libStatGen Software 1
SamValidator Member List

This is the complete list of members for SamValidator, including all inherited members.

isValid(SamFileHeader &samHeader, SamRecord &samRecord, SamValidationErrors &validationErrors)SamValidatorstatic
isValid1BasedPos(int32_t pos, SamValidationErrors &validationErrors)SamValidatorstatic
isValidCigar(SamRecord &samRecord, SamValidationErrors &validationErrors)SamValidatorstatic
isValidCigar(const char *cigar, const char *sequence, SamValidationErrors &validationErrors)SamValidatorstatic
isValidCigar(const char *cigar, int seqLen, SamValidationErrors &validationErrors)SamValidatorstatic
isValidFlag(uint16_t flag, SamValidationErrors &validationErrors)SamValidatorstatic
isValidIsize()SamValidatorstatic
isValidMapQuality(uint8_t mapQuality, SamValidationErrors &validationErrors)SamValidatorstatic
isValidMpos()SamValidatorstatic
isValidMrnm()SamValidatorstatic
isValidQname(const char *qname, uint8_t qnameLen, SamValidationErrors &validationErrors)SamValidatorstatic
isValidQuality(SamRecord &samRecord, SamValidationErrors &validationErrors)SamValidatorstatic
isValidQuality(const char *quality, const char *sequence, SamValidationErrors &validationErrors)SamValidatorstatic
isValidQuality(const char *quality, int seqLength, SamValidationErrors &validationErrors)SamValidatorstatic
isValidRefID(int32_t refID, const SamReferenceInfo &refInfo, SamValidationErrors &validationErrors)SamValidatorstatic
isValidRname(SamFileHeader &samHeader, const char *rname, SamValidationErrors &validationErrors)SamValidatorstatic
isValidRname(const char *rname, SamValidationErrors &validationErrors)SamValidatorstatic
isValidSeq()SamValidatorstatic
isValidSequence(SamRecord &samRecord, SamValidationErrors &validationErrors)SamValidatorstatic
isValidTags(SamRecord &samRecord, SamValidationErrors &validationErrors)SamValidatorstatic
isValidValue()SamValidatorstatic
isValidVtype()SamValidatorstatic