libStatGen Software 1
Class Index
A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | Q | R | S | T | U | V | W | _
A
Alleles
AnalyzeClass
B
BamIndex
BamIndexFileTest
BamInterface
bamRecordStruct
BaseAsciiMap
BaseComposition
BaseCount
baseQualityConvertor
BaseUtilities
BasicHash
BGZF
IndexBase::Bin
C
CharBuffer
Chromosome
ChromosomeInfo
Chunk
Cigar
CigarHelper
CigarHelperTest
Cigar::CigarOperator
CigarRoller
CigarRollerTest
ColumnExtras
D
defaultPileup
DoubleParameter
E
emptyGenericHeader
EqualsTest
ErrorHandler
F
Family
FastQFile
FastQStatus
FileType
FilterTest
FortranFormat
G
GenericSamInterface
GenomeSequence
genomeSequenceMmapHeader
GenotypeList
glfEntry
GlfException
GlfFile
GlfFileReader
GlfFileWriter
glfHandler
GlfHeader
glfIndel
GlfRecord
GlfRefSection
GlfStatus
GlobalTestEnvironment
GreedyTupleAligner
GzipHeader
H
HiddenDouble
HiddenInteger
HiddenString
HiddenSwitch
I
IFILE_Test
IndexBase
InputFile
IntArray
IntHash
IntParameter
K
knetFile_s
L
ListParameter
LongCounter
LongHash
LongParamContainer
LongParameterList
LongParameters
M
MarkerInfo
Matrix
MD5_CTX
MemoryMap
MemoryMapArray
MemoryMapArrayHeader
MemoryMapArrayTest
MemoryMapGenericHeader
MiniDeflate
MockGenomeSequence
modify
modifyVar
N
NonOverlapRegionPos
NonOverlapRegions
NonOverlapRegionsTest
O
OptionList
P
PackedArrayTest
PackedRead
PackedSequenceData
PackedVector
Parameter
ParameterList
Pedigree
PedigreeDescription
PedigreeGlobals
PedigreeKey
Person
PhoneHome
Pileup
PileupElement
PileupElementBaseQual
PileupHelper
PosList
Q
QuickIndex
R
Random
IndexBase::Reference
ReferenceSequenceTest
ReusableVector
ReusableVectorTest
ReusableVectorTestDataType
RunningStat
S
SamCoordOutput
SamCoordOutputTest
SamFile
SamFileHeader
SamFileReader
SamFileWriter
SamFilter
SamFlag
SamHeaderHD
SamHeaderPG
SamHeaderRecord
SamHeaderRG
SamHeaderSQ
SamHeaderTag
SamHelper
SamInterface
SamQuerySeqWithRef
SamQuerySeqWithRefIter
SamRecord
SamRecordHelper
SamRecordHelperTest
SamRecordPool
SamRecordPoolTest
SamReferenceInfo
SamSingleBaseMatchInfo
SamStatistics
SamTags
SamValidationError
SamValidationErrors
SamValidator
SetParameter
ShiftIndelsTest
SmithWaterman
SortedChunkList
StatGenStatus
String
StringAlias
StringArray
StringDoubleHash
StringHash
StringHashBase
StringIntHash
StringIntMap
StringMap
StringParameter
SwitchParameter
T
Tabix
TestPileup
TestPileupElement
TestPosList
TestValidate
TestWrite
Timing
U
UncompressedFileType
UnitTest
V
Vector
VectorFunc
W
SmithWaterman::weight
Weight
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