Uses of Interface
jebl.evolution.coalescent.DemographicFunction
Packages that use DemographicFunction
-
Uses of DemographicFunction in jebl.evolution.coalescent
Classes in jebl.evolution.coalescent that implement DemographicFunctionModifier and TypeClassDescriptionclass
This class models an exponentially growing (or shrinking) population (Parameters: N0=present-day population size; r=growth rate).class
This class models coalescent intervals for a constant population (parameter: N0=present-day population size).class
This class models exponential growth from an initial population size.class
This class models logistic growth from an initial population size.class
class
This class models exponential growth from an initial ancestral population size.class
This class models an exponentially growing (or shrinking) population (Parameters: N0=present-day population size; r=growth rate).class
This class models logistic growth from an initial exponential phase.class
This class models logistic growth.Methods in jebl.evolution.coalescent with parameters of type DemographicFunctionModifier and TypeMethodDescriptionstatic final double
Coalescent.calculateLogLikelihood
(IntervalList intervals, DemographicFunction demographicFunction) Calculates the log likelihood of this set of coalescent intervals, given a demographic model.static void
DemographicFunction.Utils.testConsistency
(DemographicFunction demographicFunction, int steps, double maxTime) This function tests the consistency of the getIntensity and getInverseIntensity methods of this demographic model.Constructors in jebl.evolution.coalescent with parameters of type DemographicFunctionModifierConstructorDescriptionCoalescent
(IntervalList intervals, DemographicFunction demographicFunction) Coalescent
(RootedTree tree, DemographicFunction demographicFunction) -
Uses of DemographicFunction in jebl.evolution.treesimulation
Constructors in jebl.evolution.treesimulation with parameters of type DemographicFunctionModifierConstructorDescriptionCoalescentIntervalGenerator
(DemographicFunction demographicFunction)