)
pinned_gcroot (msclr)
Image::Point (pwiz::util)
PPMCompFunctor (ralab::base::resample)
Precursor (pwiz::msdata)
Precursor (pwiz::tradata)
precursorGroup
PrecursorRecalculator::PrecursorInfo (pwiz::analysis)
SpectrumList_PrecursorRefine::PrecursorInfo (pwiz::analysis)
SpectrumInfo::PrecursorInfo (pwiz::msdata)
PrecursorMaskCodec (pwiz::analysis)
PrecursorMassFilter (pwiz::analysis)
PrecursorRecalculator (pwiz::analysis)
PrecursorRecalculatorDefault (pwiz::analysis)
ChromatogramList_Filter::Predicate (pwiz::analysis)
ProteinList_DecoyGenerator::Predicate (pwiz::analysis)
ProteinList_Filter::Predicate (pwiz::analysis)
SpectrumList_Filter::Predicate (pwiz::analysis)
SpectrumList_Sorter::Predicate (pwiz::analysis)
Prediction (pwiz::tradata)
PrintAttribute
PrintEventHandler
ProcessingMethod (pwiz::msdata)
Product (pwiz::tradata)
Product (pwiz::msdata)
ProductSpace (pwiz::math::MatchedFilter)
MSDataAnalyzerDriver::ProgressCallback (pwiz::analysis)
Protein (pwiz::proteome)
Protein (pwiz::tradata)
ProteinAmbiguityGroup (pwiz::identdata)
ProteinDetection (pwiz::identdata)
ProteinDetectionHypothesis (pwiz::identdata)
ProteinDetectionList (pwiz::identdata)
ProteinDetectionProtocol (pwiz::identdata)
ProteinList (pwiz::proteome)
ProteinList_DecoyGenerator (pwiz::analysis)
ProteinList_DecoyGeneratorPredicate_Reversed (pwiz::analysis)
ProteinList_DecoyGeneratorPredicate_Shuffled (pwiz::analysis)
ProteinList_Filter (pwiz::analysis)
ProteinList_FilterPredicate_IdSet (pwiz::analysis)
ProteinList_FilterPredicate_IndexSet (pwiz::analysis)
ProteinListCache (pwiz::proteome)
ProteinListFactory (pwiz::analysis)
ProteinListSimple (pwiz::proteome)
ProteinListWrapper (pwiz::proteome)
ProteomeData (pwiz::proteome)
ProteomeDataFile (pwiz::proteome)
Provider (pwiz::identdata)
Publication (pwiz::tradata)
Q
Q3RatioResult (pwiz::data::pepxml)
R
random_access_compressed_ifstream (pwiz::util)
RawMassDatum
Reader (pwiz::identdata)
Reader (pwiz::msdata)
Reader (pwiz::proteome)
Reader (pwiz::tradata)
Reader1
Reader2
Reader_ABI (pwiz::msdata)
Reader_ABI_T2D (pwiz::msdata)
Reader_Agilent (pwiz::msdata)
Reader_Bruker (pwiz::msdata)
Reader_BTDX (pwiz::msdata)
Reader_FASTA (pwiz::proteome)
Reader_MGF (pwiz::msdata)
Reader_MSn (pwiz::msdata)
Reader_mz5 (pwiz::msdata)
Reader_mzML (pwiz::msdata)
Reader_mzXML (pwiz::msdata)
Reader_Shimadzu (pwiz::msdata)
Reader_Thermo (pwiz::msdata)
Reader_UIMF (pwiz::msdata)
Reader_UNIFI (pwiz::msdata)
Reader_Waters (pwiz::msdata)
Reader1::ReaderConfig
Reader2::ReaderConfig
ReaderFail (pwiz::tradata)
ReaderFail (pwiz::proteome)
ReaderFail (pwiz::identdata)
ReaderFail (pwiz::msdata)
ReaderList (pwiz::identdata)
ReaderList (pwiz::msdata)
ReaderList (pwiz::proteome)
ReaderList (pwiz::tradata)
ReaderTestConfig (pwiz::util)
PepxmlRecordReader::record (pwiz::analysis)
Record (pwiz::chemistry::Element::Info)
PeptideID::Record (pwiz::peptideid)
Record (pwiz::proteome::AminoAcid::Info)
IPIFASTADatabase::Record (pwiz::proteome)
MSIHandler::Record (pwiz::util)
RegexCVMap (pwiz::identdata)
RegionAnalyzer (pwiz::analysis)
RegionSIC (pwiz::analysis)
RegionSlice (pwiz::analysis)
RegionTIC (pwiz::analysis)
Residue (pwiz::identdata)
RetentionTime (pwiz::tradata)
ridgeLine
RocDataPoint (pwiz::data::pepxml)
Root
RootHandler
rtimeMap
RTMatches_Any (pwiz::analysis)
RTMatches_Contains (pwiz::analysis)
RTMatches_IsContainedIn (pwiz::analysis)
Run (pwiz::msdata)
RunSummary (pwiz::analysis)
S
Same (pwiz::data::diff_impl)
SameDeep (pwiz::data::diff_impl)
Sample (pwiz::msdata)
Sample (pwiz::identdata)
