libpappsomspp
Library for mass spectrometry
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filterobopsimodsink.cpp
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1/*******************************************************************************
2 * Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
3 *
4 * This file is part of the PAPPSOms++ library.
5 *
6 * PAPPSOms++ is free software: you can redistribute it and/or modify
7 * it under the terms of the GNU General Public License as published by
8 * the Free Software Foundation, either version 3 of the License, or
9 * (at your option) any later version.
10 *
11 * PAPPSOms++ is distributed in the hope that it will be useful,
12 * but WITHOUT ANY WARRANTY; without even the implied warranty of
13 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
14 * GNU General Public License for more details.
15 *
16 * You should have received a copy of the GNU General Public License
17 * along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
18 *
19 * Contributors:
20 * Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
21 *implementation
22 ******************************************************************************/
23
24#include "filterobopsimodsink.h"
25#include "../exception/exceptionnotfound.h"
26
27namespace pappso
28{
32
36
37const std::list<OboPsiModTerm> &
42
43void
48
49const OboPsiModTerm &
51{
52 if(m_oboPsiModTermList.size() == 1)
53 {
54 return *m_oboPsiModTermList.begin();
55 }
56 if(m_oboPsiModTermList.size() == 0)
57 {
58 throw ExceptionNotFound(QObject::tr("OBO term list is empty"));
59 }
60 else
61 {
63 QObject::tr("Too much OBO terms in list (size = %1)")
64 .arg(m_oboPsiModTermList.size()));
65 }
66}
67
68const OboPsiModTerm &
70{
71 if(m_oboPsiModTermList.size() == 0)
72 {
73 throw ExceptionNotFound(QObject::tr("OBO term list is empty"));
74 }
75 else
76 {
77 return *m_oboPsiModTermList.begin();
78 }
79}
80} // namespace pappso
const std::list< OboPsiModTerm > & getOboPsiModTermList()
std::list< OboPsiModTerm > m_oboPsiModTermList
void setOboPsiModTerm(const OboPsiModTerm &term) override
triggered function on each obo term when parsing obo file
const OboPsiModTerm & getFirst()
const OboPsiModTerm & getOne()
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition aa.cpp:39