libStatGen Software 1
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This is the complete list of members for BamIndex, including all inherited members.
BamIndex() (defined in BamIndex) | BamIndex | |
getBinsForRegion(uint32_t start, uint32_t end, bool binMap[MAX_NUM_BINS+1]) (defined in IndexBase) | IndexBase | protectedstatic |
getChunksForRegion(int32_t refID, int32_t start, int32_t end, SortedChunkList &chunkList) | BamIndex | |
getMaxOffset() const (defined in BamIndex) | BamIndex | |
getMinOffsetFromLinearIndex(int32_t refID, uint32_t position, uint64_t &minOffset) const (defined in IndexBase) | IndexBase | |
getNumMappedReads(int32_t refID) | BamIndex | |
getNumRefs() const | IndexBase | |
getNumUnMappedReads(int32_t refID) | BamIndex | |
getReferenceMinMax(int32_t refID, uint64_t &minOffset, uint64_t &maxOffset) const | BamIndex | |
IndexBase() (defined in IndexBase) | IndexBase | |
LINEAR_INDEX_SHIFT (defined in IndexBase) | IndexBase | protectedstatic |
MAX_NUM_BINS (defined in IndexBase) | IndexBase | protectedstatic |
MAX_POSITION (defined in IndexBase) | IndexBase | protectedstatic |
myRefs (defined in IndexBase) | IndexBase | protected |
n_ref (defined in IndexBase) | IndexBase | protected |
printIndex(int32_t refID, bool summary=false) | BamIndex | |
readIndex(const char *filename) | BamIndex | virtual |
REF_ID_ALL | BamIndex | static |
REF_ID_UNMAPPED | BamIndex | static |
resetIndex() | BamIndex | virtual |
UNKNOWN_NUM_READS | BamIndex | static |
~BamIndex() (defined in BamIndex) | BamIndex | virtual |
~IndexBase() (defined in IndexBase) | IndexBase | virtual |