libpappsomspp
Library for mass spectrometry
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peakionmatch.cpp
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1/**
2 * \file pappsomspp/psm/peakionmatch.cpp
3 * \date 4/4/2015
4 * \author Olivier Langella
5 * \brief associate a peak and a peptide + charge
6 */
7
8/*******************************************************************************
9 * Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
10 *
11 * This file is part of the PAPPSOms++ library.
12 *
13 * PAPPSOms++ is free software: you can redistribute it and/or modify
14 * it under the terms of the GNU General Public License as published by
15 * the Free Software Foundation, either version 3 of the License, or
16 * (at your option) any later version.
17 *
18 * PAPPSOms++ is distributed in the hope that it will be useful,
19 * but WITHOUT ANY WARRANTY; without even the implied warranty of
20 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
21 * GNU General Public License for more details.
22 *
23 * You should have received a copy of the GNU General Public License
24 * along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
25 *
26 * Contributors:
27 * Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
28 *implementation
29 ******************************************************************************/
30
31#include "peakionmatch.h"
32
33namespace pappso
34{
36 const PeptideFragmentIonSp &ion_sp,
37 unsigned int charge)
38 : _peak(peak), _ion_sp(ion_sp), _charge(charge)
39{
40}
41
43 : _peak(other._peak), _ion_sp(other._ion_sp), _charge(other._charge)
44{
45}
46
48 : _peak(std::move(other._peak)),
49 _ion_sp(other._ion_sp),
50 _charge(std::move(other._charge))
51{
52}
53
57
58
61{
62 _peak = other._peak;
63 _ion_sp = other._ion_sp;
64 _charge = other._charge;
65
66 return *this;
67}
68
74
75const DataPoint &
77{
78 return _peak;
79}
80
81unsigned int
83{
84 return _charge;
85}
86
89{
90 return _ion_sp.get()->getPeptideIonType();
91}
92
95{
96 return _ion_sp.get()->getPeptideFragmentSp().get()->getPeptideIonDirection();
97}
98
99QString
101{
102 return QString("%1").arg(
103 _ion_sp.get()->getCompletePeptideIonName(getCharge()));
104}
105
106} // namespace pappso
PeptideFragmentIonSp _ion_sp
const DataPoint & getPeak() const
PeptideIon getPeptideIonType() const
unsigned int _charge
virtual const PeptideFragmentIonSp & getPeptideFragmentIonSp() const
virtual QString toString() const
PeakIonMatch & operator=(const PeakIonMatch &other)
PeptideDirection getPeptideIonDirection() const
PeakIonMatch(const DataPoint &peak, const PeptideFragmentIonSp &ion_sp, unsigned int charge)
unsigned int getCharge() const
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition aa.cpp:39
PeptideIon
PeptideIon enum defines all types of ions (Nter or Cter)
Definition types.h:425
std::shared_ptr< const PeptideFragmentIon > PeptideFragmentIonSp
PeptideDirection
Definition peptide.h:46
associate a peak and a peptide + charge