Uses of Interface
org.forester.protein.Domain
Packages that use Domain
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Uses of Domain in org.forester.protein
Classes in org.forester.protein that implement DomainFields in org.forester.protein with type parameters of type DomainModifier and TypeFieldDescriptionstatic Comparator
<Domain> BasicProtein.DomainMidPositionComparator
Methods in org.forester.protein that return DomainModifier and TypeMethodDescriptionBasicProtein.getProteinDomain
(int index) Protein.getProteinDomain
(int index) Methods in org.forester.protein that return types with arguments of type DomainModifier and TypeMethodDescriptionBasicProtein.getDomainsSortedByPosition()
Protein.getDomainsSortedByPosition()
BasicProtein.getProteinDomains()
BasicProtein.getProteinDomains
(String domain_id) Protein.getProteinDomains()
Protein.getProteinDomains
(String domain_id) Methods in org.forester.protein with parameters of type DomainModifier and TypeMethodDescriptionvoid
BasicProtein.addProteinDomain
(Domain protein_domain) void
Protein.addProteinDomain
(Domain protein_domain) int
Basic domains are compared/sorted based upon their identifiers (case insensitive) and their numbers. -
Uses of Domain in org.forester.surfacing
Classes in org.forester.surfacing that implement DomainMethods in org.forester.surfacing that return types with arguments of type DomainModifier and TypeMethodDescriptionSurfacingUtil.sortDomainsWithAscendingConfidenceValues
(Protein protein) Methods in org.forester.surfacing with parameters of type Domain -
Uses of Domain in org.forester.util
Methods in org.forester.util with parameters of type DomainModifier and TypeMethodDescriptionstatic int
ForesterUtil.calculateOverlap
(Domain domain, List<Boolean> covered_positions) static boolean
ForesterUtil.isEngulfed
(Domain domain, List<Boolean> covered_positions) Returns true is Domain domain falls in an uninterrupted stretch of covered positions.