libStatGen Software 1
ReadFiles.h
1/*
2 * Copyright (C) 2010 Regents of the University of Michigan
3 *
4 * This program is free software: you can redistribute it and/or modify
5 * it under the terms of the GNU General Public License as published by
6 * the Free Software Foundation, either version 3 of the License, or
7 * (at your option) any later version.
8 *
9 * This program is distributed in the hope that it will be useful,
10 * but WITHOUT ANY WARRANTY; without even the implied warranty of
11 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
12 * GNU General Public License for more details.
13 *
14 * You should have received a copy of the GNU General Public License
15 * along with this program. If not, see <http://www.gnu.org/licenses/>.
16 */
17
18#include "SamFile.h"
19void testReadSam();
20void testReadBam();
21void testRead(SamFile &inSam);
22
23void testAddHeaderAndTagToFile(const char* inputName, const char* outputName);
24
25void testValidateSortedRead();
26
27void validateRead1ModQuality(SamRecord& samRecord);
28
29void testModHeader(SamFileHeader& samHeader);
30
31void testFlagRead(const char* fileName);
32
33void testCopyHeader(SamFileHeader& samHeader);
This class allows a user to get/set the fields in a SAM/BAM Header.
Definition: SamFileHeader.h:35
Allows the user to easily read/write a SAM/BAM file.
Definition: SamFile.h:36
Class providing an easy to use interface to get/set/operate on the fields in a SAM/BAM record.
Definition: SamRecord.h:52