libStatGen Software 1
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Static Public Member Functions | |
static int | GetTraitID (const char *name) |
static int | GetMarkerID (const char *name) |
static int | GetCovariateID (const char *name) |
static int | GetAffectionID (const char *name) |
static int | GetStringID (const char *name) |
static int | LookupTrait (const char *name) |
static int | LookupMarker (const char *name) |
static int | LookupCovariate (const char *name) |
static int | LookupAffection (const char *name) |
static int | LookupString (const char *name) |
static void | GrowMarkerInfo () |
static MarkerInfo * | GetMarkerInfo (String &name) |
static MarkerInfo * | GetMarkerInfo (int marker) |
static int | SortMarkersInMapOrder (IntArray &markers, int chromosome=-1) |
static void | GetOrderedMarkers (IntArray &markers) |
static void | FlagMissingMarkers (IntArray &missingMarkers) |
static bool | MarkerPositionsAvailable () |
static bool | AlleleFrequenciesAvailable () |
static void | VerifySexSpecificOrder () |
static void | LoadAlleleFrequencies (const char *filename, bool required=false) |
static void | LoadAlleleFrequencies (IFILE &file) |
static void | LoadMarkerMap (const char *filename, bool filter=false) |
static void | LoadMarkerMap (IFILE &file, bool filter=false) |
static void | LoadBasepairMap (const char *filename) |
static void | LoadBasepairMap (IFILE &file) |
static void | WriteMapFile (const char *filename) |
static void | WriteMapFile (FILE *file) |
static void | WriteFreqFile (const char *filename, bool old_format=false) |
static void | WriteFreqFile (FILE *file, bool old_format=false) |
static int | LoadAllele (int marker, String &label) |
static int | LoadAllele (MarkerInfo *info, String &label) |
Static Public Attributes | |
static int | traitCount = 0 |
static int | markerCount = 0 |
static int | affectionCount = 0 |
static int | covariateCount = 0 |
static int | stringCount = 0 |
static bool | chromosomeX = false |
static bool | sexSpecificMap = false |
static StringArray | traitNames |
static StringArray | covariateNames |
static StringArray | affectionNames |
static StringArray | markerNames |
static StringArray | stringNames |
static StringIntHash | markerLookup |
static StringIntHash | traitLookup |
static StringIntHash | affectionLookup |
static StringIntHash | covariateLookup |
static StringIntHash | stringLookup |
static int | markerInfoCount = 0 |
static int | markerInfoSize = 0 |
static MarkerInfo ** | markerInfo = NULL |
static StringHash | markerInfoByName |
static MarkerInfo ** | markerInfoByInteger = NULL |
Definition at line 107 of file PedigreeGlobals.h.
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Definition at line 204 of file PedigreeGlobals.h.
PedigreeGlobals::~PedigreeGlobals | ( | ) |
Definition at line 711 of file PedigreeGlobals.cpp.
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Definition at line 158 of file PedigreeGlobals.h.
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Definition at line 162 of file PedigreeGlobals.h.
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Definition at line 146 of file PedigreeGlobals.h.
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Definition at line 797 of file PedigreeGlobals.cpp.
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