SampleDatum (pwiz::data)
SampledData (pwiz::math::MatchedFilter)
SampleEnzyme (pwiz::data::pepxml)
SamplingWith (ralab::base::resample)
SavitzkyGolaySmoother (pwiz::analysis)
saxstring (pwiz::minimxml::SAXParser)
Scan (pwiz::data::peakdata)
Scan (pwiz::msdata)
ScanList (pwiz::msdata)
ScanSettings (pwiz::msdata)
ScanWindow (pwiz::msdata)
PeakDetectorMatchedFilter::Score (pwiz::frequency)
scoreChain
SearchDatabase (pwiz::data::pepxml)
SearchDatabase (pwiz::identdata)
SearchHit (pwiz::data::pepxml)
SearchModification (pwiz::identdata)
SearchResult (pwiz::data::pepxml)
SearchScore (pwiz::data::pepxml)
SearchSummary (pwiz::data::pepxml)
Second
SecondHandler
SelectedIndexPredicate
SelectedIon (pwiz::msdata)
seq_p (pwiz::identdata)
SeqMinus (ralab::base::base::utilities)
SeqPlus (ralab::base::base::utilities)
sequence_p (pwiz::identdata)
SequenceCollection (pwiz::identdata)
Serializer_FASTA (pwiz::proteome)
Serializer_MGF (pwiz::msdata)
Serializer_MSn (pwiz::msdata)
Serializer_mzIdentML (pwiz::identdata)
Serializer_mzML (pwiz::msdata)
Serializer_mzXML (pwiz::msdata)
Serializer_pepXML (pwiz::identdata)
Serializer_protXML (pwiz::identdata)
Serializer_Text (pwiz::identdata)
Serializer_traML (pwiz::tradata)
SetRetentionTime
SHA1_ostream (pwiz::util)
SHA1_WORKSPACE_BLOCK
SHA1Calculator (pwiz::util)
SHA1Filter (pwiz::util)
SHA1OutputObserver (pwiz::msdata)
SHA1SymmetricFilter (pwiz::util)
shared_map (pwiz::util)
SpectrumIterator::Sieve (pwiz::msdata)
Simple
SimpleAnalyzer
SimplePeakArea (ralab::base::ms)
SimplePicker (ralab::base::ms)
SimpleProgressCallback
Smoother (pwiz::analysis)
Software (pwiz::data::peakdata)
Software (pwiz::msdata)
Software (pwiz::tradata)
software_p (pwiz::identdata)
SourceFile (pwiz::identdata)
SourceFile (pwiz::msdata)
Specificity (pwiz::data::pepxml)
SpectraData (pwiz::identdata)
Spectrum (pwiz::msdata)
SpectrumBinaryData (pwiz::analysis)
SpectrumDataFilter (pwiz::analysis)
SpectrumIdentification (pwiz::identdata)
SpectrumIdentificationItem (pwiz::identdata)
SpectrumIdentificationList (pwiz::identdata)
SpectrumIdentificationProtocol (pwiz::identdata)
SpectrumIdentificationResult (pwiz::identdata)
SpectrumIdentity (pwiz::msdata)
SpectrumIdentityFromMzXML (pwiz::msdata)
SpectrumIdentityFromXML (pwiz::msdata)
SpectrumInfo (pwiz::msdata)
SpectrumIterator (pwiz::msdata)
SpectrumList (pwiz::msdata)
SpectrumList_3D (pwiz::analysis)
SpectrumList_ABI (pwiz::msdata::detail)
SpectrumList_ABI_T2D (pwiz::msdata::detail)
SpectrumList_Agilent (pwiz::msdata::detail)
SpectrumList_Bruker (pwiz::msdata::detail)
SpectrumList_BTDX (pwiz::msdata)
SpectrumList_ChargeFromIsotope (pwiz::analysis)
SpectrumList_ChargeStateCalculator (pwiz::analysis)
SpectrumList_Demux (pwiz::analysis)
SpectrumList_Filter (pwiz::analysis)
SpectrumList_FilterPredicate_ActivationType (pwiz::analysis)
SpectrumList_FilterPredicate_AnalyzerType (pwiz::analysis)
SpectrumList_FilterPredicate_ChargeStateSet (pwiz::analysis)
SpectrumList_FilterPredicate_DefaultArrayLengthSet (pwiz::analysis)
SpectrumList_FilterPredicate_IdSet (pwiz::analysis)
SpectrumList_FilterPredicate_IndexSet (pwiz::analysis)
SpectrumList_FilterPredicate_MSLevelSet (pwiz::analysis)
SpectrumList_FilterPredicate_MzPresent (pwiz::analysis)
SpectrumList_FilterPredicate_Polarity (pwiz::analysis)
SpectrumList_FilterPredicate_PrecursorMzSet (pwiz::analysis)
SpectrumList_FilterPredicate_ScanEventSet (pwiz::analysis)
SpectrumList_FilterPredicate_ScanNumberSet (pwiz::analysis)
SpectrumList_FilterPredicate_ScanTimeRange (pwiz::analysis)
SpectrumList_FilterPredicate_ThermoScanFilter (pwiz::analysis)
SpectrumList_IonMobility (pwiz::analysis)
SpectrumList_LockmassRefiner (pwiz::analysis)
SpectrumList_MetadataFixer (pwiz::analysis)
SpectrumList_MGF (pwiz::msdata)
SpectrumList_MSn (pwiz::msdata)
SpectrumList_mzML (pwiz::msdata)
SpectrumList_MZRefiner (pwiz::analysis)
SpectrumList_MZWindow (pwiz::analysis)
SpectrumList_mzXML (pwiz::msdata)
SpectrumList_PeakFilter (pwiz::analysis)
SpectrumList_PeakPicker (pwiz::analysis)
SpectrumList_PrecursorRecalculator (pwiz::analysis)
SpectrumList_PrecursorRefine (pwiz::analysis)
SpectrumList_ScanSummer (pwiz::analysis)
SpectrumList_Shimadzu (pwiz::msdata::detail)
SpectrumList_Smoother (pwiz::analysis)
SpectrumList_Sorter (pwiz::analysis)
SpectrumList_SorterPredicate_ScanStartTime (pwiz::analysis)
SpectrumList_Thermo (pwiz::msdata::detail)
SpectrumList_TitleMaker (pwiz::analysis)
SpectrumList_UIMF (pwiz::msdata::detail)
SpectrumList_UNIFI (pwiz::msdata::detail)
SpectrumList_Waters (pwiz::msdata::detail)
SpectrumList_ZeroSamplesFilter (pwiz::analysis)
SpectrumListBase (pwiz::msdata)
SpectrumListCache (pwiz::msdata)
SpectrumListFactory (pwiz::analysis)
SpectrumListIonMobilityBase (pwiz::msdata)
SpectrumListSimple (pwiz::msdata)
SpectrumListWrapper (pwiz::msdata)
SpectrumPeakExtractor (pwiz::analysis)
SpectrumPeakExtractorTest
SpectrumQuery (pwiz::data::pepxml)
RegionAnalyzer::SpectrumStats (pwiz::analysis)
SpectrumTable (pwiz::analysis)
SpectrumWorkerThreads (pwiz::msdata)
SquareRoot (ralab::base::resample)
RegionAnalyzer::Stats (pwiz::analysis)
Stats (pwiz::math)
Handler::Status (pwiz::minimxml::SAXParser)
StringMatchCVMap (pwiz::identdata)
SubstitutionModification (pwiz::identdata)
T
TabHandler (pwiz::util)
TabReader (pwiz::util)
TabularConfig (pwiz::analysis)
Target (pwiz::msdata)
Target (pwiz::tradata)
TargetList (pwiz::tradata)
Term (pwiz::data)
TestAminoAcid
TestChargeStateCalculator
TestData
TestDatum
TestDeisotopeCalculator
TestDeisotoper
TestETDMassFilter
TestFormula
TestFragmentation
TestInfo
TestIterationListener
TestIterationListener_WithCancel
TestListener
TestMetadataFixer
TestModification
TestModifiedPeptide
TestMS2Denoise
TestOperator
TestOutputObserver
TestPair
TestPathmask
TestPathPredicate (pwiz::util)
TestPeptide
TestReader
TestScanSummerCalculator
TestSpectrumInfo
TestThresholder
TextWriter (pwiz::tradata)
TextWriter (pwiz::proteome)
TextWriter (pwiz::msdata)
TextWriter (pwiz::identdata)
ThreadStatus
ThresholdFilter (pwiz::analysis)
TimeIntensityPair (pwiz::msdata)
Timer (pwiz::util)
TraData (pwiz::tradata)
TraDataFile (pwiz::tradata)
Transition (pwiz::tradata)
TranslationTable (pwiz::identdata)
TruncatedLorentzian (pwiz::frequency)
TruncatedLorentzianEstimator (pwiz::frequency)
TruncatedLorentzianParameters (pwiz::frequency)
U
IterationListener::UpdateMessage (pwiz::util)
usage_exception (pwiz::util)
user_error (pwiz::util)
UserParam (pwiz::data)
UserParamNameIs
V
Validation (pwiz::tradata)
VectorFunction (pwiz::frequency::DerivativeTest)
VectorTabHandler (pwiz::util)
SpectrumList_Waters::VendorOptions (pwiz::msdata::detail)
Version (pwiz::analysis)
Version (pwiz::identdata)
Version (pwiz::msdata)
Version (pwiz::proteome)
Version (pwiz::tradata)
Version (pwiz)
virtual_map (pwiz::util)
W
WhittakerSmoother (pwiz::analysis)
IdentDataFile::WriteConfig (pwiz::identdata)
MSDataFile::WriteConfig (pwiz::msdata)
ProteomeDataFile::WriteConfig (pwiz::proteome)
TraDataFile::WriteConfig (pwiz::tradata)
WriteCVParam
X
XMLWriter (pwiz::minimxml)
Z
ZeroSampleFiller (pwiz::analysis)